AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146180 MtrunA17_Chr1g0153801 93.448 290 16 2 1 288 1 289 0.0 509
Msa0146180 MtrunA17_Chr2g0305941 48.869 221 108 2 67 287 65 280 1.14e-73 227
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146180 AT2G26550.2 59.375 256 92 1 45 288 44 299 9.22e-103 302
Msa0146180 AT2G26550.3 56.089 271 92 2 45 288 44 314 1.48e-98 292
Msa0146180 AT2G26550.1 49.196 311 91 3 45 288 44 354 1.21e-89 271
Msa0146180 AT2G26550.4 56.637 226 86 1 45 258 44 269 1.53e-81 248
Msa0146180 AT2G26670.1 45.956 272 134 4 17 287 22 281 2.79e-80 244
Msa0146180 AT1G69720.1 50.679 221 106 1 67 287 67 284 1.42e-77 238
Msa0146180 AT1G69720.3 50.679 221 106 1 67 287 67 284 1.42e-77 238
Msa0146180 AT1G58300.1 42.586 263 133 3 26 287 37 282 5.17e-70 218
Msa0146180 AT2G26670.2 42.152 223 78 2 65 287 62 233 1.04e-59 190
Msa0146180 AT1G69720.2 47.205 161 82 1 67 227 67 224 1.22e-47 159

Find 102 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAGTTCCTCTAAATATT+TGG 0.110208 1_4:+5911460 None:intergenic
AAGAAAATGATGACGCTTAT+AGG 0.180424 1_4:-5908806 Msa0146180:three_prime_UTR
GAGAATGATGATTCTTCTTC+TGG 0.223274 1_4:+5912633 None:intergenic
TTCTGTATTGTAGCTGTTCT+AGG 0.224531 1_4:-5908732 Msa0146180:three_prime_UTR
GAAAGGCTTTCTTCGATTCT+TGG 0.256872 1_4:-5912368 Msa0146180:CDS
CCTCATCTCTTCGGTGATTC+CGG 0.265544 1_4:+5912501 None:intergenic
GTTGTCACGCCTCACATTTA+TGG 0.270091 1_4:-5909208 Msa0146180:three_prime_UTR
CAAACTACAGAGAACTTAAA+TGG 0.299562 1_4:+5908918 None:intergenic
CTGAGGTGCTAATTGTAAAA+TGG 0.313698 1_4:+5908768 None:intergenic
CGAAGAAAGCCTTTCATAGA+AGG 0.348541 1_4:+5912376 None:intergenic
TAACCTGGCCCTGGCAGCTT+TGG 0.349399 1_4:+5909169 None:intergenic
GGGCCAGGTTACATCTGTTA+TGG 0.369645 1_4:-5909157 Msa0146180:three_prime_UTR
ACTCCAGCTCCTTACCTTCC+AGG 0.374412 1_4:+5909950 None:intergenic
GAACAATCTGTCCCATAAAC+TGG 0.386716 1_4:+5909707 None:intergenic
GTCTAGAGATGTGGCTTAGC+TGG 0.391311 1_4:-5909065 Msa0146180:three_prime_UTR
ATAGTGCAAGTAGGAAATAA+TGG 0.392038 1_4:+5908962 None:intergenic
GATGCATACTTGAGGAAAAC+TGG 0.393679 1_4:-5911578 Msa0146180:CDS
CTGTTCTTGTGGGAAATGTT+CGG 0.404565 1_4:+5912794 None:intergenic
TTTGTCGTTGTGGAGTTTCA+TGG 0.408606 1_4:+5912471 None:intergenic
GTGATTCCGGTGGTTTCACC+AGG 0.410208 1_4:+5912514 None:intergenic
TACATATGCCAAATATTTAG+AGG 0.415258 1_4:-5911468 Msa0146180:CDS
ATAGAAGGATACCACGTGTC+AGG 0.419281 1_4:+5912391 None:intergenic
GAAACCGTTATATTCTACTT+TGG 0.421202 1_4:+5908679 None:intergenic
AAAATGGATATTGTAGAAAT+GGG 0.422336 1_4:+5911412 None:intergenic
CGAACACATTGTTGATGATT+CGG 0.423663 1_4:-5912317 Msa0146180:CDS
ATCTTCTTCTTATCCACCGT+TGG 0.448233 1_4:-5912569 Msa0146180:CDS
ATTTGCCTTACTTATTGCTA+TGG 0.459682 1_4:-5909134 Msa0146180:three_prime_UTR
TGAAGATTTCTTTCTTATTG+TGG 0.459734 1_4:-5908985 Msa0146180:three_prime_UTR
TTTCCAAAGCTGCCAGGGCC+AGG 0.463813 1_4:-5909172 Msa0146180:three_prime_UTR
TTCTCATATAACTGCTGGCC+AGG 0.466119 1_4:-5911390 Msa0146180:CDS
TTAGGTATCTGAAAAGCTCC+TGG 0.483336 1_4:-5909968 Msa0146180:intron
ATTTGTGCAGCATTGGGGTC+GGG 0.486709 1_4:-5909770 Msa0146180:intron
CCATGGTTGTTGCAGTTGTG+TGG 0.488948 1_4:+5912705 None:intergenic
AAGATTCTGCACTGTTCTTG+TGG 0.491944 1_4:+5912783 None:intergenic
AAAATCCATAGCAATAAGTA+AGG 0.492889 1_4:+5909129 None:intergenic
GGTGTTGAAGCGTGTTCGAT+TGG 0.492898 1_4:+5912654 None:intergenic
GAAGGATCTAGAATGGTTGA+AGG 0.493575 1_4:-5911531 Msa0146180:CDS
TATGTAGTACCAGGTGAACT+TGG 0.493729 1_4:+5911485 None:intergenic
ATAAGAAGAAGATGATGAAG+AGG 0.499309 1_4:+5912579 None:intergenic
AGTACCAGGTGAACTTGGAT+TGG 0.500411 1_4:+5911490 None:intergenic
AGTGTTGATGATGGTGGGAA+TGG 0.502339 1_4:+5912679 None:intergenic
AGGAGCTGGAGTTCTGCAAA+TGG 0.505314 1_4:-5909939 Msa0146180:CDS
AATTTGTGCAGCATTGGGGT+CGG 0.511624 1_4:-5909771 Msa0146180:intron
AATTACATGTGAAGTTTCTG+TGG 0.514825 1_4:+5908857 None:intergenic
TGAAAAGCTCCTGGAAGGTA+AGG 0.515112 1_4:-5909959 Msa0146180:CDS
CGTCTGATCATCTTATAAAG+AGG 0.518449 1_4:-5909685 Msa0146180:exon
GTACCAGGTGAACTTGGATT+GGG 0.518612 1_4:+5911491 None:intergenic
GGCAACGAACCTCATCTCTT+CGG 0.520653 1_4:+5912492 None:intergenic
AACGAAATTGTCACTCCACC+TGG 0.522060 1_4:+5909096 None:intergenic
CAAATGGGAAGGAGATGTAC+AGG 0.523655 1_4:-5909923 Msa0146180:CDS
AGTGGTATTGTTGACGGTGT+TGG 0.527238 1_4:+5912447 None:intergenic
GTGTTGAAGCGTGTTCGATT+GGG 0.527957 1_4:+5912655 None:intergenic
AACAGAAGTGGTATTGTTGA+CGG 0.534137 1_4:+5912441 None:intergenic
CATCTCTTCGGTGATTCCGG+TGG 0.534391 1_4:+5912504 None:intergenic
AGATTCTGCACTGTTCTTGT+GGG 0.535909 1_4:+5912784 None:intergenic
TCAGTAATACTGCAATATCA+TGG 0.537215 1_4:+5909005 None:intergenic
CATGGTTGTTGCAGTTGTGT+GGG 0.539398 1_4:+5912706 None:intergenic
ATACTTGAGGAAAACTGGAT+TGG 0.541626 1_4:-5911573 Msa0146180:CDS
GGAGCTGGAGTTCTGCAAAT+GGG 0.549742 1_4:-5909938 Msa0146180:CDS
TTCATTAGAGTCTAGAGATG+TGG 0.552909 1_4:-5909074 Msa0146180:three_prime_UTR
TGGGAGCGTTAACTGTAGCT+TGG 0.555696 1_4:-5909261 Msa0146180:three_prime_UTR
CTAGAATGGTTGAAGGAACA+AGG 0.560120 1_4:-5911524 Msa0146180:CDS
TAACAGATGTAACCTGGCCC+TGG 0.562262 1_4:+5909160 None:intergenic
ACTGGATTGGAAAGATCTGA+AGG 0.563903 1_4:-5911560 Msa0146180:CDS
GCTCCTGGAAGGTAAGGAGC+TGG 0.564683 1_4:-5909953 Msa0146180:CDS
TTGGGAAGTGTTGATGATGG+TGG 0.574296 1_4:+5912673 None:intergenic
GTCTTCTACTACAACAGAAG+TGG 0.581954 1_4:+5912429 None:intergenic
TGATCATCTTATAAAGAGGC+CGG 0.584709 1_4:-5909681 Msa0146180:exon
TGGCCAGGTTATTACAAAGC+AGG 0.585011 1_4:-5911375 Msa0146180:intron
ACGTGGTATCCTTCTATGAA+AGG 0.586528 1_4:-5912385 Msa0146180:CDS
CGATTGGGAAGTGTTGATGA+TGG 0.589944 1_4:+5912670 None:intergenic
GTACCTGCTTTGTAATAACC+TGG 0.590707 1_4:+5911372 None:intergenic
CAAATATTTAGAGGAACTTG+CGG 0.593836 1_4:-5911459 Msa0146180:CDS
GTATCTGAAAAGCTCCTGGA+AGG 0.595672 1_4:-5909964 Msa0146180:CDS
TGGGAAGTGTTGATGATGGT+GGG 0.598542 1_4:+5912674 None:intergenic
TAGAAGGATACCACGTGTCA+GGG 0.599723 1_4:+5912392 None:intergenic
TATTTGGCATATGTAGTACC+AGG 0.604625 1_4:+5911476 None:intergenic
ATTCCCAATCCAAGTTCACC+TGG 0.607725 1_4:-5911494 Msa0146180:CDS
CTGGAGTTCTGCAAATGGGA+AGG 0.610060 1_4:-5909934 Msa0146180:CDS
CTTTACCCTGGTGAAACCAC+CGG 0.610733 1_4:-5912520 Msa0146180:CDS
TAGAAATGGGAAAGAAACAA+AGG 0.614055 1_4:+5911425 None:intergenic
AATCCATAACAGATGTAACC+TGG 0.614119 1_4:+5909154 None:intergenic
ATTGAATTGCCATAAATGTG+AGG 0.616747 1_4:+5909199 None:intergenic
GAATTGCAGATGCATACTTG+AGG 0.618600 1_4:-5911586 Msa0146180:intron
CAGGGTAAAGTCTTCGATAG+CGG 0.625933 1_4:+5912533 None:intergenic
GTGTCGCTATGTAGGATAGG+GGG 0.626884 1_4:-5909290 Msa0146180:intron
CCACACAACTGCAACAACCA+TGG 0.633786 1_4:-5912705 Msa0146180:CDS
TCATCTTATAAAGAGGCCGG+TGG 0.633941 1_4:-5909678 Msa0146180:exon
TTGTAATTTGTGCAGCATTG+GGG 0.639959 1_4:-5909775 Msa0146180:intron
CATCTTATAAAGAGGCCGGT+GGG 0.641764 1_4:-5909677 Msa0146180:exon
CCGGAATCACCGAAGAGATG+AGG 0.642207 1_4:-5912501 Msa0146180:CDS
AGTGTCGCTATGTAGGATAG+GGG 0.644548 1_4:-5909291 Msa0146180:intron
CGCTATCGAAGACTTTACCC+TGG 0.646534 1_4:-5912532 Msa0146180:CDS
AGCCACAAAATAGTGCAAGT+AGG 0.650331 1_4:+5908953 None:intergenic
ACTTCTGTTGTAGTAGAAGA+CGG 0.653998 1_4:-5912427 Msa0146180:CDS
GTTGTAGTAGAAGACGGTGA+AGG 0.660451 1_4:-5912421 Msa0146180:CDS
GAAGCTTAACGTGCTTGCAG+AGG 0.660843 1_4:-5909878 Msa0146180:intron
TGTCGCTATGTAGGATAGGG+GGG 0.665338 1_4:-5909289 Msa0146180:intron
TGATTCCGGTGGTTTCACCA+GGG 0.673875 1_4:+5912515 None:intergenic
AGAAATTACAGTAAAGACTG+AGG 0.689610 1_4:+5908751 None:intergenic
GATGGTGGGAATGGTAACCA+TGG 0.718374 1_4:+5912688 None:intergenic
AAGGACAAATCCCTGACACG+TGG 0.718573 1_4:-5912402 Msa0146180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAAATTTTTTTAT+AGG - chr1_4:5910804-5910823 Msa0146180:intron 0.0%
!!! TTTTTTGAATGATTTTTTTT+TGG + chr1_4:5910355-5910374 None:intergenic 10.0%
!! AATCATTCAAAAAAAAAAAT+TGG - chr1_4:5910361-5910380 Msa0146180:intron 10.0%
!!! TCTTTATTTTTTTTTAATCT+GGG + chr1_4:5910928-5910947 None:intergenic 10.0%
!!! ATCTTTATTTTTTTTTAATC+TGG + chr1_4:5910929-5910948 None:intergenic 10.0%
!! TGTTAAATTAAAAAAAATCA+AGG + chr1_4:5911283-5911302 None:intergenic 10.0%
!! TAACAAAATCAAAATCAAAT+TGG + chr1_4:5909560-5909579 None:intergenic 15.0%
!! TAATAGTTGTTTATTCAAAT+AGG - chr1_4:5909814-5909833 Msa0146180:intron 15.0%
!! AATAGTTGTTTATTCAAATA+GGG - chr1_4:5909815-5909834 Msa0146180:intron 15.0%
!!! ATAAATTTCACAAATGTTTT+AGG + chr1_4:5909841-5909860 None:intergenic 15.0%
!!! TATTTGATAGAATTTTTTGT+TGG - chr1_4:5910666-5910685 Msa0146180:intron 15.0%
!!! ATTTGATAGAATTTTTTGTT+GGG - chr1_4:5910667-5910686 Msa0146180:intron 15.0%
!!! TTTAATTTAACACAGATATT+AGG - chr1_4:5911291-5911310 Msa0146180:intron 15.0%
!!! TTATACTTATTATTTTTGTG+TGG - chr1_4:5911694-5911713 Msa0146180:intron 15.0%
!!! ACTTTGAATTCATTAATTTG+AGG - chr1_4:5909272-5909291 Msa0146180:three_prime_UTR 20.0%
!!! AATCAAATTGGTTTCATTTA+AGG + chr1_4:5909548-5909567 None:intergenic 20.0%
!!! TCGCAAAATAACAAATTTTA+TGG - chr1_4:5909682-5909701 Msa0146180:exon 20.0%
!!! TTGATTTGATTTAGTTATGA+TGG - chr1_4:5909863-5909882 Msa0146180:intron 20.0%
!! AAAATGGATATTGTAGAAAT+GGG + chr1_4:5910083-5910102 None:intergenic 20.0%
!! AAAAATGGATATTGTAGAAA+TGG + chr1_4:5910084-5910103 None:intergenic 20.0%
!! AGCTAATTTAAACTTATATG+AGG - chr1_4:5910392-5910411 Msa0146180:intron 20.0%
!! GATTTATTGTTTAACAATCA+AGG - chr1_4:5910414-5910433 Msa0146180:intron 20.0%
!!! TTTTTTTTTAATCCTGATGA+TGG - chr1_4:5910525-5910544 Msa0146180:intron 20.0%
!!! TTTTTTTTAATCCTGATGAT+GGG - chr1_4:5910526-5910545 Msa0146180:intron 20.0%
!! ATAATGATAAAACACAAACA+CGG + chr1_4:5910777-5910796 None:intergenic 20.0%
!!! TTTTTTATAGGTAAGTGAAA+CGG - chr1_4:5910816-5910835 Msa0146180:intron 20.0%
!!! ATTTTTTTTTAATCTGGGAA+TGG + chr1_4:5910923-5910942 None:intergenic 20.0%
!! TAAAAAGTTAGTGATAAGAT+AGG - chr1_4:5910996-5911015 Msa0146180:intron 20.0%
!! AAAAAGTTAGTGATAAGATA+GGG - chr1_4:5910997-5911016 Msa0146180:intron 20.0%
!! TCTTTAATAAAGAATTCCTT+AGG + chr1_4:5911435-5911454 None:intergenic 20.0%
!!! TTTTTCCATTTAAGCATTTT+GGG + chr1_4:5912033-5912052 None:intergenic 20.0%
!!! ATTTTTCCATTTAAGCATTT+TGG + chr1_4:5912034-5912053 None:intergenic 20.0%
!!! ACATTTGATTGCATTATTTT+TGG - chr1_4:5912112-5912131 Msa0146180:intron 20.0%
!! CATGTAATTTATAAAAATGC+CGG - chr1_4:5912649-5912668 Msa0146180:CDS 20.0%
! TAAGTGTTTGTTTGGTTATA+TGG - chr1_4:5909237-5909256 Msa0146180:three_prime_UTR 25.0%
!!! GTTTGTAGCTTATTTCTATA+AGG - chr1_4:5909492-5909511 Msa0146180:intron 25.0%
! TTGTGTAACAAAACACTTAT+AGG - chr1_4:5909617-5909636 Msa0146180:intron 25.0%
! ACAAAACACTTATAGGATAT+AGG - chr1_4:5909624-5909643 Msa0146180:intron 25.0%
!!! ATGCTCATTGTTTTAAATTG+TGG - chr1_4:5909657-5909676 Msa0146180:three_prime_UTR 25.0%
! TTTCAATTATGGTTGTAGTT+AGG + chr1_4:5909770-5909789 None:intergenic 25.0%
!! TAAGCAATGGTTTTCAATTA+TGG + chr1_4:5909781-5909800 None:intergenic 25.0%
! TACATATGCCAAATATTTAG+AGG - chr1_4:5910024-5910043 Msa0146180:intron 25.0%
! AAAGTTTCTTATAAGCATAC+AGG - chr1_4:5910217-5910236 Msa0146180:intron 25.0%
! AAGTTTCTTATAAGCATACA+GGG - chr1_4:5910218-5910237 Msa0146180:intron 25.0%
!!! TTTTTTTTTGGCTTTCAAAC+CGG + chr1_4:5910343-5910362 None:intergenic 25.0%
!!! ATTTTTTGTTGGGAAATATG+AGG - chr1_4:5910677-5910696 Msa0146180:intron 25.0%
! AAATGAATGAAGGAAATATG+TGG - chr1_4:5910740-5910759 Msa0146180:intron 25.0%
! GATATAAAGTATAAGGTAAG+GGG + chr1_4:5910856-5910875 None:intergenic 25.0%
! GGATATAAAGTATAAGGTAA+GGG + chr1_4:5910857-5910876 None:intergenic 25.0%
! AGGATATAAAGTATAAGGTA+AGG + chr1_4:5910858-5910877 None:intergenic 25.0%
! TACCTTATACTTTATATCCT+TGG - chr1_4:5910858-5910877 Msa0146180:intron 25.0%
! ACCTTATACTTTATATCCTT+GGG - chr1_4:5910859-5910878 Msa0146180:intron 25.0%
!!! AAGAGTTGAAGTTTTAAGTT+TGG - chr1_4:5911104-5911123 Msa0146180:intron 25.0%
! GAATAATAACTCTTGAATGT+TGG - chr1_4:5911184-5911203 Msa0146180:intron 25.0%
! ACATTGTCTTTCCAATATTT+AGG - chr1_4:5911376-5911395 Msa0146180:CDS 25.0%
! CATTGTCTTTCCAATATTTA+GGG - chr1_4:5911377-5911396 Msa0146180:CDS 25.0%
! ATTGTCTTTCCAATATTTAG+GGG - chr1_4:5911378-5911397 Msa0146180:CDS 25.0%
! ATGCTTAAAGAAATTCTTGA+TGG + chr1_4:5911483-5911502 None:intergenic 25.0%
! TACTAGGAATTCTTTAATTG+TGG - chr1_4:5911642-5911661 Msa0146180:intron 25.0%
! AAAAAAGTCATTCCAGTTTA+TGG - chr1_4:5911773-5911792 Msa0146180:intron 25.0%
! AAAAAGTCATTCCAGTTTAT+GGG - chr1_4:5911774-5911793 Msa0146180:intron 25.0%
!!! TAATAGCAGTGACTTTTTTA+TGG - chr1_4:5911854-5911873 Msa0146180:intron 25.0%
!!! CTTCCTTTAACTTTTGAAAT+CGG - chr1_4:5911899-5911918 Msa0146180:intron 25.0%
!!! ATTTTAATTGATAGAGGATC+AGG - chr1_4:5911924-5911943 Msa0146180:intron 25.0%
! ATGTAAGAAACTTGACAATA+GGG + chr1_4:5912096-5912115 None:intergenic 25.0%
! AATGTAAGAAACTTGACAAT+AGG + chr1_4:5912097-5912116 None:intergenic 25.0%
!! ATATTTGCTGCAACAAAAAA+TGG + chr1_4:5912260-5912279 None:intergenic 25.0%
! AAAATCCATAGCAATAAGTA+AGG + chr1_4:5912366-5912385 None:intergenic 25.0%
!! CTTATTGCTATGGATTTTAT+CGG - chr1_4:5912368-5912387 Msa0146180:CDS 25.0%
! TGAAGATTTCTTTCTTATTG+TGG - chr1_4:5912507-5912526 Msa0146180:CDS 25.0%
!!! TAATTTTTGAGACATTTGGT+TGG - chr1_4:5912609-5912628 Msa0146180:CDS 25.0%
ATAAGAAGAAGATGATGAAG+AGG + chr1_4:5908916-5908935 None:intergenic 30.0%
GCAGTTATTAAGTGTTTGTT+TGG - chr1_4:5909229-5909248 Msa0146180:three_prime_UTR 30.0%
! AGGTTAAAAATAGCGTTTTG+AGG - chr1_4:5909292-5909311 Msa0146180:intron 30.0%
!! GCTTATTTCTATAAGGTATC+AGG - chr1_4:5909499-5909518 Msa0146180:intron 30.0%
ACACAATCATATAAGTGCTT+AGG + chr1_4:5909603-5909622 None:intergenic 30.0%
! AAATTTTATGGTCTCTGCAA+TGG - chr1_4:5909694-5909713 Msa0146180:CDS 30.0%
! AAGATCTGAAGGAATTTTGA+AGG - chr1_4:5909943-5909962 Msa0146180:CDS 30.0%
!! GAATTTTGAAGGATCTAGAA+TGG - chr1_4:5909954-5909973 Msa0146180:CDS 30.0%
CAAATATTTAGAGGAACTTG+CGG - chr1_4:5910033-5910052 Msa0146180:intron 30.0%
TAGAAATGGGAAAGAAACAA+AGG + chr1_4:5910070-5910089 None:intergenic 30.0%
CAGCAGTTATATGAGAAAAA+TGG + chr1_4:5910099-5910118 None:intergenic 30.0%
! CATTTTTCTCATATAACTGC+TGG - chr1_4:5910097-5910116 Msa0146180:intron 30.0%
! ACTTTTCCCATCTCTTAAAA+GGG - chr1_4:5910146-5910165 Msa0146180:intron 30.0%
AGGGAATCCAATCTATTTAT+AGG - chr1_4:5910165-5910184 Msa0146180:intron 30.0%
GGGAATCCAATCTATTTATA+GGG - chr1_4:5910166-5910185 Msa0146180:intron 30.0%
AAAGCTCCCTATAAATAGAT+TGG + chr1_4:5910175-5910194 None:intergenic 30.0%
! CTATTTATAGGGAGCTTTTA+TGG - chr1_4:5910177-5910196 Msa0146180:intron 30.0%
AGTTTCTTATAAGCATACAG+GGG - chr1_4:5910219-5910238 Msa0146180:intron 30.0%
ATTGTTTAACAATCAAGGTG+TGG - chr1_4:5910419-5910438 Msa0146180:intron 30.0%
ACTCTAGACATATGGTTAAA+GGG + chr1_4:5910466-5910485 None:intergenic 30.0%
AACTCTAGACATATGGTTAA+AGG + chr1_4:5910467-5910486 None:intergenic 30.0%
TTTCTTGTGGGTATTTGATT+TGG + chr1_4:5910604-5910623 None:intergenic 30.0%
! AGATGTGCAATTTTTCTTGT+GGG + chr1_4:5910616-5910635 None:intergenic 30.0%
! TAGATGTGCAATTTTTCTTG+TGG + chr1_4:5910617-5910636 None:intergenic 30.0%
CCTTATACTTTATATCCTTG+GGG - chr1_4:5910860-5910879 Msa0146180:intron 30.0%
! CTTTTTCTCAATCTCACTTA+TGG + chr1_4:5911025-5911044 None:intergenic 30.0%
! AATCACGAAGAATTTTGTGT+GGG - chr1_4:5911230-5911249 Msa0146180:intron 30.0%
!!! ATTCTGTTGTTGTTGCTTTT+AGG - chr1_4:5911506-5911525 Msa0146180:CDS 30.0%
!! TCACCGATTTCAAAAGTTAA+AGG + chr1_4:5911905-5911924 None:intergenic 30.0%
!!! TCGGTGATTTTAATTGATAG+AGG - chr1_4:5911918-5911937 Msa0146180:intron 30.0%
!! TATGTATGTCACTTTACGAT+TGG + chr1_4:5911996-5912015 None:intergenic 30.0%
!!! TGATTGCATTATTTTTGGTC+TGG - chr1_4:5912117-5912136 Msa0146180:intron 30.0%
TGCAACTATAAATTGTGTAG+TGG - chr1_4:5912148-5912167 Msa0146180:intron 30.0%
ATTGAATTGCCATAAATGTG+AGG + chr1_4:5912296-5912315 None:intergenic 30.0%
ATTTGCCTTACTTATTGCTA+TGG - chr1_4:5912358-5912377 Msa0146180:CDS 30.0%
TCAGTAATACTGCAATATCA+TGG + chr1_4:5912490-5912509 None:intergenic 30.0%
ATAGTGCAAGTAGGAAATAA+TGG + chr1_4:5912533-5912552 None:intergenic 30.0%
CAAACTACAGAGAACTTAAA+TGG + chr1_4:5912577-5912596 None:intergenic 30.0%
!!! CGAGTAATTTTTGAGACATT+TGG - chr1_4:5912605-5912624 Msa0146180:CDS 30.0%
AATTACATGTGAAGTTTCTG+TGG + chr1_4:5912638-5912657 None:intergenic 30.0%
! AAGAAAATGATGACGCTTAT+AGG - chr1_4:5912686-5912705 Msa0146180:CDS 30.0%
AGAAATTACAGTAAAGACTG+AGG + chr1_4:5912744-5912763 None:intergenic 30.0%
GAGAATGATGATTCTTCTTC+TGG + chr1_4:5908862-5908881 None:intergenic 35.0%
! TTTCTTTTTCTAACCAACGG+TGG + chr1_4:5908939-5908958 None:intergenic 35.0%
! CGGTTTCTTTTTCTAACCAA+CGG + chr1_4:5908942-5908961 None:intergenic 35.0%
AACAGAAGTGGTATTGTTGA+CGG + chr1_4:5909054-5909073 None:intergenic 35.0%
ACTTCTGTTGTAGTAGAAGA+CGG - chr1_4:5909065-5909084 Msa0146180:three_prime_UTR 35.0%
!! CGAACACATTGTTGATGATT+CGG - chr1_4:5909175-5909194 Msa0146180:three_prime_UTR 35.0%
AGAGCTTGTAGAATAAGCAA+TGG + chr1_4:5909794-5909813 None:intergenic 35.0%
ATACTTGAGGAAAACTGGAT+TGG - chr1_4:5909919-5909938 Msa0146180:CDS 35.0%
TATTTGGCATATGTAGTACC+AGG + chr1_4:5910019-5910038 None:intergenic 35.0%
CGCAAGTTCCTCTAAATATT+TGG + chr1_4:5910035-5910054 None:intergenic 35.0%
TTTAAGAGATGGGAAAAGTG+AGG + chr1_4:5910145-5910164 None:intergenic 35.0%
! CACTTTTCCCATCTCTTAAA+AGG - chr1_4:5910145-5910164 Msa0146180:intron 35.0%
!! TGGATTCCCTTTTAAGAGAT+GGG + chr1_4:5910155-5910174 None:intergenic 35.0%
!! TTGGATTCCCTTTTAAGAGA+TGG + chr1_4:5910156-5910175 None:intergenic 35.0%
GTTTCTTATAAGCATACAGG+GGG - chr1_4:5910220-5910239 Msa0146180:intron 35.0%
! ATATGTCTAGAGTTCGAATC+CGG - chr1_4:5910473-5910492 Msa0146180:intron 35.0%
!! TTTAATCCTGATGATGGGAA+TGG - chr1_4:5910531-5910550 Msa0146180:intron 35.0%
GAAATATGAGGAACAAGAGA+AGG - chr1_4:5910689-5910708 Msa0146180:intron 35.0%
GAACAAGAGTGAAGTAGAAT+GGG - chr1_4:5910711-5910730 Msa0146180:intron 35.0%
CCCCAAGGATATAAAGTATA+AGG + chr1_4:5910863-5910882 None:intergenic 35.0%
AGTCTTGAGGTTTAACTGTT+TGG - chr1_4:5910886-5910905 Msa0146180:intron 35.0%
! GTAAGCTAAATCTTGAGTTG+TGG + chr1_4:5911080-5911099 None:intergenic 35.0%
CTTAAAACTTCAACTCTTCG+AGG + chr1_4:5911102-5911121 None:intergenic 35.0%
TCTTGAATGTTGGATCAGTA+AGG - chr1_4:5911194-5911213 Msa0146180:intron 35.0%
CTTGAATGTTGGATCAGTAA+GGG - chr1_4:5911195-5911214 Msa0146180:intron 35.0%
! CAATCACGAAGAATTTTGTG+TGG - chr1_4:5911229-5911248 Msa0146180:intron 35.0%
AGATATTAGGAGAATGAGCA+AGG - chr1_4:5911304-5911323 Msa0146180:intron 35.0%
AGAATGAGCAAGGTAATTGT+AGG - chr1_4:5911314-5911333 Msa0146180:intron 35.0%
TCTTTCCAATATTTAGGGGT+GGG - chr1_4:5911382-5911401 Msa0146180:CDS 35.0%
! GTTGTAATTTGTGCAGCATT+GGG - chr1_4:5911716-5911735 Msa0146180:intron 35.0%
! TTGTAATTTGTGCAGCATTG+GGG - chr1_4:5911717-5911736 Msa0146180:intron 35.0%
CGTCTGATCATCTTATAAAG+AGG - chr1_4:5911807-5911826 Msa0146180:intron 35.0%
TGATCATCTTATAAAGAGGC+CGG - chr1_4:5911811-5911830 Msa0146180:intron 35.0%
TAATTGATAGAGGATCAGGA+AGG - chr1_4:5911928-5911947 Msa0146180:intron 35.0%
AATTGATAGAGGATCAGGAA+GGG - chr1_4:5911929-5911948 Msa0146180:intron 35.0%
!! TCCATTTAAGCATTTTGGGA+GGG + chr1_4:5912029-5912048 None:intergenic 35.0%
! TTCCATTTAAGCATTTTGGG+AGG + chr1_4:5912030-5912049 None:intergenic 35.0%
! ATAATTTTTCCAAAGCTGCC+AGG - chr1_4:5912314-5912333 Msa0146180:CDS 35.0%
! TAATTTTTCCAAAGCTGCCA+GGG - chr1_4:5912315-5912334 Msa0146180:CDS 35.0%
AATCCATAACAGATGTAACC+TGG + chr1_4:5912341-5912360 None:intergenic 35.0%
TTCATTAGAGTCTAGAGATG+TGG - chr1_4:5912418-5912437 Msa0146180:CDS 35.0%
! TTCCTACTTGCACTATTTTG+TGG - chr1_4:5912537-5912556 Msa0146180:CDS 35.0%
!! TTCTTTTTGACTGAAAGCAC+CGG + chr1_4:5912671-5912690 None:intergenic 35.0%
! CTGAGGTGCTAATTGTAAAA+TGG + chr1_4:5912727-5912746 None:intergenic 35.0%
TTCTGTATTGTAGCTGTTCT+AGG - chr1_4:5912760-5912779 Msa0146180:five_prime_UTR 35.0%
CTGTTCTTGTGGGAAATGTT+CGG + chr1_4:5908701-5908720 None:intergenic 40.0%
AGATTCTGCACTGTTCTTGT+GGG + chr1_4:5908711-5908730 None:intergenic 40.0%
AAGATTCTGCACTGTTCTTG+TGG + chr1_4:5908712-5908731 None:intergenic 40.0%
ATCTTCTTCTTATCCACCGT+TGG - chr1_4:5908923-5908942 Msa0146180:three_prime_UTR 40.0%
TTTGTCGTTGTGGAGTTTCA+TGG + chr1_4:5909024-5909043 None:intergenic 40.0%
GTCTTCTACTACAACAGAAG+TGG + chr1_4:5909066-5909085 None:intergenic 40.0%
ACGTGGTATCCTTCTATGAA+AGG - chr1_4:5909107-5909126 Msa0146180:three_prime_UTR 40.0%
CGAAGAAAGCCTTTCATAGA+AGG + chr1_4:5909119-5909138 None:intergenic 40.0%
GAAAGGCTTTCTTCGATTCT+TGG - chr1_4:5909124-5909143 Msa0146180:three_prime_UTR 40.0%
!! AAGCACTTCTGAGACTGTTT+GGG - chr1_4:5909437-5909456 Msa0146180:intron 40.0%
GAATTGCAGATGCATACTTG+AGG - chr1_4:5909906-5909925 Msa0146180:CDS 40.0%
GATGCATACTTGAGGAAAAC+TGG - chr1_4:5909914-5909933 Msa0146180:CDS 40.0%
! ACTGGATTGGAAAGATCTGA+AGG - chr1_4:5909932-5909951 Msa0146180:CDS 40.0%
! GAAGGATCTAGAATGGTTGA+AGG - chr1_4:5909961-5909980 Msa0146180:CDS 40.0%
CTAGAATGGTTGAAGGAACA+AGG - chr1_4:5909968-5909987 Msa0146180:intron 40.0%
TATGTAGTACCAGGTGAACT+TGG + chr1_4:5910010-5910029 None:intergenic 40.0%
GTACCTGCTTTGTAATAACC+TGG + chr1_4:5910123-5910142 None:intergenic 40.0%
GGATTCGAACTCTAGACATA+TGG + chr1_4:5910474-5910493 None:intergenic 40.0%
GGAACAAGAGTGAAGTAGAA+TGG - chr1_4:5910710-5910729 Msa0146180:intron 40.0%
AAGAGTGAAGTAGAATGGGA+AGG - chr1_4:5910715-5910734 Msa0146180:intron 40.0%
AGAGTGAAGTAGAATGGGAA+GGG - chr1_4:5910716-5910735 Msa0146180:intron 40.0%
TGGGAAGGGAAAATGAATGA+AGG - chr1_4:5910730-5910749 Msa0146180:intron 40.0%
! TTAATCTGGGAATGGACTCA+TGG + chr1_4:5910915-5910934 None:intergenic 40.0%
GTCTTTCCAATATTTAGGGG+TGG - chr1_4:5911381-5911400 Msa0146180:CDS 40.0%
GATTTCCCACCCCTAAATAT+TGG + chr1_4:5911390-5911409 None:intergenic 40.0%
TCTGATTCAGAGTTCACTAC+AGG + chr1_4:5911412-5911431 None:intergenic 40.0%
TGAACTCTGAATCAGACCTA+AGG - chr1_4:5911416-5911435 Msa0146180:CDS 40.0%
TTAGGTATCTGAAAAGCTCC+TGG - chr1_4:5911524-5911543 Msa0146180:CDS 40.0%
! GGTTGTAATTTGTGCAGCAT+TGG - chr1_4:5911715-5911734 Msa0146180:intron 40.0%
GAACAATCTGTCCCATAAAC+TGG + chr1_4:5911788-5911807 None:intergenic 40.0%
!! ATTTAAGCATTTTGGGAGGG+GGG + chr1_4:5912026-5912045 None:intergenic 40.0%
!! CATTTAAGCATTTTGGGAGG+GGG + chr1_4:5912027-5912046 None:intergenic 40.0%
!! CCATTTAAGCATTTTGGGAG+GGG + chr1_4:5912028-5912047 None:intergenic 40.0%
!!! GCGACACTCGAACATTTTTT+AGG + chr1_4:5912189-5912208 None:intergenic 40.0%
! TGGATTTTATCGGTATAGCC+AGG - chr1_4:5912378-5912397 Msa0146180:CDS 40.0%
! ATTTTATCGGTATAGCCAGG+TGG - chr1_4:5912381-5912400 Msa0146180:CDS 40.0%
AGCCACAAAATAGTGCAAGT+AGG + chr1_4:5912542-5912561 None:intergenic 40.0%
CATGGTTGTTGCAGTTGTGT+GGG + chr1_4:5908789-5908808 None:intergenic 45.0%
!! AGTGTTGATGATGGTGGGAA+TGG + chr1_4:5908816-5908835 None:intergenic 45.0%
!! TGGGAAGTGTTGATGATGGT+GGG + chr1_4:5908821-5908840 None:intergenic 45.0%
!! TTGGGAAGTGTTGATGATGG+TGG + chr1_4:5908822-5908841 None:intergenic 45.0%
!! CGATTGGGAAGTGTTGATGA+TGG + chr1_4:5908825-5908844 None:intergenic 45.0%
GTGTTGAAGCGTGTTCGATT+GGG + chr1_4:5908840-5908859 None:intergenic 45.0%
CAGGGTAAAGTCTTCGATAG+CGG + chr1_4:5908962-5908981 None:intergenic 45.0%
AGTGGTATTGTTGACGGTGT+TGG + chr1_4:5909048-5909067 None:intergenic 45.0%
GTTGTAGTAGAAGACGGTGA+AGG - chr1_4:5909071-5909090 Msa0146180:three_prime_UTR 45.0%
TAGAAGGATACCACGTGTCA+GGG + chr1_4:5909103-5909122 None:intergenic 45.0%
ATAGAAGGATACCACGTGTC+AGG + chr1_4:5909104-5909123 None:intergenic 45.0%
!! CAAGCACTTCTGAGACTGTT+TGG - chr1_4:5909436-5909455 Msa0146180:intron 45.0%
GGCTGATGAGGTTGAAATTG+CGG + chr1_4:5909728-5909747 None:intergenic 45.0%
ATTCCCAATCCAAGTTCACC+TGG - chr1_4:5909998-5910017 Msa0146180:intron 45.0%
GTACCAGGTGAACTTGGATT+GGG + chr1_4:5910004-5910023 None:intergenic 45.0%
AGTACCAGGTGAACTTGGAT+TGG + chr1_4:5910005-5910024 None:intergenic 45.0%
TTCTCATATAACTGCTGGCC+AGG - chr1_4:5910102-5910121 Msa0146180:intron 45.0%
TGGCCAGGTTATTACAAAGC+AGG - chr1_4:5910117-5910136 Msa0146180:intron 45.0%
TAAGCATACAGGGGGAATAC+CGG - chr1_4:5910228-5910247 Msa0146180:intron 45.0%
TTCCCAGGAGGAACAACATT+TGG - chr1_4:5910257-5910276 Msa0146180:intron 45.0%
TAGAGTTCGAATCCGGATGA+TGG - chr1_4:5910480-5910499 Msa0146180:intron 45.0%
AGAGTTCGAATCCGGATGAT+GGG - chr1_4:5910481-5910500 Msa0146180:intron 45.0%
!! ATCCTTGGGGATTAGTCTTG+AGG - chr1_4:5910873-5910892 Msa0146180:intron 45.0%
AACCTCAAGACTAATCCCCA+AGG + chr1_4:5910878-5910897 None:intergenic 45.0%
GTATCTGAAAAGCTCCTGGA+AGG - chr1_4:5911528-5911547 Msa0146180:CDS 45.0%
TGAAAAGCTCCTGGAAGGTA+AGG - chr1_4:5911533-5911552 Msa0146180:CDS 45.0%
CAAATGGGAAGGAGATGTAC+AGG - chr1_4:5911569-5911588 Msa0146180:CDS 45.0%
GCTTGCAGAGGTAGATTACT+AGG - chr1_4:5911626-5911645 Msa0146180:intron 45.0%
! AATTTGTGCAGCATTGGGGT+CGG - chr1_4:5911721-5911740 Msa0146180:intron 45.0%
TCATCTTATAAAGAGGCCGG+TGG - chr1_4:5911814-5911833 Msa0146180:intron 45.0%
CATCTTATAAAGAGGCCGGT+GGG - chr1_4:5911815-5911834 Msa0146180:intron 45.0%
!! TTTAAGCATTTTGGGAGGGG+GGG + chr1_4:5912025-5912044 None:intergenic 45.0%
CCCCTCCCAAAATGCTTAAA+TGG - chr1_4:5912025-5912044 Msa0146180:intron 45.0%
! ATGTTCGAGTGTCGCTATGT+AGG - chr1_4:5912194-5912213 Msa0146180:intron 45.0%
! GAGTGTCGCTATGTAGGATA+GGG - chr1_4:5912200-5912219 Msa0146180:intron 45.0%
! AGTGTCGCTATGTAGGATAG+GGG - chr1_4:5912201-5912220 Msa0146180:intron 45.0%
GTTGTCACGCCTCACATTTA+TGG - chr1_4:5912284-5912303 Msa0146180:intron 45.0%
AACGAAATTGTCACTCCACC+TGG + chr1_4:5912399-5912418 None:intergenic 45.0%
CCATGGTTGTTGCAGTTGTG+TGG + chr1_4:5908790-5908809 None:intergenic 50.0%
CCACACAACTGCAACAACCA+TGG - chr1_4:5908787-5908806 Msa0146180:three_prime_UTR 50.0%
!! GATGGTGGGAATGGTAACCA+TGG + chr1_4:5908807-5908826 None:intergenic 50.0%
! GGTGTTGAAGCGTGTTCGAT+TGG + chr1_4:5908841-5908860 None:intergenic 50.0%
CGCTATCGAAGACTTTACCC+TGG - chr1_4:5908960-5908979 Msa0146180:three_prime_UTR 50.0%
CTTTACCCTGGTGAAACCAC+CGG - chr1_4:5908972-5908991 Msa0146180:three_prime_UTR 50.0%
TGATTCCGGTGGTTTCACCA+GGG + chr1_4:5908980-5908999 None:intergenic 50.0%
CCTCATCTCTTCGGTGATTC+CGG + chr1_4:5908994-5909013 None:intergenic 50.0%
GGCAACGAACCTCATCTCTT+CGG + chr1_4:5909003-5909022 None:intergenic 50.0%
!!! CGGTGTTGGTTTTGTCGTTG+TGG + chr1_4:5909034-5909053 None:intergenic 50.0%
AAGGACAAATCCCTGACACG+TGG - chr1_4:5909090-5909109 Msa0146180:three_prime_UTR 50.0%
!! AGTCTCAGAAGTGCTTGCGT+CGG + chr1_4:5909433-5909452 None:intergenic 50.0%
CCTTTGTATTGCGGCTGATG+AGG + chr1_4:5909740-5909759 None:intergenic 50.0%
CCTCATCAGCCGCAATACAA+AGG - chr1_4:5909737-5909756 Msa0146180:CDS 50.0%
GGCTGTGAGCCTTTGTATTG+CGG + chr1_4:5909749-5909768 None:intergenic 50.0%
AAGCATACAGGGGGAATACC+GGG - chr1_4:5910229-5910248 Msa0146180:intron 50.0%
GGCCAAATGTTGTTCCTCCT+GGG + chr1_4:5910262-5910281 None:intergenic 50.0%
TGGCCAAATGTTGTTCCTCC+TGG + chr1_4:5910263-5910282 None:intergenic 50.0%
ATTAGTCGCCCACCATTGGT+GGG - chr1_4:5910310-5910329 Msa0146180:intron 50.0%
!! TCGAATCCGGATGATGGGAA+TGG - chr1_4:5910486-5910505 Msa0146180:intron 50.0%
GCATCTCCATTCCCATCATC+CGG + chr1_4:5910495-5910514 None:intergenic 50.0%
GCATCTCCATTCCCATCATC+AGG + chr1_4:5910495-5910514 None:intergenic 50.0%
AGGAGCTGGAGTTCTGCAAA+TGG - chr1_4:5911553-5911572 Msa0146180:CDS 50.0%
GGAGCTGGAGTTCTGCAAAT+GGG - chr1_4:5911554-5911573 Msa0146180:CDS 50.0%
CTGGAGTTCTGCAAATGGGA+AGG - chr1_4:5911558-5911577 Msa0146180:CDS 50.0%
GAAGCTTAACGTGCTTGCAG+AGG - chr1_4:5911614-5911633 Msa0146180:intron 50.0%
! ATTTGTGCAGCATTGGGGTC+GGG - chr1_4:5911722-5911741 Msa0146180:intron 50.0%
CCAAAAAACAGAGAGCCCAC+CGG + chr1_4:5911833-5911852 None:intergenic 50.0%
! CGAGTGTCGCTATGTAGGAT+AGG - chr1_4:5912199-5912218 Msa0146180:intron 50.0%
! GTGTCGCTATGTAGGATAGG+GGG - chr1_4:5912202-5912221 Msa0146180:intron 50.0%
TGTCGCTATGTAGGATAGGG+GGG - chr1_4:5912203-5912222 Msa0146180:intron 50.0%
!! TGGGAGCGTTAACTGTAGCT+TGG - chr1_4:5912231-5912250 Msa0146180:intron 50.0%
TAACAGATGTAACCTGGCCC+TGG + chr1_4:5912335-5912354 None:intergenic 50.0%
GGGCCAGGTTACATCTGTTA+TGG - chr1_4:5912335-5912354 Msa0146180:CDS 50.0%
GTCTAGAGATGTGGCTTAGC+TGG - chr1_4:5912427-5912446 Msa0146180:CDS 50.0%
GTGATTCCGGTGGTTTCACC+AGG + chr1_4:5908981-5909000 None:intergenic 55.0%
CATCTCTTCGGTGATTCCGG+TGG + chr1_4:5908991-5909010 None:intergenic 55.0%
CCGGAATCACCGAAGAGATG+AGG - chr1_4:5908991-5909010 Msa0146180:three_prime_UTR 55.0%
GAATACCGGGTTCGATTCCC+AGG - chr1_4:5910242-5910261 Msa0146180:intron 55.0%
TTCCTCCTGGGAATCGAACC+CGG + chr1_4:5910250-5910269 None:intergenic 55.0%
CTAATCCGGCTCATGCGTAG+AGG + chr1_4:5910295-5910314 None:intergenic 55.0%
!! CCAATGGTGGGCGACTAATC+CGG + chr1_4:5910309-5910328 None:intergenic 55.0%
! GATTAGTCGCCCACCATTGG+TGG - chr1_4:5910309-5910328 Msa0146180:intron 55.0%
GTTTCCGACCCACCAATGGT+GGG + chr1_4:5910321-5910340 None:intergenic 55.0%
! ACCATTGGTGGGTCGGAAAC+CGG - chr1_4:5910321-5910340 Msa0146180:intron 55.0%
ACTCCAGCTCCTTACCTTCC+AGG + chr1_4:5911545-5911564 None:intergenic 55.0%
!!! CCGGTGGGCTCTCTGTTTTT+TGG - chr1_4:5911830-5911849 Msa0146180:intron 55.0%
TGTAGGATAGGGGGGCAGTT+TGG - chr1_4:5912211-5912230 Msa0146180:intron 55.0%
GTAGGATAGGGGGGCAGTTT+GGG - chr1_4:5912212-5912231 Msa0146180:intron 55.0%
TACCGGGTTCGATTCCCAGG+AGG - chr1_4:5910245-5910264 Msa0146180:intron 60.0%
! ATGCGTAGAGGCATGCGCAC+TGG + chr1_4:5910283-5910302 None:intergenic 60.0%
GCATGCCTCTACGCATGAGC+CGG - chr1_4:5910287-5910306 Msa0146180:intron 60.0%
!! CCGGATTAGTCGCCCACCAT+TGG - chr1_4:5910306-5910325 Msa0146180:intron 60.0%
GGTTTCCGACCCACCAATGG+TGG + chr1_4:5910322-5910341 None:intergenic 60.0%
! ACCGGTTTCCGACCCACCAA+TGG + chr1_4:5910325-5910344 None:intergenic 60.0%
GCTCCTGGAAGGTAAGGAGC+TGG - chr1_4:5911539-5911558 Msa0146180:CDS 60.0%
TTTCCAAAGCTGCCAGGGCC+AGG - chr1_4:5912320-5912339 Msa0146180:CDS 60.0%
TAACCTGGCCCTGGCAGCTT+TGG + chr1_4:5912326-5912345 None:intergenic 60.0%
! GTCGCCCACCATTGGTGGGT+CGG - chr1_4:5910314-5910333 Msa0146180:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5908686 5912828 5908686 ID=Msa0146180;Name=Msa0146180
chr1_4 mRNA 5908686 5912828 5908686 ID=Msa0146180-mRNA-1;Parent=Msa0146180;Name=Msa0146180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=82|1|1|1|0.75|0.6|5|664|288
chr1_4 exon 5908686 5909298 5908686 ID=Msa0146180-mRNA-1:exon:2560;Parent=Msa0146180-mRNA-1
chr1_4 exon 5909639 5909782 5909639 ID=Msa0146180-mRNA-1:exon:2559;Parent=Msa0146180-mRNA-1
chr1_4 exon 5909879 5909986 5909879 ID=Msa0146180-mRNA-1:exon:2558;Parent=Msa0146180-mRNA-1
chr1_4 exon 5911376 5911599 5911376 ID=Msa0146180-mRNA-1:exon:2557;Parent=Msa0146180-mRNA-1
chr1_4 exon 5912305 5912828 5912305 ID=Msa0146180-mRNA-1:exon:2556;Parent=Msa0146180-mRNA-1
chr1_4 five_prime_UTR 5912747 5912828 5912747 ID=Msa0146180-mRNA-1:five_prime_utr;Parent=Msa0146180-mRNA-1
chr1_4 CDS 5912305 5912746 5912305 ID=Msa0146180-mRNA-1:cds;Parent=Msa0146180-mRNA-1
chr1_4 CDS 5911376 5911599 5911376 ID=Msa0146180-mRNA-1:cds;Parent=Msa0146180-mRNA-1
chr1_4 CDS 5909879 5909986 5909879 ID=Msa0146180-mRNA-1:cds;Parent=Msa0146180-mRNA-1
chr1_4 CDS 5909690 5909782 5909690 ID=Msa0146180-mRNA-1:cds;Parent=Msa0146180-mRNA-1
chr1_4 three_prime_UTR 5909639 5909689 5909639 ID=Msa0146180-mRNA-1:three_prime_utr;Parent=Msa0146180-mRNA-1
chr1_4 three_prime_UTR 5908686 5909298 5908686 ID=Msa0146180-mRNA-1:three_prime_utr;Parent=Msa0146180-mRNA-1
Gene Sequence

>Msa0146180

ATGTTGTTAACAGCGAAACCCACACAACTGCAACAACCATGGTTACCATTCCCACCATCATCAACACTTCCCAATCGAACACGCTTCAACACCAGAAGAAGAATCATCATTCTCAACAACAGCAACGAAAACAACAATAGTAACTCCTCTTCATCATCTTCTTCTTATCCACCGTTGGTTAGAAAAAGAAACCGCTATCGAAGACTTTACCCTGGTGAAACCACCGGAATCACCGAAGAGATGAGGTTCGTTGCCATGAAACTCCACAACGACAAAACCAACACCGTCAACAATACCACTTCTGTTGTAGTAGAAGACGGTGAAGGACAAATCCCTGACACGTGGTATCCTTCTATGAAAGGCTTTCTTCGATTCTTGGTTGATAATCAACTAGTTTTTGCTACACTCGAACACATTGTTGATGATTCGGATAATGTTTCATATGCATACTTGAGGAAAACTGGATTGGAAAGATCTGAAGGAATTTTGAAGGATCTAGAATGGTTGAAGGAACAAGGTGTTGAGATTCCCAATCCAAGTTCACCTGGTACTACATATGCCAAATATTTAGAGGAACTTGCGGAAAGAAGCGCACCTTTGTTTCTTTCCCATTTCTACAATATCCATTTTTCTCATATAACTGCTGGCCAGGTTATTACAAAGCAGGTATCTGAAAAGCTCCTGGAAGGTAAGGAGCTGGAGTTCTGCAAATGGGAAGGAGATGTACAGGAAATGCTGAAAGATGTACGTGAGAAGCTTAACGTGCTTGCAGAGCATTGGGGTCGGGATGAGAAAAATAAATGTTTAAGAGAAACAAAAAAGTCATTCCAGTTTATGGGACAGATTGTTCGTCTGATCATCTTATAA

Protein sequence

>Msa0146180

MLLTAKPTQLQQPWLPFPPSSTLPNRTRFNTRRRIIILNNSNENNNSNSSSSSSSYPPLVRKRNRYRRLYPGETTGITEEMRFVAMKLHNDKTNTVNNTTSVVVEDGEGQIPDTWYPSMKGFLRFLVDNQLVFATLEHIVDDSDNVSYAYLRKTGLERSEGILKDLEWLKEQGVEIPNPSSPGTTYAKYLEELAERSAPLFLSHFYNIHFSHITAGQVITKQVSEKLLEGKELEFCKWEGDVQEMLKDVREKLNVLAEHWGRDEKNKCLRETKKSFQFMGQIVRLIIL*