AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1010140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010140 MtrunA17_Chr7g0221181 92.857 224 15 1 1 224 1 223 2.28e-157 434
Msa1010140 MtrunA17_Chr5g0397281 33.103 145 97 0 78 222 82 226 3.04e-28 107
Msa1010140 MtrunA17_Chr3g0126191 27.053 207 139 3 15 221 34 228 7.47e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010140 AT1G71480.1 55.605 223 84 4 9 224 2 216 4.64e-81 241
Msa1010140 AT1G71480.3 51.351 185 75 4 9 186 2 178 7.19e-56 176
Msa1010140 AT1G71480.2 45.139 144 65 3 22 159 16 151 8.15e-35 121
Msa1010140 AT5G41470.1 37.931 145 90 0 78 222 74 218 1.13e-34 125

Find 53 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTAGTAACTGAATT+TGG 0.196315 7_1:-12825802 None:intergenic
ACTAGTGTAAAGGAGAAATA+TGG 0.261546 7_1:-12828982 None:intergenic
GCATCCCCTGGCTTGATTGC+AGG 0.284009 7_1:-12828664 None:intergenic
AGTGGAGCATAAAATGTTTA+TGG 0.309641 7_1:+12825693 Msa1010140:exon
GAAGAAGAAGAGCCAGAAAA+TGG 0.318947 7_1:+12825833 Msa1010140:CDS
GTTACTAAGGTTGTTGGAAT+TGG 0.326378 7_1:+12825811 Msa1010140:CDS
GTTGGAGTGATCTGGCATTT+AGG 0.333648 7_1:+12826249 Msa1010140:CDS
AAGTTATATGATTAAGTTAT+GGG 0.335937 7_1:+12829147 Msa1010140:three_prime_UTR
GTCTTTCCACGTCCATTTGT+GGG 0.340761 7_1:+12826039 Msa1010140:CDS
AAGAGCCAGAAAATGGAATA+TGG 0.378148 7_1:+12825840 Msa1010140:CDS
AATAAACTGCAGATCCTTGC+TGG 0.394776 7_1:-12826193 None:intergenic
GAAGTTATATGATTAAGTTA+TGG 0.397580 7_1:+12829146 Msa1010140:three_prime_UTR
TGTCTTTCCACGTCCATTTG+TGG 0.401046 7_1:+12826038 Msa1010140:CDS
ATGTTGATTTGATTCTAGTT+TGG 0.403186 7_1:+12829008 Msa1010140:three_prime_UTR
AATTCAGTTACTAAGGTTGT+TGG 0.412689 7_1:+12825805 Msa1010140:CDS
CATCATCTGTTGGAGTGATC+TGG 0.427669 7_1:+12826241 Msa1010140:CDS
TGCTCCAAATTCAGTTACTA+AGG 0.429738 7_1:+12825798 Msa1010140:CDS
TATATATTTATATTCAGAAA+AGG 0.434945 7_1:+12829079 Msa1010140:three_prime_UTR
AAACTGCATCCTTTGCTAAA+GGG 0.439731 7_1:-12827080 None:intergenic
TTGAAGAGTCTATGTGGTAC+TGG 0.444533 7_1:+12825666 Msa1010140:five_prime_UTR
CAAGCCAGGGGATGCAACTT+TGG 0.445702 7_1:+12828672 Msa1010140:CDS
CATCCTTTGCTAAAGGGAAA+AGG 0.457962 7_1:-12827074 None:intergenic
AAAACTGCATCCTTTGCTAA+AGG 0.460379 7_1:-12827081 None:intergenic
TATCGTTTGGAAGTGATCAA+TGG 0.466251 7_1:+12827104 Msa1010140:CDS
ATTACCTTACGACCCACAAA+TGG 0.468812 7_1:-12826051 None:intergenic
CTCTGAAAATTGTGTGTATG+AGG 0.478927 7_1:+12826011 Msa1010140:CDS
CTAGTGTAAAGGAGAAATAT+GGG 0.494177 7_1:-12828981 None:intergenic
GTTGAACCTGCAATCAAGCC+AGG 0.510194 7_1:+12828658 Msa1010140:CDS
AGTAGTGAGAAATTTCTATG+AGG 0.519129 7_1:+12825948 Msa1010140:CDS
ACGTCCATTTGTGGGTCGTA+AGG 0.526163 7_1:+12826047 Msa1010140:CDS
TCAACATACTACTAGTGTAA+AGG 0.527209 7_1:-12828992 None:intergenic
TCTTCAACGATTTCCTCAGT+TGG 0.530591 7_1:+12828911 Msa1010140:CDS
CATACCAAAGTTGCATCCCC+TGG 0.535620 7_1:-12828676 None:intergenic
ACGAAGGATTCATCATCTGT+TGG 0.536876 7_1:+12826231 Msa1010140:CDS
GTAGTGAGAAATTTCTATGA+GGG 0.544610 7_1:+12825949 Msa1010140:CDS
TATTGATGATTTGTCTACGA+AGG 0.552341 7_1:+12826215 Msa1010140:CDS
CACACACTTTGATGATAACA+AGG 0.561817 7_1:+12825906 Msa1010140:CDS
CTATGTGACAACGAAGTCAA+AGG 0.570861 7_1:-12825766 None:intergenic
CTATGTGGTACTGGGTGAAG+TGG 0.575860 7_1:+12825675 Msa1010140:five_prime_UTR
TCTGATAAACAGATATGGAC+GGG 0.577054 7_1:+12828630 Msa1010140:intron
TTAAGTTTGAAGAGTCTATG+TGG 0.602776 7_1:+12825660 Msa1010140:five_prime_UTR
TTGAACCTGCAATCAAGCCA+GGG 0.605419 7_1:+12828659 Msa1010140:CDS
TTCTGATAAACAGATATGGA+CGG 0.605638 7_1:+12828629 Msa1010140:intron
TTAATGAATGCAGAATGGAA+AGG 0.612500 7_1:+12827047 Msa1010140:intron
GTTCACTGATTCTACCAGCA+AGG 0.619438 7_1:+12826179 Msa1010140:CDS
TTACGACCCACAAATGGACG+TGG 0.627873 7_1:-12826045 None:intergenic
CAGTGATAAAGAGTGTGACA+TGG 0.641209 7_1:+12828886 Msa1010140:CDS
CTTGTTATCATCAAAGTGTG+TGG 0.642662 7_1:-12825905 None:intergenic
TATAATCGGTCTGCCAACTG+AGG 0.665914 7_1:-12828924 None:intergenic
TGAAGAGTCTATGTGGTACT+GGG 0.670990 7_1:+12825667 Msa1010140:five_prime_UTR
CAAATGGACGTGGAAAGACA+AGG 0.682609 7_1:-12826035 None:intergenic
TGAACCTGCAATCAAGCCAG+GGG 0.698730 7_1:+12828660 Msa1010140:CDS
AATATGGCAGTTAATAACAG+TGG 0.699800 7_1:+12825856 Msa1010140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTATATTCAGAAA+AGG + chr7_1:12829079-12829098 Msa1010140:three_prime_UTR 10.0%
!! AAAAACTTACTACTAAATAA+GGG - chr7_1:12826556-12826575 None:intergenic 15.0%
!! ATTTATTAGTAACTTTCAAA+AGG + chr7_1:12827003-12827022 Msa1010140:intron 15.0%
!! ATCTATTTAAATCTAAGTAT+GGG + chr7_1:12827334-12827353 Msa1010140:intron 15.0%
!! AAGTTATATGATTAAGTTAT+GGG + chr7_1:12829147-12829166 Msa1010140:three_prime_UTR 15.0%
!! TAGAAGAAGTTTATAAAAAG+TGG + chr7_1:12826105-12826124 Msa1010140:intron 20.0%
!!! AATTACTAGTACTATTTTAC+AGG + chr7_1:12826134-12826153 Msa1010140:intron 20.0%
!! CAAATGTATAGATATAAAGA+AGG - chr7_1:12826292-12826311 None:intergenic 20.0%
!! AAAACTTACTACTAAATAAG+GGG - chr7_1:12826555-12826574 None:intergenic 20.0%
!! CAAAAACTTACTACTAAATA+AGG - chr7_1:12826557-12826576 None:intergenic 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + chr7_1:12826555-12826574 Msa1010140:intron 20.0%
!! TGAAAATGATTGCAAAATAT+TGG + chr7_1:12826921-12826940 Msa1010140:intron 20.0%
!! GATCTATTTAAATCTAAGTA+TGG + chr7_1:12827333-12827352 Msa1010140:intron 20.0%
!! GGAAGACTATAAAAATTATT+TGG + chr7_1:12827589-12827608 Msa1010140:intron 20.0%
!!! GTATTTATTCTATTTCTCAA+TGG + chr7_1:12828032-12828051 Msa1010140:intron 20.0%
!!! ATATTTCTGATAAACAGATA+TGG + chr7_1:12828625-12828644 Msa1010140:intron 20.0%
!! GAAGTTATATGATTAAGTTA+TGG + chr7_1:12829146-12829165 Msa1010140:three_prime_UTR 20.0%
!! TTGCAATCATTTTCAAAATG+TGG - chr7_1:12826916-12826935 None:intergenic 25.0%
!! ATTTGTTAATGAATGCAGAA+TGG + chr7_1:12827042-12827061 Msa1010140:intron 25.0%
! TGATGATTATATTCTTGTAG+AGG + chr7_1:12827280-12827299 Msa1010140:intron 25.0%
! CTTGGAAAACTATACAAAAT+CGG + chr7_1:12827646-12827665 Msa1010140:intron 25.0%
!! AATTTCTAAGCATTTGAGTT+GGG + chr7_1:12828410-12828429 Msa1010140:intron 25.0%
!! AAGAAACTTCAAGTTAAACT+GGG - chr7_1:12828454-12828473 None:intergenic 25.0%
!! AAAGAAACTTCAAGTTAAAC+TGG - chr7_1:12828455-12828474 None:intergenic 25.0%
!!! AGCTCTACATTATTTTGAAA+AGG + chr7_1:12828952-12828971 Msa1010140:three_prime_UTR 25.0%
!!! GCTCTACATTATTTTGAAAA+GGG + chr7_1:12828953-12828972 Msa1010140:three_prime_UTR 25.0%
!!! ATGTTGATTTGATTCTAGTT+TGG + chr7_1:12829008-12829027 Msa1010140:three_prime_UTR 25.0%
TTAAGTTTGAAGAGTCTATG+TGG + chr7_1:12825660-12825679 Msa1010140:five_prime_UTR 30.0%
AGTGGAGCATAAAATGTTTA+TGG + chr7_1:12825693-12825712 Msa1010140:exon 30.0%
ACAACCTTAGTAACTGAATT+TGG - chr7_1:12825805-12825824 None:intergenic 30.0%
AATTCAGTTACTAAGGTTGT+TGG + chr7_1:12825805-12825824 Msa1010140:CDS 30.0%
AATATGGCAGTTAATAACAG+TGG + chr7_1:12825856-12825875 Msa1010140:CDS 30.0%
AGTAGTGAGAAATTTCTATG+AGG + chr7_1:12825948-12825967 Msa1010140:CDS 30.0%
GTAGTGAGAAATTTCTATGA+GGG + chr7_1:12825949-12825968 Msa1010140:CDS 30.0%
! TATTGATGATTTGTCTACGA+AGG + chr7_1:12826215-12826234 Msa1010140:CDS 30.0%
AATATGAATTGAGTGGTACT+CGG + chr7_1:12826523-12826542 Msa1010140:intron 30.0%
AACTGTTATTGAGATACTAG+TGG - chr7_1:12826751-12826770 None:intergenic 30.0%
TTAATGAATGCAGAATGGAA+AGG + chr7_1:12827047-12827066 Msa1010140:intron 30.0%
CAATTATTTCACGCTTAACA+AGG - chr7_1:12827689-12827708 None:intergenic 30.0%
CTTGTTAAGCGTGAAATAAT+TGG + chr7_1:12827687-12827706 Msa1010140:intron 30.0%
ATCAAACCTTCAATAACAAG+TGG - chr7_1:12827764-12827783 None:intergenic 30.0%
TTTGATCCGAAATAGCAAAA+TGG + chr7_1:12827795-12827814 Msa1010140:intron 30.0%
! GTCACTTGTTTAAATTTTCC+AGG + chr7_1:12827855-12827874 Msa1010140:intron 30.0%
! ACTTGTTTAAATTTTCCAGG+TGG + chr7_1:12827858-12827877 Msa1010140:intron 30.0%
AGCTAAAATTTGTAACAGTG+TGG + chr7_1:12827903-12827922 Msa1010140:intron 30.0%
! CAAGTGATTTTTCATGACAA+AGG + chr7_1:12827962-12827981 Msa1010140:intron 30.0%
TTCTGTATGCGTTAATTCAA+TGG + chr7_1:12828221-12828240 Msa1010140:intron 30.0%
! CTGTACTGTTTTATCAGTTA+AGG + chr7_1:12828247-12828266 Msa1010140:intron 30.0%
!! GATTTTGGCAGAATAGTTTA+TGG + chr7_1:12828275-12828294 Msa1010140:intron 30.0%
CAATTTCTAAGCATTTGAGT+TGG + chr7_1:12828409-12828428 Msa1010140:intron 30.0%
AGTTTCTTTACTCAGTTTAG+TGG + chr7_1:12828466-12828485 Msa1010140:intron 30.0%
TAATGTTCTTGTTCACATTC+AGG + chr7_1:12828504-12828523 Msa1010140:intron 30.0%
TTCTGATAAACAGATATGGA+CGG + chr7_1:12828629-12828648 Msa1010140:intron 30.0%
TACTATCGATATTTCTTCCT+TGG + chr7_1:12828791-12828810 Msa1010140:intron 30.0%
TTTGGAAACAATTAACATGC+AGG + chr7_1:12828863-12828882 Msa1010140:intron 30.0%
!! TGTAGAGCTTTTGCTATAAT+CGG - chr7_1:12828941-12828960 None:intergenic 30.0%
CTAGTGTAAAGGAGAAATAT+GGG - chr7_1:12828984-12829003 None:intergenic 30.0%
ACTAGTGTAAAGGAGAAATA+TGG - chr7_1:12828985-12829004 None:intergenic 30.0%
TCAACATACTACTAGTGTAA+AGG - chr7_1:12828995-12829014 None:intergenic 30.0%
TGCTCCAAATTCAGTTACTA+AGG + chr7_1:12825798-12825817 Msa1010140:CDS 35.0%
GTTACTAAGGTTGTTGGAAT+TGG + chr7_1:12825811-12825830 Msa1010140:CDS 35.0%
AAGAGCCAGAAAATGGAATA+TGG + chr7_1:12825840-12825859 Msa1010140:CDS 35.0%
! AACTGCCATATTCCATTTTC+TGG - chr7_1:12825848-12825867 None:intergenic 35.0%
! CTTGTTATCATCAAAGTGTG+TGG - chr7_1:12825908-12825927 None:intergenic 35.0%
! CACACACTTTGATGATAACA+AGG + chr7_1:12825906-12825925 Msa1010140:CDS 35.0%
! CTCTGAAAATTGTGTGTATG+AGG + chr7_1:12826011-12826030 Msa1010140:CDS 35.0%
TCAACTTTGTGTTTCAATGC+AGG - chr7_1:12826382-12826401 None:intergenic 35.0%
AAGTACTTTCTTCACTGCTT+TGG - chr7_1:12826439-12826458 None:intergenic 35.0%
CGATACGAATATGAATTGAG+TGG + chr7_1:12826516-12826535 Msa1010140:intron 35.0%
AGAACAATCAGTCAGAAGAT+TGG - chr7_1:12826601-12826620 None:intergenic 35.0%
TTATAATGGCCCAATCAGAT+GGG - chr7_1:12826810-12826829 None:intergenic 35.0%
ATTATAATGGCCCAATCAGA+TGG - chr7_1:12826811-12826830 None:intergenic 35.0%
ATCTGATTGGGCCATTATAA+TGG + chr7_1:12826810-12826829 Msa1010140:intron 35.0%
TCTGATTGGGCCATTATAAT+GGG + chr7_1:12826811-12826830 Msa1010140:intron 35.0%
! TGGCCTTGATCTAAACATAT+TGG + chr7_1:12826836-12826855 Msa1010140:intron 35.0%
GGCCTTGATCTAAACATATT+GGG + chr7_1:12826837-12826856 Msa1010140:intron 35.0%
AGCCCAATATGTTTAGATCA+AGG - chr7_1:12826842-12826861 None:intergenic 35.0%
AAACTGCATCCTTTGCTAAA+GGG - chr7_1:12827083-12827102 None:intergenic 35.0%
AAAACTGCATCCTTTGCTAA+AGG - chr7_1:12827084-12827103 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG + chr7_1:12827091-12827110 Msa1010140:CDS 35.0%
TATCGTTTGGAAGTGATCAA+TGG + chr7_1:12827104-12827123 Msa1010140:CDS 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + chr7_1:12827301-12827320 Msa1010140:intron 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + chr7_1:12827307-12827326 Msa1010140:intron 35.0%
AAGATAGAGAGGTTAGAGAA+GGG + chr7_1:12827410-12827429 Msa1010140:intron 35.0%
AAGATCAGTGTGTTTAGTCT+TGG + chr7_1:12827463-12827482 Msa1010140:intron 35.0%
!! TGTGTTTAGTCTTGGATGAT+GGG + chr7_1:12827471-12827490 Msa1010140:intron 35.0%
! ATGGGAGATATACGCTATTT+TGG + chr7_1:12827489-12827508 Msa1010140:intron 35.0%
TAGACTGTTTCCATTATCGA+TGG + chr7_1:12827556-12827575 Msa1010140:intron 35.0%
TAAGCGTGAAATAATTGGAG+AGG + chr7_1:12827692-12827711 Msa1010140:intron 35.0%
ATCCGAAATAGCAAAATGGT+TGG + chr7_1:12827799-12827818 Msa1010140:intron 35.0%
TCCGAAATAGCAAAATGGTT+GGG + chr7_1:12827800-12827819 Msa1010140:intron 35.0%
!!! ACCCAACCATTTTGCTATTT+CGG - chr7_1:12827804-12827823 None:intergenic 35.0%
AATAGCAAAATGGTTGGGTT+TGG + chr7_1:12827805-12827824 Msa1010140:intron 35.0%
!! AAATTTTCCAGGTGGATTCA+AGG + chr7_1:12827866-12827885 Msa1010140:intron 35.0%
TCTCAATGGTTCACTTGTTT+AGG + chr7_1:12828046-12828065 Msa1010140:intron 35.0%
! ATGGTTCACTTGTTTAGGTT+TGG + chr7_1:12828051-12828070 Msa1010140:intron 35.0%
!! TGTTTAGGTTTGGTGTGTAA+TGG + chr7_1:12828061-12828080 Msa1010140:intron 35.0%
! TCAGTTAAGGTTGCAGATTT+TGG + chr7_1:12828260-12828279 Msa1010140:intron 35.0%
! GTGTTTCTTTGCTATATAGC+AGG + chr7_1:12828383-12828402 Msa1010140:intron 35.0%
TCTGATAAACAGATATGGAC+GGG + chr7_1:12828630-12828649 Msa1010140:intron 35.0%
ACTCAATAGCATCACTGATA+AGG - chr7_1:12828711-12828730 None:intergenic 35.0%
TCAGAAGACACTAAAATCCA+AGG - chr7_1:12828811-12828830 None:intergenic 35.0%
! AGCTATCAGTCTGATCTTTT+TGG + chr7_1:12828845-12828864 Msa1010140:intron 35.0%
! CACTTTCACATTTTATGCGT+TGG - chr7_1:12829056-12829075 None:intergenic 35.0%
TTGAAGAGTCTATGTGGTAC+TGG + chr7_1:12825666-12825685 Msa1010140:five_prime_UTR 40.0%
TGAAGAGTCTATGTGGTACT+GGG + chr7_1:12825667-12825686 Msa1010140:five_prime_UTR 40.0%
CTATGTGACAACGAAGTCAA+AGG - chr7_1:12825769-12825788 None:intergenic 40.0%
GAAGAAGAAGAGCCAGAAAA+TGG + chr7_1:12825833-12825852 Msa1010140:CDS 40.0%
ATTACCTTACGACCCACAAA+TGG - chr7_1:12826054-12826073 None:intergenic 40.0%
AATAAACTGCAGATCCTTGC+TGG - chr7_1:12826196-12826215 None:intergenic 40.0%
ACGAAGGATTCATCATCTGT+TGG + chr7_1:12826231-12826250 Msa1010140:CDS 40.0%
TACTTTCTTCACTGCTTTGG+AGG - chr7_1:12826436-12826455 None:intergenic 40.0%
! ACTTAGAAAGTGTGAAGAGC+AGG + chr7_1:12826484-12826503 Msa1010140:intron 40.0%
! CTTAGAAAGTGTGAAGAGCA+GGG + chr7_1:12826485-12826504 Msa1010140:intron 40.0%
AGCTGTTGAGGTTGTAATCA+GGG + chr7_1:12826644-12826663 Msa1010140:intron 40.0%
TATAATGGCCCAATCAGATG+GGG - chr7_1:12826809-12826828 None:intergenic 40.0%
!! TTGGGCCATTATAATGGGTA+TGG + chr7_1:12826816-12826835 Msa1010140:intron 40.0%
CAAGGCCATACCCATTATAA+TGG - chr7_1:12826824-12826843 None:intergenic 40.0%
! AAGCCTTTTCCCTTTAGCAA+AGG + chr7_1:12827071-12827090 Msa1010140:CDS 40.0%
CATCCTTTGCTAAAGGGAAA+AGG - chr7_1:12827077-12827096 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG + chr7_1:12827172-12827191 Msa1010140:intron 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG + chr7_1:12827209-12827228 Msa1010140:intron 40.0%
ATCTAAGTATGGGCATGTTG+AGG + chr7_1:12827344-12827363 Msa1010140:intron 40.0%
TCTAAGTATGGGCATGTTGA+GGG + chr7_1:12827345-12827364 Msa1010140:intron 40.0%
ATGTTGAGGGTTAAATCGGA+AGG + chr7_1:12827358-12827377 Msa1010140:intron 40.0%
TGTTGAGGGTTAAATCGGAA+GGG + chr7_1:12827359-12827378 Msa1010140:intron 40.0%
GAAGATAGAGAGGTTAGAGA+AGG + chr7_1:12827409-12827428 Msa1010140:intron 40.0%
!! GTGTGTTTAGTCTTGGATGA+TGG + chr7_1:12827470-12827489 Msa1010140:intron 40.0%
ACTTTGACGTCCATCGATAA+TGG - chr7_1:12827569-12827588 None:intergenic 40.0%
ATTATCGATGGACGTCAAAG+TGG + chr7_1:12827568-12827587 Msa1010140:intron 40.0%
GCATGTGATCAGTCATTTGA+AGG + chr7_1:12827611-12827630 Msa1010140:intron 40.0%
TGTGATCAGTCATTTGAAGG+TGG + chr7_1:12827614-12827633 Msa1010140:intron 40.0%
ACAAAATCGGTTACCAGCAA+AGG + chr7_1:12827659-12827678 Msa1010140:intron 40.0%
TTAACAAGGTTGTCCTTTGC+TGG - chr7_1:12827675-12827694 None:intergenic 40.0%
ACACTCATTTGTGTAGTGCA+GGG + chr7_1:12827715-12827734 Msa1010140:intron 40.0%
!! TGTGAGCCACTTGTTATTGA+AGG + chr7_1:12827755-12827774 Msa1010140:intron 40.0%
CAAAATGGTTGGGTTTGGAA+GGG + chr7_1:12827810-12827829 Msa1010140:intron 40.0%
AAAATGGTTGGGTTTGGAAG+GGG + chr7_1:12827811-12827830 Msa1010140:intron 40.0%
! TTGATTCCTAGCTCTCCAAA+CGG - chr7_1:12827945-12827964 None:intergenic 40.0%
TTTCAATGCTGCCATGGAAT+TGG + chr7_1:12827987-12828006 Msa1010140:intron 40.0%
!! TTAGCTTGCAACCAATTCCA+TGG - chr7_1:12828001-12828020 None:intergenic 40.0%
CATATATACCTAGAGACGCA+GGG - chr7_1:12828117-12828136 None:intergenic 40.0%
ACAGAGGGAAAATTGCTTGA+AGG - chr7_1:12828318-12828337 None:intergenic 40.0%
AGGACACTCAAAACAACAGA+GGG - chr7_1:12828333-12828352 None:intergenic 40.0%
!! TGTTTTGAGTGTCCTGGTAT+TGG + chr7_1:12828338-12828357 Msa1010140:intron 40.0%
AAGAAACACATTCAAGCACG+AGG - chr7_1:12828534-12828553 None:intergenic 40.0%
! CAGTGATAAAGAGTGTGACA+TGG + chr7_1:12828886-12828905 Msa1010140:CDS 40.0%
TCTTCAACGATTTCCTCAGT+TGG + chr7_1:12828911-12828930 Msa1010140:CDS 40.0%
CAAATGGACGTGGAAAGACA+AGG - chr7_1:12826038-12826057 None:intergenic 45.0%
TGTCTTTCCACGTCCATTTG+TGG + chr7_1:12826038-12826057 Msa1010140:CDS 45.0%
GTCTTTCCACGTCCATTTGT+GGG + chr7_1:12826039-12826058 Msa1010140:CDS 45.0%
!! GTTCACTGATTCTACCAGCA+AGG + chr7_1:12826179-12826198 Msa1010140:CDS 45.0%
CATCATCTGTTGGAGTGATC+TGG + chr7_1:12826241-12826260 Msa1010140:CDS 45.0%
GTTGGAGTGATCTGGCATTT+AGG + chr7_1:12826249-12826268 Msa1010140:CDS 45.0%
! ACAAAGTTGATCTCCTGAGC+TGG + chr7_1:12826392-12826411 Msa1010140:intron 45.0%
GAGCTGTTGAGGTTGTAATC+AGG + chr7_1:12826643-12826662 Msa1010140:intron 45.0%
TGTTGAGGTTGTAATCAGGG+CGG + chr7_1:12826647-12826666 Msa1010140:intron 45.0%
GCTTGGCTATTGCTCTTATC+TGG + chr7_1:12826713-12826732 Msa1010140:intron 45.0%
ACAATATGACGCGTTCTCGT+TGG - chr7_1:12826874-12826893 None:intergenic 45.0%
GGGCATGTTGAGGGTTAAAT+CGG + chr7_1:12827354-12827373 Msa1010140:intron 45.0%
AGGGTTAAATCGGAAGGGTT+GGG + chr7_1:12827364-12827383 Msa1010140:intron 45.0%
CTCTCTATCTTCTTCCACCA+CGG - chr7_1:12827401-12827420 None:intergenic 45.0%
!! AGGTTAGAGAAGGGTGTTGA+GGG + chr7_1:12827419-12827438 Msa1010140:intron 45.0%
ACGATACACCCAGTCATCTA+CGG - chr7_1:12827521-12827540 None:intergenic 45.0%
!!! TGAAGGTGGTTTTGTTCGCT+TGG + chr7_1:12827628-12827647 Msa1010140:intron 45.0%
GACACTCATTTGTGTAGTGC+AGG + chr7_1:12827714-12827733 Msa1010140:intron 45.0%
GCAAAATGGTTGGGTTTGGA+AGG + chr7_1:12827809-12827828 Msa1010140:intron 45.0%
!! TTTTCCAGGTGGATTCAAGG+AGG + chr7_1:12827869-12827888 Msa1010140:intron 45.0%
TAGCGTGTATTCAGTCCGTT+TGG + chr7_1:12827927-12827946 Msa1010140:intron 45.0%
! AAGGTGTTTCAATGCTGCCA+TGG + chr7_1:12827981-12828000 Msa1010140:intron 45.0%
AGACGCAGGGAAAAAAACAG+TGG - chr7_1:12828104-12828123 None:intergenic 45.0%
!!! GTTTTTTTCCCTGCGTCTCT+AGG + chr7_1:12828106-12828125 Msa1010140:intron 45.0%
CCATATATACCTAGAGACGC+AGG - chr7_1:12828118-12828137 None:intergenic 45.0%
CCTGCGTCTCTAGGTATATA+TGG + chr7_1:12828115-12828134 Msa1010140:intron 45.0%
GCGTCTCTAGGTATATATGG+TGG + chr7_1:12828118-12828137 Msa1010140:intron 45.0%
! GTTTAAGACGCTTCTGTGCA+AGG + chr7_1:12828190-12828209 Msa1010140:intron 45.0%
CAGGACACTCAAAACAACAG+AGG - chr7_1:12828334-12828353 None:intergenic 45.0%
!!! CTCTGTTGTTTTGAGTGTCC+TGG + chr7_1:12828332-12828351 Msa1010140:intron 45.0%
!! GTCCTGGTATTGGTGCTTTA+TGG + chr7_1:12828348-12828367 Msa1010140:intron 45.0%
! CTCCATAAAGCACCAATACC+AGG - chr7_1:12828353-12828372 None:intergenic 45.0%
TTGAACCTGCAATCAAGCCA+GGG + chr7_1:12828659-12828678 Msa1010140:CDS 45.0%
TATAATCGGTCTGCCAACTG+AGG - chr7_1:12828927-12828946 None:intergenic 45.0%
! CTATGTGGTACTGGGTGAAG+TGG + chr7_1:12825675-12825694 Msa1010140:five_prime_UTR 50.0%
TTACGACCCACAAATGGACG+TGG - chr7_1:12826048-12826067 None:intergenic 50.0%
ACGTCCATTTGTGGGTCGTA+AGG + chr7_1:12826047-12826066 Msa1010140:CDS 50.0%
GAGGGTTATATCACCAGCTC+AGG - chr7_1:12826408-12826427 None:intergenic 50.0%
TGGAGCGTATCACAACTCAG+AGG - chr7_1:12826581-12826600 None:intergenic 50.0%
TCCTGCTCTTTGAGCTGTTG+AGG + chr7_1:12826632-12826651 Msa1010140:intron 50.0%
ACCTCAACAGCTCAAAGAGC+AGG - chr7_1:12826636-12826655 None:intergenic 50.0%
TGTTCCCCGATATCTGCCAT+CGG + chr7_1:12826682-12826701 Msa1010140:intron 50.0%
ACAACCCCGATGGCAGATAT+CGG - chr7_1:12826691-12826710 None:intergenic 50.0%
AAGCTCGACCCCATCTGATT+GGG + chr7_1:12826798-12826817 Msa1010140:intron 50.0%
GAGGGTTAAATCGGAAGGGT+TGG + chr7_1:12827363-12827382 Msa1010140:intron 50.0%
GTTGGGTGTTTGATTCACCG+TGG + chr7_1:12827381-12827400 Msa1010140:intron 50.0%
! CGTGGTGGAAGAAGATAGAG+AGG + chr7_1:12827399-12827418 Msa1010140:intron 50.0%
!! GAGGTTAGAGAAGGGTGTTG+AGG + chr7_1:12827418-12827437 Msa1010140:intron 50.0%
!! GGTTAGAGAAGGGTGTTGAG+GGG + chr7_1:12827420-12827439 Msa1010140:intron 50.0%
!! GTTAGAGAAGGGTGTTGAGG+GGG + chr7_1:12827421-12827440 Msa1010140:intron 50.0%
TGGTCGAAACCGTAGATGAC+TGG + chr7_1:12827509-12827528 Msa1010140:intron 50.0%
GGTCGAAACCGTAGATGACT+GGG + chr7_1:12827510-12827529 Msa1010140:intron 50.0%
TCTTCCTCCTTGAATCCACC+TGG - chr7_1:12827876-12827895 None:intergenic 50.0%
TTCAGTCCGTTTGGAGAGCT+AGG + chr7_1:12827936-12827955 Msa1010140:intron 50.0%
TGTGTAATGGCCGAGTGTTC+TGG + chr7_1:12828074-12828093 Msa1010140:intron 50.0%
CAGTGGTGTTCCAGAACACT+CGG - chr7_1:12828087-12828106 None:intergenic 50.0%
GTTGAACCTGCAATCAAGCC+AGG + chr7_1:12828658-12828677 Msa1010140:CDS 50.0%
TGAACCTGCAATCAAGCCAG+GGG + chr7_1:12828660-12828679 Msa1010140:CDS 50.0%
CATACCAAAGTTGCATCCCC+TGG - chr7_1:12828679-12828698 None:intergenic 50.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - chr7_1:12826426-12826445 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - chr7_1:12826430-12826449 None:intergenic 55.0%
GTTCCCCGATATCTGCCATC+GGG + chr7_1:12826683-12826702 Msa1010140:intron 55.0%
TTCCCCGATATCTGCCATCG+GGG + chr7_1:12826684-12826703 Msa1010140:intron 55.0%
AACCCCGATGGCAGATATCG+GGG - chr7_1:12826689-12826708 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+GGG - chr7_1:12826690-12826709 None:intergenic 55.0%
CAATCAGATGGGGTCGAGCT+TGG - chr7_1:12826799-12826818 None:intergenic 55.0%
CAAGCTCGACCCCATCTGAT+TGG + chr7_1:12826797-12826816 Msa1010140:intron 55.0%
GGGTGTTTGATTCACCGTGG+TGG + chr7_1:12827384-12827403 Msa1010140:intron 55.0%
TTGAGGGGGCAAGTCAGGTT+TGG + chr7_1:12827435-12827454 Msa1010140:intron 55.0%
CAAGCCAGGGGATGCAACTT+TGG + chr7_1:12828672-12828691 Msa1010140:CDS 55.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - chr7_1:12826427-12826446 None:intergenic 60.0%
! GCATCCCCTGGCTTGATTGC+AGG - chr7_1:12828667-12828686 None:intergenic 60.0%
TGCCATCGGGGTTGTGCGCT+TGG + chr7_1:12826696-12826715 Msa1010140:intron 65.0%
AGCCAAGCGCACAACCCCGA+TGG - chr7_1:12826701-12826720 None:intergenic 65.0%
GATGGGGTCGAGCTTGGCGT+GGG - chr7_1:12826793-12826812 None:intergenic 65.0%
AGATGGGGTCGAGCTTGGCG+TGG - chr7_1:12826794-12826813 None:intergenic 65.0%
!! GGGTGTTGAGGGGGCAAGTC+AGG + chr7_1:12827430-12827449 Msa1010140:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 12825613 12829188 12825613 ID=Msa1010140;Name=Msa1010140
chr7_1 mRNA 12825613 12829188 12825613 ID=Msa1010140-mRNA-1;Parent=Msa1010140;Name=Msa1010140-mRNA-1;_AED=0.32;_eAED=0.32;_QI=93|1|1|1|1|1|5|241|224
chr7_1 exon 12825613 12826068 12825613 ID=Msa1010140-mRNA-1:exon:3276;Parent=Msa1010140-mRNA-1
chr7_1 exon 12826156 12826270 12826156 ID=Msa1010140-mRNA-1:exon:3277;Parent=Msa1010140-mRNA-1
chr7_1 exon 12827060 12827141 12827060 ID=Msa1010140-mRNA-1:exon:3278;Parent=Msa1010140-mRNA-1
chr7_1 exon 12828642 12828693 12828642 ID=Msa1010140-mRNA-1:exon:3279;Parent=Msa1010140-mRNA-1
chr7_1 exon 12828885 12829188 12828885 ID=Msa1010140-mRNA-1:exon:3280;Parent=Msa1010140-mRNA-1
chr7_1 five_prime_UTR 12825613 12825705 12825613 ID=Msa1010140-mRNA-1:five_prime_utr;Parent=Msa1010140-mRNA-1
chr7_1 CDS 12825706 12826068 12825706 ID=Msa1010140-mRNA-1:cds;Parent=Msa1010140-mRNA-1
chr7_1 CDS 12826156 12826270 12826156 ID=Msa1010140-mRNA-1:cds;Parent=Msa1010140-mRNA-1
chr7_1 CDS 12827060 12827141 12827060 ID=Msa1010140-mRNA-1:cds;Parent=Msa1010140-mRNA-1
chr7_1 CDS 12828642 12828693 12828642 ID=Msa1010140-mRNA-1:cds;Parent=Msa1010140-mRNA-1
chr7_1 CDS 12828885 12828947 12828885 ID=Msa1010140-mRNA-1:cds;Parent=Msa1010140-mRNA-1
chr7_1 three_prime_UTR 12828948 12829188 12828948 ID=Msa1010140-mRNA-1:three_prime_utr;Parent=Msa1010140-mRNA-1
Gene Sequence

>Msa1010140

ATGTTTATGGTGTGTAGTTCTAGTAGCAGCACACAAGTGCTAATATTGAACTCAGCGTCACCTTTGACTTCGTTGTCACATAGAAGAATCTATGCTCCAAATTCAGTTACTAAGGTTGTTGGAATTGGAAGAAGAAGAGCCAGAAAATGGAATATGGCAGTTAATAACAGTGGTGAAAATAATTTAGTTACAACAACTACCACACACTTTGATGATAACAAGGTTGTAGATTCAGCTTCAACAGTAGTGAGAAATTTCTATGAGGGAATCAATGCACATGATGTTGATTCTGTACAATATCTTATCTCTGAAAATTGTGTGTATGAGGACCTTGTCTTTCCACGTCCATTTGTGGGTCGTAAGGAAATCATAGAGTTCTTCAAAAAGTTCACTGATTCTACCAGCAAGGATCTGCAGTTTATTATTGATGATTTGTCTACGAAGGATTCATCATCTGTTGGAGTGATCTGGCATTTAGAATGGAAAGGAAAGCCTTTTCCCTTTAGCAAAGGATGCAGTTTTTATCGTTTGGAAGTGATCAATGGCAAGAGACAGATCACATATGGACGGGACTGTGTTGAACCTGCAATCAAGCCAGGGGATGCAACTTTGGCAGTGATAAAGAGTGTGACATGGCTTCTTCAACGATTTCCTCAGTTGGCAGACCGATTATAG

Protein sequence

>Msa1010140

MFMVCSSSSSTQVLILNSASPLTSLSHRRIYAPNSVTKVVGIGRRRARKWNMAVNNSGENNLVTTTTTHFDDNKVVDSASTVVRNFYEGINAHDVDSVQYLISENCVYEDLVFPRPFVGRKEIIEFFKKFTDSTSKDLQFIIDDLSTKDSSSVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITYGRDCVEPAIKPGDATLAVIKSVTWLLQRFPQLADRL*