AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123680 MtrunA17_Chr1g0184461 82.937 504 81 1 1 499 1 504 0.0 844
Msa0123680 MtrunA17_Chr1g0184421 83.164 493 78 2 12 499 12 504 0.0 823
Msa0123680 MtrunA17_Chr1g0184471 87.835 411 30 1 1 411 1 391 0.0 695
Msa0123680 MtrunA17_Chr7g0260831 64.286 476 169 1 25 500 29 503 0.0 638
Msa0123680 MtrunA17_Chr7g0260821 62.179 468 176 1 33 500 38 504 0.0 612
Msa0123680 MtrunA17_Chr7g0255131 46.123 503 243 10 16 499 15 508 6.20e-147 432
Msa0123680 MtrunA17_Chr7g0225531 43.110 508 270 8 2 500 15 512 2.90e-141 418
Msa0123680 MtrunA17_Chr3g0119681 44.219 493 244 7 30 500 35 518 1.37e-138 412
Msa0123680 MtrunA17_Chr4g0026941 43.966 464 234 9 51 499 87 539 2.11e-124 376
Msa0123680 MtrunA17_Chr2g0321171 42.826 453 240 8 48 496 58 495 1.27e-119 362
Msa0123680 MtrunA17_Chr1g0178971 41.379 464 246 8 48 499 63 512 1.11e-117 358
Msa0123680 MtrunA17_Chr4g0038271 40.392 510 263 16 27 509 75 570 4.02e-112 345
Msa0123680 MtrunA17_Chr8g0348751 37.477 547 308 13 4 527 2 537 1.32e-110 340
Msa0123680 MtrunA17_Chr1g0164321 38.431 497 267 12 37 504 66 552 6.26e-110 339
Msa0123680 MtrunA17_Chr3g0104351 38.153 498 269 11 33 503 35 520 1.47e-106 330
Msa0123680 MtrunA17_Chr5g0429651 37.702 496 268 11 33 501 29 510 4.00e-104 323
Msa0123680 MtrunA17_Chr8g0387001 36.553 528 298 12 5 511 6 517 9.52e-104 322
Msa0123680 MtrunA17_Chr8g0351391 37.945 477 268 11 38 499 48 511 1.53e-99 311
Msa0123680 MtrunA17_Chr4g0067191 35.581 534 281 16 8 499 3 515 2.07e-95 300
Msa0123680 MtrunA17_Chr8g0351311 36.076 474 274 10 38 495 48 508 1.91e-94 298
Msa0123680 MtrunA17_Chr1g0204271 36.322 435 249 9 38 456 42 464 2.19e-92 292
Msa0123680 MtrunA17_Chr6g0449361 33.742 489 298 11 26 499 26 503 2.90e-92 292
Msa0123680 MtrunA17_Chr7g0227291 34.677 496 300 11 16 499 11 494 1.78e-90 287
Msa0123680 MtrunA17_Chr1g0171041 34.757 515 295 15 11 499 7 506 2.62e-90 287
Msa0123680 MtrunA17_Chr7g0214931 41.039 385 207 7 37 403 57 439 1.73e-89 283
Msa0123680 MtrunA17_Chr6g0449341 33.398 518 307 11 10 499 56 563 7.75e-89 285
Msa0123680 MtrunA17_Chr7g0227281 34.132 501 303 12 11 499 9 494 1.10e-88 282
Msa0123680 MtrunA17_Chr6g0449381 35.253 434 255 9 82 499 82 505 2.34e-88 281
Msa0123680 MtrunA17_Chr4g0004481 34.461 473 286 12 38 498 31 491 5.18e-86 275
Msa0123680 MtrunA17_Chr8g0380501 35.581 430 255 9 81 499 73 491 8.86e-86 275
Msa0123680 MtrunA17_Chr1g0163391 34.556 518 302 16 7 501 1 504 5.80e-85 273
Msa0123680 MtrunA17_Chr6g0449331 32.558 516 314 10 10 499 8 515 5.95e-84 271
Msa0123680 MtrunA17_Chr8g0351461 36.564 454 254 12 35 467 38 478 1.84e-83 269
Msa0123680 MtrunA17_Chr1g0163491 33.399 509 305 13 15 501 27 523 2.26e-83 269
Msa0123680 MtrunA17_Chr6g0449351 32.715 431 268 8 81 498 41 462 3.75e-83 267
Msa0123680 MtrunA17_Chr8g0351401 35.135 481 277 12 35 494 39 505 3.78e-82 266
Msa0123680 MtrunA17_Chr1g0163281 33.725 510 303 15 12 501 27 521 1.51e-81 265
Msa0123680 MtrunA17_Chr8g0351421 33.745 486 284 12 5 467 9 479 3.05e-81 263
Msa0123680 MtrunA17_Chr1g0163501 33.266 493 299 13 27 501 21 501 3.43e-81 263
Msa0123680 MtrunA17_Chr1g0163351 32.871 505 304 15 19 501 16 507 2.90e-80 261
Msa0123680 MtrunA17_Chr8g0351441 34.590 451 259 12 39 467 42 478 8.84e-79 257
Msa0123680 MtrunA17_Chr1g0164351 40.379 369 194 9 27 372 57 422 2.16e-78 253
Msa0123680 MtrunA17_Chr1g0163421 32.630 521 290 17 15 499 45 540 5.78e-78 256
Msa0123680 MtrunA17_Chr1g0163211 31.323 514 318 14 7 501 6 503 8.83e-78 254
Msa0123680 MtrunA17_Chr1g0163401 33.141 519 302 15 11 499 9 512 1.98e-77 253
Msa0123680 MtrunA17_Chr1g0163511 31.450 531 317 18 3 501 5 520 3.23e-77 253
Msa0123680 MtrunA17_Chr1g0163461 30.651 522 304 15 12 499 22 519 6.87e-76 249
Msa0123680 MtrunA17_Chr1g0163451 29.490 529 298 14 14 499 28 524 2.24e-73 243
Msa0123680 MtrunA17_Chr1g0183611 34.625 413 238 9 89 478 3 406 2.76e-73 239
Msa0123680 MtrunA17_Chr1g0163431 37.892 351 200 9 83 418 42 389 1.33e-67 225
Msa0123680 MtrunA17_Chr1g0163371 38.182 220 123 4 289 501 11 224 2.21e-46 162
Msa0123680 MtrunA17_Chr5g0403451 37.452 259 116 9 277 499 31 279 1.47e-45 162
Msa0123680 MtrunA17_Chr1g0204241 34.767 279 150 8 183 456 4 255 9.55e-43 155
Msa0123680 MtrunA17_Chr5g0403441 32.119 302 181 8 8 308 18 296 6.28e-41 150
Msa0123680 MtrunA17_Chr1g0184481 87.671 73 8 1 430 501 1 73 5.36e-39 137
Msa0123680 MtrunA17_Chr2g0309301 43.713 167 82 2 171 333 1 159 1.84e-38 139
Msa0123680 MtrunA17_Chr2g0308941 34.807 181 106 2 80 249 14 193 9.83e-31 119
Msa0123680 MtrunA17_Chr0c19g0493771 25.778 450 299 17 76 508 226 657 7.54e-30 124
Msa0123680 MtrunA17_Chr1g0163361 31.154 260 170 8 14 268 27 282 1.36e-29 118
Msa0123680 MtrunA17_Chr1g0179811 25.799 438 288 17 81 500 122 540 8.33e-27 114
Msa0123680 MtrunA17_Chr7g0215181 24.793 363 244 8 112 466 137 478 4.28e-25 108
Msa0123680 MtrunA17_Chr1g0174471 22.930 471 317 15 6 452 25 473 4.99e-24 105
Msa0123680 MtrunA17_Chr2g0313771 25.122 410 258 16 78 466 111 492 6.52e-24 105
Msa0123680 MtrunA17_Chr7g0248991 26.050 357 231 14 80 416 8 351 1.80e-23 102
Msa0123680 MtrunA17_Chr2g0313811 24.396 414 253 16 110 484 131 523 2.81e-23 103
Msa0123680 MtrunA17_Chr2g0313821 24.036 441 264 15 81 484 105 511 2.91e-22 100
Msa0123680 MtrunA17_Chr6g0457421 27.493 371 224 13 112 466 135 476 3.47e-22 100
Msa0123680 MtrunA17_Chr2g0313781 23.641 423 269 16 100 484 117 523 3.66e-22 100
Msa0123680 MtrunA17_Chr8g0354531 24.339 378 244 12 108 466 260 614 5.67e-22 100
Msa0123680 MtrunA17_Chr2g0307291 24.183 459 294 16 53 484 82 513 5.72e-22 99.8
Msa0123680 MtrunA17_Chr2g0313831 24.835 455 267 20 68 484 94 511 8.80e-22 99.0
Msa0123680 MtrunA17_Chr5g0396521 23.941 472 296 18 81 503 117 574 9.01e-22 99.4
Msa0123680 MtrunA17_Chr1g0174451 25.536 466 296 19 14 452 17 458 1.38e-21 98.2
Msa0123680 MtrunA17_Chr1g0203151 24.103 390 240 14 100 466 124 480 1.40e-21 98.2
Msa0123680 MtrunA17_Chr2g0307301 24.459 462 289 17 53 484 82 513 1.51e-21 98.2
Msa0123680 MtrunA17_Chr6g0479681 23.821 403 241 14 100 466 126 498 2.39e-21 97.8
Msa0123680 MtrunA17_Chr3g0128461 24.439 401 253 12 110 484 143 519 3.02e-21 97.4
Msa0123680 MtrunA17_Chr2g0309311 38.255 149 65 3 290 438 30 151 3.44e-21 91.7
Msa0123680 MtrunA17_Chr1g0203141 22.539 386 251 12 100 466 128 484 3.54e-21 97.1
Msa0123680 MtrunA17_Chr5g0443401 28.205 234 145 6 244 466 226 447 6.35e-21 95.9
Msa0123680 MtrunA17_Chr8g0354511 24.819 415 250 16 80 466 113 493 1.58e-20 95.1
Msa0123680 MtrunA17_Chr2g0313791 25.122 410 238 16 110 484 131 506 1.59e-20 95.1
Msa0123680 MtrunA17_Chr2g0313761 24.939 409 257 13 104 484 120 506 1.85e-20 94.7
Msa0123680 MtrunA17_Chr8g0388921 23.293 498 301 19 1 467 1 448 5.38e-20 93.2
Msa0123680 MtrunA17_Chr4g0004601 22.906 406 268 12 81 468 124 502 1.14e-19 92.4
Msa0123680 MtrunA17_Chr1g0174481 23.656 465 300 18 15 452 16 452 1.33e-19 92.0
Msa0123680 MtrunA17_Chr4g0006871 64.286 70 25 0 495 564 528 597 1.53e-19 93.2
Msa0123680 MtrunA17_Chr8g0362731 25.000 388 269 11 87 467 6 378 2.84e-19 90.5
Msa0123680 MtrunA17_Chr8g0357121 43.878 98 50 1 367 464 25 117 2.98e-19 84.3
Msa0123680 MtrunA17_Chr2g0308951 37.113 97 60 1 153 249 4 99 3.07e-19 83.6
Msa0123680 MtrunA17_Chr2g0310381 22.458 472 327 16 6 461 3 451 5.66e-19 90.1
Msa0123680 MtrunA17_Chr4g0030711 29.050 179 121 4 291 466 304 479 6.21e-19 90.1
Msa0123680 MtrunA17_Chr8g0354571 23.227 409 262 15 81 466 114 493 8.67e-19 89.7
Msa0123680 MtrunA17_Chr4g0058231 24.494 494 318 23 8 473 7 473 9.67e-19 89.4
Msa0123680 MtrunA17_Chr8g0390881 24.236 491 316 20 3 466 7 468 1.06e-18 89.4
Msa0123680 MtrunA17_Chr4g0014051 25.183 409 243 14 110 484 144 523 1.23e-18 89.4
Msa0123680 MtrunA17_Chr4g0030701 28.492 179 122 4 291 466 301 476 1.46e-18 89.0
Msa0123680 MtrunA17_Chr1g0207841 28.507 221 135 8 276 481 287 499 2.03e-18 88.6
Msa0123680 MtrunA17_Chr7g0224561 23.022 556 363 23 1 527 1 520 3.19e-18 87.8
Msa0123680 MtrunA17_Chr5g0446131 23.227 409 264 14 104 484 123 509 3.22e-18 87.8
Msa0123680 MtrunA17_Chr8g0372711 24.609 447 280 19 23 455 40 443 4.04e-18 87.4
Msa0123680 MtrunA17_Chr6g0484811 21.325 483 339 15 3 466 9 469 4.12e-18 87.4
Msa0123680 MtrunA17_Chr8g0387101 25.234 321 195 9 194 500 218 507 4.29e-18 87.4
Msa0123680 MtrunA17_Chr1g0164341 39.806 103 56 3 397 499 1 97 4.88e-18 80.1
Msa0123680 MtrunA17_Chr7g0224551 23.780 492 323 20 1 466 1 466 9.41e-18 86.7
Msa0123680 MtrunA17_Chr4g0046321 24.903 257 171 7 229 466 217 470 9.73e-18 86.3
Msa0123680 MtrunA17_Chr4g0046331 24.806 258 172 6 229 466 217 472 1.11e-17 86.3
Msa0123680 MtrunA17_Chr4g0046351 24.609 256 173 6 229 466 217 470 1.21e-17 86.3
Msa0123680 MtrunA17_Chr7g0235261 23.559 399 274 13 81 468 103 481 2.09e-17 85.5
Msa0123680 MtrunA17_Chr8g0357111 33.333 159 101 4 35 193 38 191 2.38e-17 80.9
Msa0123680 MtrunA17_Chr1g0164211 23.756 442 281 13 35 452 35 444 2.64e-17 85.1
Msa0123680 MtrunA17_Chr8g0374951 55.714 70 31 0 495 564 136 205 2.98e-17 83.2
Msa0123680 MtrunA17_Chr2g0310391 22.458 472 327 16 6 461 3 451 4.92e-17 84.0
Msa0123680 MtrunA17_Chr5g0395321 22.607 491 331 16 6 479 14 472 4.96e-17 84.3
Msa0123680 MtrunA17_Chr6g0472221 22.021 386 257 14 100 467 137 496 6.06e-17 84.0
Msa0123680 MtrunA17_Chr6g0451681 28.061 196 129 4 290 477 262 453 7.12e-17 83.6
Msa0123680 MtrunA17_Chr8g0380471 21.589 491 317 17 1 467 1 447 7.52e-17 83.6
Msa0123680 MtrunA17_Chr5g0419451 22.323 439 289 16 81 496 105 514 1.05e-16 83.2
Msa0123680 MtrunA17_Chr8g0377341 23.061 477 338 14 5 471 41 498 1.20e-16 83.2
Msa0123680 MtrunA17_Chr2g0313751 23.902 410 260 14 104 484 152 538 1.29e-16 83.2
Msa0123680 MtrunA17_Chr2g0280121 24.351 308 199 5 201 500 229 510 2.29e-16 82.0
Msa0123680 MtrunA17_Chr6g0466941 20.943 530 369 16 4 500 5 517 2.30e-16 82.0
Msa0123680 MtrunA17_Chr8g0339331 23.602 483 313 20 26 477 34 491 2.41e-16 82.0
Msa0123680 MtrunA17_Chr5g0395381 22.718 471 295 16 6 461 14 430 5.91e-16 80.5
Msa0123680 MtrunA17_Chr8g0364651 27.064 218 150 5 289 500 285 499 6.11e-16 80.9
Msa0123680 MtrunA17_Chr6g0458561 29.744 195 130 4 286 477 314 504 6.37e-16 80.9
Msa0123680 MtrunA17_Chr8g0344181 23.799 458 294 20 35 466 42 470 1.01e-15 80.1
Msa0123680 MtrunA17_Chr7g0255531 22.736 497 306 19 19 478 15 470 2.25e-15 79.0
Msa0123680 MtrunA17_Chr1g0156101 21.684 475 316 17 25 466 24 475 2.57e-15 79.0
Msa0123680 MtrunA17_Chr8g0357281 51.429 70 34 0 495 564 146 215 2.71e-15 79.3
Msa0123680 MtrunA17_Chr2g0280081 23.377 308 202 6 201 500 724 1005 3.15e-15 79.3
Msa0123680 MtrunA17_Chr2g0280081 29.189 185 119 3 290 466 290 470 1.78e-14 77.0
Msa0123680 MtrunA17_Chr7g0246221 20.635 504 349 14 1 479 1 478 3.64e-15 78.2
Msa0123680 MtrunA17_Chr3g0116681 23.362 458 307 13 6 445 15 446 4.53e-15 78.2
Msa0123680 MtrunA17_Chr8g0382901 23.044 473 307 17 5 461 2 433 4.88e-15 78.6
Msa0123680 MtrunA17_Chr8g0382901 21.304 460 326 17 15 461 476 912 2.08e-13 73.6
Msa0123680 MtrunA17_Chr5g0430081 22.587 487 324 18 6 466 7 466 5.56e-15 77.8
Msa0123680 MtrunA17_Chr4g0011961 21.634 453 309 16 38 466 29 459 6.89e-15 77.4
Msa0123680 MtrunA17_Chr8g0344151 22.894 463 292 17 35 466 40 468 9.83e-15 77.0
Msa0123680 MtrunA17_Chr4g0046681 28.641 206 138 4 299 500 30 230 1.07e-14 73.9
Msa0123680 MtrunA17_Chr6g0484841 22.105 475 305 18 18 461 22 462 1.14e-14 76.6
Msa0123680 MtrunA17_Chr8g0351801 28.649 185 118 5 290 466 304 482 1.15e-14 76.6
Msa0123680 MtrunA17_Chr5g0430131 24.762 210 139 6 270 466 264 467 1.42e-14 76.6
Msa0123680 MtrunA17_Chr7g0218601 22.567 483 331 20 17 479 15 474 1.82e-14 76.3
Msa0123680 MtrunA17_Chr4g0008101 21.731 543 366 19 3 509 13 532 1.90e-14 76.3
Msa0123680 MtrunA17_Chr4g0011901 22.993 461 323 18 20 466 18 460 2.79e-14 75.5
Msa0123680 MtrunA17_Chr8g0344191 25.306 490 302 23 5 466 49 502 2.91e-14 75.5
Msa0123680 MtrunA17_Chr1g0193811 21.088 441 292 12 81 497 106 514 3.00e-14 75.5
Msa0123680 MtrunA17_Chr2g0332521 52.857 70 33 0 495 564 97 166 3.42e-14 75.9
Msa0123680 MtrunA17_Chr5g0431641 23.830 470 302 20 11 452 7 448 3.92e-14 75.1
Msa0123680 MtrunA17_Chr5g0401681 21.444 471 308 16 6 451 9 442 4.09e-14 75.1
Msa0123680 MtrunA17_Chr5g0430071 25.000 204 134 6 276 466 124 321 4.94e-14 73.9
Msa0123680 MtrunA17_Chr7g0254641 21.581 468 307 17 25 458 33 474 5.70e-14 74.7
Msa0123680 MtrunA17_Chr5g0403351 22.004 459 283 16 25 447 29 448 6.52e-14 74.3
Msa0123680 MtrunA17_Chr1g0162811 21.355 487 307 19 6 456 8 454 6.64e-14 74.3
Msa0123680 MtrunA17_Chr1g0154731 22.749 422 259 18 81 475 102 483 1.32e-13 73.6
Msa0123680 MtrunA17_Chr8g0339311 24.309 362 242 11 123 461 135 487 1.39e-13 73.6
Msa0123680 MtrunA17_Chr5g0409051 24.599 187 136 3 284 467 292 476 1.59e-13 73.2
Msa0123680 MtrunA17_Chr6g0451641 25.094 267 172 11 226 477 240 493 2.09e-13 72.8
Msa0123680 MtrunA17_Chr5g0402981 25.773 194 136 4 311 500 3 192 2.15e-13 69.3
Msa0123680 MtrunA17_Chr8g0362481 22.250 400 261 15 81 452 11 388 2.20e-13 72.4
Msa0123680 MtrunA17_Chr4g0047661 21.834 458 307 17 17 447 29 462 2.47e-13 72.8
Msa0123680 MtrunA17_Chr5g0430101 25.714 175 120 4 289 459 290 458 3.14e-13 72.4
Msa0123680 MtrunA17_Chr8g0364081 21.266 395 259 10 104 466 136 510 4.60e-13 72.0
Msa0123680 MtrunA17_Chr6g0451781 23.507 268 184 8 223 477 274 533 5.14e-13 71.6
Msa0123680 MtrunA17_Chr5g0430091 22.857 490 321 20 5 466 8 468 6.39e-13 71.2
Msa0123680 MtrunA17_Chr8g0390871 23.757 181 129 4 289 466 16 190 9.44e-13 68.2
Msa0123680 MtrunA17_Chr3g0094231 20.676 503 332 20 22 494 27 492 1.10e-12 70.5
Msa0123680 MtrunA17_Chr3g0116741 21.019 471 317 18 5 452 25 463 1.31e-12 70.5
Msa0123680 MtrunA17_Chr4g0058211 26.804 194 129 6 291 477 7 194 1.35e-12 67.4
Msa0123680 MtrunA17_Chr4g0044851 22.673 419 242 16 76 467 78 441 1.40e-12 70.1
Msa0123680 MtrunA17_Chr4g0052861 22.126 461 299 17 16 452 19 443 1.57e-12 70.1
Msa0123680 MtrunA17_Chr4g0011851 26.554 177 121 4 293 466 9 179 1.69e-12 67.0
Msa0123680 MtrunA17_Chr5g0445531 23.174 397 269 14 71 452 74 449 1.70e-12 70.1
Msa0123680 MtrunA17_Chr5g0445441 21.296 432 288 17 45 451 86 490 2.33e-12 69.7
Msa0123680 MtrunA17_Chr3g0101691 23.382 479 297 22 3 447 8 450 2.62e-12 69.3
Msa0123680 MtrunA17_Chr4g0047631 23.077 494 315 23 5 466 16 476 2.63e-12 69.3
Msa0123680 MtrunA17_Chr5g0430031 22.699 489 312 22 5 461 8 462 3.57e-12 68.9
Msa0123680 MtrunA17_Chr5g0445461 21.940 433 299 16 35 452 42 450 5.81e-12 68.2
Msa0123680 MtrunA17_Chr5g0403331 28.431 204 131 6 252 447 253 449 8.93e-12 67.8
Msa0123680 MtrunA17_Chr2g0280041 25.664 226 142 7 290 500 322 536 1.14e-11 67.4
Msa0123680 MtrunA17_Chr8g0372251 25.957 235 138 8 240 449 229 452 1.17e-11 67.4
Msa0123680 MtrunA17_Chr1g0164331 35.955 89 53 1 375 463 3 87 1.28e-11 62.8
Msa0123680 MtrunA17_Chr3g0082701 26.042 288 183 12 209 477 225 501 1.37e-11 67.0
Msa0123680 MtrunA17_Chr4g0024771 22.034 472 316 20 1 447 1 445 1.50e-11 67.0
Msa0123680 MtrunA17_Chr2g0296651 22.026 227 158 6 242 463 241 453 1.52e-11 67.0
Msa0123680 MtrunA17_Chr3g0101701 23.454 469 309 18 3 447 8 450 1.84e-11 66.6
Msa0123680 MtrunA17_Chr6g0451771 26.316 190 129 7 293 477 15 198 2.24e-11 63.9
Msa0123680 MtrunA17_Chr3g0135841 24.701 251 165 7 244 480 279 519 2.33e-11 66.2
Msa0123680 MtrunA17_Chr4g0052881 21.074 484 324 19 6 463 3 454 2.68e-11 66.2
Msa0123680 MtrunA17_Chr5g0446151 22.993 461 295 20 17 451 24 450 3.16e-11 65.9
Msa0123680 MtrunA17_Chr4g0017411 21.267 442 315 10 20 455 20 434 3.67e-11 65.5
Msa0123680 MtrunA17_Chr2g0314721 26.047 215 144 6 260 466 264 471 3.67e-11 65.9
Msa0123680 MtrunA17_Chr4g0039901 24.569 232 157 5 240 459 235 460 4.24e-11 65.5
Msa0123680 MtrunA17_Chr5g0445381 22.222 468 314 17 11 452 38 481 4.27e-11 65.5
Msa0123680 MtrunA17_Chr1g0197891 24.783 230 157 6 240 461 232 453 6.23e-11 65.1
Msa0123680 MtrunA17_Chr8g0334891 23.970 267 189 7 210 468 194 454 6.34e-11 65.1
Msa0123680 MtrunA17_Chr3g0107511 23.427 461 284 18 17 451 15 432 6.53e-11 64.7
Msa0123680 MtrunA17_Chr1g0205361 23.473 524 343 21 5 506 7 494 6.77e-11 64.7
Msa0123680 MtrunA17_Chr5g0406651 22.646 446 313 18 35 466 34 461 7.12e-11 64.7
Msa0123680 MtrunA17_Chr5g0408181 24.146 410 242 18 76 467 76 434 7.32e-11 64.7
Msa0123680 MtrunA17_Chr5g0431591 26.339 224 145 9 240 452 52 266 7.51e-11 63.5
Msa0123680 MtrunA17_Chr3g0141801 22.963 270 166 10 247 496 234 481 8.17e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123680 AT5G63450.1 45.562 507 263 8 1 499 1 502 6.97e-145 428
Msa0123680 AT5G63450.2 45.562 507 263 8 1 499 59 560 3.78e-144 428
Msa0123680 AT3G48520.1 45.800 500 261 7 6 499 4 499 6.32e-143 423
Msa0123680 AT3G56630.1 45.570 474 239 8 37 499 33 498 1.57e-138 411
Msa0123680 AT1G34540.1 44.304 474 244 8 37 499 33 497 5.37e-135 402
Msa0123680 AT3G01900.1 43.129 473 253 8 32 499 29 490 9.17e-129 386
Msa0123680 AT2G27690.1 44.105 458 237 6 50 499 48 494 1.31e-128 385
Msa0123680 AT5G08250.2 40.074 539 268 17 4 504 24 545 2.75e-116 356
Msa0123680 AT4G00360.1 39.286 504 273 12 35 513 30 525 3.14e-116 356
Msa0123680 AT5G08250.1 40.927 496 248 14 38 504 4 483 3.12e-115 351
Msa0123680 AT2G45970.1 37.807 529 294 13 4 508 2 519 6.13e-113 347
Msa0123680 AT5G23190.1 39.648 512 271 15 19 504 46 545 1.22e-112 347
Msa0123680 AT1G24540.1 39.010 505 272 10 20 499 27 520 7.47e-112 343
Msa0123680 AT1G63710.1 37.624 505 280 12 35 515 30 523 2.32e-110 340
Msa0123680 AT1G01600.1 38.132 514 281 13 35 520 30 534 6.23e-110 340
Msa0123680 AT5G58860.1 38.306 496 259 12 33 499 31 508 8.58e-103 320
Msa0123680 AT1G13140.1 39.271 494 260 14 39 503 46 528 1.10e-101 318
Msa0123680 AT3G26125.1 38.933 506 265 12 35 507 46 540 6.04e-101 316
Msa0123680 AT1G13150.1 37.045 494 275 11 35 503 39 521 6.69e-99 310
Msa0123680 AT1G69500.1 37.864 515 252 15 7 470 1 498 1.40e-97 306
Msa0123680 AT1G13140.2 37.728 493 243 14 39 503 46 502 1.06e-93 296
Msa0123680 AT2G21910.1 33.401 494 297 12 29 501 26 508 6.68e-93 294
Msa0123680 AT2G44890.1 36.739 509 278 15 5 491 14 500 1.77e-90 288
Msa0123680 AT2G45510.1 35.953 509 282 14 5 491 14 500 2.95e-90 287
Msa0123680 AT4G39490.1 32.580 531 310 11 6 501 1 518 3.87e-90 287
Msa0123680 AT1G65340.1 34.549 466 280 10 29 478 28 484 8.58e-90 286
Msa0123680 AT1G47620.1 34.100 522 304 13 4 499 8 515 2.42e-89 285
Msa0123680 AT2G44890.2 35.756 509 267 15 5 492 14 483 1.25e-87 280
Msa0123680 AT4G39480.1 33.902 528 306 13 5 502 2 516 1.89e-86 277
Msa0123680 AT2G23180.1 32.824 524 305 16 4 499 8 512 8.19e-86 276
Msa0123680 AT5G52320.1 32.298 483 305 9 29 498 28 501 1.39e-84 272
Msa0123680 AT4G32170.1 33.268 514 314 12 7 502 4 506 3.32e-84 271
Msa0123680 AT1G57750.1 33.137 510 305 14 7 500 8 497 3.33e-84 271
Msa0123680 AT5G52320.2 32.759 464 290 9 29 479 28 482 6.50e-84 270
Msa0123680 AT4G39510.1 32.364 516 318 12 7 502 4 508 2.91e-82 266
Msa0123680 AT4G39500.2 32.621 515 308 13 7 499 19 516 4.69e-82 266
Msa0123680 AT4G39500.1 33.970 471 276 12 51 499 9 466 7.14e-79 256
Msa0123680 AT1G57750.2 32.944 428 265 9 7 422 8 425 3.21e-72 238
Msa0123680 AT5G02900.1 30.185 487 278 12 6 468 1 449 3.44e-68 228
Msa0123680 AT3G53130.1 26.343 391 255 13 81 454 122 496 3.02e-28 119
Msa0123680 AT2G46660.1 23.840 474 333 17 35 499 74 528 3.05e-25 110
Msa0123680 AT3G48300.1 26.782 463 286 19 26 466 19 450 3.56e-24 106
Msa0123680 AT3G48300.2 26.782 463 286 19 26 466 21 452 3.61e-24 106
Msa0123680 AT1G31800.1 25.490 408 270 16 76 466 147 537 1.19e-23 105
Msa0123680 AT5G24900.1 25.553 407 253 13 85 466 115 496 2.00e-22 101
Msa0123680 AT4G13290.1 25.653 421 283 14 35 447 37 435 4.03e-22 100
Msa0123680 AT5G24900.2 25.495 404 251 13 88 466 1 379 4.64e-22 99.4
Msa0123680 AT3G14640.1 22.799 443 266 16 80 484 105 509 2.14e-21 98.2
Msa0123680 AT3G14640.2 22.799 443 266 16 80 484 127 531 2.20e-21 98.2
Msa0123680 AT4G13310.1 25.909 440 288 18 23 447 26 442 4.28e-21 97.1
Msa0123680 AT1G01190.1 23.028 469 322 14 19 473 61 504 4.41e-21 97.4
Msa0123680 AT1G01190.2 23.028 469 322 14 19 473 66 509 4.75e-21 97.4
Msa0123680 AT4G27710.1 24.109 477 307 17 35 494 74 512 2.57e-20 94.7
Msa0123680 AT5G52400.1 23.421 380 256 11 100 468 135 490 2.65e-20 94.7
Msa0123680 AT3G48280.1 25.495 455 298 18 6 445 3 431 3.54e-20 94.4
Msa0123680 AT3G14620.1 23.202 431 286 15 52 466 83 484 6.19e-20 93.6
Msa0123680 AT3G14680.1 24.664 446 261 17 76 484 100 507 6.93e-20 93.6
Msa0123680 AT2G46950.1 23.013 478 315 13 35 497 129 568 9.76e-20 93.2
Msa0123680 AT3G48310.1 24.711 433 285 17 26 445 28 432 1.01e-19 92.8
Msa0123680 AT3G48270.1 23.583 441 281 18 25 445 27 431 1.26e-19 92.4
Msa0123680 AT2G26710.1 26.536 407 251 13 76 463 103 480 1.74e-19 92.4
Msa0123680 AT4G15110.1 22.678 463 306 13 81 499 124 578 2.01e-19 92.4
Msa0123680 AT5G24910.1 23.951 405 263 13 85 466 119 501 2.81e-19 91.7
Msa0123680 AT3G61880.1 21.861 462 339 15 21 474 56 503 4.88e-19 90.9
Msa0123680 AT3G61880.2 21.861 462 339 15 21 474 56 503 7.66e-19 90.5
Msa0123680 AT5G24950.1 25.670 448 274 19 35 455 36 451 7.81e-19 90.1
Msa0123680 AT4G13770.1 23.062 529 356 22 4 511 3 501 9.59e-19 89.7
Msa0123680 AT5G36110.1 28.139 231 148 5 244 467 227 446 4.72e-18 87.8
Msa0123680 AT3G14630.1 23.380 432 267 17 61 466 84 477 5.44e-18 87.4
Msa0123680 AT3G14630.2 23.380 432 267 17 61 466 139 532 9.09e-18 87.0
Msa0123680 AT3G14660.1 23.874 444 266 16 53 466 80 481 1.36e-17 86.3
Msa0123680 AT5G42590.1 25.572 481 312 16 1 459 1 457 2.28e-17 85.5
Msa0123680 AT3G14690.1 25.581 430 233 18 76 466 100 481 2.37e-17 85.5
Msa0123680 AT3G14690.2 26.303 422 240 17 76 466 135 516 2.92e-17 85.5
Msa0123680 AT3G61040.1 30.213 235 144 7 245 466 233 460 4.31e-17 84.7
Msa0123680 AT5G05260.2 21.862 494 331 18 6 461 11 487 6.03e-17 84.3
Msa0123680 AT3G14660.2 27.917 240 143 9 243 466 110 335 4.25e-16 80.5
Msa0123680 AT4G37330.1 22.197 446 314 15 15 451 16 437 8.46e-16 80.9
Msa0123680 AT3G28740.1 25.217 345 215 12 123 451 131 448 9.03e-16 80.5
Msa0123680 AT2G42850.1 27.542 236 143 7 226 451 221 438 1.47e-15 79.7
Msa0123680 AT1G64930.1 26.776 183 127 3 289 467 297 476 1.57e-15 80.1
Msa0123680 AT2G46960.2 21.839 435 297 13 81 497 106 515 1.77e-15 79.7
Msa0123680 AT1G13710.1 22.973 518 327 22 4 489 19 496 2.44e-15 79.3
Msa0123680 AT2G46960.1 23.058 399 264 13 117 497 26 399 2.64e-15 78.6
Msa0123680 AT3G26210.1 24.112 394 255 17 81 451 77 449 2.66e-15 79.3
Msa0123680 AT4G37320.1 22.154 492 280 16 16 459 8 444 2.73e-15 79.0
Msa0123680 AT5G38450.1 23.514 370 244 10 113 466 139 485 2.95e-15 79.0
Msa0123680 AT3G25180.1 21.951 492 348 15 7 477 8 484 3.31e-15 79.0
Msa0123680 AT2G42250.1 29.891 184 115 6 290 466 301 477 5.60e-15 78.2
Msa0123680 AT1G64940.1 28.804 184 118 4 289 466 299 475 9.68e-15 77.4
Msa0123680 AT3G26230.1 21.905 525 342 16 7 496 1 492 1.39e-14 77.0
Msa0123680 AT2G30770.1 21.946 442 289 16 35 452 37 446 3.11e-14 75.9
Msa0123680 AT3G48320.1 25.427 468 290 21 1 445 1 432 4.30e-14 75.5
Msa0123680 AT3G48290.1 21.822 472 292 19 26 466 29 454 4.75e-14 75.1
Msa0123680 AT5G05260.1 21.721 488 307 19 6 461 11 455 5.06e-14 75.1
Msa0123680 AT1G11600.1 23.853 218 162 2 285 499 293 509 6.03e-14 75.1
Msa0123680 AT4G39950.1 22.680 485 311 19 35 483 60 516 6.49e-14 75.1
Msa0123680 AT4G39950.2 22.680 485 311 19 35 483 100 556 7.53e-14 74.7
Msa0123680 AT1G67110.1 21.531 418 280 10 88 484 115 505 7.96e-14 74.7
Msa0123680 AT5G57260.1 21.412 439 310 15 24 445 23 443 1.36e-13 73.9
Msa0123680 AT3G26280.1 22.637 455 311 15 19 451 17 452 1.98e-13 73.2
Msa0123680 AT1G64950.1 27.473 182 123 3 289 466 298 474 1.99e-13 73.2
Msa0123680 AT3G26280.2 22.737 453 313 16 19 451 34 469 2.62e-13 72.8
Msa0123680 AT1G13080.1 22.474 485 324 17 6 466 9 465 3.62e-13 72.4
Msa0123680 AT3G48290.2 29.878 164 107 4 306 466 322 480 5.93e-13 72.0
Msa0123680 AT2G25160.1 26.482 253 156 9 233 466 238 479 7.28e-13 71.6
Msa0123680 AT4G31940.1 24.335 263 175 9 240 485 248 503 9.74e-13 71.2
Msa0123680 AT1G11680.1 24.172 302 207 9 212 502 198 488 1.21e-12 70.9
Msa0123680 AT3G26300.1 21.225 457 321 13 6 445 6 440 1.93e-12 70.1
Msa0123680 AT3G03470.1 23.077 286 197 6 233 499 228 509 2.20e-12 70.1
Msa0123680 AT1G66540.2 25.561 223 145 6 242 459 66 272 3.35e-12 68.2
Msa0123680 AT2G45550.1 24.180 244 165 7 236 466 235 471 3.41e-12 69.3
Msa0123680 AT5G57220.1 21.909 461 316 15 16 459 14 447 4.12e-12 68.9
Msa0123680 AT1G66540.1 25.561 223 145 6 242 459 125 331 6.01e-12 68.2
Msa0123680 AT5G24960.1 24.229 454 293 19 24 455 28 452 7.33e-12 68.2
Msa0123680 AT5G36220.1 21.193 486 303 16 4 451 3 446 8.24e-12 68.2
Msa0123680 AT2G23190.1 23.299 485 316 18 1 463 45 495 8.70e-12 68.2
Msa0123680 AT2G12190.1 25.824 182 128 3 289 466 298 476 1.00e-11 67.8
Msa0123680 AT2G45570.1 28.016 257 152 12 228 466 231 472 1.02e-11 67.8
Msa0123680 AT3G26310.1 21.460 452 318 16 10 445 9 439 1.08e-11 67.8
Msa0123680 AT2G22330.1 22.026 454 311 19 35 461 62 499 1.12e-11 67.8
Msa0123680 AT3G10560.1 20.842 499 335 16 35 508 50 513 1.15e-11 67.8
Msa0123680 AT2G22330.2 22.026 454 311 19 35 461 85 522 1.15e-11 67.8
Msa0123680 AT4G37430.1 23.319 476 311 20 10 459 9 456 1.25e-11 67.8
Msa0123680 AT2G29090.3 25.806 217 142 4 258 467 154 358 1.34e-11 67.0
Msa0123680 AT4G31970.1 23.922 255 170 9 240 477 247 494 1.70e-11 67.4
Msa0123680 AT2G29090.2 25.820 244 152 5 258 494 249 470 1.96e-11 67.0
Msa0123680 AT2G29090.1 25.820 244 152 5 258 494 249 470 1.96e-11 67.0
Msa0123680 AT2G27010.1 23.176 233 162 7 242 463 221 447 3.12e-11 66.2
Msa0123680 AT4G15360.1 21.304 460 327 15 9 451 16 457 3.90e-11 66.2
Msa0123680 AT1G73340.1 20.174 461 311 17 12 455 20 440 4.03e-11 65.9
Msa0123680 AT1G13110.1 20.576 486 338 18 6 466 5 467 4.33e-11 65.9
Msa0123680 AT5G25900.1 25.220 341 222 16 162 486 171 494 5.21e-11 65.9
Msa0123680 AT4G37400.1 22.222 459 315 16 19 459 19 453 6.05e-11 65.5
Msa0123680 AT2G14100.1 24.038 208 143 6 255 453 260 461 6.48e-11 65.5

Find 146 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCATTATGAGGGAGTTT+AGG 0.203209 1_3:+50991469 Msa0123680:CDS
AGCTTTCACAAACGCGATTT+CGG 0.216014 1_3:-50990701 None:intergenic
GGGAATTGTGGAGGGTGTTT+TGG 0.219039 1_3:-50990173 None:intergenic
CTTGTTACGCAACATGTTTA+TGG 0.248871 1_3:-50992488 None:intergenic
CGATCCCTCTTCGAGTTTCT+AGG 0.256251 1_3:+50990412 Msa0123680:CDS
TGGGAAGGTCTGAGAAAATA+TGG 0.259141 1_3:+50991280 Msa0123680:CDS
CTGCACTCACGTGGTTCTTT+TGG 0.262457 1_3:+50991019 Msa0123680:CDS
GCTTTCACAAACGCGATTTC+GGG 0.264440 1_3:-50990700 None:intergenic
ACGCTGCTATTCCATTTCTA+TGG 0.266706 1_3:+50990761 Msa0123680:CDS
ATGCGCTTCTCGATCTTTAC+TGG 0.272119 1_3:-50991567 None:intergenic
TGGCATTATGAGGGAGTTTA+GGG 0.289127 1_3:+50991470 Msa0123680:CDS
CCACTGTTTCAACGAATTTA+CGG 0.293796 1_3:-50990516 None:intergenic
AACAAAGAAACCAATGTTTC+GGG 0.297667 1_3:-50990097 None:intergenic
GTGATAAGCTTTATTCTTGC+TGG 0.302739 1_3:+50990979 Msa0123680:CDS
CAGATGAAGAGGTTGGTTAT+TGG 0.303753 1_3:+50991450 Msa0123680:CDS
TGGAGAATATCTTGAAAATC+AGG 0.314859 1_3:-50990607 None:intergenic
GGAAATCTAGCTATCGAAAT+TGG 0.320350 1_3:+50992520 Msa0123680:CDS
GGTTGGTTATTGGCATTATG+AGG 0.323632 1_3:+50991460 Msa0123680:CDS
TTACGATGAGGTGAAGGATA+TGG 0.331983 1_3:+50991113 Msa0123680:CDS
CTGGGCCGAGGGTGTGTTTA+GGG 0.335396 1_3:+50991409 Msa0123680:CDS
GTCGAGCTGACGATGGAAAA+TGG 0.339965 1_3:+50991343 Msa0123680:CDS
GCTGGGCCGAGGGTGTGTTT+AGG 0.340311 1_3:+50991408 Msa0123680:CDS
GGGATTTAGTATTGAATTCA+TGG 0.352781 1_3:-50990492 None:intergenic
TAACAAAGAAACCAATGTTT+CGG 0.355766 1_3:-50990098 None:intergenic
AATATTTGCATAATCGCGTT+TGG 0.357467 1_3:+50990646 Msa0123680:CDS
CACCTTTCATTATTGAAGTA+AGG 0.357913 1_3:-50991539 None:intergenic
CCCAACTCTTACCCTATCAT+TGG 0.368091 1_3:+50990193 Msa0123680:CDS
TCCTTGGCATCCACCGGAAC+TGG 0.375599 1_3:-50991180 None:intergenic
GAAAATCAGGGAGAATCATT+TGG 0.378443 1_3:-50990594 None:intergenic
AGGAGCCGAAGGGGCGGTGG+AGG 0.391442 1_3:-50990303 None:intergenic
AATGGATCCTTATACTTATC+CGG 0.392782 1_3:+50991377 Msa0123680:CDS
GATGGAAAATGGAGCTTTGT+TGG 0.421609 1_3:+50991354 Msa0123680:CDS
ATGTTGCGTAACAAGTCTTA+TGG 0.421762 1_3:+50992496 Msa0123680:CDS
GTCGCTCGGTTCCAATGTTT+AGG 0.423710 1_3:-50990798 None:intergenic
AGCAGGAGCCGAAGGGGCGG+TGG 0.424339 1_3:-50990306 None:intergenic
TTCTTCACTAATGTTCCATC+TGG 0.425736 1_3:-50991225 None:intergenic
GGAAACACAGAACCAATGAT+AGG 0.426161 1_3:-50990205 None:intergenic
TTTGTCCTCCACCGCCCCTT+CGG 0.430781 1_3:+50990298 Msa0123680:CDS
TTGGAAGCTTCATGGAGAAT+AGG 0.435384 1_3:-50990568 None:intergenic
GGCTTCTTTCAACCGTCGCT+CGG 0.437548 1_3:-50990812 None:intergenic
TGGAGGAAGGTATAGTTTGA+AGG 0.441079 1_3:-50990273 None:intergenic
GGGAAGGTCTGAGAAAATAT+GGG 0.449056 1_3:+50991281 Msa0123680:CDS
ATCAAAGAAGATTCATGAAA+GGG 0.453741 1_3:+50992428 Msa0123680:CDS
GAAAATATGGGGATCCGATT+GGG 0.454172 1_3:+50991293 Msa0123680:CDS
AGAAAATATGGGGATCCGAT+TGG 0.462705 1_3:+50991292 Msa0123680:CDS
ATCATCGTAGGCTGCTTCCT+TGG 0.463298 1_3:-50991196 None:intergenic
TTTAGTATTGAATTCATGGC+TGG 0.464425 1_3:-50990488 None:intergenic
TGATAAGCTTTATTCTTGCT+GGG 0.466948 1_3:+50990980 Msa0123680:CDS
TGCGTATCATGTATATGCTA+TGG 0.467152 1_3:+50991260 Msa0123680:CDS
GGGGCGGTGGAGGACAAAGG+TGG 0.470072 1_3:-50990293 None:intergenic
GAGATTGTATCCTCCAGTTC+CGG 0.471458 1_3:+50991167 Msa0123680:CDS
GCGGTGGAGGACAAAGGTGG+AGG 0.473309 1_3:-50990290 None:intergenic
CGGTGGAAGTTGGCTGCAAT+GGG 0.476303 1_3:-50990226 None:intergenic
GTGCTTCCAGCGATGGATGA+AGG 0.478116 1_3:+50991492 Msa0123680:CDS
GATGGAACATTAGTGAAGAA+AGG 0.482838 1_3:+50991228 Msa0123680:CDS
AGGGTAAGAGTTGGGAATTG+TGG 0.485525 1_3:-50990185 None:intergenic
AGAAAAGACAACCTTGGAAT+CGG 0.487161 1_3:+50990894 Msa0123680:CDS
AACGCGATTTCGGGAAGAGA+AGG 0.487878 1_3:-50990691 None:intergenic
GTTTAGGGTGCTTCCAGCGA+TGG 0.488226 1_3:+50991485 Msa0123680:CDS
GAAGCCGTCGCTGAAGTAAG+AGG 0.493725 1_3:+50990829 Msa0123680:CDS
AGAATATGTTGGACTACGGC+GGG 0.495728 1_3:-50990346 None:intergenic
GCTCGACTCAACCACCTCTC+AGG 0.503978 1_3:-50991327 None:intergenic
AGGTCGAAACTCAGCCCAAT+CGG 0.504301 1_3:-50991307 None:intergenic
AAAATGGAGCTTTGTTGGAA+TGG 0.504854 1_3:+50991359 Msa0123680:CDS
ACGGTGGAAGTTGGCTGCAA+TGG 0.508690 1_3:-50990227 None:intergenic
TGCTTCCAGCGATGGATGAA+GGG 0.514603 1_3:+50991493 Msa0123680:CDS
AAAAGATTCATCTGAATGAC+CGG 0.516142 1_3:-50990944 None:intergenic
AAGCATTTGATATTATTGAC+TGG 0.516709 1_3:+50992551 Msa0123680:CDS
TCAACACTGACGGTGAAAGT+TGG 0.517905 1_3:+50990446 Msa0123680:CDS
TCTTTCCCTAAACACACCCT+CGG 0.519430 1_3:-50991414 None:intergenic
CAAAATATCCACCGATTCCA+AGG 0.519645 1_3:-50990905 None:intergenic
TTTGTTGTAGCAAGGGAAGT+TGG 0.522871 1_3:-50990374 None:intergenic
ACCAATGATAGGGTAAGAGT+TGG 0.526133 1_3:-50990194 None:intergenic
ACTTCCACCGTCTCATACAA+TGG 0.527713 1_3:+50990239 Msa0123680:CDS
CTCTTCGAGTTTCTAGGTAA+CGG 0.528060 1_3:+50990418 Msa0123680:CDS
GTTGGTTATTGGCATTATGA+GGG 0.528173 1_3:+50991461 Msa0123680:CDS
ATGGAACATTAGTGAAGAAA+GGG 0.533849 1_3:+50991229 Msa0123680:CDS
CCAAATGGAACCCGAAACAT+TGG 0.536157 1_3:+50990087 None:intergenic
CACCTTACTTCAATAATGAA+AGG 0.538300 1_3:+50991537 Msa0123680:CDS
GATGACTGAGCAGGAGCCGA+AGG 0.540330 1_3:-50990314 None:intergenic
TTTGAGAATATGTTGGACTA+CGG 0.543743 1_3:-50990350 None:intergenic
GATCAAAGAAGATTCATGAA+AGG 0.543874 1_3:+50992427 Msa0123680:CDS
CATGAAAGGGAGACAAATCA+AGG 0.544622 1_3:+50992441 Msa0123680:CDS
CCAATGATAGGGTAAGAGTT+GGG 0.544743 1_3:-50990193 None:intergenic
GCGTATCATGTATATGCTAT+GGG 0.544791 1_3:+50991261 Msa0123680:CDS
GCTGCTTCCTTGGCATCCAC+CGG 0.546000 1_3:-50991186 None:intergenic
AAGAGGGATCGATGAAATGT+AGG 0.546407 1_3:-50990400 None:intergenic
GTAGGACCTTTGTTGTAGCA+AGG 0.550558 1_3:-50990382 None:intergenic
TCCAGTTCCGGTGGATGCCA+AGG 0.553592 1_3:+50991179 Msa0123680:CDS
GTTCTTACAGATGAAGAGGT+TGG 0.560529 1_3:+50991443 Msa0123680:CDS
TAGGACCTTTGTTGTAGCAA+GGG 0.561102 1_3:-50990381 None:intergenic
GAAGGGGCGGTGGAGGACAA+AGG 0.561542 1_3:-50990296 None:intergenic
GAGAATATGTTGGACTACGG+CGG 0.563808 1_3:-50990347 None:intergenic
GTAAGGTGTGAATCAAACTC+TGG 0.564216 1_3:-50991522 None:intergenic
ACGCGATTTCGGGAAGAGAA+GGG 0.564509 1_3:-50990690 None:intergenic
TGGAGGACAAAGGTGGAGGA+AGG 0.566372 1_3:-50990286 None:intergenic
GCTTAAAGAAAAGACAACCT+TGG 0.566936 1_3:+50990888 Msa0123680:CDS
TCAACCCCTTCATCCATCGC+TGG 0.566996 1_3:-50991498 None:intergenic
AGTTAGTTACGATGAGGTGA+AGG 0.569800 1_3:+50991107 Msa0123680:CDS
AACTTCCCTTGCTACAACAA+AGG 0.571997 1_3:+50990376 Msa0123680:CDS
TGGCGTTCTTACAGATGAAG+AGG 0.573982 1_3:+50991439 Msa0123680:CDS
GTTAGCCGTGATGACTGAGC+AGG 0.574143 1_3:-50990323 None:intergenic
GAACATTAGTGAAGAAAGGG+TGG 0.574370 1_3:+50991232 Msa0123680:CDS
TAAGAGTTGGGAATTGTGGA+GGG 0.574382 1_3:-50990181 None:intergenic
AATCGCGTTTGGATTCGATC+CGG 0.575283 1_3:+50990657 Msa0123680:CDS
GGAGAATATCTTGAAAATCA+GGG 0.581457 1_3:-50990606 None:intergenic
CTAGCTATCGAAATTGGCAT+AGG 0.584781 1_3:+50992526 Msa0123680:CDS
TATTATCAAACGTAAAACGT+TGG 0.585019 1_3:-50990627 None:intergenic
AAAGACAACCTTGGAATCGG+TGG 0.587007 1_3:+50990897 Msa0123680:CDS
CTGAGCAGGAGCCGAAGGGG+CGG 0.594123 1_3:-50990309 None:intergenic
GAAACACAGAACCAATGATA+GGG 0.598974 1_3:-50990204 None:intergenic
AGAGAAGGGAGGAGATACTC+CGG 0.603307 1_3:-50990676 None:intergenic
TAAACATTGGAACCGAGCGA+CGG 0.603550 1_3:+50990800 Msa0123680:CDS
CACTGACGGTGAAAGTTGGA+AGG 0.604210 1_3:+50990450 Msa0123680:CDS
AACGGTATCTTCAACACTGA+CGG 0.607723 1_3:+50990436 Msa0123680:CDS
GGTGTGTTTAGGGAAAGAAA+TGG 0.608381 1_3:+50991419 Msa0123680:CDS
ATGACTGAGCAGGAGCCGAA+GGG 0.610143 1_3:-50990313 None:intergenic
ATCATGTATATGCTATGGGA+AGG 0.611232 1_3:+50991265 Msa0123680:CDS
TTGCGTAACAAGTCTTATGG+TGG 0.612309 1_3:+50992499 Msa0123680:CDS
CTTACTTCAATAATGAAAGG+TGG 0.615026 1_3:+50991540 Msa0123680:CDS
TTGTATGAGACGGTGGAAGT+TGG 0.615087 1_3:-50990236 None:intergenic
ATTGTATCCTCCAGTTCCGG+TGG 0.618690 1_3:+50991170 Msa0123680:CDS
CAACTTCAGCTGCACTCACG+TGG 0.619047 1_3:+50991010 Msa0123680:CDS
CGGCTCCTGCTCAGTCATCA+CGG 0.619119 1_3:+50990318 Msa0123680:CDS
GTAAGAGTTGGGAATTGTGG+AGG 0.620412 1_3:-50990182 None:intergenic
CCGTAAATTCGTTGAAACAG+TGG 0.620663 1_3:+50990516 Msa0123680:CDS
GTTACCTAGAAACTCGAAGA+GGG 0.622020 1_3:-50990416 None:intergenic
CAGAAATCCATTGTATGAGA+CGG 0.623795 1_3:-50990246 None:intergenic
TTGGCATCCACCGGAACTGG+AGG 0.626326 1_3:-50991177 None:intergenic
GCTTCCAGCGATGGATGAAG+GGG 0.630676 1_3:+50991494 Msa0123680:CDS
TAAATTCGTTGAAACAGTGG+TGG 0.636887 1_3:+50990519 Msa0123680:CDS
TGGTTGAGTCGAGCTGACGA+TGG 0.638987 1_3:+50991336 Msa0123680:CDS
CTGTTTCAACGAATTTACGG+AGG 0.644696 1_3:-50990513 None:intergenic
ATCTGGCAAAACATCATCGT+AGG 0.646289 1_3:-50991208 None:intergenic
AAATCCATTGTATGAGACGG+TGG 0.646982 1_3:-50990243 None:intergenic
GAGTCCTCTTACTTCAGCGA+CGG 0.647743 1_3:-50990833 None:intergenic
TGACTGAGCAGGAGCCGAAG+GGG 0.648695 1_3:-50990312 None:intergenic
GGAAGGTCTGAGAAAATATG+GGG 0.648867 1_3:+50991282 Msa0123680:CDS
CTGAGTTTCGACCTGAGAGG+TGG 0.648894 1_3:+50991316 Msa0123680:CDS
TGTTTCAACGAATTTACGGA+GGG 0.662420 1_3:-50990512 None:intergenic
GGGCTGAGTTTCGACCTGAG+AGG 0.665153 1_3:+50991313 Msa0123680:CDS
AATGATAGTTAGTTACGATG+AGG 0.669710 1_3:+50991101 Msa0123680:CDS
CGTTACCTAGAAACTCGAAG+AGG 0.684043 1_3:-50990417 None:intergenic
GAATATGTTGGACTACGGCG+GGG 0.690197 1_3:-50990345 None:intergenic
CGATTTCGGGAAGAGAAGGG+AGG 0.696110 1_3:-50990687 None:intergenic
GCACACGAATCAGCAGCGAG+AGG 0.705897 1_3:+50990734 Msa0123680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTACAATATAATGTA+AGG + chr1_3:50991609-50991628 Msa0123680:intron 15.0%
!!! ATTCATTCATTCATTTTATA+GGG + chr1_3:50991861-50991880 Msa0123680:intron 15.0%
!!! TTTTACAATATAATGTAAGG+TGG + chr1_3:50991612-50991631 Msa0123680:intron 20.0%
!!! TTTTAATTTGAATCAGATGT+TGG + chr1_3:50991780-50991799 Msa0123680:intron 20.0%
!!! CATTCATTCATTCATTTTAT+AGG + chr1_3:50991860-50991879 Msa0123680:intron 20.0%
!!! TTCATTCATTCATTTTATAG+GGG + chr1_3:50991862-50991881 Msa0123680:intron 20.0%
!!! AGAATAATGTGTTTTTCTTA+TGG - chr1_3:50991907-50991926 None:intergenic 20.0%
!!! ATTTTTCTTTCAGACATTAT+GGG + chr1_3:50992177-50992196 Msa0123680:intron 20.0%
!! TTGAATTATTTACATCTAAC+TGG + chr1_3:50992237-50992256 Msa0123680:intron 20.0%
!! ACAATATTTGCATTCATATT+TGG - chr1_3:50992269-50992288 None:intergenic 20.0%
!!! GTATCTTCATTTGAAATTTT+GGG - chr1_3:50992301-50992320 None:intergenic 20.0%
!!! AGTATCTTCATTTGAAATTT+TGG - chr1_3:50992302-50992321 None:intergenic 20.0%
!!! TTTACAAAATTGTTGCTTAT+AGG + chr1_3:50992371-50992390 Msa0123680:intron 20.0%
!!! TGATCTTTTGATATAATATC+AGG - chr1_3:50992412-50992431 None:intergenic 20.0%
! TAACAAAGAAACCAATGTTT+CGG - chr1_3:50990101-50990120 None:intergenic 25.0%
! TATTATCAAACGTAAAACGT+TGG - chr1_3:50990630-50990649 None:intergenic 25.0%
!! TTTTTCACTTTCCATAGAAA+TGG - chr1_3:50990775-50990794 None:intergenic 25.0%
! GTGAAAAAATTCCTAAACAT+TGG + chr1_3:50990787-50990806 Msa0123680:CDS 25.0%
!! TTCTTTATTTCTTCTATGGA+AGG - chr1_3:50992108-50992127 None:intergenic 25.0%
!! TGCATTCTTTATTTCTTCTA+TGG - chr1_3:50992112-50992131 None:intergenic 25.0%
!! CATTTTTCTTTCAGACATTA+TGG + chr1_3:50992176-50992195 Msa0123680:intron 25.0%
!! TTGAAATTTTCCATAGCAAT+AGG - chr1_3:50992340-50992359 None:intergenic 25.0%
! ATCAAAGAAGATTCATGAAA+GGG + chr1_3:50992428-50992447 Msa0123680:CDS 25.0%
! AAGCATTTGATATTATTGAC+TGG + chr1_3:50992551-50992570 Msa0123680:CDS 25.0%
AACAAAGAAACCAATGTTTC+GGG - chr1_3:50990100-50990119 None:intergenic 30.0%
!!! TGTTTTGGATCGTTTTTTTG+TGG - chr1_3:50990161-50990180 None:intergenic 30.0%
TTTGAGAATATGTTGGACTA+CGG - chr1_3:50990353-50990372 None:intergenic 30.0%
!!! AGTTGGTTTTGAGAATATGT+TGG - chr1_3:50990360-50990379 None:intergenic 30.0%
! TTTAGTATTGAATTCATGGC+TGG - chr1_3:50990491-50990510 None:intergenic 30.0%
! GGGATTTAGTATTGAATTCA+TGG - chr1_3:50990495-50990514 None:intergenic 30.0%
GGAGAATATCTTGAAAATCA+GGG - chr1_3:50990609-50990628 None:intergenic 30.0%
TGGAGAATATCTTGAAAATC+AGG - chr1_3:50990610-50990629 None:intergenic 30.0%
AATATTTGCATAATCGCGTT+TGG + chr1_3:50990646-50990665 Msa0123680:CDS 30.0%
! CTTTTCCCTAACAATTTTTG+TGG - chr1_3:50990860-50990879 None:intergenic 30.0%
AAAAGATTCATCTGAATGAC+CGG - chr1_3:50990947-50990966 None:intergenic 30.0%
!! TGATAAGCTTTATTCTTGCT+GGG + chr1_3:50990980-50990999 Msa0123680:CDS 30.0%
AATGATAGTTAGTTACGATG+AGG + chr1_3:50991101-50991120 Msa0123680:CDS 30.0%
ATGGAACATTAGTGAAGAAA+GGG + chr1_3:50991229-50991248 Msa0123680:CDS 30.0%
AATGGATCCTTATACTTATC+CGG + chr1_3:50991377-50991396 Msa0123680:CDS 30.0%
TGAAAAACCGGATAAGTATA+AGG - chr1_3:50991387-50991406 None:intergenic 30.0%
CACCTTACTTCAATAATGAA+AGG + chr1_3:50991537-50991556 Msa0123680:CDS 30.0%
CACCTTTCATTATTGAAGTA+AGG - chr1_3:50991542-50991561 None:intergenic 30.0%
CTTACTTCAATAATGAAAGG+TGG + chr1_3:50991540-50991559 Msa0123680:CDS 30.0%
! TCCTTTTCTTGTCTCAATTA+AGG + chr1_3:50991686-50991705 Msa0123680:intron 30.0%
TCCTTAATTGAGACAAGAAA+AGG - chr1_3:50991690-50991709 None:intergenic 30.0%
AATGATGTGCATGACAATAT+GGG + chr1_3:50992019-50992038 Msa0123680:intron 30.0%
GTCATTCCATCTTTAGTAAA+TGG + chr1_3:50992054-50992073 Msa0123680:intron 30.0%
GTAGTACCATTTACTAAAGA+TGG - chr1_3:50992063-50992082 None:intergenic 30.0%
TCAGTTTATACCTATTGCTA+TGG + chr1_3:50992327-50992346 Msa0123680:intron 30.0%
GATCAAAGAAGATTCATGAA+AGG + chr1_3:50992427-50992446 Msa0123680:CDS 30.0%
GAAACACAGAACCAATGATA+GGG - chr1_3:50990207-50990226 None:intergenic 35.0%
CAGAAATCCATTGTATGAGA+CGG - chr1_3:50990249-50990268 None:intergenic 35.0%
TGTTTCAACGAATTTACGGA+GGG - chr1_3:50990515-50990534 None:intergenic 35.0%
CCACTGTTTCAACGAATTTA+CGG - chr1_3:50990519-50990538 None:intergenic 35.0%
TAAATTCGTTGAAACAGTGG+TGG + chr1_3:50990519-50990538 Msa0123680:CDS 35.0%
!!! TTTGGTTTTTGGAAGCTTCA+TGG - chr1_3:50990579-50990598 None:intergenic 35.0%
!!! AGGGAGAATCATTTGGTTTT+TGG - chr1_3:50990590-50990609 None:intergenic 35.0%
GAAAATCAGGGAGAATCATT+TGG - chr1_3:50990597-50990616 None:intergenic 35.0%
ACTCGCCACAAAAATTGTTA+GGG + chr1_3:50990852-50990871 Msa0123680:CDS 35.0%
GCTTAAAGAAAAGACAACCT+TGG + chr1_3:50990888-50990907 Msa0123680:CDS 35.0%
AGAAAAGACAACCTTGGAAT+CGG + chr1_3:50990894-50990913 Msa0123680:CDS 35.0%
!!! TTGTCGCGATTTTTAAGTTC+CGG + chr1_3:50990925-50990944 Msa0123680:CDS 35.0%
!! GTGATAAGCTTTATTCTTGC+TGG + chr1_3:50990979-50990998 Msa0123680:CDS 35.0%
TTCTTCACTAATGTTCCATC+TGG - chr1_3:50991228-50991247 None:intergenic 35.0%
GATGGAACATTAGTGAAGAA+AGG + chr1_3:50991228-50991247 Msa0123680:CDS 35.0%
TGCGTATCATGTATATGCTA+TGG + chr1_3:50991260-50991279 Msa0123680:CDS 35.0%
GCGTATCATGTATATGCTAT+GGG + chr1_3:50991261-50991280 Msa0123680:CDS 35.0%
ATCATGTATATGCTATGGGA+AGG + chr1_3:50991265-50991284 Msa0123680:CDS 35.0%
!! AAAATGGAGCTTTGTTGGAA+TGG + chr1_3:50991359-50991378 Msa0123680:CDS 35.0%
GTTGGTTATTGGCATTATGA+GGG + chr1_3:50991461-50991480 Msa0123680:CDS 35.0%
GGTACTAAATGATCGTAATG+AGG + chr1_3:50991809-50991828 Msa0123680:intron 35.0%
TTCTTTGTCTCTTGTCTGTT+CGG + chr1_3:50991982-50992001 Msa0123680:intron 35.0%
CAATGATGTGCATGACAATA+TGG + chr1_3:50992018-50992037 Msa0123680:intron 35.0%
TGTTCTCAATGAGTAGAGAT+GGG + chr1_3:50992133-50992152 Msa0123680:intron 35.0%
CTTGTTACGCAACATGTTTA+TGG - chr1_3:50992491-50992510 None:intergenic 35.0%
ATGTTGCGTAACAAGTCTTA+TGG + chr1_3:50992496-50992515 Msa0123680:CDS 35.0%
GGAAATCTAGCTATCGAAAT+TGG + chr1_3:50992520-50992539 Msa0123680:CDS 35.0%
TAAGAGTTGGGAATTGTGGA+GGG - chr1_3:50990184-50990203 None:intergenic 40.0%
CCAATGATAGGGTAAGAGTT+GGG - chr1_3:50990196-50990215 None:intergenic 40.0%
ACCAATGATAGGGTAAGAGT+TGG - chr1_3:50990197-50990216 None:intergenic 40.0%
GGAAACACAGAACCAATGAT+AGG - chr1_3:50990208-50990227 None:intergenic 40.0%
AAATCCATTGTATGAGACGG+TGG - chr1_3:50990246-50990265 None:intergenic 40.0%
! TGGAGGAAGGTATAGTTTGA+AGG - chr1_3:50990276-50990295 None:intergenic 40.0%
! TTTGTTGTAGCAAGGGAAGT+TGG - chr1_3:50990377-50990396 None:intergenic 40.0%
AACTTCCCTTGCTACAACAA+AGG + chr1_3:50990376-50990395 Msa0123680:CDS 40.0%
! TAGGACCTTTGTTGTAGCAA+GGG - chr1_3:50990384-50990403 None:intergenic 40.0%
AAGAGGGATCGATGAAATGT+AGG - chr1_3:50990403-50990422 None:intergenic 40.0%
GTTACCTAGAAACTCGAAGA+GGG - chr1_3:50990419-50990438 None:intergenic 40.0%
! CTCTTCGAGTTTCTAGGTAA+CGG + chr1_3:50990418-50990437 Msa0123680:CDS 40.0%
AACGGTATCTTCAACACTGA+CGG + chr1_3:50990436-50990455 Msa0123680:CDS 40.0%
CTGTTTCAACGAATTTACGG+AGG - chr1_3:50990516-50990535 None:intergenic 40.0%
CCGTAAATTCGTTGAAACAG+TGG + chr1_3:50990516-50990535 Msa0123680:CDS 40.0%
TTGGAAGCTTCATGGAGAAT+AGG - chr1_3:50990571-50990590 None:intergenic 40.0%
AGCTTTCACAAACGCGATTT+CGG - chr1_3:50990704-50990723 None:intergenic 40.0%
ACGCTGCTATTCCATTTCTA+TGG + chr1_3:50990761-50990780 Msa0123680:CDS 40.0%
GACTCGCCACAAAAATTGTT+AGG + chr1_3:50990851-50990870 Msa0123680:CDS 40.0%
!! CAAAATATCCACCGATTCCA+AGG - chr1_3:50990908-50990927 None:intergenic 40.0%
AGTTAGTTACGATGAGGTGA+AGG + chr1_3:50991107-50991126 Msa0123680:CDS 40.0%
TTACGATGAGGTGAAGGATA+TGG + chr1_3:50991113-50991132 Msa0123680:CDS 40.0%
ATCTGGCAAAACATCATCGT+AGG - chr1_3:50991211-50991230 None:intergenic 40.0%
! TACGATGATGTTTTGCCAGA+TGG + chr1_3:50991210-50991229 Msa0123680:CDS 40.0%
GAACATTAGTGAAGAAAGGG+TGG + chr1_3:50991232-50991251 Msa0123680:CDS 40.0%
TGGGAAGGTCTGAGAAAATA+TGG + chr1_3:50991280-50991299 Msa0123680:CDS 40.0%
GGGAAGGTCTGAGAAAATAT+GGG + chr1_3:50991281-50991300 Msa0123680:CDS 40.0%
GGAAGGTCTGAGAAAATATG+GGG + chr1_3:50991282-50991301 Msa0123680:CDS 40.0%
AGAAAATATGGGGATCCGAT+TGG + chr1_3:50991292-50991311 Msa0123680:CDS 40.0%
GAAAATATGGGGATCCGATT+GGG + chr1_3:50991293-50991312 Msa0123680:CDS 40.0%
! GATGGAAAATGGAGCTTTGT+TGG + chr1_3:50991354-50991373 Msa0123680:CDS 40.0%
!!! ACTTATCCGGTTTTTCAAGC+TGG + chr1_3:50991390-50991409 Msa0123680:CDS 40.0%
!!! CTTATCCGGTTTTTCAAGCT+GGG + chr1_3:50991391-50991410 Msa0123680:CDS 40.0%
GGTGTGTTTAGGGAAAGAAA+TGG + chr1_3:50991419-50991438 Msa0123680:CDS 40.0%
GTTCTTACAGATGAAGAGGT+TGG + chr1_3:50991443-50991462 Msa0123680:CDS 40.0%
! CAGATGAAGAGGTTGGTTAT+TGG + chr1_3:50991450-50991469 Msa0123680:CDS 40.0%
! GGTTGGTTATTGGCATTATG+AGG + chr1_3:50991460-50991479 Msa0123680:CDS 40.0%
TTGGCATTATGAGGGAGTTT+AGG + chr1_3:50991469-50991488 Msa0123680:CDS 40.0%
TGGCATTATGAGGGAGTTTA+GGG + chr1_3:50991470-50991489 Msa0123680:CDS 40.0%
GTAAGGTGTGAATCAAACTC+TGG - chr1_3:50991525-50991544 None:intergenic 40.0%
TTGCACCCAAAAGAAATGCA+AGG + chr1_3:50991639-50991658 Msa0123680:intron 40.0%
! CACGTCCTTGCATTTCTTTT+GGG - chr1_3:50991647-50991666 None:intergenic 40.0%
! ACACGTCCTTGCATTTCTTT+TGG - chr1_3:50991648-50991667 None:intergenic 40.0%
AAAGAAATGCAAGGACGTGT+AGG + chr1_3:50991648-50991667 Msa0123680:intron 40.0%
TTGAATCAGATGTTGGTGTG+TGG + chr1_3:50991787-50991806 Msa0123680:intron 40.0%
TGAATCAGATGTTGGTGTGT+GGG + chr1_3:50991788-50991807 Msa0123680:intron 40.0%
ACAATATGGGCTCATTGAAG+AGG + chr1_3:50992032-50992051 Msa0123680:intron 40.0%
GTGTTCTCAATGAGTAGAGA+TGG + chr1_3:50992132-50992151 Msa0123680:intron 40.0%
GTTCTCAATGAGTAGAGATG+GGG + chr1_3:50992134-50992153 Msa0123680:intron 40.0%
AAAATGCACCAAAACCATCC+AGG - chr1_3:50992162-50992181 None:intergenic 40.0%
CATGAAAGGGAGACAAATCA+AGG + chr1_3:50992441-50992460 Msa0123680:CDS 40.0%
! TTGCGTAACAAGTCTTATGG+TGG + chr1_3:50992499-50992518 Msa0123680:CDS 40.0%
CTAGCTATCGAAATTGGCAT+AGG + chr1_3:50992526-50992545 Msa0123680:CDS 40.0%
GTAAGAGTTGGGAATTGTGG+AGG - chr1_3:50990185-50990204 None:intergenic 45.0%
AGGGTAAGAGTTGGGAATTG+TGG - chr1_3:50990188-50990207 None:intergenic 45.0%
CCCAACTCTTACCCTATCAT+TGG + chr1_3:50990193-50990212 Msa0123680:CDS 45.0%
TTGTATGAGACGGTGGAAGT+TGG - chr1_3:50990239-50990258 None:intergenic 45.0%
ACTTCCACCGTCTCATACAA+TGG + chr1_3:50990239-50990258 Msa0123680:CDS 45.0%
AGAATATGTTGGACTACGGC+GGG - chr1_3:50990349-50990368 None:intergenic 45.0%
GAGAATATGTTGGACTACGG+CGG - chr1_3:50990350-50990369 None:intergenic 45.0%
! GTAGGACCTTTGTTGTAGCA+AGG - chr1_3:50990385-50990404 None:intergenic 45.0%
CGTTACCTAGAAACTCGAAG+AGG - chr1_3:50990420-50990439 None:intergenic 45.0%
TCAACACTGACGGTGAAAGT+TGG + chr1_3:50990446-50990465 Msa0123680:CDS 45.0%
AATCGCGTTTGGATTCGATC+CGG + chr1_3:50990657-50990676 Msa0123680:CDS 45.0%
GCTTTCACAAACGCGATTTC+GGG - chr1_3:50990703-50990722 None:intergenic 45.0%
TAAACATTGGAACCGAGCGA+CGG + chr1_3:50990800-50990819 Msa0123680:CDS 45.0%
AAAGACAACCTTGGAATCGG+TGG + chr1_3:50990897-50990916 Msa0123680:CDS 45.0%
GAGATTGTATCCTCCAGTTC+CGG + chr1_3:50991167-50991186 Msa0123680:CDS 45.0%
TCTTTCCCTAAACACACCCT+CGG - chr1_3:50991417-50991436 None:intergenic 45.0%
TGGCGTTCTTACAGATGAAG+AGG + chr1_3:50991439-50991458 Msa0123680:CDS 45.0%
ATGCGCTTCTCGATCTTTAC+TGG - chr1_3:50991570-50991589 None:intergenic 45.0%
!! TAATGAAAATTAAAAAAATA+TGG + chr1_3:50991752-50991771 Msa0123680:intron 5.0%
!!! GGGAATTGTGGAGGGTGTTT+TGG - chr1_3:50990176-50990195 None:intergenic 50.0%
GAATATGTTGGACTACGGCG+GGG - chr1_3:50990348-50990367 None:intergenic 50.0%
! CGATCCCTCTTCGAGTTTCT+AGG + chr1_3:50990412-50990431 Msa0123680:CDS 50.0%
CACTGACGGTGAAAGTTGGA+AGG + chr1_3:50990450-50990469 Msa0123680:CDS 50.0%
AGAGAAGGGAGGAGATACTC+CGG - chr1_3:50990679-50990698 None:intergenic 50.0%
ACGCGATTTCGGGAAGAGAA+GGG - chr1_3:50990693-50990712 None:intergenic 50.0%
AACGCGATTTCGGGAAGAGA+AGG - chr1_3:50990694-50990713 None:intergenic 50.0%
GTCGCTCGGTTCCAATGTTT+AGG - chr1_3:50990801-50990820 None:intergenic 50.0%
GAGTCCTCTTACTTCAGCGA+CGG - chr1_3:50990836-50990855 None:intergenic 50.0%
! CTGCACTCACGTGGTTCTTT+TGG + chr1_3:50991019-50991038 Msa0123680:CDS 50.0%
ATTGTATCCTCCAGTTCCGG+TGG + chr1_3:50991170-50991189 Msa0123680:CDS 50.0%
ATCATCGTAGGCTGCTTCCT+TGG - chr1_3:50991199-50991218 None:intergenic 50.0%
AGGTCGAAACTCAGCCCAAT+CGG - chr1_3:50991310-50991329 None:intergenic 50.0%
GTCGAGCTGACGATGGAAAA+TGG + chr1_3:50991343-50991362 Msa0123680:CDS 50.0%
TGCTTCCAGCGATGGATGAA+GGG + chr1_3:50991493-50991512 Msa0123680:CDS 50.0%
CGGTGGAAGTTGGCTGCAAT+GGG - chr1_3:50990229-50990248 None:intergenic 55.0%
ACGGTGGAAGTTGGCTGCAA+TGG - chr1_3:50990230-50990249 None:intergenic 55.0%
TGGAGGACAAAGGTGGAGGA+AGG - chr1_3:50990289-50990308 None:intergenic 55.0%
ATGACTGAGCAGGAGCCGAA+GGG - chr1_3:50990316-50990335 None:intergenic 55.0%
GTTAGCCGTGATGACTGAGC+AGG - chr1_3:50990326-50990345 None:intergenic 55.0%
CGATTTCGGGAAGAGAAGGG+AGG - chr1_3:50990690-50990709 None:intergenic 55.0%
GGCTTCTTTCAACCGTCGCT+CGG - chr1_3:50990815-50990834 None:intergenic 55.0%
GAAGCCGTCGCTGAAGTAAG+AGG + chr1_3:50990829-50990848 Msa0123680:CDS 55.0%
CAACTTCAGCTGCACTCACG+TGG + chr1_3:50991010-50991029 Msa0123680:CDS 55.0%
CTGAGTTTCGACCTGAGAGG+TGG + chr1_3:50991316-50991335 Msa0123680:CDS 55.0%
TGGTTGAGTCGAGCTGACGA+TGG + chr1_3:50991336-50991355 Msa0123680:CDS 55.0%
CTCGGCCCAGCTTGAAAAAC+CGG - chr1_3:50991399-50991418 None:intergenic 55.0%
!!! GGTTTTTCAAGCTGGGCCGA+GGG + chr1_3:50991398-50991417 Msa0123680:CDS 55.0%
! GTTTAGGGTGCTTCCAGCGA+TGG + chr1_3:50991485-50991504 Msa0123680:CDS 55.0%
GTGCTTCCAGCGATGGATGA+AGG + chr1_3:50991492-50991511 Msa0123680:CDS 55.0%
GCTTCCAGCGATGGATGAAG+GGG + chr1_3:50991494-50991513 Msa0123680:CDS 55.0%
TCAACCCCTTCATCCATCGC+TGG - chr1_3:50991501-50991520 None:intergenic 55.0%
ATGAGTAGAGATGGGGCTCC+TGG + chr1_3:50992141-50992160 Msa0123680:intron 55.0%
! ATGGGGCTCCTGGATGGTTT+TGG + chr1_3:50992151-50992170 Msa0123680:intron 55.0%
TTTGTCCTCCACCGCCCCTT+CGG + chr1_3:50990298-50990317 Msa0123680:CDS 60.0%
TGACTGAGCAGGAGCCGAAG+GGG - chr1_3:50990315-50990334 None:intergenic 60.0%
GATGACTGAGCAGGAGCCGA+AGG - chr1_3:50990317-50990336 None:intergenic 60.0%
CGGCTCCTGCTCAGTCATCA+CGG + chr1_3:50990318-50990337 Msa0123680:CDS 60.0%
GCACACGAATCAGCAGCGAG+AGG + chr1_3:50990734-50990753 Msa0123680:CDS 60.0%
TTGGCATCCACCGGAACTGG+AGG - chr1_3:50991180-50991199 None:intergenic 60.0%
TCCAGTTCCGGTGGATGCCA+AGG + chr1_3:50991179-50991198 Msa0123680:CDS 60.0%
TCCTTGGCATCCACCGGAAC+TGG - chr1_3:50991183-50991202 None:intergenic 60.0%
GCTGCTTCCTTGGCATCCAC+CGG - chr1_3:50991189-50991208 None:intergenic 60.0%
GGGCTGAGTTTCGACCTGAG+AGG + chr1_3:50991313-50991332 Msa0123680:CDS 60.0%
GCTCGACTCAACCACCTCTC+AGG - chr1_3:50991330-50991349 None:intergenic 60.0%
!!! CGGTTTTTCAAGCTGGGCCG+AGG + chr1_3:50991397-50991416 Msa0123680:CDS 60.0%
! CTGGGCCGAGGGTGTGTTTA+GGG + chr1_3:50991409-50991428 Msa0123680:CDS 60.0%
GTAGAGATGGGGCTCCTGGA+TGG + chr1_3:50992145-50992164 Msa0123680:intron 60.0%
GCGGTGGAGGACAAAGGTGG+AGG - chr1_3:50990293-50990312 None:intergenic 65.0%
GAAGGGGCGGTGGAGGACAA+AGG - chr1_3:50990299-50990318 None:intergenic 65.0%
! GCTGGGCCGAGGGTGTGTTT+AGG + chr1_3:50991408-50991427 Msa0123680:CDS 65.0%
GGGGCGGTGGAGGACAAAGG+TGG - chr1_3:50990296-50990315 None:intergenic 70.0%
CTGAGCAGGAGCCGAAGGGG+CGG - chr1_3:50990312-50990331 None:intergenic 70.0%
AGGAGCCGAAGGGGCGGTGG+AGG - chr1_3:50990306-50990325 None:intergenic 75.0%
AGCAGGAGCCGAAGGGGCGG+TGG - chr1_3:50990309-50990328 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50990091 50992591 50990091 ID=Msa0123680;Name=Msa0123680
chr1_3 mRNA 50990091 50992591 50990091 ID=Msa0123680-mRNA-1;Parent=Msa0123680;Name=Msa0123680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.5|1|1|2|0|565
chr1_3 exon 50990091 50991589 50990091 ID=Msa0123680-mRNA-1:exon:15558;Parent=Msa0123680-mRNA-1
chr1_3 exon 50992393 50992591 50992393 ID=Msa0123680-mRNA-1:exon:15559;Parent=Msa0123680-mRNA-1
chr1_3 CDS 50990091 50991589 50990091 ID=Msa0123680-mRNA-1:cds;Parent=Msa0123680-mRNA-1
chr1_3 CDS 50992393 50992591 50992393 ID=Msa0123680-mRNA-1:cds;Parent=Msa0123680-mRNA-1
Gene Sequence

>Msa0123680

ATGGAACCCGAAACATTGGTTTCTTTGTTACTTTTCTCTGCAACTCTCGTTTCGTTCTTATTCTTAGCCACAAAAAAACGATCCAAAACACCCTCCACAATTCCCAACTCTTACCCTATCATTGGTTCTGTGTTTCCCATTGCAGCCAACTTCCACCGTCTCATACAATGGATTTCTGACATCCTTCAAACTATACCTTCCTCCACCTTTGTCCTCCACCGCCCCTTCGGCTCCTGCTCAGTCATCACGGCTAACCCCGCCGTAGTCCAACATATTCTCAAAACCAACTTCCCTTGCTACAACAAAGGTCCTACATTTCATCGATCCCTCTTCGAGTTTCTAGGTAACGGTATCTTCAACACTGACGGTGAAAGTTGGAAGGTTCAACGACAAATCTCCAGCCATGAATTCAATACTAAATCCCTCCGTAAATTCGTTGAAACAGTGGTGGATGTTGAACTCAACGATCGTTTGCTTCCTATTCTCCATGAAGCTTCCAAAAACCAAATGATTCTCCCTGATTTTCAAGATATTCTCCAACGTTTTACGTTTGATAATATTTGCATAATCGCGTTTGGATTCGATCCGGAGTATCTCCTCCCTTCTCTTCCCGAAATCGCGTTTGTGAAAGCTTTTGATGACAGCACACGAATCAGCAGCGAGAGGATAAACGCTGCTATTCCATTTCTATGGAAAGTGAAAAAATTCCTAAACATTGGAACCGAGCGACGGTTGAAAGAAGCCGTCGCTGAAGTAAGAGGACTCGCCACAAAAATTGTTAGGGAAAAGAAAAAAGAGCTTAAAGAAAAGACAACCTTGGAATCGGTGGATATTTTGTCGCGATTTTTAAGTTCCGGTCATTCAGATGAATCTTTTGTAGTTGATATTGTGATAAGCTTTATTCTTGCTGGGAGAGATACAACTTCAGCTGCACTCACGTGGTTCTTTTGGTTAATCTCTAAGCATAGTCATGTAGAGAATGAGATTCTTAAAGAGATTACTAGAAAATCAATGATAGTTAGTTACGATGAGGTGAAGGATATGGTTTACACTCATGCATCGTTATGCGAGAGTATGAGATTGTATCCTCCAGTTCCGGTGGATGCCAAGGAAGCAGCCTACGATGATGTTTTGCCAGATGGAACATTAGTGAAGAAAGGGTGGATAGTTGCGTATCATGTATATGCTATGGGAAGGTCTGAGAAAATATGGGGATCCGATTGGGCTGAGTTTCGACCTGAGAGGTGGTTGAGTCGAGCTGACGATGGAAAATGGAGCTTTGTTGGAATGGATCCTTATACTTATCCGGTTTTTCAAGCTGGGCCGAGGGTGTGTTTAGGGAAAGAAATGGCGTTCTTACAGATGAAGAGGTTGGTTATTGGCATTATGAGGGAGTTTAGGGTGCTTCCAGCGATGGATGAAGGGGTTGAACCAGAGTTTGATTCACACCTTACTTCAATAATGAAAGGTGGCTTTCCAGTAAAGATCGAGAAGCGCATGTTAGCTCAAATCTTACCTGATATTATATCAAAAGATCAAAGAAGATTCATGAAAGGGAGACAAATCAAGGATTACATTTGTCTTACTTCAGAAGCCATAAACATGTTGCGTAACAAGTCTTATGGTGGAAATCTAGCTATCGAAATTGGCATAGGAAAAGCATTTGATATTATTGACTGGAGCTTTTTGCTAATATAA

Protein sequence

>Msa0123680

MEPETLVSLLLFSATLVSFLFLATKKRSKTPSTIPNSYPIIGSVFPIAANFHRLIQWISDILQTIPSSTFVLHRPFGSCSVITANPAVVQHILKTNFPCYNKGPTFHRSLFEFLGNGIFNTDGESWKVQRQISSHEFNTKSLRKFVETVVDVELNDRLLPILHEASKNQMILPDFQDILQRFTFDNICIIAFGFDPEYLLPSLPEIAFVKAFDDSTRISSERINAAIPFLWKVKKFLNIGTERRLKEAVAEVRGLATKIVREKKKELKEKTTLESVDILSRFLSSGHSDESFVVDIVISFILAGRDTTSAALTWFFWLISKHSHVENEILKEITRKSMIVSYDEVKDMVYTHASLCESMRLYPPVPVDAKEAAYDDVLPDGTLVKKGWIVAYHVYAMGRSEKIWGSDWAEFRPERWLSRADDGKWSFVGMDPYTYPVFQAGPRVCLGKEMAFLQMKRLVIGIMREFRVLPAMDEGVEPEFDSHLTSIMKGGFPVKIEKRMLAQILPDIISKDQRRFMKGRQIKDYICLTSEAINMLRNKSYGGNLAIEIGIGKAFDIIDWSFLLI*