AlfalfaGEDB | MS.gene28052

M. sativa cultivar XinJiangDaYe / MS.gene28052

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF13419.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28052.t1	XP_013446778.1	99.2	129	1	0	1	129	186	314	5.70E-62	247.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28052.t1	Q680K2	83.7	129	21	0	1	129	184	312	4.5e-55	216.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28052.t1	A0A072U4Q2	99.2	129	1	0	1	129	186	314	4.1e-62	247.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene28052	0.884796	1.41E-71	-1.69E-46
MS.gene049171	MS.gene28052	0.919209	5.99E-87	-1.69E-46
MS.gene049173	MS.gene28052	0.880584	4.87E-70	-1.69E-46
MS.gene049217	MS.gene28052	0.927119	1.83E-91	-1.69E-46
MS.gene049222	MS.gene28052	0.927734	7.77E-92	-1.69E-46
MS.gene049232	MS.gene28052	0.873652	1.25E-67	-1.69E-46
MS.gene049281	MS.gene28052	-0.806926	6.49E-50	-1.69E-46
MS.gene049285	MS.gene28052	0.932119	1.37E-94	-1.69E-46
MS.gene049320	MS.gene28052	0.918235	2.00E-86	-1.69E-46
MS.gene049369	MS.gene28052	0.816762	4.68E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28052.t1	MTR_8g090025	99.225	129	1	0	1	129	186	314	2.37e-86	259
MS.gene28052.t1	MTR_8g090025	99.145	117	1	0	1	117	186	302	1.50e-77	237
MS.gene28052.t1	MTR_3g075230	45.946	111	59	1	1	111	188	297	4.08e-21	90.5
MS.gene28052.t1	MTR_0937s0020	34.483	116	76	0	1	116	633	748	4.13e-13	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28052.t1	AT4G39970	83.721	129	21	0	1	129	184	312	5.61e-72	223
MS.gene28052.t1	AT3G48420	46.847	111	58	1	1	111	184	293	2.42e-22	94.0

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Find 75 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATCGTACAGCATCTC+TGG	0.438342	4.4:+10941639	None:intergenic
AACGGCCCAGATGGCTCCAT+GGG	0.451650	4.4:-10937746	MS.gene28052:CDS
AAGATATGGTAAATCTAGTG+CGG	0.661983	4.4:-10938841	MS.gene28052:CDS
AAGCAGTCACATATATTGAC+GGG	0.575556	4.4:+10941138	None:intergenic
AAGGACAGCAGCCCAGGTAA+AGG	0.526722	4.4:+10937818	None:intergenic
AATATATGTGACTGCTTCCC+AGG	0.410556	4.4:-10941132	MS.gene28052:intron
AATGACCCCATGGAGCCATC+TGG	0.414449	4.4:+10937740	None:intergenic
ACAAGCAGGGATGTCTTGTG+TGG	0.683817	4.4:-10940182	MS.gene28052:CDS
ACCCTGACTTGAGTAACGTA+AGG	0.601515	4.4:-10939992	MS.gene28052:intron
ACCTGGGCTGCTGTCCTTGG+AGG	0.419934	4.4:-10937813	MS.gene28052:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAACTTCAGACTTCAA+TGG	+	chr4.4:10939038-10939057	None:intergenic	30.0%
AAGATATGGTAAATCTAGTG+CGG	-	chr4.4:10940502-10940521	MS.gene28052:intron	30.0%
AATTCTTGAAGACATGTTTG+CGG	+	chr4.4:10941416-10941435	None:intergenic	30.0%
ACCAAACCAATCAAGTATAA+CGG	+	chr4.4:10937801-10937820	None:intergenic	30.0%
ATCAAGTATAACGGTAAACA+AGG	+	chr4.4:10937792-10937811	None:intergenic	30.0%
ATGATTGTAGTTTCCTTGTT+TGG	-	chr4.4:10940636-10940655	MS.gene28052:intron	30.0%
ATTGTCAACAGAACCATTAT+TGG	+	chr4.4:10940457-10940476	None:intergenic	30.0%
ATTTGATATTGAAATTCGGG+TGG	-	chr4.4:10939252-10939271	MS.gene28052:intron	30.0%
CATTCTTAAGAATCTTAAGG+AGG	+	chr4.4:10939811-10939830	None:intergenic	30.0%
CTAGAATAGTTTCAGTTATC+AGG	-	chr4.4:10940111-10940130	MS.gene28052:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	10937694	10941671	10937694	ID=MS.gene28052
chr4.4	mRNA	10937694	10941671	10937694	ID=MS.gene28052.t1;Parent=MS.gene28052
chr4.4	exon	10941651	10941671	10941651	ID=MS.gene28052.t1.exon1;Parent=MS.gene28052.t1
chr4.4	CDS	10941651	10941671	10941651	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10941433	10941507	10941433	ID=MS.gene28052.t1.exon2;Parent=MS.gene28052.t1
chr4.4	CDS	10941433	10941507	10941433	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10941309	10941342	10941309	ID=MS.gene28052.t1.exon3;Parent=MS.gene28052.t1
chr4.4	CDS	10941309	10941342	10941309	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10941133	10941188	10941133	ID=MS.gene28052.t1.exon4;Parent=MS.gene28052.t1
chr4.4	CDS	10941133	10941188	10941133	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10940971	10941030	10940971	ID=MS.gene28052.t1.exon5;Parent=MS.gene28052.t1
chr4.4	CDS	10940971	10941030	10940971	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10940153	10940212	10940153	ID=MS.gene28052.t1.exon6;Parent=MS.gene28052.t1
chr4.4	CDS	10940153	10940212	10940153	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10939993	10940039	10939993	ID=MS.gene28052.t1.exon7;Parent=MS.gene28052.t1
chr4.4	CDS	10939993	10940039	10939993	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10939870	10939903	10939870	ID=MS.gene28052.t1.exon8;Parent=MS.gene28052.t1
chr4.4	CDS	10939870	10939903	10939870	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10938955	10939046	10938955	ID=MS.gene28052.t1.exon9;Parent=MS.gene28052.t1
chr4.4	CDS	10938955	10939046	10938955	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10938765	10938860	10938765	ID=MS.gene28052.t1.exon10;Parent=MS.gene28052.t1
chr4.4	CDS	10938765	10938860	10938765	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1
chr4.4	exon	10937694	10937862	10937694	ID=MS.gene28052.t1.exon11;Parent=MS.gene28052.t1
chr4.4	CDS	10937694	10937862	10937694	ID=cds.MS.gene28052.t1;Parent=MS.gene28052.t1

Gene Sequence

>MS.gene28052

ATGGATGAAGCCAGAGATGCTGTACGATTATTTACCGGATATATACTTTTGTAATATTTTGATCTATATTTTTTGTTTTGTTGCACGAAGTATAACCTTGTTTACCGTTATACTTGATTGGTTTGGTTCGGATCTTATAATTTTTTGCTCAATTGCTGATGCAGGGGAAAAAGCTAGCTGTTTGCTCTGCTGCAACTAAAAGTTCAGTTATTCTTTGTCTTGAAAACCTTATTGGAATTGTAAGCCTACTTTAATACTTGTTCTCTCTATTGGGAGTAGGAGTTTTCTTTATGAATTTGCATTCAAGCATCTTATTTTTTCTACTGCAGGAGCGCTTTCAAAGCCTTGATTGCTTCCTTGCTGGTATATGCACATCACTTTAATATCTAGTATTGTTTGCATAACTTTGAAACATATATGTTTCCTGCTCATGAGTTTAGGACCAAGTTTAACCTTATCTATCAATTTTATTTAAACTTTAAGGTGATGATGTGAAGGAAAAGAAGCCCGACCCGTCAATATATGTGACTGCTTCCCAGGTTTTAATATGACAATACCATCAAGAACTTTGAAAAGTGGAATTTTGAGGGTTTTTTTGTGTGCCAAATTACCAAGTATAATTTATATATTGTGCATTGCAGAAGTTGGGTGTATCAGAGAAAAATTGCTTGGTGGTAGAGGATAGTGTTATTGGTTTACAGGTAAATCTTCTCATATTATGAATACTATATATATGTCCCCAATTAATCTCTTTATATGTTGTGAAAAAGGAAAATATGAAAAAGATAACTGTTAGCTTGTGTTAGAAAGTTAGACGGCAAGGAAAACTCTTGATTTGTTGTTTGATATAGTAGTTGGCTTAAATAAATGAAATTTCTATTCACAAATCTCTATTTGGTTCCTTTCTACCTAAATTGCATTTAATCATGTTCAGAATACTGTAATCCTGACTTTGTTAACTGTGGTTAAGCGCATTCATCATCCAGGCTTGAAGCGTGAATCGTTAGACTTGGATGGTTTCTGCATTGGAATTTAGAAAGAAAGAAATGCTATACTACTCATGAGTTTTATGTCCCACATTGGTTAGAAGAAATAACAAGTACTGAAGCTTTGCTATAAAATAAGAGTTCATTCACATAACAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCAATGGTCCACACGATATTAAATTTATTTATTGAGGGGGAGAGTCCACCACAGTAGCTTGCTATTGGGCCTCTCTTGCGTCGCCTTTGCGTTGCACTATAGCAATGGCCTGGCGCACCCCACCATTGAAGTCTGAAGTTTTGTTTTTTAATTCTTTTAATAAGTTATTTTTTTTCTGTCCTTATTATCTTGCTAAACTGTATGTTATAAACTAACAACTAAACTAATAAATTTCTACAGGCAGCAACACAAGCAGGGATGTCTTGTGTGGTTACCTACACATCTTCCACCGCTGAGCAGGTGAGGACCCTCAAATGAATTTAACCAGAAAATACTACGATTTGATATTGAAATTCGGGTGGAAAAACTGGCTGCATGATGACATAACTGGTTTTGTCTTTGATCGAATGTAGGATTTCAAAGAAGCCATAGCAATCTACCCTGACTTGAGTAACGTAAGGTATAATCATAATGCATTGCTGAAAACTGTTTCTATTAGGTGTTCTCAATTCAAACACAGCTACTAATATTTTTTGAACATTTATGCAGCTTGAAAGATTTGGAGTTGCTACTTCAAGATGTTGTAGCTGCTAAATAGAATTATTGTTTATGACATGGAAATGTTATTATTATTAGTTACCTTGAATTGGTTTCTGTGAGTAAAGCCGGTCGAAAGTTTGAGGTTTATCACAAGGCTAAGATCCTTTGTTTTTCTTTTCTTTTATTTTCTTTCTTTTACATGTTTTTATGTGGATTCAGTTCATTGCAAAATGTAATAAAGGTCATAATCCATTGTTTGTATTTTGAATGTCTCTCATTTTCATGGTTCATCAAGTTCAGTGCATGAAAGTTGAGATGTTTTTATTTTTAATATTTTCAAATGATTAGTTTCTTTCCTCCTTAAGATTCTTAAGAATGAATATGACCAGCAATGAACTCTATTTCTTCAGTCAAATCATCTATTGAAATATCTTGAGGCCTTTTTTTTTTTTTTTTTTTAAGATCTTGAGGCCTATTTAAGCCGTAAAATACATATTTTTAGGCTATTAACTGATTTAAAATATACTTAAGAACCTCAGATTACATTTTCATCAATGAAAAACTAACAAGACTAATTGTATATCATTCAAAGAGCAAATTTAATTATTTACTCATCATTTCATTTTGAATGGAAGCCGTCCTCAATGCTGTAAATTTGCTAGAATAGTTTCAGTTATCAGGATATAATTTCCAGTACAAAACAATATAAATAAAAACAATTTTAATCCAAATTCATTGAATTTACCATATCTATATCATCCTGATTTAACATGTAGTAAGTAGAGGTGAAAACATTACGACAAATATTAGTTTTGTAAGAAAAGCTGCTAATAAAAGTTCCAACTCTGGTTGTGGTGCTGATTAAGGCTGAGGAGATGGTGGTGTCAGGTCCTCCGGAGGTTGTGGCTGCGGGAATGAGCATTGTACTCACTGCAATAAACTGGTTCACACCAATGATGTTTGTTTCATGAAGCATGGTTGTCCATCTCATTGCGGAAAGACCAATAATGGTTCTGTTGACAATTGTACCACTAGTACCATTGAAAATGAAGATATGGTAAATCTAGTGCGGCTGAGGGATCTATTGGAGATGGTAACAGTTCAGGATTTACACCAGAACAGCAAAATGATTTTTGGACTCTTACAAGGTTCTTCACTGCTCCATCTCATAATATCATTCATTATGATTGTAGTTTCCTTGTTTGGCTATTTAACTTGCAAATTCGAGACTACAAAAATCTGAGAACTAGATATTTTTCTTGATCCTTTTTCAATTTATTTTGAGTGAGTAAATCAATTTTAGCACCTATTAAAGTTCCAACACTAGTATGCTTATGTTGACCTTGTCGATTGTTGCCTCACTTAGACTATTGTGTCAGATTGAAGAATGAATTGTCAAACTTGGATATGGTTGTTGCATTGAACTTTAGAAAGAAAGAAATGGTGTAGTACTCATGAATTCTATGTCCCACATTGGTTAGATGAAACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCAATGGTCCACATGATATTAAATTTATTTTTTGAGAGGGAGAGTCCACCACAATAGCTTGCTATTGGGTCTCTCAAGTGTCGCCTTTGTGTTGCACTATTGCATTGGCCTGGCGCACCCCACCAATTAAGTTATAATTGTTTTTAATTTCTTTTCTTGGCCAAGTACTTTTTTTTGGTTTTAACTTATGATGTGGTTTTTTAACCAGTATCTCAAGAAGTCTAATAATGTAAAATTTCAGAAGCTGAGACTACAATGATTATTTGGATTGCATGATAGTTTTGGACTTGGGACTCTTGTAATGTTACTTACTAAGCTGAACTTGGCTTTTTTGTGTTGGAGGAACTGCAATCCTGATTATGAATTGTATACCTACTTTTACACTAAAATGAAGCATTTATTTCCGCAAACATGTCTTCAAGAATTTATCCAAGACCCACAATCTGAGTCCCATCTTAGCAATGCTCCTGAGTTAGTAGTATTTATAGTGTAGGTTTAGGGTTTTGGTCCTTGAACCTTTACCTGGGCTGCTGTCCTTGGAGGACAGCTGTAAGCAGATTGTGAGAGGACACCTTGGATCCGGACTGAACGGCCCAGATGGCTCCATGGGGTCATTATTCCAGTGCAGTCGAGGGATAATTCCATCTCAGGGTCCTTCATGA

Protein sequence

>MS.gene28052.t1

MDEARDAGKKLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYVTASQKLGVSEKNCLVVEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIYPDLSNVSLKDLELLLQDVAEEMVVSGPPEVVAAGMSIVLTAINWFTPMIYGKSSAAEGSIGDGNSSGFTPEQQNDFWTLTRFRVLVLEPLPGLLSLEDSCKQIVRGHLGSGLNGPDGSMGSLFQCSRGIIPSQGPS