AlfalfaGEDB | MS.gene74579

M. sativa cultivar XinJiangDaYe / MS.gene74579

KEGG: K02694
GO: GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009522 GO:0009538 GO:0009987 GO:0015979 GO:0032991 GO:0044237 GO:0098796
PFAM: PF02507.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74579.t1	XP_013462992.1	99.6	224	1	0	1	224	1	224	5.00E-121	443.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74579.t1	P46486	76.3	228	46	3	1	220	1	228	6.6e-90	331.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74579.t1	I3SN70	99.6	224	1	0	1	224	1	224	3.6e-121	443.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene74579	0.806196	9.25E-50	-1.69E-46
MS.gene049171	MS.gene74579	0.919027	7.51E-87	-1.69E-46
MS.gene049173	MS.gene74579	0.867271	1.55E-65	-1.69E-46
MS.gene049217	MS.gene74579	0.911841	3.85E-83	-1.69E-46
MS.gene049222	MS.gene74579	0.915681	4.41E-85	-1.69E-46
MS.gene049232	MS.gene74579	0.893246	7.52E-75	-1.69E-46
MS.gene049259	MS.gene74579	-0.810542	1.09E-50	-1.69E-46
MS.gene049281	MS.gene74579	-0.821839	3.26E-53	-1.69E-46
MS.gene049285	MS.gene74579	0.962323	9.66E-121	-1.69E-46
MS.gene049320	MS.gene74579	0.965249	2.32E-124	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74579.t1	MTR_2g029370	99.554	224	1	0	1	224	1	224	1.07e-165	456

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74579.t1	AT1G31330	74.107	224	55	2	1	224	1	221	6.00e-119	337

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Find 52 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATCTAGAAGCAAG+TGG	0.593997	2.3:-60303813	None:intergenic
AAAAGAAACTTAGACATCCT+TGG	0.511183	2.3:-60303895	None:intergenic
AAAAGAAGGTTTGATAACTA+TGG	0.369761	2.3:+60303591	MS.gene74579:CDS
AACTCTCTATAAGCAGCAAT+AGG	0.489675	2.3:-60303852	None:intergenic
AATGGTGATCAAAGACATTG+GGG	0.721922	2.3:+60303663	MS.gene74579:CDS
ATAATAATCTCTTTCTGTGT+AGG	0.434953	2.3:-60303783	None:intergenic
ATAGTTATCAAACCTTCTTT+TGG	0.372376	2.3:-60303589	None:intergenic
ATATTGCTGGTTGGATTGGG+TGG	0.459491	2.3:+60303718	MS.gene74579:CDS
ATCCCTCAAGCTTTACGCTC+CGG	0.532519	2.3:+60303524	MS.gene74579:CDS
ATGATGTTGGTTGAGAGTTT+TGG	0.311230	2.3:-60303303	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAATCTAGAAGCAAG+TGG	-	chr2.3:60303816-60303835	None:intergenic	35.0%
AACTCTCTATAAGCAGCAAT+AGG	-	chr2.3:60303855-60303874	None:intergenic	35.0%
AATGGTGATCAAAGACATTG+GGG	+	chr2.3:60303663-60303682	MS.gene74579:CDS	35.0%
CAGTTGAGAAAACCAAAAGA+AGG	+	chr2.3:60303577-60303596	MS.gene74579:CDS	35.0%
GAATGGTGATCAAAGACATT+GGG	+	chr2.3:60303662-60303681	MS.gene74579:CDS	35.0%
GCTTATAGAGAGTTGTTGAA+TGG	+	chr2.3:60303861-60303880	MS.gene74579:CDS	35.0%
TCACCATTCACTATCAAATG+TGG	-	chr2.3:60303651-60303670	None:intergenic	35.0%
TGAATGGTGATCAAAGACAT+TGG	+	chr2.3:60303661-60303680	MS.gene74579:CDS	35.0%
TGTTCCACTTGCTTCTAGAT+TGG	+	chr2.3:60303809-60303828	MS.gene74579:CDS	40.0%
TTGATTCTCTGCATGGTGTT+AGG	-	chr2.3:60303458-60303477	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	60303234	60303908	60303234	ID=MS.gene74579
chr2.3	mRNA	60303234	60303908	60303234	ID=MS.gene74579.t1;Parent=MS.gene74579
chr2.3	exon	60303234	60303908	60303234	ID=MS.gene74579.t1.exon1;Parent=MS.gene74579.t1
chr2.3	CDS	60303234	60303908	60303234	ID=cds.MS.gene74579.t1;Parent=MS.gene74579.t1

Gene Sequence

>MS.gene74579

ATGTCTCTAACAATTCCAACTAACCTCTCCAAACCCACCTCAACCCTAAGGCCAAAACTACCTCAAAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAGGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCTGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTGTCGCCGACATCTCCGGCCTAACACCATGCAGAGAATCAAAACAATTCGCCAAACGTGAGAAACAATCAATCAAAAAGCTTGAATCATCCCTCAAGCTTTACGCTCCGGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAAAGAAGGTTTGATAACTATGGAAAACAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGTGAGTTTATCACACCAGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGTGGGTTGGCAGGAGTTACTTGATTGCTATTCGTGACGAGAAGAAACCTACACAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTATAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATGTCTAA

Protein sequence

>MS.gene74579.t1

MSLTIPTNLSKPTSTLRPKLPQKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAVADISGLTPCRESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDV