AlfalfaGEDB | MS.gene45730

M. sativa cultivar XinJiangDaYe / MS.gene45730

KEGG: -
GO: -
PFAM: PF13460.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45730.t1	XP_024637320.1	90.2	654	46	2	1	650	1	640	1.30E-267	932.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45730.t1	Q8SKU2	71.4	553	121	6	1	541	3	530	4.3e-198	692.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45730.t1	A0A072UX22	89.8	655	48	3	1	650	1	641	7.6e-265	922.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene45730	0.831065	2.06E-55	-1.69E-46
MS.gene049171	MS.gene45730	0.929372	7.64E-93	-1.69E-46
MS.gene049173	MS.gene45730	0.881585	2.12E-70	-1.69E-46
MS.gene049217	MS.gene45730	0.912451	1.92E-83	-1.69E-46
MS.gene049222	MS.gene45730	0.940212	3.43E-100	-1.69E-46
MS.gene049232	MS.gene45730	0.908262	2.07E-81	-1.69E-46
MS.gene049281	MS.gene45730	-0.808139	3.59E-50	-1.69E-46
MS.gene049285	MS.gene45730	0.972642	4.23E-135	-1.69E-46
MS.gene049320	MS.gene45730	0.975604	2.93E-140	-1.69E-46
MS.gene049369	MS.gene45730	0.803464	3.44E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45730.t1	MTR_4g068970	93.893	655	21	3	1	650	1	641	0.0	1157
MS.gene45730.t1	MTR_4g115730	34.824	313	162	11	22	322	7	289	8.29e-34	131
MS.gene45730.t1	MTR_4g115730	36.260	262	128	10	76	322	12	249	1.48e-31	123
MS.gene45730.t1	MTR_4g064750	26.812	276	171	9	62	323	87	345	2.32e-17	86.3
MS.gene45730.t1	MTR_8g010700	34.911	169	83	8	97	258	93	241	2.33e-15	78.2
MS.gene45730.t1	MTR_4g021815	47.297	74	38	1	179	252	107	179	1.38e-13	71.6
MS.gene45730.t1	MTR_7g062140	37.500	96	56	2	179	274	181	272	2.33e-12	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45730.t1	AT3G18890	50.587	682	235	21	9	646	13	636	0.0	540
MS.gene45730.t1	AT2G34460	36.264	273	140	10	63	325	32	280	1.95e-32	127
MS.gene45730.t1	AT3G46780	29.520	271	151	10	75	323	89	341	7.49e-14	75.1
MS.gene45730.t1	AT4G31530	30.088	226	121	11	97	304	93	299	1.95e-13	72.4
MS.gene45730.t1	AT4G31530	30.088	226	121	11	97	304	93	299	2.11e-13	72.4
MS.gene45730.t1	AT2G37660	40.860	93	50	3	172	261	168	258	7.62e-13	70.5
MS.gene45730.t1	AT5G02240	41.975	81	32	2	179	252	105	177	5.20e-12	67.0

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Find 193 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGGCTTACGCTGCAAA+AGG	0.509111	4.4:-38569956	None:intergenic
AAATACATCTTCTGTGGGTT+CGG	0.438355	4.4:+38571322	MS.gene45730:CDS
AAATACTAAATTATCATCCT+TGG	0.436092	4.4:-38567662	None:intergenic
AAATCAACTTACATTGCATA+AGG	0.428183	4.4:-38570355	None:intergenic
AACAACTTCCTCAAAAGGGA+AGG	0.609863	4.4:+38569922	MS.gene45730:CDS
AACAGAACAACCAGAACCAG+TGG	0.608935	4.4:+38569586	MS.gene45730:CDS
AACAGAACAACCGAAACCAG+TGG	0.657563	4.4:+38569640	MS.gene45730:CDS
AACAGATTAAATCAGCATTA+GGG	0.420765	4.4:+38568493	MS.gene45730:CDS
AACTGAAGATACTTTGTTTG+GGG	0.562205	4.4:+38569111	MS.gene45730:CDS
AAGCTTGATGGTACAAGTGG+AGG	0.568328	4.4:+38568341	MS.gene45730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCGTACATCAATTAAC+AGG	-	chr4.4:38569468-38569487	None:intergenic	30.0%
AACAGGAATGTTAAACTACT+AGG	-	chr4.4:38569451-38569470	None:intergenic	30.0%
AAGTGAGTGAATAAGTCTTA+TGG	+	chr4.4:38570518-38570537	MS.gene45730:intron	30.0%
AATGCACATATCTTCATTCA+AGG	+	chr4.4:38567604-38567623	MS.gene45730:intron	30.0%
ACATTGATGTAGGATTAACA+TGG	-	chr4.4:38570839-38570858	None:intergenic	30.0%
ACCTTATCGAATAGATTACA+TGG	+	chr4.4:38568578-38568597	MS.gene45730:CDS	30.0%
ATCACCACAAAATTAGAAAG+CGG	-	chr4.4:38569975-38569994	None:intergenic	30.0%
ATTATAGAAGAGAGAAAGAG+AGG	+	chr4.4:38571655-38571674	MS.gene45730:intron	30.0%
ATTGATGAATGTACTAGGTT+AGG	+	chr4.4:38570543-38570562	MS.gene45730:intron	30.0%
CAAATTGAAGAGGTTTAGAT+GGG	-	chr4.4:38570030-38570049	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	38567353	38571867	38567353	ID=MS.gene45730
chr4.4	mRNA	38567353	38571867	38567353	ID=MS.gene45730.t1;Parent=MS.gene45730
chr4.4	exon	38567353	38567536	38567353	ID=MS.gene45730.t1.exon1;Parent=MS.gene45730.t1
chr4.4	CDS	38567353	38567536	38567353	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38567626	38567725	38567626	ID=MS.gene45730.t1.exon2;Parent=MS.gene45730.t1
chr4.4	CDS	38567626	38567725	38567626	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38567821	38567893	38567821	ID=MS.gene45730.t1.exon3;Parent=MS.gene45730.t1
chr4.4	CDS	38567821	38567893	38567821	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38568326	38568371	38568326	ID=MS.gene45730.t1.exon4;Parent=MS.gene45730.t1
chr4.4	CDS	38568326	38568371	38568326	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38568448	38568624	38568448	ID=MS.gene45730.t1.exon5;Parent=MS.gene45730.t1
chr4.4	CDS	38568448	38568624	38568448	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38568721	38568802	38568721	ID=MS.gene45730.t1.exon6;Parent=MS.gene45730.t1
chr4.4	CDS	38568721	38568802	38568721	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38568881	38568953	38568881	ID=MS.gene45730.t1.exon7;Parent=MS.gene45730.t1
chr4.4	CDS	38568881	38568953	38568881	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38569043	38569153	38569043	ID=MS.gene45730.t1.exon8;Parent=MS.gene45730.t1
chr4.4	CDS	38569043	38569153	38569043	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38569241	38569393	38569241	ID=MS.gene45730.t1.exon9;Parent=MS.gene45730.t1
chr4.4	CDS	38569241	38569393	38569241	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38569497	38569690	38569497	ID=MS.gene45730.t1.exon10;Parent=MS.gene45730.t1
chr4.4	CDS	38569497	38569690	38569497	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38569778	38569966	38569778	ID=MS.gene45730.t1.exon11;Parent=MS.gene45730.t1
chr4.4	CDS	38569778	38569966	38569778	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38570165	38570365	38570165	ID=MS.gene45730.t1.exon12;Parent=MS.gene45730.t1
chr4.4	CDS	38570165	38570365	38570165	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38571277	38571591	38571277	ID=MS.gene45730.t1.exon13;Parent=MS.gene45730.t1
chr4.4	CDS	38571277	38571591	38571277	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1
chr4.4	exon	38571813	38571867	38571813	ID=MS.gene45730.t1.exon14;Parent=MS.gene45730.t1
chr4.4	CDS	38571813	38571867	38571813	ID=cds.MS.gene45730.t1;Parent=MS.gene45730.t1

Gene Sequence

>MS.gene45730

ATGGAGGCTTTCTCACTCACCTCAACTACCATTCCCTCCTCTCTAACACGTAGAGAGGCTGCAGCTGTTAAACCTTCTGGCCATGTCAACCTTTCCAAATACTCACATTTCATAAACTACCCTTTCACCACAACACCTTCCAGGAGTAGAATCCGTAGCAATATCATAAGAGCTCAAGTTTCAGGTGATAGGATTTCTTTTTATTATTTTCGTGTGTATGTGTGTGTGATTTTGACTGTATGAATGTTAAAAATGCACATATCTTCATTCAAGGTTCAACAAAATCTAGTCCTGCTGAGAAGAAAGATTCCAAGGATGATAATTTAGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTCAGGTACATTTGTTTCTCCACCACAGTACTGAACTTAATTCACCTTTTGAGATAGTAATTTTCTTTACAAAATGCTGAGCTGTGATAGTTTCATTCAGGGAGCTTATAAAGCTTGGTTTTAAAGTCAGGGCTGGAGTAAGGAGTGCTCAGAGAGCTGGTGCATTGGTTCAGGTAATAGAAAGGTTACTCTTGGGTGGTGATTTAACTAATGGCATATTTGGATTGACTTATTTGAGTTTATCTACTGGCATGAGCACTTGTGAGATTGTTTACGAGAGCGTATGGAAATAGCTTATGACATGTCCATAAGCTGTTTTCATCTTATTCTCGTACGCTCATCGGAATAAACCAACAACTTGGCATAAGCTCAGGATAGCTTATCAAAACATCATATAGCTTATATGAAAACAGTTTGACCTTATTTTATTTGTTATAGAAATAGCTTATACGTAATCACTTACTATATGATAAACGTGCATGCTATAAACACTTGATTAAGTGGTTTGTCTAAACAAGGCCGAAGTGACATGACTAATAGTTATAATCAGTTTCTTAAAATGGATAATTGGATATACATTAAAGATATGAATATACCATGTGCAGAGTGTTAAACAATTGAAGCTTGATGGTACAAGTGGAGGGAGTGAAGGTAAGTCAAGAAAGTTTTTCTCATTGACAAAATGTTGCTGTGTTGGATAACAGAATGTTTTTGGTTTTTAGCCCAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAGAACAGATTAAATCAGCATTAGGGAATGCATCAACTGTAATATGCACCATTGGTGCCAGTGAGAAGGAAATTTTTGACATTACCGGACCTTATCGAATAGATTACATGGCCACCAAAAACCTAGTTGATGCTGGTAACAAGAGCTTTCATTATGGTTATGTTTTAATGCTATTTGTGTTAGGCTTAAATGTTGAAAACAAATGTTTTTGTTCATTGTGTCATGATGCAGCATCTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCACTGGGAACAAACAAATTTGGTTTTCCTGCAGCTATTCTCAAGTGAGTATGAAATTAAGCTTACTCATCATGTTCACATCATAAATTAGTTCAACTGATTTCTTAGTTCTATTTTTGTAGTTTATTTTGGGGAGTCTTGTGTTGGAAAAGGAAGGCAGAGGAAGCATTGCTAGCAAGTGGAATTCCATACACAGTAAGTCATTGTGATCCTAATTACACCGAAGCGCAGCGCAGGGTCCTAATTATCTTATTTTTATGTTATTGTCATGACACTCTTTTCAGATAGTGAGACCTGGAGGCATGGAGAGGCCTACTGATGCTTACAAGGAAACTCATAATGTAACCCTATCAACTGAAGATACTTTGTTTGGGGGACAAGTGTCAAACCTTCAGGTACTTATCATGTAAAACGTTTTCATGTACGTAACTATCGATTTAAGATATATAGATATATGGAAGTTGATAACTCTCTCAATTCAGGTTGCTGAACTCATGGCAGCCATGGCTAAGAATCCGGAACTTTCATATTGTAAAATAGTGGAGGTCATTGCCGAGACAACTGCGCCATTGACACCTGCAGAAAAACTTCTTGCAAAGATACCTTCTCAACGCCCTTACATTCCTTCGCCCAAGGTAAGTACTTCCGTATATAATACATTTCGTGACGTGTATTTTGAACTCCTCCTGCCTAGTAGTTTAACATTCCTGTTAATTGATGTACGGTTTTCTTTGGAAGGTACAGGAACCAGATACTGCAGCTGTCAGTAATCCAGCTCCCTCGGCTAATGTCACGGAAGCAGTACCTAGTATTTCCCCTCAGAAAGAAACAGAACAACCAGAACCAGTGGCAGAAGTGCCTAGCATTACTCCTCAGAAAGAAACAGAACAACCGAAACCAGTGGCAAAACAGCCGCTTTCTCCTTATACTGCGTAAGCCAGATTGCTAATATTTGTTGACAGTCAATTTTTATGTGGACTATGGAGACCAAATAACTAAGTTGGTATATACATTTTCAGTTATGATGATTTAAAACCACCGTCATCCCCTTCTCCAGTCAAGCCTAGTGACAAGAAACAGATAAATATCAGTGATGCAGTGCCAACACCTAGTTCTTCAGATGCTCCAAGTAACATTCCAGAAATAGATGTCATTTCTCAGACAACAACTTCCTCAAAAGGGAAGGAGTCTCTTTCTCCTTTTGCAGCGTAAGCCGCTTTCTAATTTTGTGGTGATATCATATGTTAGTACACATTATCATCTAATTTCCCATCTAAACCTCTTCAATTTGGCAGCTATGAGGATTTAAAACCTGCAGATACCTTGTTATGAACTACTTTAGCACTTTTATCCGTGGTATCCTAAATTTGTGGTTTGTTTTCCTTGTGTATTTTATATACCTGCAGATATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAACTACATCAATATCCACATCTTCTGTGGGTGAGGTGGCCAAGATTGAGGAAGTATCAAGTAATGGCCCAGCTCAACTTTCAGTGGAAGACACCCCACAGGATGATGGACAGAATCTCCATGAGCCAAAGTCAAGACCACTTTCACCTTATGCAATGTAAGTTGATTTCAATTTCCTTTAACTTTTTCTCAGTTCTTCTCCAAATGCTCTCCATTCCTTATGATAGAAGAAAGAGAGGGGATGGTGAGATAGCTGTTCAGGACACAATGGCTTATTATAACTGTGACTTTGATTTTTGGTTGAAATTCAAGTGAGTGAATAAGTCTTATGGTAATTGATGAATGTACTAGGTTAGGACTATATAAGTGAGAAGATGATTAAGCCAAAAGCATCAAGGATTCATGGCTTTGAATCAATATGTAGTGCGAAATTTACTATTGTGGTTTCTAACGAGTGAATAGACAAATTGTTCCTCGAAATTGTAAGCATCAGTAGAAATAGTCCCTGATTTTTGCGAATTTGGAAATACATCCCTGAAATTGTAAAATGTTTGTCAAAATAGTCTCACTGTAAACTTTTAGTGGTAGGGACTATGACATGACATGTTAACTGAATACGTGGCTCTTCCATGTTAATCCTACATCAATGTCGCCACACCAAAGACTAATTTGCCTATGAAATTTAGGTCTTCAGAGACCTTCACAATTGCAATCACTAAAAATTGTCTTTGAGATGGCCTAAATTTCATATGCAAATTAGCTCCTACTGAGTTGGCCTTGATGTGGTTTCAAAGTGCAGTGTGATAACTTCAGTTAACGTGTCACATTATAGCCTCTTACGAAAGAAGTTAACTAAGGGACTTTTTTGAACAACATTTTACAATTTCATGGATGTATTTGTCAATTTGCAAAAAGGAGGGAGTATTTTGACCAAATCATACAATTTTGAGGACAGGTTTTTCTATTTACTCAGTTTCTAACTTATCATATGTAAGATCAAAACTTTGTGGACAGGTTTAGCACAATTCGTGGTATCAAAACTTTGTGGTTTGTTTTTCTTGTGTACAGGTATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAAATACATCTTCTGTGGGTTCGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATACTGATGCAGTATCCATATCTTCTGTGAGTGAGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATATTGATGCAGTATCAAGCAATGGACCAGCCCAACTCTCAGTGGAAGATACACCAAAGGAGGATGGACAGGATCTCCATGAACCAAAGTCAAGACCACTTTCACCTTTTGCAATGTAAGTTGATTCCAACTTACCATCAATTTTTCTTATTTCTTCTCCAAAGATTCTTCATTCGTTATTATAGAAGAGAGAAAGAGAGGAGCCTGAATTCCCCAAGGTTAAGGAATCCTGCAGTCATGCAGTCACTGCATTGGAAGCCGTTTGATTGATATCGGATGGTCTAGATTTAGTTGTATAGTAGTGACATTATGATCTTATGCAAATGAACTTTTCAGGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGACAATCCTAG

Protein sequence

>MS.gene45730.t1

MEAFSLTSTTIPSSLTRREAAAVKPSGHVNLSKYSHFINYPFTTTPSRSRIRSNIIRAQVSGSTKSSPAEKKDSKDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRSAQRAGALVQSVKQLKLDGTSGGSEAVEKLEIVECDLEKPEQIKSALGNASTVICTIGASEKEIFDITGPYRIDYMATKNLVDAASVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMAAMAKNPELSYCKIVEVIAETTAPLTPAEKLLAKIPSQRPYIPSPKVQEPDTAAVSNPAPSANVTEAVPSISPQKETEQPEPVAEVPSITPQKETEQPKPVAKQPLSPYTAYDDLKPPSSPSPVKPSDKKQINISDAVPTPSSSDAPSNIPEIDVISQTTTSSKGKESLSPFAAYPDLKPPSSPSPNAPTTSISTSSVGEVAKIEEVSSNGPAQLSVEDTPQDDGQNLHEPKSRPLSPYAMYPDLKPPSSPSPNAPNTSSVGSVPNIDAVSTSSVGGVPNTDAVSISSVSEVPNIDAVSTSSVGGVPNIDAVSSNGPAQLSVEDTPKEDGQDLHEPKSRPLSPFAMYEDLKPPASPSPSFRQS