Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272680 | PNX58556.1 | 89.189 | 148 | 16 | 0 | 1 | 148 | 1 | 148 | 5.51e-87 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272680 | A0A2K3JX36 | 89.189 | 148 | 16 | 0 | 1 | 148 | 1 | 148 | 2.63e-87 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa0272680 | 0.819183 | 1.327501e-52 | -8.615850e-47 |
| Msa0012460 | Msa0272680 | 0.811843 | 5.716977e-51 | -8.615850e-47 |
| Msa0024070 | Msa0272680 | 0.815455 | 9.164965e-52 | -8.615850e-47 |
| Msa0025830 | Msa0272680 | 0.808956 | 2.399815e-50 | -8.615850e-47 |
| Msa0035090 | Msa0272680 | 0.806765 | 7.017961e-50 | -8.615850e-47 |
| Msa0044250 | Msa0272680 | 0.838127 | 3.458235e-57 | -8.615850e-47 |
| Msa0044380 | Msa0272680 | 0.814815 | 1.271403e-51 | -8.615850e-47 |
| Msa0047400 | Msa0272680 | 0.803222 | 3.864150e-49 | -8.615850e-47 |
| Msa0067820 | Msa0272680 | 0.809963 | 1.458842e-50 | -8.615850e-47 |
| Msa0073350 | Msa0272680 | 0.814373 | 1.592688e-51 | -8.615850e-47 |
| Msa0079530 | Msa0272680 | 0.808099 | 3.658366e-50 | -8.615850e-47 |
| Msa0081300 | Msa0272680 | 0.803809 | 2.919658e-49 | -8.615850e-47 |
| Msa0090760 | Msa0272680 | 0.803833 | 2.886354e-49 | -8.615850e-47 |
| Msa0092660 | Msa0272680 | 0.800891 | 1.165144e-48 | -8.615850e-47 |
| Msa0092750 | Msa0272680 | 0.804001 | 2.663507e-49 | -8.615850e-47 |
| Msa0104190 | Msa0272680 | 0.815765 | 7.818056e-52 | -8.615850e-47 |
| Msa0120980 | Msa0272680 | 0.805510 | 1.289019e-49 | -8.615850e-47 |
| Msa0144340 | Msa0272680 | 0.805103 | 1.568785e-49 | -8.615850e-47 |
| Msa0151790 | Msa0272680 | 0.800331 | 1.515509e-48 | -8.615850e-47 |
| Msa0175280 | Msa0272680 | 0.807428 | 5.078962e-50 | -8.615850e-47 |
| Msa0181010 | Msa0272680 | 0.809084 | 2.253018e-50 | -8.615850e-47 |
| Msa0181380 | Msa0272680 | 0.807554 | 4.776473e-50 | -8.615850e-47 |
| Msa0183490 | Msa0272680 | 0.811177 | 7.974794e-51 | -8.615850e-47 |
| Msa0185550 | Msa0272680 | 0.802130 | 6.492212e-49 | -8.615850e-47 |
| Msa0190000 | Msa0272680 | 0.816754 | 4.697997e-52 | -8.615850e-47 |
| Msa0192520 | Msa0272680 | 0.972971 | 1.206708e-135 | -8.615850e-47 |
| Msa0192590 | Msa0272680 | 0.992556 | 5.291971e-194 | -8.615850e-47 |
| Msa0206970 | Msa0272680 | 0.812652 | 3.806104e-51 | -8.615850e-47 |
| Msa0217300 | Msa0272680 | 0.803090 | 4.114832e-49 | -8.615850e-47 |
| Msa0223390 | Msa0272680 | 0.802101 | 6.583081e-49 | -8.615850e-47 |
| Msa0224980 | Msa0272680 | 0.813606 | 2.351061e-51 | -8.615850e-47 |
| Msa0225030 | Msa0272680 | 0.812257 | 4.644032e-51 | -8.615850e-47 |
| Msa0234930 | Msa0272680 | 0.800491 | 1.405722e-48 | -8.615850e-47 |
| Msa0235180 | Msa0272680 | 0.811662 | 6.259949e-51 | -8.615850e-47 |
| Msa0236350 | Msa0272680 | 0.824596 | 7.408772e-54 | -8.615850e-47 |
| Msa0250520 | Msa0272680 | 0.811020 | 8.628328e-51 | -8.615850e-47 |
| Msa0253410 | Msa0272680 | 0.816190 | 6.284295e-52 | -8.615850e-47 |
| Msa0258380 | Msa0272680 | 0.816231 | 6.153107e-52 | -8.615850e-47 |
| Msa0258410 | Msa0272680 | 0.819604 | 1.064632e-52 | -8.615850e-47 |
| Msa0267130 | Msa0272680 | 0.810800 | 9.625665e-51 | -8.615850e-47 |
| Msa0269830 | Msa0272680 | 0.803036 | 4.221811e-49 | -8.615850e-47 |
| Msa0272680 | Msa0273270 | 0.803850 | 2.862920e-49 | -8.615850e-47 |
| Msa0272680 | Msa0274870 | 0.823302 | 1.490564e-53 | -8.615850e-47 |
| Msa0272680 | Msa0280140 | 0.801527 | 8.633402e-49 | -8.615850e-47 |
| Msa0272680 | Msa0282860 | 0.802126 | 6.504270e-49 | -8.615850e-47 |
| Msa0272680 | Msa0284260 | 0.803838 | 2.880083e-49 | -8.615850e-47 |
| Msa0272680 | Msa0285740 | 0.807774 | 4.288790e-50 | -8.615850e-47 |
| Msa0272680 | Msa0288360 | 0.811396 | 7.151049e-51 | -8.615850e-47 |
| Msa0272680 | Msa0302660 | 0.812406 | 4.308650e-51 | -8.615850e-47 |
| Msa0272680 | Msa0307750 | 0.806902 | 6.565338e-50 | -8.615850e-47 |
| Msa0272680 | Msa0308430 | 0.801420 | 9.079120e-49 | -8.615850e-47 |
| Msa0272680 | Msa0327900 | 0.805954 | 1.040253e-49 | -8.615850e-47 |
| Msa0272680 | Msa0335740 | 0.821861 | 3.223444e-53 | -8.615850e-47 |
| Msa0272680 | Msa0340440 | 0.808344 | 3.243191e-50 | -8.615850e-47 |
| Msa0272680 | Msa0341710 | 0.801292 | 9.643779e-49 | -8.615850e-47 |
| Msa0272680 | Msa0347060 | 0.804918 | 1.715217e-49 | -8.615850e-47 |
| Msa0272680 | Msa0354490 | 0.819630 | 1.050202e-52 | -8.615850e-47 |
| Msa0272680 | Msa0367370 | 0.820511 | 6.600242e-53 | -8.615850e-47 |
| Msa0272680 | Msa0370180 | 0.839802 | 1.274463e-57 | -8.615850e-47 |
| Msa0272680 | Msa0371050 | 0.816524 | 5.289461e-52 | -8.615850e-47 |
| Msa0272680 | Msa0371870 | 0.800014 | 1.758110e-48 | -8.615850e-47 |
| Msa0272680 | Msa0376760 | 0.814219 | 1.722308e-51 | -8.615850e-47 |
| Msa0272680 | Msa0379090 | 0.829846 | 4.094915e-55 | -8.615850e-47 |
| Msa0272680 | Msa0379110 | 0.818589 | 1.811664e-52 | -8.615850e-47 |
| Msa0272680 | Msa0379390 | 0.801116 | 1.047754e-48 | -8.615850e-47 |
| Msa0272680 | Msa0379900 | 0.807566 | 4.747825e-50 | -8.615850e-47 |
| Msa0272680 | Msa0380440 | 0.801521 | 8.659164e-49 | -8.615850e-47 |
| Msa0272680 | Msa0383570 | 0.819219 | 1.303126e-52 | -8.615850e-47 |
| Msa0272680 | Msa0387120 | 0.807394 | 5.165013e-50 | -8.615850e-47 |
| Msa0272680 | Msa0401370 | 0.805623 | 1.220745e-49 | -8.615850e-47 |
| Msa0272680 | Msa0415050 | 0.803510 | 3.368222e-49 | -8.615850e-47 |
| Msa0272680 | Msa0415460 | 0.816742 | 4.726975e-52 | -8.615850e-47 |
| Msa0272680 | Msa0415930 | 0.807169 | 5.764039e-50 | -8.615850e-47 |
| Msa0272680 | Msa0420100 | 0.800443 | 1.437954e-48 | -8.615850e-47 |
| Msa0272680 | Msa0421790 | 0.801827 | 7.493156e-49 | -8.615850e-47 |
| Msa0272680 | Msa0426480 | 0.823858 | 1.104246e-53 | -8.615850e-47 |
| Msa0272680 | Msa0434630 | 0.815199 | 1.044658e-51 | -8.615850e-47 |
| Msa0272680 | Msa0447820 | 0.817276 | 3.587326e-52 | -8.615850e-47 |
| Msa0272680 | Msa0450780 | 0.810649 | 1.038028e-50 | -8.615850e-47 |
| Msa0272680 | Msa0457750 | 0.803303 | 3.718121e-49 | -8.615850e-47 |
| Msa0272680 | Msa0467890 | 0.815152 | 1.069918e-51 | -8.615850e-47 |
| Msa0272680 | Msa0467970 | 0.808220 | 3.447221e-50 | -8.615850e-47 |
| Msa0272680 | Msa0471700 | 0.816172 | 6.342282e-52 | -8.615850e-47 |
| Msa0272680 | Msa0473010 | 0.808162 | 3.546848e-50 | -8.615850e-47 |
| Msa0272680 | Msa0476150 | 0.803004 | 4.286515e-49 | -8.615850e-47 |
| Msa0272680 | Msa0480150 | 0.806869 | 6.670077e-50 | -8.615850e-47 |
| Msa0272680 | Msa0485350 | 0.820666 | 6.079348e-53 | -8.615850e-47 |
| Msa0272680 | Msa0517190 | 0.804396 | 2.204594e-49 | -8.615850e-47 |
| Msa0272680 | Msa0524020 | 0.809622 | 1.727878e-50 | -8.615850e-47 |
| Msa0272680 | Msa0524570 | 0.805973 | 1.030569e-49 | -8.615850e-47 |
| Msa0272680 | Msa0526130 | 0.805830 | 1.104460e-49 | -8.615850e-47 |
| Msa0272680 | Msa0528870 | 0.810919 | 9.073631e-51 | -8.615850e-47 |
| Msa0272680 | Msa0553350 | 0.839829 | 1.253898e-57 | -8.615850e-47 |
| Msa0272680 | Msa0555940 | 0.818740 | 1.674053e-52 | -8.615850e-47 |
| Msa0272680 | Msa0556960 | 0.804854 | 1.768367e-49 | -8.615850e-47 |
| Msa0272680 | Msa0565930 | 0.800264 | 1.563733e-48 | -8.615850e-47 |
| Msa0272680 | Msa0567290 | 0.800643 | 1.309261e-48 | -8.615850e-47 |
| Msa0272680 | Msa0579610 | 0.807013 | 6.217605e-50 | -8.615850e-47 |
| Msa0272680 | Msa0583810 | 0.826170 | 3.142951e-54 | -8.615850e-47 |
| Msa0272680 | Msa0612730 | 0.815500 | 8.953980e-52 | -8.615850e-47 |
| Msa0272680 | Msa0619060 | 0.804719 | 1.887408e-49 | -8.615850e-47 |
| Msa0272680 | Msa0619170 | 0.807117 | 5.911008e-50 | -8.615850e-47 |
| Msa0272680 | Msa0645040 | 0.801059 | 1.076633e-48 | -8.615850e-47 |
| Msa0272680 | Msa0647710 | 0.848815 | 4.817770e-60 | -8.615850e-47 |
| Msa0272680 | Msa0652360 | 0.826934 | 2.065536e-54 | -8.615850e-47 |
| Msa0272680 | Msa0677040 | 0.803594 | 3.235029e-49 | -8.615850e-47 |
| Msa0272680 | Msa0690530 | 0.839097 | 1.942649e-57 | -8.615850e-47 |
| Msa0272680 | Msa0695930 | 0.804414 | 2.185312e-49 | -8.615850e-47 |
| Msa0272680 | Msa0703760 | 0.800356 | 1.497497e-48 | -8.615850e-47 |
| Msa0272680 | Msa0704570 | 0.810705 | 1.009383e-50 | -8.615850e-47 |
| Msa0272680 | Msa0720380 | 0.815317 | 9.834195e-52 | -8.615850e-47 |
| Msa0272680 | Msa0732100 | 0.802160 | 6.401493e-49 | -8.615850e-47 |
| Msa0272680 | Msa0760950 | 0.805710 | 1.170600e-49 | -8.615850e-47 |
| Msa0272680 | Msa0790180 | 0.809161 | 2.170028e-50 | -8.615850e-47 |
| Msa0272680 | Msa0791170 | 0.800437 | 1.441558e-48 | -8.615850e-47 |
| Msa0272680 | Msa0798500 | 0.800941 | 1.137986e-48 | -8.615850e-47 |
| Msa0272680 | Msa0803220 | 0.817327 | 3.492474e-52 | -8.615850e-47 |
| Msa0272680 | Msa0814760 | 0.831436 | 1.670931e-55 | -8.615850e-47 |
| Msa0272680 | Msa0851870 | 0.833066 | 6.600939e-56 | -8.615850e-47 |
| Msa0272680 | Msa0866650 | 0.802633 | 5.113160e-49 | -8.615850e-47 |
| Msa0272680 | Msa0869090 | 0.801603 | 8.330110e-49 | -8.615850e-47 |
| Msa0272680 | Msa0881050 | 0.801994 | 6.923070e-49 | -8.615850e-47 |
| Msa0272680 | Msa0893390 | 0.819996 | 8.661407e-53 | -8.615850e-47 |
| Msa0272680 | Msa0901140 | 0.814495 | 1.496763e-51 | -8.615850e-47 |
| Msa0272680 | Msa0907890 | 0.804223 | 2.394551e-49 | -8.615850e-47 |
| Msa0272680 | Msa0926090 | 0.800329 | 1.516855e-48 | -8.615850e-47 |
| Msa0272680 | Msa0934800 | 0.801177 | 1.018117e-48 | -8.615850e-47 |
| Msa0272680 | Msa0946650 | 0.828798 | 7.356497e-55 | -8.615850e-47 |
| Msa0272680 | Msa0949780 | 0.802076 | 6.660991e-49 | -8.615850e-47 |
| Msa0272680 | Msa0959710 | 0.801801 | 7.584589e-49 | -8.615850e-47 |
| Msa0272680 | Msa0968010 | 0.818516 | 1.882017e-52 | -8.615850e-47 |
| Msa0272680 | Msa0985570 | 0.803207 | 3.892640e-49 | -8.615850e-47 |
| Msa0272680 | Msa1022310 | 0.823258 | 1.525640e-53 | -8.615850e-47 |
| Msa0272680 | Msa1032970 | 0.814619 | 1.404899e-51 | -8.615850e-47 |
| Msa0272680 | Msa1040010 | 0.805555 | 1.261598e-49 | -8.615850e-47 |
| Msa0272680 | Msa1054890 | 0.802862 | 4.586218e-49 | -8.615850e-47 |
| Msa0272680 | Msa1067430 | 0.808584 | 2.882501e-50 | -8.615850e-47 |
| Msa0272680 | Msa1080620 | 0.807470 | 4.977096e-50 | -8.615850e-47 |
| Msa0272680 | Msa1080690 | 0.807549 | 4.786943e-50 | -8.615850e-47 |
| Msa0272680 | Msa1081850 | 0.813018 | 3.164820e-51 | -8.615850e-47 |
| Msa0272680 | Msa1084150 | 0.806507 | 7.955482e-50 | -8.615850e-47 |
| Msa0272680 | Msa1090230 | 0.819622 | 1.054537e-52 | -8.615850e-47 |
| Msa0272680 | Msa1106760 | 0.806055 | 9.902866e-50 | -8.615850e-47 |
| Msa0272680 | Msa1116010 | 0.812022 | 5.226389e-51 | -8.615850e-47 |
| Msa0272680 | Msa1117690 | 0.811339 | 7.356497e-51 | -8.615850e-47 |
| Msa0272680 | Msa1121630 | 0.827473 | 1.534074e-54 | -8.615850e-47 |
| Msa0272680 | Msa1126310 | 0.801738 | 7.816537e-49 | -8.615850e-47 |
| Msa0272680 | Msa1127510 | 0.801133 | 1.039531e-48 | -8.615850e-47 |
| Msa0272680 | Msa1149760 | 0.803385 | 3.575072e-49 | -8.615850e-47 |
| Msa0272680 | Msa1150170 | 0.804712 | 1.893938e-49 | -8.615850e-47 |
| Msa0272680 | Msa1154130 | 0.802426 | 5.641264e-49 | -8.615850e-47 |
| Msa0272680 | Msa1156210 | 0.835351 | 1.765100e-56 | -8.615850e-47 |
| Msa0272680 | Msa1162470 | 0.831691 | 1.446357e-55 | -8.615850e-47 |
| Msa0272680 | Msa1183610 | 0.803915 | 2.775234e-49 | -8.615850e-47 |
| Msa0272680 | Msa1183730 | 0.817706 | 2.869379e-52 | -8.615850e-47 |
| Msa0272680 | Msa1192150 | 0.802667 | 5.032795e-49 | -8.615850e-47 |
| Msa0272680 | Msa1193680 | 0.802540 | 5.344327e-49 | -8.615850e-47 |
| Msa0272680 | Msa1206440 | 0.810648 | 1.038138e-50 | -8.615850e-47 |
| Msa0272680 | Msa1213540 | 0.804855 | 1.768335e-49 | -8.615850e-47 |
| Msa0272680 | Msa1214220 | 0.804658 | 1.943400e-49 | -8.615850e-47 |
| Msa0272680 | Msa1215770 | 0.807325 | 5.341605e-50 | -8.615850e-47 |
| Msa0272680 | Msa1222390 | 0.803634 | 3.174168e-49 | -8.615850e-47 |
| Msa0272680 | Msa1228950 | 0.812091 | 5.046111e-51 | -8.615850e-47 |
| Msa0272680 | Msa1229050 | 0.800525 | 1.383399e-48 | -8.615850e-47 |
| Msa0272680 | Msa1234960 | 0.825471 | 4.604694e-54 | -8.615850e-47 |
| Msa0272680 | Msa1236090 | 0.800135 | 1.661272e-48 | -8.615850e-47 |
| Msa0272680 | Msa1258940 | 0.800495 | 1.403226e-48 | -8.615850e-47 |
| Msa0272680 | Msa1271490 | 0.800874 | 1.174501e-48 | -8.615850e-47 |
| Msa0272680 | Msa1274740 | 0.804582 | 2.016155e-49 | -8.615850e-47 |
| Msa0272680 | Msa1302750 | 0.814079 | 1.848951e-51 | -8.615850e-47 |
| Msa0272680 | Msa1312730 | 0.800557 | 1.362674e-48 | -8.615850e-47 |
| Msa0272680 | Msa1336320 | 0.813340 | 2.689599e-51 | -8.615850e-47 |
| Msa0272680 | Msa1348770 | 0.817207 | 3.717576e-52 | -8.615850e-47 |
| Msa0272680 | Msa1356680 | 0.815740 | 7.920163e-52 | -8.615850e-47 |
| Msa0272680 | Msa1366400 | 0.802751 | 4.835000e-49 | -8.615850e-47 |
| Msa0272680 | Msa1367810 | 0.813952 | 1.972884e-51 | -8.615850e-47 |
| Msa0272680 | Msa1368730 | 0.800681 | 1.285863e-48 | -8.615850e-47 |
| Msa0272680 | Msa1373500 | 0.824187 | 9.243982e-54 | -8.615850e-47 |
| Msa0272680 | Msa1374810 | 0.803975 | 2.697146e-49 | -8.615850e-47 |
| Msa0272680 | Msa1374850 | 0.811573 | 6.543140e-51 | -8.615850e-47 |
| Msa0272680 | Msa1376560 | 0.809998 | 1.433972e-50 | -8.615850e-47 |
| Msa0272680 | Msa1393200 | 0.813902 | 2.022851e-51 | -8.615850e-47 |
| Msa0272680 | Msa1406550 | 0.806321 | 8.706666e-50 | -8.615850e-47 |
| Msa0272680 | Msa1415250 | 0.812489 | 4.133109e-51 | -8.615850e-47 |
| Msa0272680 | Msa1422490 | 0.812824 | 3.490236e-51 | -8.615850e-47 |
| Msa0272680 | Msa1424240 | 0.827765 | 1.305472e-54 | -8.615850e-47 |
| Msa0272680 | Msa1430940 | 0.805764 | 1.140582e-49 | -8.615850e-47 |
| Msa0272680 | Msa1435980 | 0.800199 | 1.611687e-48 | -8.615850e-47 |
| Msa0272680 | Msa1439800 | 0.810707 | 1.008431e-50 | -8.615850e-47 |
| Msa0272680 | Msa1444750 | 0.808763 | 2.639358e-50 | -8.615850e-47 |
| Msa0272680 | Msa1449320 | 0.809008 | 2.339924e-50 | -8.615850e-47 |
| Msa0272680 | Msa1455120 | 0.823766 | 1.160433e-53 | -8.615850e-47 |
| Msa0272680 | Msa1458330 | 0.807476 | 4.961176e-50 | -8.615850e-47 |
| Msa0272680 | Msa1460650 | 0.805040 | 1.616932e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272680 | MtrunA17_Chr2g0282711 | 95.270 | 148 | 7 | 0 | 1 | 148 | 3 | 150 | 8.00e-85 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272680 | AT2G33855.1 | 55.944 | 143 | 61 | 1 | 1 | 143 | 1 | 141 | 7.64e-48 | 151 |
Find 58 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGGGTTGGTGTGGTTGT+GGG | 0.269536 | 2_3:+4210310 | None:intergenic |
| GGTTTGTAAGGATGTGTGTT+AGG | 0.271091 | 2_3:+4210332 | None:intergenic |
| GTGGAGGGTTGGTGTGGTTG+TGG | 0.275633 | 2_3:+4210309 | None:intergenic |
| GTGTGGTTGTGGGGTTTGTA+AGG | 0.288036 | 2_3:+4210320 | None:intergenic |
| TATCAATCAAGATAACTAAA+TGG | 0.290563 | 2_3:+4209941 | None:intergenic |
| TGGGTATTCCTAAAACTTCT+TGG | 0.291474 | 2_3:-4210159 | Msa0272680:CDS |
| GGTAATAAAATAGGTATAAG+AGG | 0.312742 | 2_3:+4209998 | None:intergenic |
| AGTGACAACAACAAAATATT+AGG | 0.321966 | 2_3:+4209977 | None:intergenic |
| TGTTGTTGTCACTTATGATA+TGG | 0.343100 | 2_3:-4209967 | Msa0272680:CDS |
| AAAATATTAGGTAATAAAAT+AGG | 0.344419 | 2_3:+4209989 | None:intergenic |
| AATTATCATTCTTGCTCAAA+AGG | 0.344967 | 2_3:-4210192 | Msa0272680:CDS |
| AAATCCCCTGCTACCTCAAA+TGG | 0.355642 | 2_3:-4210264 | Msa0272680:CDS |
| GAATCAATGGTGGAGGTTGC+TGG | 0.357663 | 2_3:+4210119 | None:intergenic |
| TAAGGATGTGTGTTAGGGCT+TGG | 0.394935 | 2_3:+4210338 | None:intergenic |
| GTTTGTAAGGATGTGTGTTA+GGG | 0.413826 | 2_3:+4210333 | None:intergenic |
| AACAAAGGAAGAGTTATGTT+AGG | 0.432276 | 2_3:-4210060 | Msa0272680:CDS |
| GGAAGAGTTATGTTAGGAAA+AGG | 0.438245 | 2_3:-4210054 | Msa0272680:CDS |
| GATGGATTGGAGCAGAGGAT+TGG | 0.459996 | 2_3:+4210232 | None:intergenic |
| CTCAAAAGGGTCTTCACAAT+GGG | 0.476531 | 2_3:-4210178 | Msa0272680:CDS |
| GAAGAGATGGATTGGAGCAG+AGG | 0.480756 | 2_3:+4210227 | None:intergenic |
| GGAGGGTTGGTGTGGTTGTG+GGG | 0.493337 | 2_3:+4210311 | None:intergenic |
| AGGGTTAACATTTGTGCCAA+GGG | 0.493789 | 2_3:+4210018 | None:intergenic |
| GGATTGGAGCAGAGGATTGG+TGG | 0.495688 | 2_3:+4210235 | None:intergenic |
| ATTATCATTCTTGCTCAAAA+GGG | 0.496190 | 2_3:-4210191 | Msa0272680:CDS |
| GTAGTCCCATTTGAGGTAGC+AGG | 0.497802 | 2_3:+4210258 | None:intergenic |
| ACTCCTTCAGCAAGAATCAA+TGG | 0.503351 | 2_3:+4210106 | None:intergenic |
| AGGAGTGGAGGAAGCACGGT+GGG | 0.505781 | 2_3:-4210089 | Msa0272680:CDS |
| AATGGTGGAGGTTGCTGGAA+TGG | 0.508912 | 2_3:+4210124 | None:intergenic |
| AATCCCCTGCTACCTCAAAT+GGG | 0.518789 | 2_3:-4210263 | Msa0272680:CDS |
| ATGTTAGGAAAAGGCTTGCA+AGG | 0.547320 | 2_3:-4210045 | Msa0272680:CDS |
| GTATTCCTAAAACTTCTTGG+AGG | 0.547416 | 2_3:-4210156 | Msa0272680:CDS |
| GAGGGTTAACATTTGTGCCA+AGG | 0.547578 | 2_3:+4210017 | None:intergenic |
| GATTGGAGCAGAGGATTGGT+GGG | 0.557001 | 2_3:+4210236 | None:intergenic |
| GTAATAAAATAGGTATAAGA+GGG | 0.558203 | 2_3:+4209999 | None:intergenic |
| GCTCAAAAGGGTCTTCACAA+TGG | 0.561078 | 2_3:-4210179 | Msa0272680:CDS |
| TAGTCCCATTTGAGGTAGCA+GGG | 0.566660 | 2_3:+4210259 | None:intergenic |
| CCACCATTGATTCTTGCTGA+AGG | 0.574245 | 2_3:-4210109 | Msa0272680:CDS |
| ATTGATTCTTGCTGAAGGAG+TGG | 0.575091 | 2_3:-4210104 | Msa0272680:CDS |
| CTGAAGGAGTGGAGGAAGCA+CGG | 0.592911 | 2_3:-4210093 | Msa0272680:CDS |
| TTGAGAGTGGAGGGTTGGTG+TGG | 0.593756 | 2_3:+4210303 | None:intergenic |
| AAGAATTGAGAGTGGAGGGT+TGG | 0.597424 | 2_3:+4210298 | None:intergenic |
| TCAGCAAGAATCAATGGTGG+AGG | 0.602784 | 2_3:+4210112 | None:intergenic |
| TTGGTGGGTAGTCCCATTTG+AGG | 0.608890 | 2_3:+4210251 | None:intergenic |
| GAGGTAGCAGGGGATTTGTG+TGG | 0.609669 | 2_3:+4210270 | None:intergenic |
| AGGCTTGCAAGGAAACCCCT+TGG | 0.615306 | 2_3:-4210034 | Msa0272680:CDS |
| GATTCTTGCTGAAGGAGTGG+AGG | 0.617592 | 2_3:-4210101 | Msa0272680:CDS |
| AGGTTGCTGGAATGGACACT+TGG | 0.621740 | 2_3:+4210132 | None:intergenic |
| CTATGAAGAATTGAGAGTGG+AGG | 0.622479 | 2_3:+4210293 | None:intergenic |
| AGTCCCATTTGAGGTAGCAG+GGG | 0.633905 | 2_3:+4210260 | None:intergenic |
| GGAGTGGAGGAAGCACGGTG+GGG | 0.635320 | 2_3:-4210088 | Msa0272680:CDS |
| TGGCTATGAAGAATTGAGAG+TGG | 0.639401 | 2_3:+4210290 | None:intergenic |
| TATGAAGAATTGAGAGTGGA+GGG | 0.652100 | 2_3:+4210294 | None:intergenic |
| AAGGAGTGGAGGAAGCACGG+TGG | 0.655059 | 2_3:-4210090 | Msa0272680:CDS |
| CACGGTGGGGAGTTGAACAA+AGG | 0.655259 | 2_3:-4210075 | Msa0272680:CDS |
| GGGTTAACATTTGTGCCAAG+GGG | 0.655878 | 2_3:+4210019 | None:intergenic |
| TGAGCATGGAAGATACAACA+TGG | 0.667356 | 2_3:-4210372 | None:intergenic |
| CCTTCAGCAAGAATCAATGG+TGG | 0.683493 | 2_3:+4210109 | None:intergenic |
| GAGCATGGAAGATACAACAT+GGG | 0.707943 | 2_3:-4210371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAGGTAATAAAAT+AGG | + | chr2_3:4210324-4210343 | None:intergenic | 10.0% |
| !! | GTAATAAAATAGGTATAAGA+GGG | + | chr2_3:4210314-4210333 | None:intergenic | 20.0% |
| ! | AATTATCATTCTTGCTCAAA+AGG | - | chr2_3:4210118-4210137 | Msa0272680:CDS | 25.0% |
| ! | ATTATCATTCTTGCTCAAAA+GGG | - | chr2_3:4210119-4210138 | Msa0272680:CDS | 25.0% |
| ! | GGTAATAAAATAGGTATAAG+AGG | + | chr2_3:4210315-4210334 | None:intergenic | 25.0% |
| ! | AGTGACAACAACAAAATATT+AGG | + | chr2_3:4210336-4210355 | None:intergenic | 25.0% |
| !!! | TTTTTTGAGAAGAGATGGAT+TGG | + | chr2_3:4210094-4210113 | None:intergenic | 30.0% |
| ATCCATCTCTTCTCAAAAAA+TGG | - | chr2_3:4210094-4210113 | Msa0272680:CDS | 30.0% | |
| TCCATCTCTTCTCAAAAAAT+GGG | - | chr2_3:4210095-4210114 | Msa0272680:CDS | 30.0% | |
| AACAAAGGAAGAGTTATGTT+AGG | - | chr2_3:4210250-4210269 | Msa0272680:CDS | 30.0% | |
| ! | TGTTGTTGTCACTTATGATA+TGG | - | chr2_3:4210343-4210362 | Msa0272680:CDS | 30.0% |
| GTTTGTAAGGATGTGTGTTA+GGG | + | chr2_3:4209980-4209999 | None:intergenic | 35.0% | |
| TATGAAGAATTGAGAGTGGA+GGG | + | chr2_3:4210019-4210038 | None:intergenic | 35.0% | |
| !!! | TCCCATTTTTTGAGAAGAGA+TGG | + | chr2_3:4210099-4210118 | None:intergenic | 35.0% |
| TGGGTATTCCTAAAACTTCT+TGG | - | chr2_3:4210151-4210170 | Msa0272680:CDS | 35.0% | |
| GTATTCCTAAAACTTCTTGG+AGG | - | chr2_3:4210154-4210173 | Msa0272680:CDS | 35.0% | |
| GGAAGAGTTATGTTAGGAAA+AGG | - | chr2_3:4210256-4210275 | Msa0272680:CDS | 35.0% | |
| GGTTTGTAAGGATGTGTGTT+AGG | + | chr2_3:4209981-4210000 | None:intergenic | 40.0% | |
| CTATGAAGAATTGAGAGTGG+AGG | + | chr2_3:4210020-4210039 | None:intergenic | 40.0% | |
| TGGCTATGAAGAATTGAGAG+TGG | + | chr2_3:4210023-4210042 | None:intergenic | 40.0% | |
| CTCAAAAGGGTCTTCACAAT+GGG | - | chr2_3:4210132-4210151 | Msa0272680:CDS | 40.0% | |
| ! | TTGGACCTCCAAGAAGTTTT+AGG | + | chr2_3:4210162-4210181 | None:intergenic | 40.0% |
| ACTCCTTCAGCAAGAATCAA+TGG | + | chr2_3:4210207-4210226 | None:intergenic | 40.0% | |
| ! | ATTGATTCTTGCTGAAGGAG+TGG | - | chr2_3:4210206-4210225 | Msa0272680:CDS | 40.0% |
| ATGTTAGGAAAAGGCTTGCA+AGG | - | chr2_3:4210265-4210284 | Msa0272680:CDS | 40.0% | |
| AGGGTTAACATTTGTGCCAA+GGG | + | chr2_3:4210295-4210314 | None:intergenic | 40.0% | |
| TAAGGATGTGTGTTAGGGCT+TGG | + | chr2_3:4209975-4209994 | None:intergenic | 45.0% | |
| AAGAATTGAGAGTGGAGGGT+TGG | + | chr2_3:4210015-4210034 | None:intergenic | 45.0% | |
| AAATCCCCTGCTACCTCAAA+TGG | - | chr2_3:4210046-4210065 | Msa0272680:CDS | 45.0% | |
| AATCCCCTGCTACCTCAAAT+GGG | - | chr2_3:4210047-4210066 | Msa0272680:CDS | 45.0% | |
| ! | TAGTCCCATTTGAGGTAGCA+GGG | + | chr2_3:4210054-4210073 | None:intergenic | 45.0% |
| GCTCAAAAGGGTCTTCACAA+TGG | - | chr2_3:4210131-4210150 | Msa0272680:CDS | 45.0% | |
| TCAGCAAGAATCAATGGTGG+AGG | + | chr2_3:4210201-4210220 | None:intergenic | 45.0% | |
| CCTTCAGCAAGAATCAATGG+TGG | + | chr2_3:4210204-4210223 | None:intergenic | 45.0% | |
| !! | CCACCATTGATTCTTGCTGA+AGG | - | chr2_3:4210201-4210220 | Msa0272680:CDS | 45.0% |
| GGGTTAACATTTGTGCCAAG+GGG | + | chr2_3:4210294-4210313 | None:intergenic | 45.0% | |
| GAGGGTTAACATTTGTGCCA+AGG | + | chr2_3:4210296-4210315 | None:intergenic | 45.0% | |
| GTGTGGTTGTGGGGTTTGTA+AGG | + | chr2_3:4209993-4210012 | None:intergenic | 50.0% | |
| ! | AGTCCCATTTGAGGTAGCAG+GGG | + | chr2_3:4210053-4210072 | None:intergenic | 50.0% |
| ! | GTAGTCCCATTTGAGGTAGC+AGG | + | chr2_3:4210055-4210074 | None:intergenic | 50.0% |
| ! | TTGGTGGGTAGTCCCATTTG+AGG | + | chr2_3:4210062-4210081 | None:intergenic | 50.0% |
| ! | GATTGGAGCAGAGGATTGGT+GGG | + | chr2_3:4210077-4210096 | None:intergenic | 50.0% |
| !! | GATGGATTGGAGCAGAGGAT+TGG | + | chr2_3:4210081-4210100 | None:intergenic | 50.0% |
| !! | GAAGAGATGGATTGGAGCAG+AGG | + | chr2_3:4210086-4210105 | None:intergenic | 50.0% |
| AGGTTGCTGGAATGGACACT+TGG | + | chr2_3:4210181-4210200 | None:intergenic | 50.0% | |
| ! | AATGGTGGAGGTTGCTGGAA+TGG | + | chr2_3:4210189-4210208 | None:intergenic | 50.0% |
| ! | GAATCAATGGTGGAGGTTGC+TGG | + | chr2_3:4210194-4210213 | None:intergenic | 50.0% |
| GATTCTTGCTGAAGGAGTGG+AGG | - | chr2_3:4210209-4210228 | Msa0272680:CDS | 50.0% | |
| !! | TGGAGGGTTGGTGTGGTTGT+GGG | + | chr2_3:4210003-4210022 | None:intergenic | 55.0% |
| !! | TTGAGAGTGGAGGGTTGGTG+TGG | + | chr2_3:4210010-4210029 | None:intergenic | 55.0% |
| GAGGTAGCAGGGGATTTGTG+TGG | + | chr2_3:4210043-4210062 | None:intergenic | 55.0% | |
| GGATTGGAGCAGAGGATTGG+TGG | + | chr2_3:4210078-4210097 | None:intergenic | 55.0% | |
| CTGAAGGAGTGGAGGAAGCA+CGG | - | chr2_3:4210217-4210236 | Msa0272680:CDS | 55.0% | |
| CACGGTGGGGAGTTGAACAA+AGG | - | chr2_3:4210235-4210254 | Msa0272680:CDS | 55.0% | |
| AGGCTTGCAAGGAAACCCCT+TGG | - | chr2_3:4210276-4210295 | Msa0272680:CDS | 55.0% | |
| !! | GGAGGGTTGGTGTGGTTGTG+GGG | + | chr2_3:4210002-4210021 | None:intergenic | 60.0% |
| !! | GTGGAGGGTTGGTGTGGTTG+TGG | + | chr2_3:4210004-4210023 | None:intergenic | 60.0% |
| ! | AAGGAGTGGAGGAAGCACGG+TGG | - | chr2_3:4210220-4210239 | Msa0272680:CDS | 60.0% |
| ! | AGGAGTGGAGGAAGCACGGT+GGG | - | chr2_3:4210221-4210240 | Msa0272680:CDS | 60.0% |
| ! | GGAGTGGAGGAAGCACGGTG+GGG | - | chr2_3:4210222-4210241 | Msa0272680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4209943 | 4210389 | 4209943 | ID=Msa0272680;Name=Msa0272680 |
| chr2_3 | mRNA | 4209943 | 4210389 | 4209943 | ID=Msa0272680-mRNA-1;Parent=Msa0272680;Name=Msa0272680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|148 |
| chr2_3 | exon | 4209943 | 4210389 | 4209943 | ID=Msa0272680-mRNA-1:exon:2105;Parent=Msa0272680-mRNA-1 |
| chr2_3 | CDS | 4209943 | 4210389 | 4209943 | ID=Msa0272680-mRNA-1:cds;Parent=Msa0272680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
