AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677040 MtrunA17_Chr4g0020791 91.822 269 11 2 1 258 1 269 7.59e-167 472
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677040 AT3G47450.1 59.233 287 86 5 1 258 1 285 4.18e-99 300
Msa0677040 AT3G47450.2 59.233 287 86 5 1 258 1 285 4.86e-99 300

Find 66 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAACCTTCTTCTCTTTC+TGG 0.093378 4_4:-29134854 None:intergenic
GTGTGAATTTGAGGGAATTT+GGG 0.193149 4_4:-29131861 None:intergenic
TTAGTCACAACCATTATTAT+TGG 0.202467 4_4:-29134308 None:intergenic
GGTGTGAATTTGAGGGAATT+TGG 0.249809 4_4:-29131862 None:intergenic
CAAAGCTCTAATTGTCAAAT+TGG 0.252827 4_4:+29132657 Msa0677040:CDS
TTTGAGGGAATTTGGGGTTT+TGG 0.257424 4_4:-29131854 None:intergenic
ATCTTAATTGTGTTGGGGAT+TGG 0.326100 4_4:+29134445 Msa0677040:CDS
GCCTTCTGGTAAGCGAGATT+TGG 0.327081 4_4:-29131922 None:intergenic
AAATCATTGGTAGGAATAAC+TGG 0.335779 4_4:+29134816 Msa0677040:CDS
AATAATAATGGTTGTGACTA+AGG 0.353009 4_4:+29134310 Msa0677040:CDS
TACTGTTGTTGTTCTGTTTG+AGG 0.355375 4_4:-29132019 None:intergenic
TCTTAATTGTGTTGGGGATT+GGG 0.360762 4_4:+29134446 Msa0677040:CDS
CAAGGTTTGGTGTGAATTTG+AGG 0.371755 4_4:-29131870 None:intergenic
ATACTGATCTTAATTGTGTT+GGG 0.374200 4_4:+29134439 Msa0677040:CDS
GGGAAGAGATGTTTACATTC+TGG 0.376268 4_4:+29135456 Msa0677040:intron
CAATTTGACAATTAGAGCTT+TGG 0.384138 4_4:-29132656 None:intergenic
GCAGCGGCTCCGGTGCCTTC+TGG 0.386212 4_4:-29131936 None:intergenic
CAAATGACTGCTGGCGTTCG+AGG 0.395487 4_4:-29131980 None:intergenic
GTTGATATTGTTGACTTCAA+TGG 0.403407 4_4:+29134245 Msa0677040:CDS
GATACTGATCTTAATTGTGT+TGG 0.426541 4_4:+29134438 Msa0677040:CDS
TCTCACAAGTTCAAAATCAT+TGG 0.436735 4_4:+29134803 Msa0677040:CDS
AGAAAGAGGTGTTAAGAAAG+TGG 0.442252 4_4:-29131829 None:intergenic
ATTGCTGTCGCTTCTTGCTA+TGG 0.444708 4_4:+29132071 Msa0677040:CDS
TGGTGACGGAGCAGCGGCTC+CGG 0.447078 4_4:-29131946 None:intergenic
GTTCTGTTTGAGGATGAGAT+TGG 0.457626 4_4:-29132009 None:intergenic
ACAGAGAATGAGACAAGGTT+TGG 0.458531 4_4:-29131883 None:intergenic
TGGTGCTAATCCAATAATAA+TGG 0.459624 4_4:+29134298 Msa0677040:CDS
GTCGCTTCTTGCTATGGCTG+TGG 0.464139 4_4:+29132077 Msa0677040:CDS
AAATCCAGGAGCGTCATTAT+CGG 0.470024 4_4:-29132117 None:intergenic
TGTTGGGGATTGGGTTGTAG+AGG 0.476151 4_4:+29134455 Msa0677040:CDS
AAGGTTTGGTGTGAATTTGA+GGG 0.486640 4_4:-29131869 None:intergenic
CAATTAAGATCAGTATCTCT+TGG 0.489229 4_4:-29134432 None:intergenic
TGGTTGCTTCAAATGACTGC+TGG 0.489415 4_4:-29131989 None:intergenic
AGGTGTTAAGAAAGTGGATA+GGG 0.492139 4_4:-29131823 None:intergenic
ATAACTGCTGTTGGAGGACA+TGG 0.492972 4_4:+29132562 Msa0677040:CDS
CGTTCGAGGAACTTCTCGCC+TGG 0.498839 4_4:-29131966 None:intergenic
AGAAATCCAGAAAGAGAAGA+AGG 0.499062 4_4:+29134848 Msa0677040:CDS
TCCCGAGTGAGAGATCTTGC+TGG 0.512842 4_4:+29134278 Msa0677040:CDS
AGGAACTTCTCGCCTGGTGA+CGG 0.516252 4_4:-29131960 None:intergenic
GAGGTGTTAAGAAAGTGGAT+AGG 0.522644 4_4:-29131824 None:intergenic
ACAGCAATGGAAGATTTAAG+AGG 0.528143 4_4:-29132056 None:intergenic
TACTGATCTTAATTGTGTTG+GGG 0.536356 4_4:+29134440 Msa0677040:CDS
CACCAGCAAGATCTCTCACT+CGG 0.537176 4_4:-29134280 None:intergenic
GGAGCCGCTGCTCCGTCACC+AGG 0.550022 4_4:+29131948 Msa0677040:CDS
CAGCTTAAAACTGTTCTATG+TGG 0.554450 4_4:+29132508 Msa0677040:CDS
TGTGAATTTGAGGGAATTTG+GGG 0.556857 4_4:-29131860 None:intergenic
AGCTTAAAACTGTTCTATGT+GGG 0.557452 4_4:+29132509 Msa0677040:CDS
ACTTCCGATAATGACGCTCC+TGG 0.559301 4_4:+29132113 Msa0677040:CDS
GGAGGACATGGAGGATACTC+TGG 0.566422 4_4:+29132574 Msa0677040:CDS
TCATTATCGGAAGTTTGTAA+AGG 0.566778 4_4:-29132104 None:intergenic
ACAAGTTCAAAATCATTGGT+AGG 0.566810 4_4:+29134807 Msa0677040:CDS
TAAGATCAGTATCTCTTGGA+AGG 0.574434 4_4:-29134428 None:intergenic
GGTGAAATGATAACTGCTGT+TGG 0.575304 4_4:+29132553 Msa0677040:CDS
TTTCACCATGAGACAAAAGC+TGG 0.591764 4_4:-29132537 None:intergenic
TCTGGTAAGCGAGATTTGGA+AGG 0.595760 4_4:-29131918 None:intergenic
GTTTCGGAGAGGACAAATCC+AGG 0.598853 4_4:-29132131 None:intergenic
TCCAAATCTCGCTTACCAGA+AGG 0.599238 4_4:+29131921 Msa0677040:CDS
CTCGCCTGGTGACGGAGCAG+CGG 0.600406 4_4:-29131952 None:intergenic
ATAGCAAGAAGCGACAGCAA+TGG 0.623360 4_4:-29132069 None:intergenic
TCTCGCTTACCAGAAGGCAC+CGG 0.635447 4_4:+29131927 Msa0677040:CDS
GAAATGATAACTGCTGTTGG+AGG 0.645323 4_4:+29132556 Msa0677040:CDS
TTAAAACTGTTCTATGTGGG+CGG 0.648875 4_4:+29132512 Msa0677040:CDS
ACCAGCAAGATCTCTCACTC+GGG 0.656086 4_4:-29134279 None:intergenic
ACTGCTGTTGGAGGACATGG+AGG 0.674606 4_4:+29132565 Msa0677040:CDS
GGACATGGAGGATACTCTGG+CGG 0.680136 4_4:+29132577 Msa0677040:CDS
AATTCACAGAGAATGAGACA+AGG 0.746558 4_4:-29131888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTGAAG+AGG - chr4_4:29134716-29134735 None:intergenic 10.0%
!!! TTTTTCAAATTATTACATGT+CGG + chr4_4:29132217-29132236 Msa0677040:intron 15.0%
!!! CATTTTTGTTCTTATAAAAT+TGG + chr4_4:29132773-29132792 Msa0677040:intron 15.0%
!!! AGTTTATAAAAATTTGTTGA+TGG - chr4_4:29132826-29132845 None:intergenic 15.0%
!!! TAGATTTTTTTTTTTTGAGT+AGG - chr4_4:29133008-29133027 None:intergenic 15.0%
!!! CTTTTTTTTATGATAAGAAT+AGG - chr4_4:29133339-29133358 None:intergenic 15.0%
!!! TTTTTTTCGAAACAAATTAT+TGG - chr4_4:29133519-29133538 None:intergenic 15.0%
!!! ACTAGAAAACTTTTAAAATT+TGG + chr4_4:29133777-29133796 Msa0677040:intron 15.0%
!!! CTAGAAAACTTTTAAAATTT+GGG + chr4_4:29133778-29133797 Msa0677040:intron 15.0%
!! TTGTGATAATATGATAATAT+TGG - chr4_4:29134114-29134133 None:intergenic 15.0%
!! CAAAAAATTAACTAAAGAAT+TGG - chr4_4:29134659-29134678 None:intergenic 15.0%
!!! AATTAGTGTTGATAATAATT+AGG + chr4_4:29135064-29135083 Msa0677040:intron 15.0%
!! GTAATTCAATGATGTTATAA+CGG - chr4_4:29132192-29132211 None:intergenic 20.0%
!!! TTTTAGTTTTCTTATACACT+GGG + chr4_4:29132913-29132932 Msa0677040:intron 20.0%
!! TAAATTGTAGTCATGATTTA+TGG - chr4_4:29133098-29133117 None:intergenic 20.0%
!!! ATATGAGAAAGTATTTTGTA+TGG - chr4_4:29133175-29133194 None:intergenic 20.0%
!! ACTTTCTCATATAAAATTGT+CGG + chr4_4:29133183-29133202 Msa0677040:intron 20.0%
!! ATCATAAAAAAAAGACAGAA+AGG + chr4_4:29133345-29133364 Msa0677040:intron 20.0%
!! AACTATTTGACAAATAATTC+AGG + chr4_4:29134019-29134038 Msa0677040:intron 20.0%
!! TTAGTTTCATTATTGCTAAT+TGG - chr4_4:29134179-29134198 None:intergenic 20.0%
!! TTAGCAATAATGAAACTAAA+AGG + chr4_4:29134180-29134199 Msa0677040:intron 20.0%
!! AAAGGTAATGATTAATACAA+AGG - chr4_4:29134513-29134532 None:intergenic 20.0%
!! AAATCAGTTAAAAGGAAAAA+AGG - chr4_4:29134896-29134915 None:intergenic 20.0%
!!! TAGCTTTTAGTATTACATTT+AGG + chr4_4:29134971-29134990 Msa0677040:intron 20.0%
!! AATCAACACCTTTATAAATA+TGG - chr4_4:29135026-29135045 None:intergenic 20.0%
!! AAAATAAATCGAATTTCAGT+AGG - chr4_4:29135426-29135445 None:intergenic 20.0%
!!! GATTTATTTTCCTTTTTGTA+GGG + chr4_4:29135436-29135455 Msa0677040:intron 20.0%
!! AAAACTTCCATTAAAAGTGT+GGG - chr4_4:29132294-29132313 None:intergenic 25.0%
!! TTTTCTTTATGCTGTTAGAT+TGG + chr4_4:29132699-29132718 Msa0677040:intron 25.0%
!! ATTGAATCTCATGGTATTTT+AGG + chr4_4:29132728-29132747 Msa0677040:intron 25.0%
!!! ATAAAAATTTGTTGATGGCA+AGG - chr4_4:29132821-29132840 None:intergenic 25.0%
!!! ATTTTTCACTCCTTTGTTTT+AGG + chr4_4:29132859-29132878 Msa0677040:intron 25.0%
! AATTACAGTACCTAAAACAA+AGG - chr4_4:29132872-29132891 None:intergenic 25.0%
! GTGTATAAGAAAACTAAAAC+CGG - chr4_4:29132912-29132931 None:intergenic 25.0%
!!! GTTTTAGTTTTCTTATACAC+TGG + chr4_4:29132912-29132931 Msa0677040:intron 25.0%
!!! TTTAGTTTTCTTATACACTG+GGG + chr4_4:29132914-29132933 Msa0677040:intron 25.0%
!!! GAAGATTTAAGACAAGTTTT+TGG + chr4_4:29133376-29133395 Msa0677040:intron 25.0%
! ATGTTACTATAACCCTAAAT+CGG - chr4_4:29133495-29133514 None:intergenic 25.0%
!! TCAACAATTTTCAATTGTCT+AGG + chr4_4:29133616-29133635 Msa0677040:intron 25.0%
! ATATTAGTGTTTAATGAGCT+AGG - chr4_4:29133756-29133775 None:intergenic 25.0%
!! CATTTGAAAAAGTTTTTGTG+AGG - chr4_4:29133819-29133838 None:intergenic 25.0%
!!! CAAAAACTTTTTCAAATGTG+CGG + chr4_4:29133821-29133840 Msa0677040:intron 25.0%
!! GCTAATTGGTAATAAAGAAA+AGG - chr4_4:29134165-29134184 None:intergenic 25.0%
! TTAGTCACAACCATTATTAT+TGG - chr4_4:29134311-29134330 None:intergenic 25.0%
! AATAATAATGGTTGTGACTA+AGG + chr4_4:29134310-29134329 Msa0677040:CDS 25.0%
! TAAAAGAATGTTCTCTTTGT+AGG + chr4_4:29134398-29134417 Msa0677040:intron 25.0%
! ATACTGATCTTAATTGTGTT+GGG + chr4_4:29134439-29134458 Msa0677040:CDS 25.0%
!! GCAAATTTCTCATACATTTT+GGG + chr4_4:29134602-29134621 Msa0677040:intron 25.0%
!! AAGGTTTGTTTATCCTTTAA+GGG + chr4_4:29134867-29134886 Msa0677040:intron 25.0%
! AAGAACTGAAATCAGTTAAA+AGG - chr4_4:29134904-29134923 None:intergenic 25.0%
!! AAATCATCAAGAGATTTTCT+GGG + chr4_4:29134932-29134951 Msa0677040:intron 25.0%
! ACTGTCATCCATATTTATAA+AGG + chr4_4:29135015-29135034 Msa0677040:intron 25.0%
! AGAAAATACCATGATGATTT+AGG + chr4_4:29135319-29135338 Msa0677040:intron 25.0%
! GAAAATACCATGATGATTTA+GGG + chr4_4:29135320-29135339 Msa0677040:intron 25.0%
!!! CGATTTATTTTCCTTTTTGT+AGG + chr4_4:29135435-29135454 Msa0677040:intron 25.0%
TCATTATCGGAAGTTTGTAA+AGG - chr4_4:29132107-29132126 None:intergenic 30.0%
ACAAACCAATTCATAGGTTT+CGG - chr4_4:29132150-29132169 None:intergenic 30.0%
AGAGATACAAACCAATTCAT+AGG - chr4_4:29132156-29132175 None:intergenic 30.0%
AATTATTACATGTCGGTGTA+TGG + chr4_4:29132224-29132243 Msa0677040:intron 30.0%
CAAAACTTCCATTAAAAGTG+TGG - chr4_4:29132295-29132314 None:intergenic 30.0%
CTTCATAGCTTCTATCTTAT+CGG + chr4_4:29132401-29132420 Msa0677040:intron 30.0%
! GGAACATTAAAATTTTCCAC+TGG + chr4_4:29132422-29132441 Msa0677040:intron 30.0%
AGCTTAAAACTGTTCTATGT+GGG + chr4_4:29132509-29132528 Msa0677040:CDS 30.0%
! CAATTTTTGTCGAAGATCTT+CGG - chr4_4:29132620-29132639 None:intergenic 30.0%
CAATTTGACAATTAGAGCTT+TGG - chr4_4:29132659-29132678 None:intergenic 30.0%
! CAAAGCTCTAATTGTCAAAT+TGG + chr4_4:29132657-29132676 Msa0677040:CDS 30.0%
TGGATAAGAATTGAATCTCA+TGG + chr4_4:29132719-29132738 Msa0677040:intron 30.0%
! GAAAATCCAGATACTTTTGT+AGG + chr4_4:29132750-29132769 Msa0677040:intron 30.0%
!! AAAATGCCTACAAAAGTATC+TGG - chr4_4:29132759-29132778 None:intergenic 30.0%
GTAGTCATGATTTATGGATA+AGG - chr4_4:29133092-29133111 None:intergenic 30.0%
GTGATCTTAATAGAAAACAG+AGG + chr4_4:29133131-29133150 Msa0677040:intron 30.0%
!! CTCAAGACTTCTTTTGAAAA+GGG - chr4_4:29133264-29133283 None:intergenic 30.0%
!! ACTCAAGACTTCTTTTGAAA+AGG - chr4_4:29133265-29133284 None:intergenic 30.0%
AAGTCTTGAGTTTATACAGT+TGG + chr4_4:29133274-29133293 Msa0677040:intron 30.0%
TATGAAATGTGCGTCTAAAA+TGG + chr4_4:29133415-29133434 Msa0677040:intron 30.0%
CGTAGGTGAAATATTAACTA+AGG + chr4_4:29133642-29133661 Msa0677040:intron 30.0%
!! AAGTTTTTGTGAGGTTGATT+TGG - chr4_4:29133810-29133829 None:intergenic 30.0%
CCAAGTACAATTTGTAACAT+AGG - chr4_4:29133953-29133972 None:intergenic 30.0%
CCTATGTTACAAATTGTACT+TGG + chr4_4:29133950-29133969 Msa0677040:intron 30.0%
ATGTTACAAATTGTACTTGG+AGG + chr4_4:29133953-29133972 Msa0677040:intron 30.0%
! TGAATAATCTGACTTGACTT+TGG + chr4_4:29133984-29134003 Msa0677040:intron 30.0%
AGGCTATGCAAACAAATTAA+TGG + chr4_4:29134039-29134058 Msa0677040:intron 30.0%
!!! TACGCTCTAATTTTTTTCGA+TGG + chr4_4:29134068-29134087 Msa0677040:intron 30.0%
AATATTGGACTCTTAGCTAA+CGG - chr4_4:29134099-29134118 None:intergenic 30.0%
!! GTTGATATTGTTGACTTCAA+TGG + chr4_4:29134245-29134264 Msa0677040:CDS 30.0%
! TGGTGCTAATCCAATAATAA+TGG + chr4_4:29134298-29134317 Msa0677040:CDS 30.0%
CAATTAAGATCAGTATCTCT+TGG - chr4_4:29134435-29134454 None:intergenic 30.0%
GATACTGATCTTAATTGTGT+TGG + chr4_4:29134438-29134457 Msa0677040:CDS 30.0%
TACTGATCTTAATTGTGTTG+GGG + chr4_4:29134440-29134459 Msa0677040:CDS 30.0%
CCACAAATTAGTAACTTCAA+AGG - chr4_4:29134531-29134550 None:intergenic 30.0%
!! CCTTTGAAGTTACTAATTTG+TGG + chr4_4:29134528-29134547 Msa0677040:intron 30.0%
GTTAGAATTTAAGAGTGAGA+AGG + chr4_4:29134580-29134599 Msa0677040:intron 30.0%
! GGCAAATTTCTCATACATTT+TGG + chr4_4:29134601-29134620 Msa0677040:intron 30.0%
! ATGATTTTGAACTTGTGAGA+TGG - chr4_4:29134803-29134822 None:intergenic 30.0%
TCTCACAAGTTCAAAATCAT+TGG + chr4_4:29134803-29134822 Msa0677040:CDS 30.0%
ACAAGTTCAAAATCATTGGT+AGG + chr4_4:29134807-29134826 Msa0677040:CDS 30.0%
AAATCATTGGTAGGAATAAC+TGG + chr4_4:29134816-29134835 Msa0677040:CDS 30.0%
! GAAGGTTTGTTTATCCTTTA+AGG + chr4_4:29134866-29134885 Msa0677040:intron 30.0%
! GAAATCATCAAGAGATTTTC+TGG + chr4_4:29134931-29134950 Msa0677040:intron 30.0%
!!! AGGAATCTTTTTTGCATTTC+AGG + chr4_4:29135084-29135103 Msa0677040:intron 30.0%
AATGAACTTGTCAAATGTCA+AGG + chr4_4:29135109-29135128 Msa0677040:intron 30.0%
ATGAACTTGTCAAATGTCAA+GGG + chr4_4:29135110-29135129 Msa0677040:intron 30.0%
! TTTCCTCTTGTCAAAAGTAT+TGG + chr4_4:29135202-29135221 Msa0677040:intron 30.0%
! TTTCCAATACTTTTGACAAG+AGG - chr4_4:29135208-29135227 None:intergenic 30.0%
AGGTGTTAAGAAAGTGGATA+GGG - chr4_4:29131826-29131845 None:intergenic 35.0%
!! AGAAAGAGGTGTTAAGAAAG+TGG - chr4_4:29131832-29131851 None:intergenic 35.0%
TGTGAATTTGAGGGAATTTG+GGG - chr4_4:29131863-29131882 None:intergenic 35.0%
GTGTGAATTTGAGGGAATTT+GGG - chr4_4:29131864-29131883 None:intergenic 35.0%
!! AAGGTTTGGTGTGAATTTGA+GGG - chr4_4:29131872-29131891 None:intergenic 35.0%
AATTCACAGAGAATGAGACA+AGG - chr4_4:29131891-29131910 None:intergenic 35.0%
! TACTGTTGTTGTTCTGTTTG+AGG - chr4_4:29132022-29132041 None:intergenic 35.0%
ACAGCAATGGAAGATTTAAG+AGG - chr4_4:29132059-29132078 None:intergenic 35.0%
AGATTGCTTCTATCCTATCT+AGG + chr4_4:29132267-29132286 Msa0677040:intron 35.0%
AAGATAGAAGCTATGAAGCA+CGG - chr4_4:29132399-29132418 None:intergenic 35.0%
TGTAATTCAGAAACAACCAG+TGG - chr4_4:29132441-29132460 None:intergenic 35.0%
!!! CACATAGAACAGTTTTAAGC+TGG - chr4_4:29132510-29132529 None:intergenic 35.0%
CAGCTTAAAACTGTTCTATG+TGG + chr4_4:29132508-29132527 Msa0677040:CDS 35.0%
TTAAAACTGTTCTATGTGGG+CGG + chr4_4:29132512-29132531 Msa0677040:CDS 35.0%
! TTGCATTTAAAACGAGTCTC+CGG + chr4_4:29132890-29132909 Msa0677040:intron 35.0%
TGTGTGACTGATGTAAATTC+CGG + chr4_4:29132966-29132985 Msa0677040:intron 35.0%
AGGAATCATACTCATCATTC+CGG - chr4_4:29132988-29133007 None:intergenic 35.0%
ACGCACATTTCATACTTTCA+GGG - chr4_4:29133409-29133428 None:intergenic 35.0%
! AATGTGCGTCTAAAATGGAT+TGG + chr4_4:29133420-29133439 Msa0677040:intron 35.0%
TTAGTATGCTCGCTGATATT+TGG + chr4_4:29133573-29133592 Msa0677040:intron 35.0%
TTCAATTGTCTAGGTTTCGT+AGG + chr4_4:29133625-29133644 Msa0677040:intron 35.0%
TTAGTGTTTAATGAGCTAGG+AGG - chr4_4:29133753-29133772 None:intergenic 35.0%
!!! GAATGCTAGTTTTCAGCAAT+TGG + chr4_4:29133857-29133876 Msa0677040:intron 35.0%
! GTTTTCAGCAATTGGATGAT+CGG + chr4_4:29133865-29133884 Msa0677040:intron 35.0%
! AAATTGTACTTGGAGGCTTT+TGG + chr4_4:29133960-29133979 Msa0677040:intron 35.0%
!! TCTGACTTGACTTTGGAATT+TGG + chr4_4:29133991-29134010 Msa0677040:intron 35.0%
TTGTTGAGATAACCACTTCT+AGG + chr4_4:29134223-29134242 Msa0677040:intron 35.0%
CAACAATATCAACCTAGAAG+TGG - chr4_4:29134238-29134257 None:intergenic 35.0%
ATGGTTGTGACTAAGGTAAT+AGG + chr4_4:29134317-29134336 Msa0677040:intron 35.0%
! CTAAGGTAATAGGACGTTTT+TGG + chr4_4:29134327-29134346 Msa0677040:intron 35.0%
TAAGATCAGTATCTCTTGGA+AGG - chr4_4:29134431-29134450 None:intergenic 35.0%
ATCTTAATTGTGTTGGGGAT+TGG + chr4_4:29134445-29134464 Msa0677040:CDS 35.0%
TCTTAATTGTGTTGGGGATT+GGG + chr4_4:29134446-29134465 Msa0677040:CDS 35.0%
TACCATGTTGTTCAGTTATC+TGG + chr4_4:29134556-29134575 Msa0677040:intron 35.0%
ACTGCAATGAATACAAGCAA+TGG - chr4_4:29134769-29134788 None:intergenic 35.0%
AGAAATCCAGAAAGAGAAGA+AGG + chr4_4:29134848-29134867 Msa0677040:CDS 35.0%
AACAAACCTTCTTCTCTTTC+TGG - chr4_4:29134857-29134876 None:intergenic 35.0%
TAGGATGACAAACTTTCTGT+CGG + chr4_4:29134990-29135009 Msa0677040:intron 35.0%
TTCCTACTGAGTATCTCAAA+AGG - chr4_4:29135150-29135169 None:intergenic 35.0%
ATGCAGATGCAAAGACAATT+TGG - chr4_4:29135269-29135288 None:intergenic 35.0%
AACATCTCTTCCCTACAAAA+AGG - chr4_4:29135449-29135468 None:intergenic 35.0%
! GAGGTGTTAAGAAAGTGGAT+AGG - chr4_4:29131827-29131846 None:intergenic 40.0%
!! TTTGAGGGAATTTGGGGTTT+TGG - chr4_4:29131857-29131876 None:intergenic 40.0%
GGTGTGAATTTGAGGGAATT+TGG - chr4_4:29131865-29131884 None:intergenic 40.0%
!! CAAGGTTTGGTGTGAATTTG+AGG - chr4_4:29131873-29131892 None:intergenic 40.0%
ACAGAGAATGAGACAAGGTT+TGG - chr4_4:29131886-29131905 None:intergenic 40.0%
GTTCTGTTTGAGGATGAGAT+TGG - chr4_4:29132012-29132031 None:intergenic 40.0%
!! AAATCCAGGAGCGTCATTAT+CGG - chr4_4:29132120-29132139 None:intergenic 40.0%
CAATCTATGAAGCACAGACA+CGG - chr4_4:29132253-29132272 None:intergenic 40.0%
! TAAAAGTGTGGGTCCTAGAT+AGG - chr4_4:29132283-29132302 None:intergenic 40.0%
!! TCTAGGACCCACACTTTTAA+TGG + chr4_4:29132284-29132303 Msa0677040:intron 40.0%
TTTCACCATGAGACAAAAGC+TGG - chr4_4:29132540-29132559 None:intergenic 40.0%
GGTGAAATGATAACTGCTGT+TGG + chr4_4:29132553-29132572 Msa0677040:CDS 40.0%
GAAATGATAACTGCTGTTGG+AGG + chr4_4:29132556-29132575 Msa0677040:CDS 40.0%
! TACATGTTTTTCCGAACCAG+TGG + chr4_4:29133212-29133231 Msa0677040:intron 40.0%
! TTTTTGTGACACACTACCAC+TGG - chr4_4:29133231-29133250 None:intergenic 40.0%
GACGCACATTTCATACTTTC+AGG - chr4_4:29133410-29133429 None:intergenic 40.0%
ATACCTTCCTGATCCGATTT+AGG + chr4_4:29133479-29133498 Msa0677040:intron 40.0%
TACCTTCCTGATCCGATTTA+GGG + chr4_4:29133480-29133499 Msa0677040:intron 40.0%
CTATAACCCTAAATCGGATC+AGG - chr4_4:29133489-29133508 None:intergenic 40.0%
AGATTCGTATCGAGGAAGTA+AGG - chr4_4:29133547-29133566 None:intergenic 40.0%
TACTTCCTCGATACGAATCT+AGG + chr4_4:29133547-29133566 Msa0677040:intron 40.0%
AAATGCCTAGATTCGTATCG+AGG - chr4_4:29133555-29133574 None:intergenic 40.0%
ATGCTCGCTGATATTTGGTA+TGG + chr4_4:29133578-29133597 Msa0677040:intron 40.0%
!! TGATCGGTGGTTGATAAAAC+TGG + chr4_4:29133881-29133900 Msa0677040:intron 40.0%
CACCAGATAACTGAACAACA+TGG - chr4_4:29134561-29134580 None:intergenic 40.0%
GGAAAAAAGGTGACCCTTAA+AGG - chr4_4:29134883-29134902 None:intergenic 40.0%
!!! AGCCTTTTGAGATACTCAGT+AGG + chr4_4:29135145-29135164 Msa0677040:intron 40.0%
! ACCATGATGATTTAGGGCTA+AGG + chr4_4:29135326-29135345 Msa0677040:intron 40.0%
TCCTTAGCCCTAAATCATCA+TGG - chr4_4:29135330-29135349 None:intergenic 40.0%
!!! TTGGGGTTTTGGAGAGAAAG+AGG - chr4_4:29131846-29131865 None:intergenic 45.0%
TCTGGTAAGCGAGATTTGGA+AGG - chr4_4:29131921-29131940 None:intergenic 45.0%
TCCAAATCTCGCTTACCAGA+AGG + chr4_4:29131921-29131940 Msa0677040:CDS 45.0%
TGGTTGCTTCAAATGACTGC+TGG - chr4_4:29131992-29132011 None:intergenic 45.0%
ATAGCAAGAAGCGACAGCAA+TGG - chr4_4:29132072-29132091 None:intergenic 45.0%
! ATTGCTGTCGCTTCTTGCTA+TGG + chr4_4:29132071-29132090 Msa0677040:CDS 45.0%
CCAATTCATAGGTTTCGGAG+AGG - chr4_4:29132145-29132164 None:intergenic 45.0%
CCTCTCCGAAACCTATGAAT+TGG + chr4_4:29132142-29132161 Msa0677040:intron 45.0%
TATGAAGCACGGACACAAAC+AGG - chr4_4:29132388-29132407 None:intergenic 45.0%
ATAACTGCTGTTGGAGGACA+TGG + chr4_4:29132562-29132581 Msa0677040:CDS 45.0%
AACCCTAAATCGGATCAGGA+AGG - chr4_4:29133485-29133504 None:intergenic 45.0%
TTCAGCAATTGGATGATCGG+TGG + chr4_4:29133868-29133887 Msa0677040:intron 45.0%
CTTTGCATCTGCATTCTGCA+CGG + chr4_4:29135275-29135294 Msa0677040:intron 45.0%
TTTGCATCTGCATTCTGCAC+GGG + chr4_4:29135276-29135295 Msa0677040:intron 45.0%
!!! ATATTTTTTATGTAATATTT+AGG + chr4_4:29133669-29133688 Msa0677040:intron 5.0%
GCCTTCTGGTAAGCGAGATT+TGG - chr4_4:29131925-29131944 None:intergenic 50.0%
ACTTCCGATAATGACGCTCC+TGG + chr4_4:29132113-29132132 Msa0677040:CDS 50.0%
GTTTCGGAGAGGACAAATCC+AGG - chr4_4:29132134-29132153 None:intergenic 50.0%
! GTGACACACTACCACTGGTT+CGG - chr4_4:29133226-29133245 None:intergenic 50.0%
ACCAGCAAGATCTCTCACTC+GGG - chr4_4:29134282-29134301 None:intergenic 50.0%
CACCAGCAAGATCTCTCACT+CGG - chr4_4:29134283-29134302 None:intergenic 50.0%
! TGTTGGGGATTGGGTTGTAG+AGG + chr4_4:29134455-29134474 Msa0677040:CDS 50.0%
! TCTCGCTTACCAGAAGGCAC+CGG + chr4_4:29131927-29131946 Msa0677040:CDS 55.0%
AGGAACTTCTCGCCTGGTGA+CGG - chr4_4:29131963-29131982 None:intergenic 55.0%
CAAATGACTGCTGGCGTTCG+AGG - chr4_4:29131983-29132002 None:intergenic 55.0%
! GTCGCTTCTTGCTATGGCTG+TGG + chr4_4:29132077-29132096 Msa0677040:CDS 55.0%
!! CGGTGCCAGCTTTTGTCTCA+TGG + chr4_4:29132532-29132551 Msa0677040:CDS 55.0%
ACTGCTGTTGGAGGACATGG+AGG + chr4_4:29132565-29132584 Msa0677040:CDS 55.0%
GGAGGACATGGAGGATACTC+TGG + chr4_4:29132574-29132593 Msa0677040:CDS 55.0%
GGACATGGAGGATACTCTGG+CGG + chr4_4:29132577-29132596 Msa0677040:CDS 55.0%
ACACTGGGGTTTAGCGCAAG+TGG + chr4_4:29132928-29132947 Msa0677040:intron 55.0%
TGGGGTTTAGCGCAAGTGGT+TGG + chr4_4:29132932-29132951 Msa0677040:intron 55.0%
GGGGTTTAGCGCAAGTGGTT+GGG + chr4_4:29132933-29132952 Msa0677040:intron 55.0%
GGGTTTAGCGCAAGTGGTTG+GGG + chr4_4:29132934-29132953 Msa0677040:intron 55.0%
TCCCGAGTGAGAGATCTTGC+TGG + chr4_4:29134278-29134297 Msa0677040:CDS 55.0%
CGTTCGAGGAACTTCTCGCC+TGG - chr4_4:29131969-29131988 None:intergenic 60.0%
!! TGGTGACGGAGCAGCGGCTC+CGG - chr4_4:29131949-29131968 None:intergenic 70.0%
!! CTCGCCTGGTGACGGAGCAG+CGG - chr4_4:29131955-29131974 None:intergenic 70.0%
GCAGCGGCTCCGGTGCCTTC+TGG - chr4_4:29131939-29131958 None:intergenic 75.0%
GGAGCCGCTGCTCCGTCACC+AGG + chr4_4:29131948-29131967 Msa0677040:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 29131810 29135477 29131810 ID=Msa0677040;Name=Msa0677040
chr4_4 mRNA 29131810 29135477 29131810 ID=Msa0677040-mRNA-1;Parent=Msa0677040;Name=Msa0677040-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0.16|0.14|0.85|0.66|0.57|7|0|258
chr4_4 exon 29131810 29132038 29131810 ID=Msa0677040-mRNA-1:exon:7499;Parent=Msa0677040-mRNA-1
chr4_4 exon 29132051 29132139 29132051 ID=Msa0677040-mRNA-1:exon:7500;Parent=Msa0677040-mRNA-1
chr4_4 exon 29132493 29132678 29132493 ID=Msa0677040-mRNA-1:exon:7501;Parent=Msa0677040-mRNA-1
chr4_4 exon 29134245 29134331 29134245 ID=Msa0677040-mRNA-1:exon:7502;Parent=Msa0677040-mRNA-1
chr4_4 exon 29134420 29134499 29134420 ID=Msa0677040-mRNA-1:exon:7503;Parent=Msa0677040-mRNA-1
chr4_4 exon 29134788 29134869 29134788 ID=Msa0677040-mRNA-1:exon:7504;Parent=Msa0677040-mRNA-1
chr4_4 exon 29135457 29135477 29135457 ID=Msa0677040-mRNA-1:exon:7505;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29131810 29132038 29131810 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29132051 29132139 29132051 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29132493 29132678 29132493 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29134245 29134331 29134245 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29134420 29134499 29134420 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29134788 29134869 29134788 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
chr4_4 CDS 29135457 29135477 29135457 ID=Msa0677040-mRNA-1:cds;Parent=Msa0677040-mRNA-1
Gene Sequence

>Msa0677040

ATGGCGCTTAAAACCCTATCCACTTTCTTAACACCTCTTTCTCTCCAAAACCCCAAATTCCCTCAAATTCACACCAAACCTTGTCTCATTCTCTGTGAATTATCTCGTCCTTCCAAATCTCGCTTACCAGAAGGCACCGGAGCCGCTGCTCCGTCACCAGGCGAGAAGTTCCTCGAACGCCAGCAGTCATTTGAAGCAACCAATCTCATCCTCAAACAGAACAACAACAAGAAGCCTCTTAAATCTTCCATTGCTGTCGCTTCTTGCTATGGCTGTGGCGCTCCTTTACAAACTTCCGATAATGACGCTCCTGGATTTAAGAAGAAACATCACCAGCTTAAAACTGTTCTATGTGGGCGGTGCCAGCTTTTGTCTCATGGTGAAATGATAACTGCTGTTGGAGGACATGGAGGATACTCTGGCGGAAAACAGTTCATTACTGCCGAAGATCTTCGACAAAAATTGTCTCATTTGCGTGATGCCAAAGCTCTAATTGTCAAATTGGTTGATATTGTTGACTTCAATGGCAGTTTTTTGTCCCGAGTGAGAGATCTTGCTGGTGCTAATCCAATAATAATGGTTGTGACTAAGGTTGATCTCCTTCCAAGAGATACTGATCTTAATTGTGTTGGGGATTGGGTTGTAGAGGCTATCACAAGAAAGAAACTAAATGTTCTCAGTGTCCATCTCACAAGTTCAAAATCATTGGTAGGAATAACTGGAGTGATATCAGAAATCCAGAAAGAGAAGAAGGGAAGAGATGTTTACATTCTG

Protein sequence

>Msa0677040

MALKTLSTFLTPLSLQNPKFPQIHTKPCLILCELSRPSKSRLPEGTGAAAPSPGEKFLERQQSFEATNLILKQNNNKKPLKSSIAVASCYGCGAPLQTSDNDAPGFKKKHHQLKTVLCGRCQLLSHGEMITAVGGHGGYSGGKQFITAEDLRQKLSHLRDAKALIVKLVDIVDFNGSFLSRVRDLAGANPIIMVVTKVDLLPRDTDLNCVGDWVVEAITRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKGRDVYIL