AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479230 MtrunA17_Chr3g0141951 82.955 352 10 2 1 302 1 352 0.0 568
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479230 AT1G45110.1 68.880 241 75 0 60 300 97 337 1.62e-122 354

Find 122 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTGCGTTGCGGAAATT+TGG 0.163996 3_3:+84113138 Msa0479230:CDS
ATTACAAGTTTATTATTATC+TGG 0.272068 3_3:-84109721 None:intergenic
GCCTTCAAGATCTAAATCTA+TGG 0.295093 3_3:-84113472 None:intergenic
TGCAAAAGACAGGTGAAAAT+AGG 0.300653 3_3:+84109453 Msa0479230:five_prime_UTR
CTAAGAGAATTAATTGAAAA+TGG 0.305796 3_3:+84112201 Msa0479230:CDS
AGATGGAGTTCGGAGGATAA+AGG 0.316784 3_3:-84109688 None:intergenic
TGCATGCCCTTCAATCAATA+TGG 0.318102 3_3:-84112133 None:intergenic
CAGCATTCACATTGTTTCCT+TGG 0.323869 3_3:+84113445 Msa0479230:three_prime_UTR
GCAAAAGACAGGTGAAAATA+GGG 0.327210 3_3:+84109454 Msa0479230:five_prime_UTR
ACGGTATTCGCTTCGGATTA+TGG 0.329322 3_3:-84109511 None:intergenic
ACGAATAGAAAATTCTTTGC+TGG 0.338729 3_3:-84112091 None:intergenic
CACTTGCGTTGCGGAAATTT+GGG 0.343746 3_3:+84113139 Msa0479230:CDS
TCCACTGATGAATTTACATT+TGG 0.349806 3_3:+84110554 Msa0479230:CDS
GGGGAAAAGGTAAGTTGCTT+TGG 0.355232 3_3:-84109667 None:intergenic
CCCATAGATTTAGATCTTGA+AGG 0.361790 3_3:+84113471 Msa0479230:three_prime_UTR
TGTACAAACTTGATCACTTA+AGG 0.363904 3_3:+84113524 Msa0479230:three_prime_UTR
ATGGGTTGTTAAATCCAAAA+AGG 0.364319 3_3:+84113574 Msa0479230:three_prime_UTR
TTAGAGTGGCAGATTATTCC+TGG 0.370923 3_3:+84113188 Msa0479230:exon
ACTCGGGATCAAGAAGAAAA+AGG 0.373239 3_3:+84110688 Msa0479230:CDS
TGGTAAACCATTCCTCTTGA+TGG 0.374035 3_3:-84113379 None:intergenic
CTTCTTGATCCCGAGTGCTT+TGG 0.381141 3_3:-84110681 None:intergenic
AATCCCAGGTCCATGTGCTT+TGG 0.393976 3_3:+84110505 Msa0479230:CDS
GATGGAGTTCGGAGGATAAA+GGG 0.399268 3_3:-84109687 None:intergenic
AACTCTCTTGGTCAAGTGCT+GGG 0.399592 3_3:-84113658 None:intergenic
CCTATTGTCATCCTAGTTGA+AGG 0.407805 3_3:-84113353 None:intergenic
AGTGCTGGGGAAAGAACATC+TGG 0.411752 3_3:-84113644 None:intergenic
CCTTCAACTAGGATGACAAT+AGG 0.426130 3_3:+84113353 Msa0479230:three_prime_UTR
GGACCTGGGATTGGAACAAC+AGG 0.427981 3_3:-84110494 None:intergenic
TTGAAGGCATACTCAGCAAT+AGG 0.430963 3_3:+84113487 Msa0479230:three_prime_UTR
GGCAGTGGAAAACGCCATCC+AGG 0.443924 3_3:-84109608 None:intergenic
CTTTCTCAGTTTCTTGAAGA+GGG 0.449860 3_3:+84110768 Msa0479230:CDS
GGTATCGGCTCTTTCTGCCT+CGG 0.453758 3_3:+84110526 Msa0479230:CDS
GACCAAGAGAGTTCGTCATT+AGG 0.455887 3_3:+84113668 Msa0479230:three_prime_UTR
AGGTCCATGTGCTTTGGTAT+CGG 0.460351 3_3:+84110511 Msa0479230:CDS
GTATCGGCTCTTTCTGCCTC+GGG 0.462242 3_3:+84110527 Msa0479230:CDS
GAACTCTCTTGGTCAAGTGC+TGG 0.463455 3_3:-84113659 None:intergenic
CACCTAATGACGAACTCTCT+TGG 0.471403 3_3:-84113670 None:intergenic
TTCCAATTTCAATAGAAAAG+AGG 0.472475 3_3:+84109562 Msa0479230:five_prime_UTR
AATATGGTAAGTTCTCCCTT+TGG 0.477519 3_3:-84112117 None:intergenic
CAGTGGAAGAGGTGCGGCAG+TGG 0.480861 3_3:-84109623 None:intergenic
AAAGCACATGGACCTGGGAT+TGG 0.488329 3_3:-84110503 None:intergenic
GAACTTACCATATTGATTGA+AGG 0.490717 3_3:+84112126 Msa0479230:CDS
TCCAATTTCAATAGAAAAGA+GGG 0.492198 3_3:+84109563 Msa0479230:five_prime_UTR
ATAAGTGACGCTGGAACGCC+TGG 0.495165 3_3:+84110332 Msa0479230:CDS
AAAGGTAAGTTGCTTTGGAA+TGG 0.495257 3_3:-84109662 None:intergenic
AAAGAGGGAAAATGTTGCTT+CGG 0.496095 3_3:+84109578 Msa0479230:exon
TTCGGAGGATAAAGGGGAAA+AGG 0.500366 3_3:-84109680 None:intergenic
GTTCCTGTTGTTCCAATCCC+AGG 0.500390 3_3:+84110491 Msa0479230:CDS
AGATGGAATTTCCTCAACTT+AGG 0.500826 3_3:-84113602 None:intergenic
ATAAAGTTTCATAGAGTCAT+GGG 0.503962 3_3:+84113556 Msa0479230:three_prime_UTR
ACGCCTGGTATCAGTGATCC+TGG 0.507533 3_3:+84110347 Msa0479230:CDS
AAGTTGCTTTGGAATGGAAA+AGG 0.508393 3_3:-84109656 None:intergenic
TATAAAGTTTCATAGAGTCA+TGG 0.508859 3_3:+84113555 Msa0479230:three_prime_UTR
CATGGCTTCAGCAGAGCAAA+CGG 0.510069 3_3:+84110713 Msa0479230:CDS
GAAGAAGAATACAGTGGAAG+AGG 0.520210 3_3:-84109634 None:intergenic
CAGTGATCCTGGTATGGAGT+TGG 0.526144 3_3:+84110358 Msa0479230:CDS
CAAATTCAATGAATCACAAA+GGG 0.528109 3_3:+84110262 Msa0479230:CDS
GATACCAAAGCACATGGACC+TGG 0.530974 3_3:-84110509 None:intergenic
GCTTTCTCAGTTTCTTGAAG+AGG 0.533813 3_3:+84110767 Msa0479230:CDS
CCTTCAAGATCTAAATCTAT+GGG 0.537183 3_3:-84113471 None:intergenic
TGTTGCTTCGGCGATTACCC+TGG 0.538601 3_3:+84109590 Msa0479230:CDS
TTCTCAAGCTCAATGTCCGA+TGG 0.538928 3_3:-84112174 None:intergenic
GAACAACTGCTGATCATGTA+TGG 0.540604 3_3:+84113408 Msa0479230:three_prime_UTR
TTCTAAAGTTGAACCTCCAT+CGG 0.541066 3_3:+84112158 Msa0479230:CDS
TACATGCCAATGCAAAAGAC+AGG 0.541519 3_3:+84109443 Msa0479230:five_prime_UTR
AAAGGGAACAACTTGTGCTC+AGG 0.542988 3_3:+84110279 Msa0479230:CDS
TGGTATCAGTGATCCTGGTA+TGG 0.543755 3_3:+84110352 Msa0479230:CDS
ATACTTACCAACTCCATACC+AGG 0.545915 3_3:-84110365 None:intergenic
ATGGAGTTCGGAGGATAAAG+GGG 0.547386 3_3:-84109686 None:intergenic
AACTTACCATATTGATTGAA+GGG 0.547874 3_3:+84112127 Msa0479230:CDS
TGTTGTTCAATCCTTCAACT+AGG 0.551038 3_3:+84113342 Msa0479230:three_prime_UTR
GCTTCGGCGATTACCCTGGA+TGG 0.551601 3_3:+84109594 Msa0479230:CDS
TGAATACAAGACGAGGGAGA+TGG 0.553184 3_3:-84113619 None:intergenic
ATTTGGGAAGCAACTTGAAG+TGG 0.553937 3_3:+84113155 Msa0479230:CDS
CGCACGCAGCATCTCAAACC+CGG 0.554576 3_3:+84109843 Msa0479230:CDS
TGGGAAGCAACTTGAAGTGG+AGG 0.557381 3_3:+84113158 Msa0479230:CDS
TGTTCCAACGAGATAAAGAC+CGG 0.559367 3_3:-84109862 None:intergenic
CTATATATTCACTTGCGTTG+CGG 0.562841 3_3:+84113130 Msa0479230:CDS
AGTCAAGGAACTACTACTCA+TGG 0.564499 3_3:-84113699 None:intergenic
ATCAGCAGTTGTTCAACAAG+TGG 0.565298 3_3:-84113399 None:intergenic
TATCTGGATGTTGAGTGAGA+TGG 0.568564 3_3:-84109705 None:intergenic
TCTAAATCTATGGGAAGCCA+AGG 0.570294 3_3:-84113462 None:intergenic
TAGGCTTCCATCAAGAGGAA+TGG 0.573879 3_3:+84113372 Msa0479230:three_prime_UTR
CTGATCATGTATGGTTCGGT+TGG 0.577367 3_3:+84113417 Msa0479230:three_prime_UTR
ATGTTGAGTGAGATGGAGTT+CGG 0.577685 3_3:-84109698 None:intergenic
TTGAAATTGGAACGCAAACG+CGG 0.583131 3_3:-84109551 None:intergenic
GGGAACAACTTGTGCTCAGG+AGG 0.587717 3_3:+84110282 Msa0479230:CDS
ACTCTCTTGGTCAAGTGCTG+GGG 0.592170 3_3:-84113657 None:intergenic
GTGGAGGATTCAAGTTAGAG+TGG 0.593043 3_3:+84113174 Msa0479230:exon
CAAGGAAACAATGTGAATGC+TGG 0.595372 3_3:-84113444 None:intergenic
ACAAATTCAATGAATCACAA+AGG 0.598902 3_3:+84110261 Msa0479230:CDS
GAAAAGGAAGAAGAATACAG+TGG 0.600108 3_3:-84109640 None:intergenic
ACTGCTGATCATGTATGGTT+CGG 0.611818 3_3:+84113413 Msa0479230:three_prime_UTR
GCAGTGGAAAACGCCATCCA+GGG 0.611925 3_3:-84109607 None:intergenic
AACTGAGAAAGCTTGTGAGG+AGG 0.612873 3_3:-84110756 None:intergenic
AATGACAAAGTTTCACGAAG+AGG 0.615304 3_3:+84111175 Msa0479230:CDS
GACAATAGGCTTCCATCAAG+AGG 0.621077 3_3:+84113367 Msa0479230:three_prime_UTR
AGAAACTGAGAAAGCTTGTG+AGG 0.623622 3_3:-84110759 None:intergenic
ACCAAATGTAAATTCATCAG+TGG 0.627138 3_3:-84110555 None:intergenic
CAAAAGACAGGTGAAAATAG+GGG 0.628940 3_3:+84109455 Msa0479230:five_prime_UTR
ATAAGAAGAACGCCTCAACT+CGG 0.629211 3_3:-84109482 None:intergenic
GTGGCACTTATAAGTGACGC+TGG 0.634936 3_3:+84110323 Msa0479230:CDS
ATACCAAAGCACATGGACCT+GGG 0.636160 3_3:-84110508 None:intergenic
ATACCAGGATCACTGATACC+AGG 0.638129 3_3:-84110350 None:intergenic
TCAAGCTCAATGTCCGATGG+AGG 0.640534 3_3:-84112171 None:intergenic
GTTGAAACAAGGTGAGATTG+TGG 0.644732 3_3:+84110304 Msa0479230:CDS
AATAGGGGTACACCGAGTTG+AGG 0.644850 3_3:+84109470 Msa0479230:five_prime_UTR
AGAATACAGTGGAAGAGGTG+CGG 0.646714 3_3:-84109629 None:intergenic
TATTTCTGAGATAAGAGTCA+AGG 0.647630 3_3:-84113714 None:intergenic
AAATGGCGAGAGTCTTTCCA+CGG 0.651793 3_3:+84112218 Msa0479230:CDS
ATGCAGGCCAAATTATGTGT+TGG 0.654583 3_3:+84110461 Msa0479230:intron
TTGAGTGAGATGGAGTTCGG+AGG 0.659766 3_3:-84109695 None:intergenic
ATTGGTAGCTGAAAGAACAT+CGG 0.668003 3_3:+84113095 Msa0479230:CDS
GTGCTCAGGAGGTTGAAACA+AGG 0.672276 3_3:+84110293 Msa0479230:CDS
TTCATCAGTGGATAAACCCG+AGG 0.672572 3_3:-84110543 None:intergenic
AAAAGGAAAAGCCTAAGTTG+AGG 0.674692 3_3:+84113591 Msa0479230:three_prime_UTR
AGAGCCGATACCAAAGCACA+TGG 0.677490 3_3:-84110515 None:intergenic
CTGGGATGAATACAAGACGA+GGG 0.701924 3_3:-84113625 None:intergenic
GTGCTGGGGAAAGAACATCT+GGG 0.702568 3_3:-84113643 None:intergenic
GTTCCAACGAGATAAAGACC+GGG 0.703315 3_3:-84109861 None:intergenic
GAGTGGCAGATTATTCCTGG+AGG 0.706671 3_3:+84113191 Msa0479230:exon
TCTGGGATGAATACAAGACG+AGG 0.737978 3_3:-84113626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAGTTTATCATAATAA+TGG - chr3_3:84111907-84111926 None:intergenic 10.0%
!! TGTTAAAAATAATCAAATTA+TGG + chr3_3:84112288-84112307 Msa0479230:intron 10.0%
!! ATTACAAGTTTATTATTATC+TGG - chr3_3:84109724-84109743 None:intergenic 15.0%
!!! TCATGAATTATTTTAATTGA+AGG + chr3_3:84111868-84111887 Msa0479230:intron 15.0%
!! AATAATCAAATTATGGAATA+TGG + chr3_3:84112295-84112314 Msa0479230:intron 15.0%
!!! TTGATTAAAAATCAATTTTG+AGG - chr3_3:84112610-84112629 None:intergenic 15.0%
!!! AAATTGATTTTTAATCAACT+TGG + chr3_3:84112612-84112631 Msa0479230:intron 15.0%
!! TGATATAAAAATGTATACAA+AGG + chr3_3:84113779-84113798 Msa0479230:three_prime_UTR 15.0%
!! GATATAAAAATGTATACAAA+GGG + chr3_3:84113780-84113799 Msa0479230:three_prime_UTR 15.0%
!!! GGATATTTTTATGTTTTTGA+CGG - chr3_3:84109533-84109552 None:intergenic 20.0%
!!! ACATTTTTCATTATGCATTT+TGG + chr3_3:84109924-84109943 Msa0479230:intron 20.0%
!! ACTAGAAAAAATACATTGAT+GGG - chr3_3:84110651-84110670 None:intergenic 20.0%
!!! ATCAATGTATTTTTTCTAGT+CGG + chr3_3:84110651-84110670 Msa0479230:intron 20.0%
!! CAACTCAAAAATATAAAAGT+GGG - chr3_3:84110917-84110936 None:intergenic 20.0%
!! CATAAGATGAATAAAATTCA+AGG - chr3_3:84111029-84111048 None:intergenic 20.0%
!!! CATGAAAAAGAAATTGTTTT+AGG + chr3_3:84111442-84111461 Msa0479230:intron 20.0%
!! TTGTTAAAATAAGAACAAAC+AGG - chr3_3:84111978-84111997 None:intergenic 20.0%
!! CTAAGAGAATTAATTGAAAA+TGG + chr3_3:84112201-84112220 Msa0479230:CDS 20.0%
!! TAAAATTGAATGTGTCTATT+GGG - chr3_3:84112253-84112272 None:intergenic 20.0%
!!! GTTAAAAGTAAAAAAGCATT+TGG + chr3_3:84112348-84112367 Msa0479230:intron 20.0%
!!! TTATTTGATATTAGCTTTCA+AGG - chr3_3:84112415-84112434 None:intergenic 20.0%
!!! TAATCATTTTGAAGTGAATA+TGG + chr3_3:84112443-84112462 Msa0479230:intron 20.0%
!!! AAATTTGTTGAGAATGAAAA+TGG - chr3_3:84112548-84112567 None:intergenic 20.0%
!!! TTTTGTTGAGAGTATTATAA+AGG + chr3_3:84112765-84112784 Msa0479230:intron 20.0%
!!! TTTGTTGAGAGTATTATAAA+GGG + chr3_3:84112766-84112785 Msa0479230:intron 20.0%
!! TGACAAAAATTAAGATATGT+GGG - chr3_3:84112855-84112874 None:intergenic 20.0%
!! TTGACAAAAATTAAGATATG+TGG - chr3_3:84112856-84112875 None:intergenic 20.0%
! TTCCAATTTCAATAGAAAAG+AGG + chr3_3:84109562-84109581 Msa0479230:five_prime_UTR 25.0%
! TCCAATTTCAATAGAAAAGA+GGG + chr3_3:84109563-84109582 Msa0479230:five_prime_UTR 25.0%
! ACAAATTCAATGAATCACAA+AGG + chr3_3:84110261-84110280 Msa0479230:CDS 25.0%
! CAAATTCAATGAATCACAAA+GGG + chr3_3:84110262-84110281 Msa0479230:CDS 25.0%
!! ATTTTCACCAACACATAATT+TGG - chr3_3:84110471-84110490 None:intergenic 25.0%
! GACTAGAAAAAATACATTGA+TGG - chr3_3:84110652-84110671 None:intergenic 25.0%
! ATTACGATTAAGGAAAAGTT+TGG - chr3_3:84110821-84110840 None:intergenic 25.0%
! CCAACTCAAAAATATAAAAG+TGG - chr3_3:84110918-84110937 None:intergenic 25.0%
!!! CCACTTTTATATTTTTGAGT+TGG + chr3_3:84110915-84110934 Msa0479230:intron 25.0%
! TCACAAAATTAGCAAATCAA+TGG - chr3_3:84110946-84110965 None:intergenic 25.0%
! CAAATCAAACAAACAGTTTA+AGG - chr3_3:84110993-84111012 None:intergenic 25.0%
! AGATGAATAAAATTCAAGGT+GGG - chr3_3:84111025-84111044 None:intergenic 25.0%
! AAGATGAATAAAATTCAAGG+TGG - chr3_3:84111026-84111045 None:intergenic 25.0%
!!! TGCTAATTATCTTATTTCTG+TGG + chr3_3:84111256-84111275 Msa0479230:intron 25.0%
!!! AGTACTTTTAATTTAACCAG+TGG + chr3_3:84111299-84111318 Msa0479230:intron 25.0%
!!! GTACTTTTAATTTAACCAGT+GGG + chr3_3:84111300-84111319 Msa0479230:intron 25.0%
! GCATATGAGTTAAAAAACTA+AGG - chr3_3:84111335-84111354 None:intergenic 25.0%
! TTAATTCATTCCATTAGTGT+TGG - chr3_3:84111357-84111376 None:intergenic 25.0%
! TGAGAAAAACAATAACATGA+TGG - chr3_3:84111424-84111443 None:intergenic 25.0%
! AATCGTTGAAAAAATTTAGC+AGG - chr3_3:84111469-84111488 None:intergenic 25.0%
!!! TTGATTTGTTTTCCATGATT+GGG + chr3_3:84111527-84111546 Msa0479230:intron 25.0%
! TCTCTTGTTAATGTAATGTA+CGG + chr3_3:84111583-84111602 Msa0479230:intron 25.0%
! TAAGGAATAAAAGAGAAAGT+TGG - chr3_3:84111677-84111696 None:intergenic 25.0%
!! TCTCTTTTATTCCTTAACTA+CGG + chr3_3:84111681-84111700 Msa0479230:intron 25.0%
!!! AACATAATCATTGCTTTTTG+CGG - chr3_3:84111806-84111825 None:intergenic 25.0%
! ATGAGTGATGTATATTCATT+GGG - chr3_3:84111852-84111871 None:intergenic 25.0%
!!! TTATTTTAACAACGTTCTCT+AGG + chr3_3:84111986-84112005 Msa0479230:intron 25.0%
!! AACTTACCATATTGATTGAA+GGG + chr3_3:84112127-84112146 Msa0479230:CDS 25.0%
! CTAAAATTGAATGTGTCTAT+TGG - chr3_3:84112254-84112273 None:intergenic 25.0%
! CATTTGGATTTCAACATATA+TGG + chr3_3:84112364-84112383 Msa0479230:intron 25.0%
!! TGGAAATATTTTCATAGCAT+AGG - chr3_3:84112528-84112547 None:intergenic 25.0%
!! AATTTGCTTAAGCTTATCTT+AGG + chr3_3:84112636-84112655 Msa0479230:intron 25.0%
!! ATTGACTCATGCTTATTAAT+TGG + chr3_3:84112994-84113013 Msa0479230:intron 25.0%
!!! ATGTTTTTAGGCTGTTAAAT+TGG + chr3_3:84113077-84113096 Msa0479230:intron 25.0%
!! TGTTAATTACAGAATGCTTT+TGG - chr3_3:84113289-84113308 None:intergenic 25.0%
! TATAAAGTTTCATAGAGTCA+TGG + chr3_3:84113555-84113574 Msa0479230:three_prime_UTR 25.0%
! ATAAAGTTTCATAGAGTCAT+GGG + chr3_3:84113556-84113575 Msa0479230:three_prime_UTR 25.0%
! TCCCTCTTTTCTATTGAAAT+TGG - chr3_3:84109567-84109586 None:intergenic 30.0%
! TCATTTTCGTTCCATTTTCT+AGG + chr3_3:84109745-84109764 Msa0479230:intron 30.0%
GAAAAGTAAAGCCTAGAAAA+TGG - chr3_3:84109759-84109778 None:intergenic 30.0%
AAAAACTGAGTGAATGTTGA+GGG - chr3_3:84109781-84109800 None:intergenic 30.0%
GAAAAATGTTTCATACCTGA+AGG - chr3_3:84109913-84109932 None:intergenic 30.0%
! AAACAACACTTAGCTCATTT+TGG + chr3_3:84110039-84110058 Msa0479230:intron 30.0%
TCCACTGATGAATTTACATT+TGG + chr3_3:84110554-84110573 Msa0479230:CDS 30.0%
ACCAAATGTAAATTCATCAG+TGG - chr3_3:84110558-84110577 None:intergenic 30.0%
AATTAACTGACTGAACGATA+TGG + chr3_3:84110578-84110597 Msa0479230:intron 30.0%
ATTAACTGACTGAACGATAT+GGG + chr3_3:84110579-84110598 Msa0479230:intron 30.0%
TAAGCATGCAATTACGATTA+AGG - chr3_3:84110831-84110850 None:intergenic 30.0%
AGAACATAGTACTTATGTTC+AGG - chr3_3:84110858-84110877 None:intergenic 30.0%
CTTCATTTGAATGATATTGC+AGG + chr3_3:84111132-84111151 Msa0479230:intron 30.0%
AATTTAACCAGTGGGAATAA+AGG + chr3_3:84111308-84111327 Msa0479230:intron 30.0%
CAATAACATGATGGTAAAGA+AGG - chr3_3:84111415-84111434 None:intergenic 30.0%
!!! CTTGATTTGTTTTCCATGAT+TGG + chr3_3:84111526-84111545 Msa0479230:intron 30.0%
! TTTTCTGTTTGTAACTTCTC+TGG + chr3_3:84111753-84111772 Msa0479230:intron 30.0%
CATGAGTGATGTATATTCAT+TGG - chr3_3:84111853-84111872 None:intergenic 30.0%
ATTAATTCCTGTCATAAGTG+TGG + chr3_3:84111925-84111944 Msa0479230:intron 30.0%
TTAATTCCTGTCATAAGTGT+GGG + chr3_3:84111926-84111945 Msa0479230:intron 30.0%
AATAAGAACAAACAGGTCAT+TGG - chr3_3:84111971-84111990 None:intergenic 30.0%
! GCACATCAATTTTGTAGTTT+TGG + chr3_3:84112049-84112068 Msa0479230:intron 30.0%
ACGAATAGAAAATTCTTTGC+TGG - chr3_3:84112094-84112113 None:intergenic 30.0%
! GAACTTACCATATTGATTGA+AGG + chr3_3:84112126-84112145 Msa0479230:CDS 30.0%
! TTTCTTTTACTAACATGAGC+AGG - chr3_3:84112501-84112520 None:intergenic 30.0%
!! TTGAGAGTATTATAAAGGGA+GGG + chr3_3:84112770-84112789 Msa0479230:intron 30.0%
AATGCATTTGGAAAAGACTT+CGG - chr3_3:84112824-84112843 None:intergenic 30.0%
! ACCTAGCATATTTTATCTCT+AGG + chr3_3:84112968-84112987 Msa0479230:intron 30.0%
ACCTAGAGATAAAATATGCT+AGG - chr3_3:84112972-84112991 None:intergenic 30.0%
! TTTAGGGTACAATAACTAAC+AGG - chr3_3:84113264-84113283 None:intergenic 30.0%
! CAGAATGCTTTTGGATTTTA+GGG - chr3_3:84113280-84113299 None:intergenic 30.0%
! ACAGAATGCTTTTGGATTTT+AGG - chr3_3:84113281-84113300 None:intergenic 30.0%
CCTTCAAGATCTAAATCTAT+GGG - chr3_3:84113474-84113493 None:intergenic 30.0%
TGTACAAACTTGATCACTTA+AGG + chr3_3:84113524-84113543 Msa0479230:three_prime_UTR 30.0%
! ATGGGTTGTTAAATCCAAAA+AGG + chr3_3:84113574-84113593 Msa0479230:three_prime_UTR 30.0%
!! TATTTCTGAGATAAGAGTCA+AGG - chr3_3:84113717-84113736 None:intergenic 30.0%
! TTTTCACCTGTCTTTTGCAT+TGG - chr3_3:84109452-84109471 None:intergenic 35.0%
TGCAAAAGACAGGTGAAAAT+AGG + chr3_3:84109453-84109472 Msa0479230:five_prime_UTR 35.0%
GCAAAAGACAGGTGAAAATA+GGG + chr3_3:84109454-84109473 Msa0479230:five_prime_UTR 35.0%
CAAAAGACAGGTGAAAATAG+GGG + chr3_3:84109455-84109474 Msa0479230:five_prime_UTR 35.0%
! AAAGAGGGAAAATGTTGCTT+CGG + chr3_3:84109578-84109597 Msa0479230:exon 35.0%
GAAAAGGAAGAAGAATACAG+TGG - chr3_3:84109643-84109662 None:intergenic 35.0%
!! AAGTTGCTTTGGAATGGAAA+AGG - chr3_3:84109659-84109678 None:intergenic 35.0%
!! AAAGGTAAGTTGCTTTGGAA+TGG - chr3_3:84109665-84109684 None:intergenic 35.0%
CAAAAACTGAGTGAATGTTG+AGG - chr3_3:84109782-84109801 None:intergenic 35.0%
ATGTCTTCAAGATTTCCGAT+GGG - chr3_3:84109888-84109907 None:intergenic 35.0%
TTCCGATAGTATAACATCAG+CGG - chr3_3:84110102-84110121 None:intergenic 35.0%
TGAAATGAAATTTCCCGAAG+TGG - chr3_3:84110200-84110219 None:intergenic 35.0%
TGATAAGAGTAAACAAGCAC+AGG - chr3_3:84110400-84110419 None:intergenic 35.0%
! CATTGATGGGCAATTACTTT+AGG - chr3_3:84110638-84110657 None:intergenic 35.0%
ATCAAGAAGAAAAAGGCTCA+TGG + chr3_3:84110695-84110714 Msa0479230:CDS 35.0%
CTTTCTCAGTTTCTTGAAGA+GGG + chr3_3:84110768-84110787 Msa0479230:CDS 35.0%
AGTGATACCTATGTTCGTTA+GGG + chr3_3:84111079-84111098 Msa0479230:intron 35.0%
AATGAAGAGTCAACCAATCT+AGG - chr3_3:84111119-84111138 None:intergenic 35.0%
AATGACAAAGTTTCACGAAG+AGG + chr3_3:84111175-84111194 Msa0479230:CDS 35.0%
ATCCTTCTGACGTCAATATT+TGG + chr3_3:84111212-84111231 Msa0479230:intron 35.0%
TACCAAATATTGACGTCAGA+AGG - chr3_3:84111217-84111236 None:intergenic 35.0%
AACTCATATGCCAACACTAA+TGG + chr3_3:84111344-84111363 Msa0479230:intron 35.0%
TTTCAACGATTCCTTAACTC+TGG + chr3_3:84111478-84111497 Msa0479230:intron 35.0%
ATTCCTTAACTCTGGTTGAA+GGG + chr3_3:84111486-84111505 Msa0479230:intron 35.0%
!! ATTTGTTTTCCATGATTGGG+AGG + chr3_3:84111530-84111549 Msa0479230:intron 35.0%
ATAGTTCTCTTGCTCTTTCT+TGG + chr3_3:84111623-84111642 Msa0479230:intron 35.0%
TAGTTCTCTTGCTCTTTCTT+GGG + chr3_3:84111624-84111643 Msa0479230:intron 35.0%
!!! TCAATTTTGTAGTTTTGGCG+CGG + chr3_3:84112054-84112073 Msa0479230:intron 35.0%
! ATTTTCTATTCGTCAGCCAA+AGG + chr3_3:84112101-84112120 Msa0479230:CDS 35.0%
! TTTTCTATTCGTCAGCCAAA+GGG + chr3_3:84112102-84112121 Msa0479230:CDS 35.0%
AATATGGTAAGTTCTCCCTT+TGG - chr3_3:84112120-84112139 None:intergenic 35.0%
!! TTCTAAAGTTGAACCTCCAT+CGG + chr3_3:84112158-84112177 Msa0479230:CDS 35.0%
!! AGCTTATCTTAGGCTTTGTT+TGG + chr3_3:84112646-84112665 Msa0479230:intron 35.0%
!! GCTTATCTTAGGCTTTGTTT+GGG + chr3_3:84112647-84112666 Msa0479230:intron 35.0%
AGGTGGAGGAGAATATATAT+GGG + chr3_3:84112734-84112753 Msa0479230:intron 35.0%
!! GTTGAGAGTATTATAAAGGG+AGG + chr3_3:84112769-84112788 Msa0479230:intron 35.0%
GAGTAATAAATCCTCATGCA+AGG + chr3_3:84112881-84112900 Msa0479230:intron 35.0%
TAATAAATCCTCATGCAAGG+TGG + chr3_3:84112884-84112903 Msa0479230:intron 35.0%
AATAAATCCTCATGCAAGGT+GGG + chr3_3:84112885-84112904 Msa0479230:intron 35.0%
! ATTGGTAGCTGAAAGAACAT+CGG + chr3_3:84113095-84113114 Msa0479230:CDS 35.0%
CTATATATTCACTTGCGTTG+CGG + chr3_3:84113130-84113149 Msa0479230:CDS 35.0%
GAGAAAATGAAACACCAACA+CGG - chr3_3:84113231-84113250 None:intergenic 35.0%
GTACAATAACTAACAGGAGT+TGG - chr3_3:84113258-84113277 None:intergenic 35.0%
TGTTGTTCAATCCTTCAACT+AGG + chr3_3:84113342-84113361 Msa0479230:three_prime_UTR 35.0%
CCCATAGATTTAGATCTTGA+AGG + chr3_3:84113471-84113490 Msa0479230:three_prime_UTR 35.0%
GCCTTCAAGATCTAAATCTA+TGG - chr3_3:84113475-84113494 None:intergenic 35.0%
! CAACTTAGGCTTTTCCTTTT+TGG - chr3_3:84113591-84113610 None:intergenic 35.0%
AAAAGGAAAAGCCTAAGTTG+AGG + chr3_3:84113591-84113610 Msa0479230:three_prime_UTR 35.0%
AGATGGAATTTCCTCAACTT+AGG - chr3_3:84113605-84113624 None:intergenic 35.0%
TACATGCCAATGCAAAAGAC+AGG + chr3_3:84109443-84109462 Msa0479230:five_prime_UTR 40.0%
ATAAGAAGAACGCCTCAACT+CGG - chr3_3:84109485-84109504 None:intergenic 40.0%
! GTTTTTGACGGTATTCGCTT+CGG - chr3_3:84109521-84109540 None:intergenic 40.0%
TTGAAATTGGAACGCAAACG+CGG - chr3_3:84109554-84109573 None:intergenic 40.0%
GAAGAAGAATACAGTGGAAG+AGG - chr3_3:84109637-84109656 None:intergenic 40.0%
ATGTTGAGTGAGATGGAGTT+CGG - chr3_3:84109701-84109720 None:intergenic 40.0%
TATCTGGATGTTGAGTGAGA+TGG - chr3_3:84109708-84109727 None:intergenic 40.0%
TTCATGTTCCTGCAAGTGAA+GGG - chr3_3:84109811-84109830 None:intergenic 40.0%
TTTCATGTTCCTGCAAGTGA+AGG - chr3_3:84109812-84109831 None:intergenic 40.0%
TGTTCCAACGAGATAAAGAC+CGG - chr3_3:84109865-84109884 None:intergenic 40.0%
GATGTCTTCAAGATTTCCGA+TGG - chr3_3:84109889-84109908 None:intergenic 40.0%
ATCTTGAAGACATCACCTTC+AGG + chr3_3:84109895-84109914 Msa0479230:intron 40.0%
! TTTGGTTCACACCATTGTTC+AGG + chr3_3:84110057-84110076 Msa0479230:intron 40.0%
TTGGTTCACACCATTGTTCA+GGG + chr3_3:84110058-84110077 Msa0479230:intron 40.0%
CTCCGCTGATGTTATACTAT+CGG + chr3_3:84110097-84110116 Msa0479230:intron 40.0%
TTATACTATCGGAAGACACG+AGG + chr3_3:84110108-84110127 Msa0479230:intron 40.0%
AAAAGGAAGAGGCTTACAAG+GGG - chr3_3:84110173-84110192 None:intergenic 40.0%
GAAAAGGAAGAGGCTTACAA+GGG - chr3_3:84110174-84110193 None:intergenic 40.0%
! TCTTCCTTTTCCTTCCACTT+CGG + chr3_3:84110183-84110202 Msa0479230:intron 40.0%
ATGAAATTTCCCGAAGTGGA+AGG - chr3_3:84110196-84110215 None:intergenic 40.0%
GTTGAAACAAGGTGAGATTG+TGG + chr3_3:84110304-84110323 Msa0479230:CDS 40.0%
ATACTTACCAACTCCATACC+AGG - chr3_3:84110368-84110387 None:intergenic 40.0%
CATGAATATCATCACGCACA+AGG - chr3_3:84110444-84110463 None:intergenic 40.0%
ATGCAGGCCAAATTATGTGT+TGG + chr3_3:84110461-84110480 Msa0479230:intron 40.0%
ACTCGGGATCAAGAAGAAAA+AGG + chr3_3:84110688-84110707 Msa0479230:CDS 40.0%
AGAAACTGAGAAAGCTTGTG+AGG - chr3_3:84110762-84110781 None:intergenic 40.0%
GCTTTCTCAGTTTCTTGAAG+AGG + chr3_3:84110767-84110786 Msa0479230:CDS 40.0%
! GAAGAGGGTTCGTCAATTTT+CGG + chr3_3:84110783-84110802 Msa0479230:CDS 40.0%
! CGTCAATTTTCGGAGATACA+AGG + chr3_3:84110793-84110812 Msa0479230:CDS 40.0%
TATAAAAGTGGGAGACGAGA+AGG - chr3_3:84110906-84110925 None:intergenic 40.0%
CAGTGATACCTATGTTCGTT+AGG + chr3_3:84111078-84111097 Msa0479230:intron 40.0%
ACTACTTCCCTAACGAACAT+AGG - chr3_3:84111089-84111108 None:intergenic 40.0%
AGTAGTAGCAAGTCCTAGAT+TGG + chr3_3:84111103-84111122 Msa0479230:intron 40.0%
GATTCCTTAACTCTGGTTGA+AGG + chr3_3:84111485-84111504 Msa0479230:intron 40.0%
GTGCTATAAAGCTCCAATCA+TGG - chr3_3:84111655-84111674 None:intergenic 40.0%
TGCATGCCCTTCAATCAATA+TGG - chr3_3:84112136-84112155 None:intergenic 40.0%
! TTCTCGTCTTTTCTCCCATT+TGG + chr3_3:84112466-84112485 Msa0479230:intron 40.0%
GCAGGCAAAATCAACCAAAT+GGG - chr3_3:84112483-84112502 None:intergenic 40.0%
AGCAGGCAAAATCAACCAAA+TGG - chr3_3:84112484-84112503 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTAAGA+GGG + chr3_3:84112658-84112677 Msa0479230:intron 40.0%
GAGTTAAGAGGGTAAGGAAT+GGG + chr3_3:84112669-84112688 Msa0479230:intron 40.0%
! GAGAATCCCTCATCTTGTTT+GGG + chr3_3:84112694-84112713 Msa0479230:intron 40.0%
!! CTTGTTTGGGAGGTTGTTTT+TGG + chr3_3:84112707-84112726 Msa0479230:intron 40.0%
GAGGTGGAGGAGAATATATA+TGG + chr3_3:84112733-84112752 Msa0479230:intron 40.0%
TGGGAACTCACAAATGCATT+TGG - chr3_3:84112836-84112855 None:intergenic 40.0%
ATATGCTAGGTTTGCGTGTT+TGG - chr3_3:84112959-84112978 None:intergenic 40.0%
! TCGACCACTGACATGTTTTT+AGG + chr3_3:84113065-84113084 Msa0479230:intron 40.0%
ACAGCCTAAAAACATGTCAG+TGG - chr3_3:84113072-84113091 None:intergenic 40.0%
ATTTGGGAAGCAACTTGAAG+TGG + chr3_3:84113155-84113174 Msa0479230:CDS 40.0%
TTAGAGTGGCAGATTATTCC+TGG + chr3_3:84113188-84113207 Msa0479230:exon 40.0%
TAAGCTTGATATCACCGTGT+TGG + chr3_3:84113214-84113233 Msa0479230:intron 40.0%
ATAACTAACAGGAGTTGGCA+TGG - chr3_3:84113253-84113272 None:intergenic 40.0%
CCTATTGTCATCCTAGTTGA+AGG - chr3_3:84113356-84113375 None:intergenic 40.0%
CCTTCAACTAGGATGACAAT+AGG + chr3_3:84113353-84113372 Msa0479230:three_prime_UTR 40.0%
TGGTAAACCATTCCTCTTGA+TGG - chr3_3:84113382-84113401 None:intergenic 40.0%
ATCAGCAGTTGTTCAACAAG+TGG - chr3_3:84113402-84113421 None:intergenic 40.0%
GAACAACTGCTGATCATGTA+TGG + chr3_3:84113408-84113427 Msa0479230:three_prime_UTR 40.0%
ACTGCTGATCATGTATGGTT+CGG + chr3_3:84113413-84113432 Msa0479230:three_prime_UTR 40.0%
CAAGGAAACAATGTGAATGC+TGG - chr3_3:84113447-84113466 None:intergenic 40.0%
CAGCATTCACATTGTTTCCT+TGG + chr3_3:84113445-84113464 Msa0479230:three_prime_UTR 40.0%
TCTAAATCTATGGGAAGCCA+AGG - chr3_3:84113465-84113484 None:intergenic 40.0%
! TTGAAGGCATACTCAGCAAT+AGG + chr3_3:84113487-84113506 Msa0479230:three_prime_UTR 40.0%
AGTCAAGGAACTACTACTCA+TGG - chr3_3:84113702-84113721 None:intergenic 40.0%
ACGGTATTCGCTTCGGATTA+TGG - chr3_3:84109514-84109533 None:intergenic 45.0%
AGAATACAGTGGAAGAGGTG+CGG - chr3_3:84109632-84109651 None:intergenic 45.0%
GGGGAAAAGGTAAGTTGCTT+TGG - chr3_3:84109670-84109689 None:intergenic 45.0%
TTCGGAGGATAAAGGGGAAA+AGG - chr3_3:84109683-84109702 None:intergenic 45.0%
ATGGAGTTCGGAGGATAAAG+GGG - chr3_3:84109689-84109708 None:intergenic 45.0%
GATGGAGTTCGGAGGATAAA+GGG - chr3_3:84109690-84109709 None:intergenic 45.0%
AGATGGAGTTCGGAGGATAA+AGG - chr3_3:84109691-84109710 None:intergenic 45.0%
AAACCCGGTCTTTATCTCGT+TGG + chr3_3:84109858-84109877 Msa0479230:intron 45.0%
GTTCCAACGAGATAAAGACC+GGG - chr3_3:84109864-84109883 None:intergenic 45.0%
TATCTCGTTGGAACACCCAT+CGG + chr3_3:84109870-84109889 Msa0479230:intron 45.0%
GGAAAAGGAAGAGGCTTACA+AGG - chr3_3:84110175-84110194 None:intergenic 45.0%
GAAGTGGAAGGAAAAGGAAG+AGG - chr3_3:84110184-84110203 None:intergenic 45.0%
! CTTCCTTTTCCTTCCACTTC+GGG + chr3_3:84110184-84110203 Msa0479230:intron 45.0%
TTTCCCGAAGTGGAAGGAAA+AGG - chr3_3:84110190-84110209 None:intergenic 45.0%
AAAGGGAACAACTTGTGCTC+AGG + chr3_3:84110279-84110298 Msa0479230:CDS 45.0%
ATACCAGGATCACTGATACC+AGG - chr3_3:84110353-84110372 None:intergenic 45.0%
TGGTATCAGTGATCCTGGTA+TGG + chr3_3:84110352-84110371 Msa0479230:CDS 45.0%
GTGCGTGATGATATTCATGC+AGG + chr3_3:84110445-84110464 Msa0479230:intron 45.0%
ATACCAAAGCACATGGACCT+GGG - chr3_3:84110511-84110530 None:intergenic 45.0%
AGGTCCATGTGCTTTGGTAT+CGG + chr3_3:84110511-84110530 Msa0479230:CDS 45.0%
TTCATCAGTGGATAAACCCG+AGG - chr3_3:84110546-84110565 None:intergenic 45.0%
AACTGACTGAACGATATGGG+CGG + chr3_3:84110582-84110601 Msa0479230:intron 45.0%
!! CGGTTTTCTTCCAAAGCACT+CGG + chr3_3:84110671-84110690 Msa0479230:CDS 45.0%
!! GGTTTTCTTCCAAAGCACTC+GGG + chr3_3:84110672-84110691 Msa0479230:CDS 45.0%
AACTGAGAAAGCTTGTGAGG+AGG - chr3_3:84110759-84110778 None:intergenic 45.0%
GGTATCACTGATGCAACTTG+TGG - chr3_3:84111068-84111087 None:intergenic 45.0%
CTAAGGACCTTTATTCCCAC+TGG - chr3_3:84111318-84111337 None:intergenic 45.0%
CATCCCTTCAACCAGAGTTA+AGG - chr3_3:84111492-84111511 None:intergenic 45.0%
! TCTGGTTGAAGGGATGCTTT+TGG + chr3_3:84111496-84111515 Msa0479230:intron 45.0%
! CTGGTTGAAGGGATGCTTTT+GGG + chr3_3:84111497-84111516 Msa0479230:intron 45.0%
TCCATGATTGGGAGGTTATG+CGG + chr3_3:84111538-84111557 Msa0479230:intron 45.0%
TTCTTGGGTCATGCCATGAT+TGG + chr3_3:84111639-84111658 Msa0479230:intron 45.0%
TGGTGCAGTAACCGTAGTTA+AGG - chr3_3:84111695-84111714 None:intergenic 45.0%
TCCTCAAGATTGGTGAAGCT+GGG + chr3_3:84111721-84111740 Msa0479230:intron 45.0%
TATGTGCCCACACTTATGAC+AGG - chr3_3:84111935-84111954 None:intergenic 45.0%
!!! TAGTTTTGGCGCGGTACTTT+TGG + chr3_3:84112063-84112082 Msa0479230:intron 45.0%
TTCTCAAGCTCAATGTCCGA+TGG - chr3_3:84112177-84112196 None:intergenic 45.0%
AAATGGCGAGAGTCTTTCCA+CGG + chr3_3:84112218-84112237 Msa0479230:CDS 45.0%
CTATTGGGAAGCTATTACCG+TGG - chr3_3:84112238-84112257 None:intergenic 45.0%
!! GGCTTTGTTTGGGAGTTAAG+AGG + chr3_3:84112657-84112676 Msa0479230:intron 45.0%
GTTTGGGAGTTAAGAGGGTA+AGG + chr3_3:84112663-84112682 Msa0479230:intron 45.0%
GGAGTTAAGAGGGTAAGGAA+TGG + chr3_3:84112668-84112687 Msa0479230:intron 45.0%
TTAAGAGGGTAAGGAATGGG+AGG + chr3_3:84112672-84112691 Msa0479230:intron 45.0%
GGAGAATCCCTCATCTTGTT+TGG + chr3_3:84112693-84112712 Msa0479230:intron 45.0%
! AATCCCTCATCTTGTTTGGG+AGG + chr3_3:84112697-84112716 Msa0479230:intron 45.0%
CAACCTCCCAAACAAGATGA+GGG - chr3_3:84112703-84112722 None:intergenic 45.0%
ACAACCTCCCAAACAAGATG+AGG - chr3_3:84112704-84112723 None:intergenic 45.0%
ATAAAGGGAGGGAGACAAGA+TGG + chr3_3:84112781-84112800 Msa0479230:intron 45.0%
AGGAGAAAGAGAGGAGGAAA+GGG - chr3_3:84112927-84112946 None:intergenic 45.0%
!! AGAGCTTTGAGGAGAAAGAG+AGG - chr3_3:84112936-84112955 None:intergenic 45.0%
TCACTTGCGTTGCGGAAATT+TGG + chr3_3:84113138-84113157 Msa0479230:CDS 45.0%
CACTTGCGTTGCGGAAATTT+GGG + chr3_3:84113139-84113158 Msa0479230:CDS 45.0%
! GTGGAGGATTCAAGTTAGAG+TGG + chr3_3:84113174-84113193 Msa0479230:exon 45.0%
GTGATATCAAGCTTACCTCC+AGG - chr3_3:84113209-84113228 None:intergenic 45.0%
GACAATAGGCTTCCATCAAG+AGG + chr3_3:84113367-84113386 Msa0479230:three_prime_UTR 45.0%
TAGGCTTCCATCAAGAGGAA+TGG + chr3_3:84113372-84113391 Msa0479230:three_prime_UTR 45.0%
!! CTGATCATGTATGGTTCGGT+TGG + chr3_3:84113417-84113436 Msa0479230:three_prime_UTR 45.0%
TGAATACAAGACGAGGGAGA+TGG - chr3_3:84113622-84113641 None:intergenic 45.0%
CTGGGATGAATACAAGACGA+GGG - chr3_3:84113628-84113647 None:intergenic 45.0%
! TCTGGGATGAATACAAGACG+AGG - chr3_3:84113629-84113648 None:intergenic 45.0%
AACTCTCTTGGTCAAGTGCT+GGG - chr3_3:84113661-84113680 None:intergenic 45.0%
GACCAAGAGAGTTCGTCATT+AGG + chr3_3:84113668-84113687 Msa0479230:three_prime_UTR 45.0%
CACCTAATGACGAACTCTCT+TGG - chr3_3:84113673-84113692 None:intergenic 45.0%
! AATAGGGGTACACCGAGTTG+AGG + chr3_3:84109470-84109489 Msa0479230:five_prime_UTR 50.0%
TTGAGTGAGATGGAGTTCGG+AGG - chr3_3:84109698-84109717 None:intergenic 50.0%
TGAGTCTTCCCTTCACTTGC+AGG + chr3_3:84109800-84109819 Msa0479230:intron 50.0%
GTGCTCAGGAGGTTGAAACA+AGG + chr3_3:84110293-84110312 Msa0479230:CDS 50.0%
GTGGCACTTATAAGTGACGC+TGG + chr3_3:84110323-84110342 Msa0479230:CDS 50.0%
CAGTGATCCTGGTATGGAGT+TGG + chr3_3:84110358-84110377 Msa0479230:CDS 50.0%
GTTCCTGTTGTTCCAATCCC+AGG + chr3_3:84110491-84110510 Msa0479230:CDS 50.0%
AAAGCACATGGACCTGGGAT+TGG - chr3_3:84110506-84110525 None:intergenic 50.0%
AATCCCAGGTCCATGTGCTT+TGG + chr3_3:84110505-84110524 Msa0479230:CDS 50.0%
GATACCAAAGCACATGGACC+TGG - chr3_3:84110512-84110531 None:intergenic 50.0%
AGAGCCGATACCAAAGCACA+TGG - chr3_3:84110518-84110537 None:intergenic 50.0%
CTTCTTGATCCCGAGTGCTT+TGG - chr3_3:84110684-84110703 None:intergenic 50.0%
CATGGCTTCAGCAGAGCAAA+CGG + chr3_3:84110713-84110732 Msa0479230:CDS 50.0%
ACCATGCCTCTCCTCAAGAT+TGG + chr3_3:84111711-84111730 Msa0479230:intron 50.0%
ACCAATCTTGAGGAGAGGCA+TGG - chr3_3:84111715-84111734 None:intergenic 50.0%
GCTTCACCAATCTTGAGGAG+AGG - chr3_3:84111720-84111739 None:intergenic 50.0%
CTCCTCAAGATTGGTGAAGC+TGG + chr3_3:84111720-84111739 Msa0479230:intron 50.0%
CCTCAAGATTGGTGAAGCTG+GGG + chr3_3:84111722-84111741 Msa0479230:intron 50.0%
TCAAGCTCAATGTCCGATGG+AGG - chr3_3:84112174-84112193 None:intergenic 50.0%
!!! AGGTTGTTTTTGGAGCGAGG+TGG + chr3_3:84112717-84112736 Msa0479230:intron 50.0%
!!! TTGTTTTTGGAGCGAGGTGG+AGG + chr3_3:84112720-84112739 Msa0479230:intron 50.0%
AAAGAGAGGAGGAAAGGGGA+AGG - chr3_3:84112922-84112941 None:intergenic 50.0%
GGAGAAAGAGAGGAGGAAAG+GGG - chr3_3:84112926-84112945 None:intergenic 50.0%
GAGGAGAAAGAGAGGAGGAA+AGG - chr3_3:84112928-84112947 None:intergenic 50.0%
!! GCTTTGAGGAGAAAGAGAGG+AGG - chr3_3:84112933-84112952 None:intergenic 50.0%
TGCGTGTTTGGAGAGCTTTG+AGG - chr3_3:84112947-84112966 None:intergenic 50.0%
TGGGAAGCAACTTGAAGTGG+AGG + chr3_3:84113158-84113177 Msa0479230:CDS 50.0%
GAGTGGCAGATTATTCCTGG+AGG + chr3_3:84113191-84113210 Msa0479230:exon 50.0%
GTGCTGGGGAAAGAACATCT+GGG - chr3_3:84113646-84113665 None:intergenic 50.0%
! AGTGCTGGGGAAAGAACATC+TGG - chr3_3:84113647-84113666 None:intergenic 50.0%
! ACTCTCTTGGTCAAGTGCTG+GGG - chr3_3:84113660-84113679 None:intergenic 50.0%
GAACTCTCTTGGTCAAGTGC+TGG - chr3_3:84113662-84113681 None:intergenic 50.0%
! TGTTGCTTCGGCGATTACCC+TGG + chr3_3:84109590-84109609 Msa0479230:CDS 55.0%
GCAGTGGAAAACGCCATCCA+GGG - chr3_3:84109610-84109629 None:intergenic 55.0%
CACCATTGTTCAGGGCTCTC+CGG + chr3_3:84110066-84110085 Msa0479230:intron 55.0%
ACCATTGTTCAGGGCTCTCC+GGG + chr3_3:84110067-84110086 Msa0479230:intron 55.0%
CATCAGCGGAGTTCAACACC+CGG - chr3_3:84110088-84110107 None:intergenic 55.0%
GGGAACAACTTGTGCTCAGG+AGG + chr3_3:84110282-84110301 Msa0479230:CDS 55.0%
ATAAGTGACGCTGGAACGCC+TGG + chr3_3:84110332-84110351 Msa0479230:CDS 55.0%
ACGCCTGGTATCAGTGATCC+TGG + chr3_3:84110347-84110366 Msa0479230:CDS 55.0%
GGACCTGGGATTGGAACAAC+AGG - chr3_3:84110497-84110516 None:intergenic 55.0%
!! GGTATCGGCTCTTTCTGCCT+CGG + chr3_3:84110526-84110545 Msa0479230:CDS 55.0%
!! GTATCGGCTCTTTCTGCCTC+GGG + chr3_3:84110527-84110546 Msa0479230:CDS 55.0%
GCCGCATAACCTCCCAATCA+TGG - chr3_3:84111542-84111561 None:intergenic 55.0%
CCCCAGCTTCACCAATCTTG+AGG - chr3_3:84111725-84111744 None:intergenic 55.0%
!!! GGGAGGTTGTTTTTGGAGCG+AGG + chr3_3:84112714-84112733 Msa0479230:intron 55.0%
GTAGTCTCCCACCTTGCATG+AGG - chr3_3:84112895-84112914 None:intergenic 55.0%
GCTTCGGCGATTACCCTGGA+TGG + chr3_3:84109594-84109613 Msa0479230:CDS 60.0%
GGCAGTGGAAAACGCCATCC+AGG - chr3_3:84109611-84109630 None:intergenic 60.0%
CGCACGCAGCATCTCAAACC+CGG + chr3_3:84109843-84109862 Msa0479230:CDS 60.0%
ACCCGGAGAGCCCTGAACAA+TGG - chr3_3:84110071-84110090 None:intergenic 60.0%
! TCGGAAGACACGAGGCACTC+TGG + chr3_3:84110116-84110135 Msa0479230:intron 60.0%
! CGGAAGACACGAGGCACTCT+GGG + chr3_3:84110117-84110136 Msa0479230:intron 60.0%
! CAGTGGAAGAGGTGCGGCAG+TGG - chr3_3:84109626-84109645 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84109435 84113808 84109435 ID=Msa0479230;Name=Msa0479230
chr3_3 mRNA 84109435 84113808 84109435 ID=Msa0479230-mRNA-1;Parent=Msa0479230;Name=Msa0479230-mRNA-1;_AED=0.13;_eAED=0.13;_QI=154|0.87|0.88|1|0.87|0.77|9|520|302
chr3_3 exon 84109435 84109738 84109435 ID=Msa0479230-mRNA-1:exon:23844;Parent=Msa0479230-mRNA-1
chr3_3 exon 84109822 84109875 84109822 ID=Msa0479230-mRNA-1:exon:23845;Parent=Msa0479230-mRNA-1
chr3_3 exon 84110251 84110379 84110251 ID=Msa0479230-mRNA-1:exon:23846;Parent=Msa0479230-mRNA-1
chr3_3 exon 84110467 84110575 84110467 ID=Msa0479230-mRNA-1:exon:23847;Parent=Msa0479230-mRNA-1
chr3_3 exon 84110670 84110814 84110670 ID=Msa0479230-mRNA-1:exon:23848;Parent=Msa0479230-mRNA-1
chr3_3 exon 84111154 84111196 84111154 ID=Msa0479230-mRNA-1:exon:23849;Parent=Msa0479230-mRNA-1
chr3_3 exon 84112066 84112239 84112066 ID=Msa0479230-mRNA-1:exon:23850;Parent=Msa0479230-mRNA-1
chr3_3 exon 84113087 84113212 84113087 ID=Msa0479230-mRNA-1:exon:23851;Parent=Msa0479230-mRNA-1
chr3_3 exon 84113310 84113808 84113310 ID=Msa0479230-mRNA-1:exon:23852;Parent=Msa0479230-mRNA-1
chr3_3 five_prime_UTR 84109435 84109588 84109435 ID=Msa0479230-mRNA-1:five_prime_utr;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84109589 84109738 84109589 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84109822 84109875 84109822 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84110251 84110379 84110251 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84110467 84110575 84110467 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84110670 84110814 84110670 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84111154 84111196 84111154 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84112066 84112239 84112066 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 CDS 84113087 84113191 84113087 ID=Msa0479230-mRNA-1:cds;Parent=Msa0479230-mRNA-1
chr3_3 three_prime_UTR 84113192 84113212 84113192 ID=Msa0479230-mRNA-1:three_prime_utr;Parent=Msa0479230-mRNA-1
chr3_3 three_prime_UTR 84113310 84113808 84113310 ID=Msa0479230-mRNA-1:three_prime_utr;Parent=Msa0479230-mRNA-1
Gene Sequence

>Msa0479230

ATGTTGCTTCGGCGATTACCCTGGATGGCGTTTTCCACTGCCGCACCTCTTCCACTGTATTCTTCTTCCTTTTCCATTCCAAAGCAACTTACCTTTTCCCCTTTATCCTCCGAACTCCATCTCACTCAACATCCAGATAATAATAAACTTGAACATGAAACTGATAATCGTCGCACGCAGCATCTCAAACCCGGTCTTTATCTCATGAGTTATCACAAATTCAATGAATCACAAAGGGAACAACTTGTGCTCAGGAGGTTGAAACAAGGTGAGATTGTGGCACTTATAAGTGACGCTGGAACGCCTGGTATCAGTGATCCTGGTATGGAGTTGGCCAAATTATGTGTTGGTGAAAATGTTCCTGTTGTTCCAATCCCAGGTCCATGTGCTTTGGTATCGGCTCTTTCTGCCTCGGGTTTATCCACTGATGAATTTACATTTGTCGGTTTTCTTCCAAAGCACTCGGGATCAAGAAGAAAAAGGCTCATGGCTTCAGCAGAGCAAACGGCAACACAAATATTTTACGTTCCTCCTCACAAGCTTTCTCAGTTTCTTGAAGAGGGTTCGTCAATTTTCGGAGATACAAGGAGATGTGTTATTGCTCGAGAAATGACAAAGTTTCACGAAGAGTTTTGGCGCGGTACTTTTGGCGAAGCCAGCAAAGAATTTTCTATTCGTCAGCCAAAGGGAGAACTTACCATATTGATTGAAGGGCATGCAAATTCTAAAGTTGAACCTCCATCGGACATTGAGCTTGAGAACAAACTAAGAGAATTAATTGAAAATGGCGAGAGTCTTTCCACGGCTGTTAAATTGGTAGCTGAAAGAACATCGGTGAGTAGAAAAACTATATATTCACTTGCGTTGCGGAAATTTGGGAAGCAACTTGAAGTGGAGGATTCAAGTTAG

Protein sequence

>Msa0479230

MLLRRLPWMAFSTAAPLPLYSSSFSIPKQLTFSPLSSELHLTQHPDNNKLEHETDNRRTQHLKPGLYLMSYHKFNESQREQLVLRRLKQGEIVALISDAGTPGISDPGMELAKLCVGENVPVVPIPGPCALVSALSASGLSTDEFTFVGFLPKHSGSRRKRLMASAEQTATQIFYVPPHKLSQFLEEGSSIFGDTRRCVIAREMTKFHEEFWRGTFGEASKEFSIRQPKGELTILIEGHANSKVEPPSDIELENKLRELIENGESLSTAVKLVAERTSVSRKTIYSLALRKFGKQLEVEDSS*