AlfalfaGEDB | Msa1418210

M. sativa cultivar zhongmu-4 / Msa1418210

KEGG: -
GO: -
PFAM: PF11317.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1418210	A0A396IHZ0	94.860	214	11	0	1	214	27	240	3.31e-139	398

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1418210	0.858764	6.583254e-63	-8.615850e-47
Msa0001040	Msa1418210	0.835856	1.314994e-56	-8.615850e-47
Msa0001510	Msa1418210	0.907799	3.428342e-81	-8.615850e-47
Msa0001540	Msa1418210	0.819627	1.051697e-52	-8.615850e-47
Msa0002060	Msa1418210	0.833149	6.296224e-56	-8.615850e-47
Msa0002110	Msa1418210	0.833660	4.694860e-56	-8.615850e-47
Msa0002690	Msa1418210	0.894107	3.363506e-75	-8.615850e-47
Msa0002700	Msa1418210	0.883693	3.615287e-71	-8.615850e-47
Msa0003340	Msa1418210	0.852824	3.583145e-61	-8.615850e-47
Msa0004180	Msa1418210	0.913298	7.235848e-84	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1418210	MtrunA17_Chr4g0063641	94.860	214	11	0	1	214	27	240	6.38e-143	398

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 198 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATTGATTGTAATTT+TGG	0.076933	tig0024555:-13855	None:intergenic
AAACACAAACAAAGCCTGAA+GGG	0.561088	tig0024555:+12468	Msa1418210:CDS
AAACATCCGAGAGCACTGCA+TGG	0.641439	tig0024555:-13240	None:intergenic
AAATGCCAACTTTGCTCCAG+TGG	0.542923	tig0024555:+14173	Msa1418210:three_prime_UTR
AAATTAGGGTTAGGGTTTGA+AGG	0.397564	tig0024555:+16698	Msa1418210:three_prime_UTR
AAATTGCTTACAAAGATTAT+AGG	0.254616	tig0024555:-12506	None:intergenic
AACAGTGCGGTTTCTGCCAC+TGG	0.425550	tig0024555:-14189	Msa1418220:CDS
AACTTCAGAAACTTCATTGC+AGG	0.317204	tig0024555:-13162	None:intergenic
AAGAAATCTAACCTTATGAA+CGG	0.619120	tig0024555:+16220	Msa1418210:intron
AAGAAATGAATTTGCCCTTC+AGG	0.307249	tig0024555:-12482	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCAATCCAAATTTCTCT+GGG	+	tig0024555:10839-10858	Msa1418210:CDS	30.0%
GTTAATATTAGTGACGTGAA+CGG	+	tig0024555:11134-11153	Msa1418210:intron	30.0%
GAATTTCTATGTTGACAGTT+TGG	+	tig0024555:11209-11228	Msa1418210:intron	30.0%
CAAAGGATCCAACAAAATTA+AGG	-	tig0024555:11444-11463	None:intergenic	30.0%
CTAGATGAATCAAAATCTTG+AGG	+	tig0024555:11467-11486	Msa1418210:intron	30.0%
GGAAATGCAAAAAAGACTTA+AGG	-	tig0024555:11525-11544	None:intergenic	30.0%
TGTTTCTCAGATATCATGAA+GGG	-	tig0024555:11923-11942	None:intergenic	30.0%
ATATTAGAAGGAGAAAGATG+CGG	-	tig0024555:11983-12002	None:intergenic	30.0%
AGTGCAGAACTATATAACAT+AGG	-	tig0024555:12054-12073	None:intergenic	30.0%
ACTGAAAAGTGGATGATTAT+TGG	-	tig0024555:12112-12131	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0024555	gene	10544	16995	10544	ID=Msa1418210;Name=Msa1418210
tig0024555	mRNA	10544	16995	10544	ID=Msa1418210-mRNA-1;Parent=Msa1418210;Name=Msa1418210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=54\|1\|1\|1\|0.7\|0.63\|11\|1897\|214
tig0024555	exon	10544	10643	10544	ID=Msa1418210-mRNA-1:exon:235;Parent=Msa1418210-mRNA-1
tig0024555	exon	10782	10909	10782	ID=Msa1418210-mRNA-1:exon:236;Parent=Msa1418210-mRNA-1
tig0024555	exon	11227	11314	11227	ID=Msa1418210-mRNA-1:exon:237;Parent=Msa1418210-mRNA-1
tig0024555	exon	11604	11686	11604	ID=Msa1418210-mRNA-1:exon:238;Parent=Msa1418210-mRNA-1
tig0024555	exon	11784	11822	11784	ID=Msa1418210-mRNA-1:exon:239;Parent=Msa1418210-mRNA-1
tig0024555	exon	12257	12327	12257	ID=Msa1418210-mRNA-1:exon:240;Parent=Msa1418210-mRNA-1
tig0024555	exon	12403	12517	12403	ID=Msa1418210-mRNA-1:exon:241;Parent=Msa1418210-mRNA-1
tig0024555	exon	12663	12796	12663	ID=Msa1418210-mRNA-1:exon:242;Parent=Msa1418210-mRNA-1
tig0024555	exon	13136	13562	13136	ID=Msa1418210-mRNA-1:exon:243;Parent=Msa1418210-mRNA-1
tig0024555	exon	13583	14232	13583	ID=Msa1418210-mRNA-1:exon:244;Parent=Msa1418210-mRNA-1
tig0024555	exon	16235	16995	16235	ID=Msa1418210-mRNA-1:exon:245;Parent=Msa1418210-mRNA-1
tig0024555	five_prime_UTR	10544	10597	10544	ID=Msa1418210-mRNA-1:five_prime_utr;Parent=Msa1418210-mRNA-1
tig0024555	CDS	10598	10643	10598	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	10782	10909	10782	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	11227	11314	11227	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	11604	11686	11604	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	11784	11822	11784	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	12257	12327	12257	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	12403	12517	12403	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	CDS	12663	12737	12663	ID=Msa1418210-mRNA-1:cds;Parent=Msa1418210-mRNA-1
tig0024555	three_prime_UTR	12738	12796	12738	ID=Msa1418210-mRNA-1:three_prime_utr;Parent=Msa1418210-mRNA-1
tig0024555	three_prime_UTR	13136	13562	13136	ID=Msa1418210-mRNA-1:three_prime_utr;Parent=Msa1418210-mRNA-1
tig0024555	three_prime_UTR	13583	14232	13583	ID=Msa1418210-mRNA-1:three_prime_utr;Parent=Msa1418210-mRNA-1
tig0024555	three_prime_UTR	16235	16995	16235	ID=Msa1418210-mRNA-1:three_prime_utr;Parent=Msa1418210-mRNA-1

Gene Sequence

>Msa1418210

ATGGCAACCACTTTGTTGTCCGTACACCGTTTTCTTCCCTCCCAAAGGAAAGAAAATGTTGGATACTTGAGTGGTTTCAAGAATTCATTGAGTGAAAGAGTTGTGTTCAATCCAAATTTCTCTGGGAGACAATTTACAGGAAGCCATGGAAACCGTTTTGTTGTTAACTCTCTGTTTGGAATTGGAAGGAAGGCGAAGAAGAGTATTGTCAGAGAGACTGTGATTCCTGAACCAGACTACAGAATTCCAGTTGTACTACTTGGTATAGCTGGTGGGTTAGTTTACACAGATAATCTAGTGCCTGCAGTACCTGTTGGTCTCCTTGGACTGCTTTTGTTGGTCCAGGCAACTAGAGTGAGATTTGTCTTTGATGATGAAGCTCTGGAGGTAAAGATAGGCGATCAGCTCGATGAATCGGGTGAGAATGCTTTTGTCGGTGGAAAAAATCGTTGGAAGTACTCAACCTTTGTTAATTGGGAATTCTGGTGGCCAAACTTCCCTATATTGGTTTACTTCAAGGAAACACAAACAAAGCCTGAAGGGCAAATTCATTTCTTCCCTATAATCTTTAATGGGAAGCAGCTTTATGACATTATGGTGGAAAGAGCTGGCTCTTCAAAAACTAGTGCCCCGAAAGAATCCTAA

Protein sequence

>Msa1418210

MATTLLSVHRFLPSQRKENVGYLSGFKNSLSERVVFNPNFSGRQFTGSHGNRFVVNSLFGIGRKAKKSIVRETVIPEPDYRIPVVLLGIAGGLVYTDNLVPAVPVGLLGLLLLVQATRVRFVFDDEALEVKIGDQLDESGENAFVGGKNRWKYSTFVNWEFWWPNFPILVYFKETQTKPEGQIHFFPIIFNGKQLYDIMVERAGSSKTSAPKES*