Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046060 | XP_003592799.2 | 83.831 | 402 | 15 | 3 | 1 | 352 | 1 | 402 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046060 | sp|Q9MAT6|HMG15_ARATH | 47.185 | 373 | 124 | 13 | 1 | 313 | 1 | 360 | 7.22e-91 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0046060 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0046060 | 0.814535 | 1.466436e-51 | -8.615850e-47 |
| Msa0008850 | Msa0046060 | 0.802782 | 4.763834e-49 | -8.615850e-47 |
| Msa0012460 | Msa0046060 | 0.801006 | 1.103398e-48 | -8.615850e-47 |
| Msa0017120 | Msa0046060 | 0.841159 | 5.626272e-58 | -8.615850e-47 |
| Msa0030730 | Msa0046060 | 0.804745 | 1.863586e-49 | -8.615850e-47 |
| Msa0037820 | Msa0046060 | 0.845456 | 4.016654e-59 | -8.615850e-47 |
| Msa0040410 | Msa0046060 | 0.803045 | 4.203811e-49 | -8.615850e-47 |
| Msa0043940 | Msa0046060 | 0.807364 | 5.241223e-50 | -8.615850e-47 |
| Msa0046060 | Msa0047470 | 0.843446 | 1.394552e-58 | -8.615850e-47 |
| Msa0046060 | Msa0060350 | 0.816590 | 5.112249e-52 | -8.615850e-47 |
| Msa0046060 | Msa0065390 | 0.803533 | 3.331950e-49 | -8.615850e-47 |
| Msa0046060 | Msa0079250 | 0.826294 | 2.935929e-54 | -8.615850e-47 |
| Msa0046060 | Msa0083160 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0046060 | Msa0084630 | 0.825158 | 5.458571e-54 | -8.615850e-47 |
| Msa0046060 | Msa0084680 | 0.823851 | 1.108835e-53 | -8.615850e-47 |
| Msa0046060 | Msa0089210 | 0.803314 | 3.697854e-49 | -8.615850e-47 |
| Msa0046060 | Msa0091480 | 0.806998 | 6.264472e-50 | -8.615850e-47 |
| Msa0046060 | Msa0092660 | 0.828393 | 9.219277e-55 | -8.615850e-47 |
| Msa0046060 | Msa0092680 | 0.807627 | 4.609193e-50 | -8.615850e-47 |
| Msa0046060 | Msa0092710 | 0.801787 | 7.636745e-49 | -8.615850e-47 |
| Msa0046060 | Msa0092730 | 0.824901 | 6.277029e-54 | -8.615850e-47 |
| Msa0046060 | Msa0105210 | 0.818757 | 1.659670e-52 | -8.615850e-47 |
| Msa0046060 | Msa0107460 | 0.806759 | 7.036209e-50 | -8.615850e-47 |
| Msa0046060 | Msa0110710 | 0.808599 | 2.862026e-50 | -8.615850e-47 |
| Msa0046060 | Msa0112290 | 0.800857 | 1.183671e-48 | -8.615850e-47 |
| Msa0046060 | Msa0125230 | 0.806034 | 1.000396e-49 | -8.615850e-47 |
| Msa0046060 | Msa0130800 | 0.842113 | 3.152674e-58 | -8.615850e-47 |
| Msa0046060 | Msa0137600 | 0.821884 | 3.184562e-53 | -8.615850e-47 |
| Msa0046060 | Msa0143080 | 0.816959 | 4.225937e-52 | -8.615850e-47 |
| Msa0046060 | Msa0143970 | 0.827725 | 1.334824e-54 | -8.615850e-47 |
| Msa0046060 | Msa0143980 | 0.823186 | 1.586076e-53 | -8.615850e-47 |
| Msa0046060 | Msa0157020 | 0.816916 | 4.321750e-52 | -8.615850e-47 |
| Msa0046060 | Msa0157350 | 0.809145 | 2.186237e-50 | -8.615850e-47 |
| Msa0046060 | Msa0171920 | 0.800002 | 1.768002e-48 | -8.615850e-47 |
| Msa0046060 | Msa0172370 | 0.802855 | 4.602654e-49 | -8.615850e-47 |
| Msa0046060 | Msa0175280 | 0.813753 | 2.182012e-51 | -8.615850e-47 |
| Msa0046060 | Msa0178940 | 0.809354 | 1.972458e-50 | -8.615850e-47 |
| Msa0046060 | Msa0181010 | 0.803769 | 2.976761e-49 | -8.615850e-47 |
| Msa0046060 | Msa0181020 | 0.829241 | 5.747468e-55 | -8.615850e-47 |
| Msa0046060 | Msa0182640 | 0.805642 | 1.209689e-49 | -8.615850e-47 |
| Msa0046060 | Msa0185390 | 0.823298 | 1.493391e-53 | -8.615850e-47 |
| Msa0046060 | Msa0194970 | 0.802481 | 5.497757e-49 | -8.615850e-47 |
| Msa0046060 | Msa0197940 | -0.804159 | 2.469290e-49 | -8.615850e-47 |
| Msa0046060 | Msa0206940 | 0.827126 | 1.858602e-54 | -8.615850e-47 |
| Msa0046060 | Msa0222070 | 0.800246 | 1.577203e-48 | -8.615850e-47 |
| Msa0046060 | Msa0222120 | 0.804138 | 2.494720e-49 | -8.615850e-47 |
| Msa0046060 | Msa0236980 | 0.801217 | 9.992620e-49 | -8.615850e-47 |
| Msa0046060 | Msa0242290 | 0.802785 | 4.757366e-49 | -8.615850e-47 |
| Msa0046060 | Msa0250520 | 0.828534 | 8.523992e-55 | -8.615850e-47 |
| Msa0046060 | Msa0263620 | 0.803352 | 3.631822e-49 | -8.615850e-47 |
| Msa0046060 | Msa0280140 | 0.828303 | 9.688765e-55 | -8.615850e-47 |
| Msa0046060 | Msa0296000 | 0.830301 | 3.171503e-55 | -8.615850e-47 |
| Msa0046060 | Msa0296610 | 0.805592 | 1.239243e-49 | -8.615850e-47 |
| Msa0046060 | Msa0333900 | 0.850504 | 1.627521e-60 | -8.615850e-47 |
| Msa0046060 | Msa0334020 | 0.853677 | 2.040730e-61 | -8.615850e-47 |
| Msa0046060 | Msa0334980 | 0.821470 | 3.969242e-53 | -8.615850e-47 |
| Msa0046060 | Msa0336270 | 0.802683 | 4.993089e-49 | -8.615850e-47 |
| Msa0046060 | Msa0354390 | 0.811959 | 5.393487e-51 | -8.615850e-47 |
| Msa0046060 | Msa0367370 | 0.803923 | 2.765242e-49 | -8.615850e-47 |
| Msa0046060 | Msa0367490 | 0.814274 | 1.674856e-51 | -8.615850e-47 |
| Msa0046060 | Msa0369780 | 0.843431 | 1.407342e-58 | -8.615850e-47 |
| Msa0046060 | Msa0380420 | 0.803570 | 3.273009e-49 | -8.615850e-47 |
| Msa0046060 | Msa0382500 | 0.859064 | 5.354251e-63 | -8.615850e-47 |
| Msa0046060 | Msa0387790 | 0.822753 | 2.001148e-53 | -8.615850e-47 |
| Msa0046060 | Msa0411560 | 0.809182 | 2.146727e-50 | -8.615850e-47 |
| Msa0046060 | Msa0413740 | 0.804079 | 2.566229e-49 | -8.615850e-47 |
| Msa0046060 | Msa0415930 | 0.802588 | 5.225478e-49 | -8.615850e-47 |
| Msa0046060 | Msa0417150 | 0.862198 | 6.006409e-64 | -8.615850e-47 |
| Msa0046060 | Msa0421800 | 0.815286 | 9.995236e-52 | -8.615850e-47 |
| Msa0046060 | Msa0432680 | 0.863629 | 2.172679e-64 | -8.615850e-47 |
| Msa0046060 | Msa0437780 | 0.898576 | 4.634641e-77 | -8.615850e-47 |
| Msa0046060 | Msa0463990 | 0.811584 | 6.507821e-51 | -8.615850e-47 |
| Msa0046060 | Msa0467800 | 0.819101 | 1.385701e-52 | -8.615850e-47 |
| Msa0046060 | Msa0467880 | 0.822014 | 2.970293e-53 | -8.615850e-47 |
| Msa0046060 | Msa0480150 | 0.828146 | 1.057074e-54 | -8.615850e-47 |
| Msa0046060 | Msa0485280 | 0.806395 | 8.399286e-50 | -8.615850e-47 |
| Msa0046060 | Msa0505390 | 0.801321 | 9.512697e-49 | -8.615850e-47 |
| Msa0046060 | Msa0509540 | 0.839905 | 1.197604e-57 | -8.615850e-47 |
| Msa0046060 | Msa0512130 | 0.810220 | 1.284359e-50 | -8.615850e-47 |
| Msa0046060 | Msa0512310 | 0.820694 | 5.991717e-53 | -8.615850e-47 |
| Msa0046060 | Msa0514260 | 0.813274 | 2.780738e-51 | -8.615850e-47 |
| Msa0046060 | Msa0528740 | 0.803755 | 2.995912e-49 | -8.615850e-47 |
| Msa0046060 | Msa0528870 | 0.808669 | 2.764678e-50 | -8.615850e-47 |
| Msa0046060 | Msa0530930 | 0.815513 | 8.897063e-52 | -8.615850e-47 |
| Msa0046060 | Msa0532840 | 0.815680 | 8.166484e-52 | -8.615850e-47 |
| Msa0046060 | Msa0533010 | 0.813723 | 2.215152e-51 | -8.615850e-47 |
| Msa0046060 | Msa0542040 | 0.816189 | 6.288077e-52 | -8.615850e-47 |
| Msa0046060 | Msa0546380 | 0.822367 | 2.461126e-53 | -8.615850e-47 |
| Msa0046060 | Msa0546740 | 0.809908 | 1.499500e-50 | -8.615850e-47 |
| Msa0046060 | Msa0550110 | 0.825685 | 4.096798e-54 | -8.615850e-47 |
| Msa0046060 | Msa0575450 | 0.801245 | 9.862416e-49 | -8.615850e-47 |
| Msa0046060 | Msa0577230 | 0.815870 | 7.407403e-52 | -8.615850e-47 |
| Msa0046060 | Msa0579610 | 0.805027 | 1.627249e-49 | -8.615850e-47 |
| Msa0046060 | Msa0587900 | 0.830417 | 2.972115e-55 | -8.615850e-47 |
| Msa0046060 | Msa0589290 | 0.817881 | 2.619562e-52 | -8.615850e-47 |
| Msa0046060 | Msa0598250 | 0.802338 | 5.882434e-49 | -8.615850e-47 |
| Msa0046060 | Msa0605620 | 0.804397 | 2.202934e-49 | -8.615850e-47 |
| Msa0046060 | Msa0607280 | 0.820765 | 5.770611e-53 | -8.615850e-47 |
| Msa0046060 | Msa0607300 | 0.812008 | 5.262399e-51 | -8.615850e-47 |
| Msa0046060 | Msa0609990 | 0.825357 | 4.899484e-54 | -8.615850e-47 |
| Msa0046060 | Msa0614230 | 0.810781 | 9.715857e-51 | -8.615850e-47 |
| Msa0046060 | Msa0619330 | 0.821871 | 3.206739e-53 | -8.615850e-47 |
| Msa0046060 | Msa0628060 | 0.820329 | 7.267072e-53 | -8.615850e-47 |
| Msa0046060 | Msa0629500 | 0.803039 | 4.216881e-49 | -8.615850e-47 |
| Msa0046060 | Msa0638710 | 0.802165 | 6.385567e-49 | -8.615850e-47 |
| Msa0046060 | Msa0659040 | 0.802591 | 5.215934e-49 | -8.615850e-47 |
| Msa0046060 | Msa0660820 | 0.816974 | 4.192479e-52 | -8.615850e-47 |
| Msa0046060 | Msa0665760 | 0.805921 | 1.056847e-49 | -8.615850e-47 |
| Msa0046060 | Msa0667970 | 0.835556 | 1.566178e-56 | -8.615850e-47 |
| Msa0046060 | Msa0681890 | 0.810151 | 1.329086e-50 | -8.615850e-47 |
| Msa0046060 | Msa0686610 | 0.800389 | 1.474929e-48 | -8.615850e-47 |
| Msa0046060 | Msa0690350 | 0.811910 | 5.527188e-51 | -8.615850e-47 |
| Msa0046060 | Msa0690720 | 0.811428 | 7.036504e-51 | -8.615850e-47 |
| Msa0046060 | Msa0702070 | 0.807272 | 5.480337e-50 | -8.615850e-47 |
| Msa0046060 | Msa0703720 | 0.807288 | 5.438491e-50 | -8.615850e-47 |
| Msa0046060 | Msa0703760 | 0.808889 | 2.480832e-50 | -8.615850e-47 |
| Msa0046060 | Msa0707780 | 0.803328 | 3.673302e-49 | -8.615850e-47 |
| Msa0046060 | Msa0709480 | 0.828296 | 9.729507e-55 | -8.615850e-47 |
| Msa0046060 | Msa0719340 | 0.809987 | 1.442170e-50 | -8.615850e-47 |
| Msa0046060 | Msa0720270 | 0.812290 | 4.567062e-51 | -8.615850e-47 |
| Msa0046060 | Msa0730180 | 0.804306 | 2.301857e-49 | -8.615850e-47 |
| Msa0046060 | Msa0733000 | 0.810019 | 1.419515e-50 | -8.615850e-47 |
| Msa0046060 | Msa0750380 | 0.800777 | 1.229382e-48 | -8.615850e-47 |
| Msa0046060 | Msa0780140 | 0.819907 | 9.077348e-53 | -8.615850e-47 |
| Msa0046060 | Msa0790180 | 0.802961 | 4.375356e-49 | -8.615850e-47 |
| Msa0046060 | Msa0790830 | 0.814632 | 1.395721e-51 | -8.615850e-47 |
| Msa0046060 | Msa0793090 | 0.890439 | 9.846892e-74 | -8.615850e-47 |
| Msa0046060 | Msa0811510 | 0.836453 | 9.274818e-57 | -8.615850e-47 |
| Msa0046060 | Msa0812660 | 0.809628 | 1.722456e-50 | -8.615850e-47 |
| Msa0046060 | Msa0830720 | 0.816725 | 4.768134e-52 | -8.615850e-47 |
| Msa0046060 | Msa0851740 | 0.831765 | 1.386963e-55 | -8.615850e-47 |
| Msa0046060 | Msa0863250 | 0.813232 | 2.840323e-51 | -8.615850e-47 |
| Msa0046060 | Msa0890250 | 0.801510 | 8.702967e-49 | -8.615850e-47 |
| Msa0046060 | Msa0907700 | 0.803843 | 2.872179e-49 | -8.615850e-47 |
| Msa0046060 | Msa0909710 | 0.804186 | 2.437696e-49 | -8.615850e-47 |
| Msa0046060 | Msa0925160 | 0.829391 | 5.285319e-55 | -8.615850e-47 |
| Msa0046060 | Msa0934830 | 0.844926 | 5.586931e-59 | -8.615850e-47 |
| Msa0046060 | Msa0937940 | 0.813549 | 2.419984e-51 | -8.615850e-47 |
| Msa0046060 | Msa0955260 | 0.825928 | 3.586151e-54 | -8.615850e-47 |
| Msa0046060 | Msa0966410 | 0.804224 | 2.393262e-49 | -8.615850e-47 |
| Msa0046060 | Msa0971860 | 0.825316 | 5.010164e-54 | -8.615850e-47 |
| Msa0046060 | Msa0975080 | 0.810857 | 9.356255e-51 | -8.615850e-47 |
| Msa0046060 | Msa1027790 | 0.805569 | 1.252877e-49 | -8.615850e-47 |
| Msa0046060 | Msa1029320 | 0.832016 | 1.202408e-55 | -8.615850e-47 |
| Msa0046060 | Msa1030870 | 0.818289 | 2.118041e-52 | -8.615850e-47 |
| Msa0046060 | Msa1038320 | 0.807236 | 5.577407e-50 | -8.615850e-47 |
| Msa0046060 | Msa1043870 | 0.804150 | 2.479839e-49 | -8.615850e-47 |
| Msa0046060 | Msa1056640 | 0.812037 | 5.184916e-51 | -8.615850e-47 |
| Msa0046060 | Msa1080620 | 0.816566 | 5.176365e-52 | -8.615850e-47 |
| Msa0046060 | Msa1080690 | 0.812427 | 4.262087e-51 | -8.615850e-47 |
| Msa0046060 | Msa1080840 | 0.819428 | 1.167584e-52 | -8.615850e-47 |
| Msa0046060 | Msa1081850 | 0.808627 | 2.822258e-50 | -8.615850e-47 |
| Msa0046060 | Msa1084490 | 0.820662 | 6.092576e-53 | -8.615850e-47 |
| Msa0046060 | Msa1112610 | 0.809705 | 1.658459e-50 | -8.615850e-47 |
| Msa0046060 | Msa1115580 | 0.817240 | 3.653714e-52 | -8.615850e-47 |
| Msa0046060 | Msa1118980 | 0.822778 | 1.974462e-53 | -8.615850e-47 |
| Msa0046060 | Msa1125780 | 0.830907 | 2.254777e-55 | -8.615850e-47 |
| Msa0046060 | Msa1125950 | 0.831658 | 1.473047e-55 | -8.615850e-47 |
| Msa0046060 | Msa1132820 | 0.812459 | 4.194313e-51 | -8.615850e-47 |
| Msa0046060 | Msa1144950 | 0.800949 | 1.133797e-48 | -8.615850e-47 |
| Msa0046060 | Msa1166180 | 0.822903 | 1.846753e-53 | -8.615850e-47 |
| Msa0046060 | Msa1166280 | 0.819900 | 9.108548e-53 | -8.615850e-47 |
| Msa0046060 | Msa1171340 | 0.836659 | 8.222599e-57 | -8.615850e-47 |
| Msa0046060 | Msa1183390 | 0.817088 | 3.953102e-52 | -8.615850e-47 |
| Msa0046060 | Msa1210640 | 0.834889 | 2.308422e-56 | -8.615850e-47 |
| Msa0046060 | Msa1210770 | 0.828799 | 7.351965e-55 | -8.615850e-47 |
| Msa0046060 | Msa1220740 | 0.809103 | 2.232579e-50 | -8.615850e-47 |
| Msa0046060 | Msa1222580 | 0.803581 | 3.255339e-49 | -8.615850e-47 |
| Msa0046060 | Msa1238700 | 0.832065 | 1.168971e-55 | -8.615850e-47 |
| Msa0046060 | Msa1250670 | 0.805362 | 1.385032e-49 | -8.615850e-47 |
| Msa0046060 | Msa1262310 | 0.818973 | 1.481848e-52 | -8.615850e-47 |
| Msa0046060 | Msa1264560 | 0.830237 | 3.289232e-55 | -8.615850e-47 |
| Msa0046060 | Msa1271510 | 0.805329 | 1.406700e-49 | -8.615850e-47 |
| Msa0046060 | Msa1299160 | 0.840519 | 8.282421e-58 | -8.615850e-47 |
| Msa0046060 | Msa1305520 | 0.810151 | 1.329442e-50 | -8.615850e-47 |
| Msa0046060 | Msa1309100 | 0.809027 | 2.317680e-50 | -8.615850e-47 |
| Msa0046060 | Msa1309360 | 0.818715 | 1.696498e-52 | -8.615850e-47 |
| Msa0046060 | Msa1326000 | 0.815338 | 9.729190e-52 | -8.615850e-47 |
| Msa0046060 | Msa1334650 | 0.803773 | 2.970729e-49 | -8.615850e-47 |
| Msa0046060 | Msa1349360 | 0.804076 | 2.569353e-49 | -8.615850e-47 |
| Msa0046060 | Msa1373380 | 0.898602 | 4.515914e-77 | -8.615850e-47 |
| Msa0046060 | Msa1375630 | 0.803697 | 3.080033e-49 | -8.615850e-47 |
| Msa0046060 | Msa1376530 | 0.808779 | 2.618696e-50 | -8.615850e-47 |
| Msa0046060 | Msa1376640 | 0.814695 | 1.351618e-51 | -8.615850e-47 |
| Msa0046060 | Msa1381130 | 0.816999 | 4.139725e-52 | -8.615850e-47 |
| Msa0046060 | Msa1404370 | 0.800703 | 1.272450e-48 | -8.615850e-47 |
| Msa0046060 | Msa1405770 | 0.824756 | 6.792773e-54 | -8.615850e-47 |
| Msa0046060 | Msa1407710 | 0.800280 | 1.551948e-48 | -8.615850e-47 |
| Msa0046060 | Msa1410170 | 0.813419 | 2.584290e-51 | -8.615850e-47 |
| Msa0046060 | Msa1412080 | 0.821601 | 3.701451e-53 | -8.615850e-47 |
| Msa0046060 | Msa1412520 | 0.831891 | 1.290691e-55 | -8.615850e-47 |
| Msa0046060 | Msa1418200 | 0.822910 | 1.839281e-53 | -8.615850e-47 |
| Msa0046060 | Msa1420520 | 0.819848 | 9.361380e-53 | -8.615850e-47 |
| Msa0046060 | Msa1422490 | 0.820660 | 6.098394e-53 | -8.615850e-47 |
| Msa0046060 | Msa1422500 | 0.826720 | 2.323099e-54 | -8.615850e-47 |
| Msa0046060 | Msa1423190 | 0.829924 | 3.920695e-55 | -8.615850e-47 |
| Msa0046060 | Msa1430760 | 0.803078 | 4.139376e-49 | -8.615850e-47 |
| Msa0046060 | Msa1431730 | 0.815683 | 8.154000e-52 | -8.615850e-47 |
| Msa0046060 | Msa1432640 | 0.808324 | 3.274693e-50 | -8.615850e-47 |
| Msa0046060 | Msa1434020 | 0.803405 | 3.540956e-49 | -8.615850e-47 |
| Msa0046060 | Msa1439120 | 0.806157 | 9.427950e-50 | -8.615850e-47 |
| Msa0046060 | Msa1440180 | 0.841176 | 5.568482e-58 | -8.615850e-47 |
| Msa0046060 | Msa1440220 | 0.817189 | 3.751837e-52 | -8.615850e-47 |
| Msa0046060 | Msa1444450 | 0.831522 | 1.591224e-55 | -8.615850e-47 |
| Msa0046060 | Msa1449740 | 0.842138 | 3.104284e-58 | -8.615850e-47 |
| Msa0046060 | Msa1455660 | 0.807142 | 5.840095e-50 | -8.615850e-47 |
| Msa0046060 | Msa1458330 | 0.828331 | 9.540818e-55 | -8.615850e-47 |
| Msa0046060 | Msa1458920 | 0.815372 | 9.560300e-52 | -8.615850e-47 |
| Msa0046060 | Msa1464800 | 0.803175 | 3.951121e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046060 | MtrunA17_Chr1g0213311 | 83.831 | 402 | 15 | 3 | 1 | 352 | 1 | 402 | 0.0 | 670 |
| Msa0046060 | MtrunA17_Chr3g0079841 | 43.846 | 260 | 120 | 6 | 24 | 281 | 29 | 264 | 2.75e-59 | 192 |
| Msa0046060 | MtrunA17_Chr7g0214501 | 44.257 | 296 | 71 | 8 | 85 | 332 | 1 | 250 | 4.85e-55 | 182 |
| Msa0046060 | MtrunA17_Chr3g0143581 | 51.064 | 141 | 66 | 2 | 23 | 162 | 19 | 157 | 4.00e-44 | 150 |
| Msa0046060 | MtrunA17_Chr7g0214491 | 65.882 | 85 | 28 | 1 | 1 | 84 | 1 | 85 | 2.70e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046060 | AT1G04880.1 | 47.185 | 373 | 124 | 13 | 1 | 313 | 1 | 360 | 7.34e-92 | 282 |
| Msa0046060 | AT1G76110.1 | 36.937 | 333 | 143 | 10 | 2 | 285 | 12 | 326 | 1.33e-54 | 182 |
| Msa0046060 | AT3G13350.1 | 37.162 | 296 | 119 | 5 | 29 | 281 | 34 | 305 | 1.33e-52 | 177 |
| Msa0046060 | AT1G55650.1 | 35.172 | 290 | 150 | 8 | 12 | 281 | 11 | 282 | 8.11e-46 | 159 |
Find 105 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCAGGATTCCTGTTATT+GGG | 0.246287 | 1_1:-78069685 | Msa0046060:intron |
| CACAGTGATCAACTGGGTTT+TGG | 0.268345 | 1_1:-78065975 | Msa0046060:three_prime_UTR |
| TATTGCAGGATTCCTGTTAT+TGG | 0.282044 | 1_1:-78069686 | Msa0046060:intron |
| AAAAGGTAAAACAAACAAAA+AGG | 0.325022 | 1_1:+78070111 | None:intergenic |
| TGTGGATTCATTGCCTGTTA+TGG | 0.326537 | 1_1:-78066155 | Msa0046060:CDS |
| GAAGCATTTGTAGCCGTTGA+TGG | 0.327945 | 1_1:+78069184 | None:intergenic |
| AATAATAGATTTGTTCATAA+TGG | 0.330253 | 1_1:+78069125 | None:intergenic |
| GTACCTCTCTTTGTCCTTCA+CGG | 0.336959 | 1_1:+78066378 | None:intergenic |
| TCAGTTTGAGGTGTTTGTTT+TGG | 0.337746 | 1_1:-78065941 | Msa0046060:three_prime_UTR |
| CACAAATCACAGTGATCAAC+TGG | 0.338301 | 1_1:-78065982 | Msa0046060:three_prime_UTR |
| GTATGTGAAAACTGCATCTT+TGG | 0.346993 | 1_1:+78068948 | None:intergenic |
| GTGGATTCATTGCCTGTTAT+GGG | 0.359014 | 1_1:-78066154 | Msa0046060:CDS |
| CGGCAGGATCTCAGGTTGTC+GGG | 0.362545 | 1_1:-78067087 | Msa0046060:intron |
| ACCATCCAGTATTTGTAGAT+AGG | 0.366275 | 1_1:+78070210 | None:intergenic |
| TATCCACTTCTGTTTGGTTT+GGG | 0.366843 | 1_1:+78066852 | None:intergenic |
| AGAAAGAAGAAATGTTAGCT+AGG | 0.370972 | 1_1:-78066093 | Msa0046060:three_prime_UTR |
| TTCCGCGTCTGATCTCTAAA+TGG | 0.372840 | 1_1:-78065862 | Msa0046060:three_prime_UTR |
| GTATCCACTTCTGTTTGGTT+TGG | 0.377653 | 1_1:+78066851 | None:intergenic |
| AGATCATTAAAGATAGAAAA+TGG | 0.378478 | 1_1:-78069234 | Msa0046060:CDS |
| GCTCAAAGCTGTCTCTTTCA+TGG | 0.381404 | 1_1:+78069997 | None:intergenic |
| GCATTCAACATGTCAGTATC+TGG | 0.384305 | 1_1:+78066268 | None:intergenic |
| TGCATCTTTGGAGCAGGAGC+TGG | 0.387029 | 1_1:+78068960 | None:intergenic |
| CAGGTTGTCGGGGTCATTGA+TGG | 0.395002 | 1_1:-78067076 | Msa0046060:CDS |
| GCTGAATATATGATCCTAAC+AGG | 0.396426 | 1_1:-78065899 | Msa0046060:three_prime_UTR |
| TCTGTTTGGTTTGGGTGAGC+AGG | 0.402908 | 1_1:+78066860 | None:intergenic |
| TATCTAGTTACTGTCACAAT+TGG | 0.419081 | 1_1:-78067037 | Msa0046060:CDS |
| ATCTGTTTCAGCATCCTGTT+AGG | 0.421335 | 1_1:+78065885 | None:intergenic |
| TCAGCACCAACTCCCATAAC+AGG | 0.424034 | 1_1:+78066142 | None:intergenic |
| AAATTGTATCCACTTCTGTT+TGG | 0.426908 | 1_1:+78066846 | None:intergenic |
| TCATTGCCTGTTATGGGAGT+TGG | 0.435413 | 1_1:-78066148 | Msa0046060:CDS |
| ATCATCTTCGGCAGGATCTC+AGG | 0.435568 | 1_1:-78067095 | Msa0046060:intron |
| ATTGATGGGAAATTTGATAG+TGG | 0.443834 | 1_1:-78067061 | Msa0046060:CDS |
| GAAAGAAGAAATGTTAGCTA+GGG | 0.444580 | 1_1:-78066092 | Msa0046060:three_prime_UTR |
| CTGTGATTTGTGCTTAAAGT+AGG | 0.451073 | 1_1:+78065993 | None:intergenic |
| CCATCCAGTATTTGTAGATA+GGG | 0.451719 | 1_1:+78070211 | None:intergenic |
| AGAGAGGTACATAACAGAAA+TGG | 0.452384 | 1_1:-78066365 | Msa0046060:CDS |
| TCGGCAGGATCTCAGGTTGT+CGG | 0.453538 | 1_1:-78067088 | Msa0046060:intron |
| TGTTAGCTAGGGAATGGAAT+AGG | 0.454932 | 1_1:-78066081 | Msa0046060:three_prime_UTR |
| TGTTGTTAGCAGGAACACTA+TGG | 0.456419 | 1_1:+78066951 | None:intergenic |
| GCTGTCTCTTTCATGGGTAA+TGG | 0.461532 | 1_1:+78070004 | None:intergenic |
| CAAGCTCTTCATACTTAGCT+TGG | 0.463066 | 1_1:-78069921 | Msa0046060:CDS |
| GAACATACCGGAAGTTGTAT+TGG | 0.464656 | 1_1:+78069084 | None:intergenic |
| TGGTGGGATGCTGGCAGCAC+AGG | 0.472613 | 1_1:+78066971 | None:intergenic |
| AACTGGACCAATACAACTTC+CGG | 0.475197 | 1_1:-78069091 | Msa0046060:intron |
| AGTTACTGTCACAATTGGTT+CGG | 0.475294 | 1_1:-78067032 | Msa0046060:CDS |
| TTCACCTATGGCAACATATG+AGG | 0.483062 | 1_1:-78069960 | Msa0046060:CDS |
| AACATGTCAGTATCTGGTTC+AGG | 0.486501 | 1_1:+78066274 | None:intergenic |
| GCGGTCACGTTGTTGTTAGC+AGG | 0.489436 | 1_1:+78066941 | None:intergenic |
| CAAGCTAAGTATGAAGAGCT+TGG | 0.497014 | 1_1:+78069922 | None:intergenic |
| GCGCCACCATTAACAAGAAA+AGG | 0.497363 | 1_1:+78070094 | None:intergenic |
| CTTTGGAGCAGGAGCTGGGA+TGG | 0.499860 | 1_1:+78068965 | None:intergenic |
| GGAACACTATGGTGGGATGC+TGG | 0.501068 | 1_1:+78066962 | None:intergenic |
| TTTAACTGTTGAAAGACAGC+TGG | 0.504737 | 1_1:+78068909 | None:intergenic |
| CCAGGGAGCCTACATGAACT+TGG | 0.508162 | 1_1:+78069874 | None:intergenic |
| TGATGACTATGAAGATGATA+AGG | 0.508495 | 1_1:-78066197 | Msa0046060:CDS |
| GTGTCCATCGTCGCCGACGC+AGG | 0.509894 | 1_1:-78066910 | Msa0046060:CDS |
| TTTGTTGAAGTGACTTCTCG+TGG | 0.510774 | 1_1:-78069635 | Msa0046060:CDS |
| GGAGAAGCTCCACACTCTCA+TGG | 0.512213 | 1_1:-78069900 | Msa0046060:CDS |
| AAGAAATGTTAGCTAGGGAA+TGG | 0.514183 | 1_1:-78066087 | Msa0046060:three_prime_UTR |
| AAGCTAAGTATGAAGAGCTT+GGG | 0.516105 | 1_1:+78069923 | None:intergenic |
| GCATCTTTGGAGCAGGAGCT+GGG | 0.522935 | 1_1:+78068961 | None:intergenic |
| TGGTGAATATCCTTCACCTA+TGG | 0.528306 | 1_1:-78069972 | Msa0046060:CDS |
| CCCTATCTACAAATACTGGA+TGG | 0.528432 | 1_1:-78070211 | Msa0046060:five_prime_UTR |
| TTGCAGGATTCCTGTTATTG+GGG | 0.528895 | 1_1:-78069684 | Msa0046060:intron |
| TTTCTTGTTAATGGTGGCGC+AGG | 0.531689 | 1_1:-78070091 | Msa0046060:five_prime_UTR |
| TGAATATATTAAGTTGTGAA+TGG | 0.532675 | 1_1:-78070053 | Msa0046060:exon |
| GAAAACTGCATCTTTGGAGC+AGG | 0.538241 | 1_1:+78068954 | None:intergenic |
| CTCAAAGCTGTCTCTTTCAT+GGG | 0.539064 | 1_1:+78069998 | None:intergenic |
| TCTTCCTGCGTCGGCGACGA+TGG | 0.540297 | 1_1:+78066906 | None:intergenic |
| TTGAAGTGACTTCTCGTGGA+GGG | 0.541093 | 1_1:-78069631 | Msa0046060:CDS |
| CCGTCTGAACTACTCTGCTC+CGG | 0.545473 | 1_1:+78066223 | None:intergenic |
| GATCATTCTTCAACTTCTCA+CGG | 0.547465 | 1_1:+78066335 | None:intergenic |
| GTTAATTCTGCTCCGCCTGA+AGG | 0.550930 | 1_1:-78068885 | Msa0046060:intron |
| AGGTTGTCGGGGTCATTGAT+GGG | 0.564891 | 1_1:-78067075 | Msa0046060:CDS |
| TCATATGTTGCCATAGGTGA+AGG | 0.568033 | 1_1:+78069962 | None:intergenic |
| TCTCTGATTTCTTCCTGCGT+CGG | 0.568830 | 1_1:+78066897 | None:intergenic |
| GGCAGACTCTCTTCAAACTC+CGG | 0.569431 | 1_1:-78066242 | Msa0046060:CDS |
| GAGAAGCTCCACACTCTCAT+GGG | 0.571795 | 1_1:-78069899 | Msa0046060:CDS |
| TCAGGAAATCGCTGTTGAAG+TGG | 0.581487 | 1_1:+78066292 | None:intergenic |
| AAAGAGACAGCTTTGAGCCA+TGG | 0.588397 | 1_1:-78069992 | Msa0046060:CDS |
| TGTTAGCAGGAACACTATGG+TGG | 0.605828 | 1_1:+78066954 | None:intergenic |
| ATTGTCAAAACTCAAATCAA+CGG | 0.606958 | 1_1:-78065793 | Msa0046060:three_prime_UTR |
| AAGACAGCTGGTTGAACTTG+TGG | 0.608568 | 1_1:+78068921 | None:intergenic |
| CCGGAGCAGAGTAGTTCAGA+CGG | 0.612929 | 1_1:-78066223 | Msa0046060:CDS |
| CTATGAAGATGATAAGGCGA+AGG | 0.615408 | 1_1:-78066191 | Msa0046060:CDS |
| TTATCAAGATAAAGCCGTGA+AGG | 0.616173 | 1_1:-78066392 | Msa0046060:CDS |
| GCTGAGACTTTGAGTTGCAG+TGG | 0.618681 | 1_1:-78066019 | Msa0046060:three_prime_UTR |
| ACCTCCTCATATGTTGCCAT+AGG | 0.625420 | 1_1:+78069956 | None:intergenic |
| ACCTATGGCAACATATGAGG+AGG | 0.630539 | 1_1:-78069957 | Msa0046060:CDS |
| AACAACGTGACCGCCTCTGT+CGG | 0.631474 | 1_1:-78066932 | Msa0046060:CDS |
| GTTGAAGTGACTTCTCGTGG+AGG | 0.634997 | 1_1:-78069632 | Msa0046060:CDS |
| GGCAGGATCTCAGGTTGTCG+GGG | 0.638448 | 1_1:-78067086 | Msa0046060:intron |
| TGCAGGATTCCTGTTATTGG+GGG | 0.639336 | 1_1:-78069683 | Msa0046060:intron |
| AAGCCGTGAAGGACAAAGAG+AGG | 0.641251 | 1_1:-78066381 | Msa0046060:CDS |
| ATTGGTTCGGAGAAACTCAA+AGG | 0.644223 | 1_1:-78067019 | Msa0046060:CDS |
| GCGACGATGGACACCGACAG+AGG | 0.659779 | 1_1:+78066919 | None:intergenic |
| TACTGACATGTTGAATGCTG+AGG | 0.661079 | 1_1:-78066263 | Msa0046060:CDS |
| GAGAAGTCACTTCAACAAAG+AGG | 0.662036 | 1_1:+78069639 | None:intergenic |
| ACTTGGTGCCCATGAGAGTG+TGG | 0.664789 | 1_1:+78069891 | None:intergenic |
| ACGATGGACACCGACAGAGG+CGG | 0.677611 | 1_1:+78066922 | None:intergenic |
| GCAAAGCAAAGACCTTCAGG+CGG | 0.704080 | 1_1:+78068873 | None:intergenic |
| ACAAATCACAGTGATCAACT+GGG | 0.709759 | 1_1:-78065981 | Msa0046060:three_prime_UTR |
| GACCATTTAGAGATCAGACG+CGG | 0.710134 | 1_1:+78065860 | None:intergenic |
| TAGGTGAAGGATATTCACCA+TGG | 0.732815 | 1_1:+78069975 | None:intergenic |
| GTTAGCAGGAACACTATGGT+GGG | 0.739497 | 1_1:+78066955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTTTTATTTTAAGATG+TGG | - | chr1_1:78066188-78066207 | Msa0046060:CDS | 15.0% |
| !!! | GATTATAATTTCAATTTTGT+TGG | - | chr1_1:78066415-78066434 | Msa0046060:intron | 15.0% |
| !!! | AATAATAGATTTGTTCATAA+TGG | + | chr1_1:78066883-78066902 | None:intergenic | 15.0% |
| !!! | TTAGTAGTTAATCTTATTTT+GGG | + | chr1_1:78067167-78067186 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGAGAATATTTT+AGG | - | chr1_1:78067214-78067233 | Msa0046060:intron | 15.0% |
| !! | AAAAAAACATACAAAAGATT+AGG | + | chr1_1:78068789-78068808 | None:intergenic | 15.0% |
| !! | ATAAACAATACTAGTTATTA+TGG | + | chr1_1:78068867-78068886 | None:intergenic | 15.0% |
| !! | AAAAGGTAAAACAAACAAAA+AGG | + | chr1_1:78065897-78065916 | None:intergenic | 20.0% |
| !!! | TGAATATATTAAGTTGTGAA+TGG | - | chr1_1:78065952-78065971 | Msa0046060:three_prime_UTR | 20.0% |
| !! | TTGCAATTACAAAAAACATT+TGG | - | chr1_1:78066291-78066310 | Msa0046060:CDS | 20.0% |
| !!! | ATTCTTTTGAATCATAACTT+TGG | - | chr1_1:78066689-78066708 | Msa0046060:intron | 20.0% |
| !! | AGATCATTAAAGATAGAAAA+TGG | - | chr1_1:78066771-78066790 | Msa0046060:intron | 20.0% |
| !! | TTCCAATTTATACATTAGAA+GGG | + | chr1_1:78066984-78067003 | None:intergenic | 20.0% |
| !! | TTTCCAATTTATACATTAGA+AGG | + | chr1_1:78066985-78067004 | None:intergenic | 20.0% |
| !! | ATAAATTGGAAATTTCACTA+TGG | - | chr1_1:78066993-78067012 | Msa0046060:CDS | 20.0% |
| !!! | GTTAGTAGTTAATCTTATTT+TGG | + | chr1_1:78067168-78067187 | None:intergenic | 20.0% |
| !! | TTAGGTTATGTTTAAATTGA+TGG | - | chr1_1:78067232-78067251 | Msa0046060:intron | 20.0% |
| !! | TTATGTTTAAATTGATGGAA+AGG | - | chr1_1:78067237-78067256 | Msa0046060:intron | 20.0% |
| !! | TATGTTTAAATTGATGGAAA+GGG | - | chr1_1:78067238-78067257 | Msa0046060:intron | 20.0% |
| !! | TCATTATTTGAGAATTGAAA+TGG | + | chr1_1:78067618-78067637 | None:intergenic | 20.0% |
| !! | TCAATTCTCAAATAATGAAA+TGG | - | chr1_1:78067620-78067639 | Msa0046060:intron | 20.0% |
| !!! | TAGTTTTCAATCTAGATATA+TGG | - | chr1_1:78067744-78067763 | Msa0046060:intron | 20.0% |
| !! | TATTATGAGCTTACATTTAA+TGG | - | chr1_1:78068011-78068030 | Msa0046060:intron | 20.0% |
| !! | ATTATGAGCTTACATTTAAT+GGG | - | chr1_1:78068012-78068031 | Msa0046060:intron | 20.0% |
| !! | CAATCCTATATTAAGTTTAA+AGG | + | chr1_1:78068647-78068666 | None:intergenic | 20.0% |
| ! | AACAAACAAAAAGGAGAAAT+AGG | + | chr1_1:78065888-78065907 | None:intergenic | 25.0% |
| !! | GTTTTACCTTTTCTTGTTAA+TGG | - | chr1_1:78065905-78065924 | Msa0046060:three_prime_UTR | 25.0% |
| ! | ATTCGTAGTTTATAAATCCA+GGG | + | chr1_1:78066151-78066170 | None:intergenic | 25.0% |
| ! | AATTCGTAGTTTATAAATCC+AGG | + | chr1_1:78066152-78066171 | None:intergenic | 25.0% |
| ! | TGCAAAGTTATACAAGTAAA+TGG | + | chr1_1:78066276-78066295 | None:intergenic | 25.0% |
| !!! | AACATTTGGAATTTTATTGC+AGG | - | chr1_1:78066305-78066324 | Msa0046060:CDS | 25.0% |
| !! | ACTGATAATGTCCAAAATAT+AGG | - | chr1_1:78066485-78066504 | Msa0046060:intron | 25.0% |
| !! | AGTTTTCAATTTTCCATCAA+CGG | - | chr1_1:78066808-78066827 | Msa0046060:intron | 25.0% |
| ! | TCCAATTTATACATTAGAAG+GGG | + | chr1_1:78066983-78067002 | None:intergenic | 25.0% |
| !! | TTCAATTTCCTTTTTCTTAG+TGG | + | chr1_1:78067190-78067209 | None:intergenic | 25.0% |
| ! | ATGTTTAAATTGATGGAAAG+GGG | - | chr1_1:78067239-78067258 | Msa0046060:intron | 25.0% |
| ! | TCAAATTTCACTACTCTATA+GGG | + | chr1_1:78067468-78067487 | None:intergenic | 25.0% |
| ! | TTCAAATTTCACTACTCTAT+AGG | + | chr1_1:78067469-78067488 | None:intergenic | 25.0% |
| !! | TGCTATTTAGTACAAAATAG+CGG | - | chr1_1:78067512-78067531 | Msa0046060:intron | 25.0% |
| !! | TAAGTCAATTTTATCAATGG+AGG | + | chr1_1:78067591-78067610 | None:intergenic | 25.0% |
| !! | AGGTAAGTCAATTTTATCAA+TGG | + | chr1_1:78067594-78067613 | None:intergenic | 25.0% |
| ! | TATTTGAGAATTGAAATGGT+AGG | + | chr1_1:78067614-78067633 | None:intergenic | 25.0% |
| ! | ATTGTTTGATTGTTTCATTG+AGG | + | chr1_1:78067656-78067675 | None:intergenic | 25.0% |
| ! | TCAATGAAACAATCAAACAA+TGG | - | chr1_1:78067655-78067674 | Msa0046060:intron | 25.0% |
| ! | AAACAATCAAACAATGGAAT+AGG | - | chr1_1:78067661-78067680 | Msa0046060:intron | 25.0% |
| ! | AACAATCAAACAATGGAATA+GGG | - | chr1_1:78067662-78067681 | Msa0046060:intron | 25.0% |
| ! | CTATTTAACGATTAGAGAAA+TGG | + | chr1_1:78067727-78067746 | None:intergenic | 25.0% |
| ! | TAATATAGTATCTTTCTCCT+AGG | - | chr1_1:78067784-78067803 | Msa0046060:intron | 25.0% |
| !! | ATGATTTTCCATGACTTAAT+CGG | - | chr1_1:78067808-78067827 | Msa0046060:intron | 25.0% |
| !! | TGATGGTCTTTTAAATCTAT+TGG | - | chr1_1:78067845-78067864 | Msa0046060:intron | 25.0% |
| !!! | TGCCTTATTTTATCATCAAA+AGG | - | chr1_1:78067961-78067980 | Msa0046060:intron | 25.0% |
| !!! | GTCCTTTTGATGATAAAATA+AGG | + | chr1_1:78067966-78067985 | None:intergenic | 25.0% |
| !!! | TAGGTAAATGTTAGTTTTCA+AGG | - | chr1_1:78068124-78068143 | Msa0046060:intron | 25.0% |
| !!! | AAGGAAGTTTTGTTTTCATT+TGG | + | chr1_1:78068263-78068282 | None:intergenic | 25.0% |
| !! | TGTAAGATTTGTGCTATTAT+AGG | + | chr1_1:78068375-78068394 | None:intergenic | 25.0% |
| !!! | ACATTTTAAGTTTAGTATCG+TGG | - | chr1_1:78068392-78068411 | Msa0046060:intron | 25.0% |
| !!! | AAAAGTACTAGAGTGAAAAT+TGG | - | chr1_1:78068465-78068484 | Msa0046060:intron | 25.0% |
| !! | AAAGTACTAGAGTGAAAATT+GGG | - | chr1_1:78068466-78068485 | Msa0046060:intron | 25.0% |
| ! | ACATTTATCACTAAATCTCT+CGG | + | chr1_1:78068620-78068639 | None:intergenic | 25.0% |
| ! | TCCACCTTTAAACTTAATAT+AGG | - | chr1_1:78068640-78068659 | Msa0046060:intron | 25.0% |
| ! | TCCTATATTAAGTTTAAAGG+TGG | + | chr1_1:78068644-78068663 | None:intergenic | 25.0% |
| ! | AATAGAAAGAATGGTTAACA+GGG | + | chr1_1:78068754-78068773 | None:intergenic | 25.0% |
| ! | AAATAGAAAGAATGGTTAAC+AGG | + | chr1_1:78068755-78068774 | None:intergenic | 25.0% |
| !! | GTTAACCATTCTTTCTATTT+TGG | - | chr1_1:78068755-78068774 | Msa0046060:intron | 25.0% |
| !!! | ATTCTTTCTATTTTGGAAGT+GGG | - | chr1_1:78068762-78068781 | Msa0046060:intron | 25.0% |
| ! | ATAACAGTAAGAGAAGTTAT+AGG | + | chr1_1:78068839-78068858 | None:intergenic | 25.0% |
| !! | TTAACACATCTTTTATGAGT+TGG | - | chr1_1:78069307-78069326 | Msa0046060:intron | 25.0% |
| ! | TAAGTAATCTCTAATCTATC+TGG | - | chr1_1:78069413-78069432 | Msa0046060:intron | 25.0% |
| !!! | TCTAATTTTTAAAGCTTCTG+GGG | + | chr1_1:78069454-78069473 | None:intergenic | 25.0% |
| !!! | CTCTAATTTTTAAAGCTTCT+GGG | + | chr1_1:78069455-78069474 | None:intergenic | 25.0% |
| !!! | TCTCTAATTTTTAAAGCTTC+TGG | + | chr1_1:78069456-78069475 | None:intergenic | 25.0% |
| ! | TCTTGATAAACCTTAAATGT+TGG | + | chr1_1:78069602-78069621 | None:intergenic | 25.0% |
| ! | ATTGTCAAAACTCAAATCAA+CGG | - | chr1_1:78070212-78070231 | Msa0046060:five_prime_UTR | 25.0% |
| ! | TTTTCCCTATCTACAAATAC+TGG | - | chr1_1:78065790-78065809 | Msa0046060:three_prime_UTR | 30.0% |
| ! | TTACCTTTTCTTGTTAATGG+TGG | - | chr1_1:78065908-78065927 | Msa0046060:three_prime_UTR | 30.0% |
| ACGAATTAGATATTGTGACT+TGG | - | chr1_1:78066165-78066184 | Msa0046060:CDS | 30.0% | |
| ! | ATTTTGTTGGTATGAATGCA+TGG | - | chr1_1:78066428-78066447 | Msa0046060:intron | 30.0% |
| CTACATATTCACACAATGTT+TGG | + | chr1_1:78066463-78066482 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTTTCCTACATGTT+TGG | - | chr1_1:78066707-78066726 | Msa0046060:intron | 30.0% |
| !!! | ATTATTTTAAAGCTCGCAAC+TGG | - | chr1_1:78066897-78066916 | Msa0046060:CDS | 30.0% |
| ACTACTAACCACTAAGAAAA+AGG | - | chr1_1:78067179-78067198 | Msa0046060:intron | 30.0% | |
| ! | TTGTTTGGATTGTCTGAAAT+AGG | - | chr1_1:78067273-78067292 | Msa0046060:intron | 30.0% |
| GGTTAAAAACTATAGAGATG+TGG | + | chr1_1:78067336-78067355 | None:intergenic | 30.0% | |
| ! | CTCTATAGTTTTTAACCTGT+CGG | - | chr1_1:78067339-78067358 | Msa0046060:intron | 30.0% |
| ! | TCTATAGTTTTTAACCTGTC+GGG | - | chr1_1:78067340-78067359 | Msa0046060:intron | 30.0% |
| TAATTAACAACAGTAGGGTA+GGG | + | chr1_1:78067424-78067443 | None:intergenic | 30.0% | |
| TTGTTAATTAGTGGCTACAT+CGG | - | chr1_1:78067434-78067453 | Msa0046060:intron | 30.0% | |
| TTAGAGAAATGGAATCAGAA+AGG | + | chr1_1:78067716-78067735 | None:intergenic | 30.0% | |
| TGTATATTCCGATTAAGTCA+TGG | + | chr1_1:78067819-78067838 | None:intergenic | 30.0% | |
| ! | CGGAATATACATGATTTTGA+TGG | - | chr1_1:78067828-78067847 | Msa0046060:intron | 30.0% |
| CATTAAGATGAATGAGTTGT+CGG | - | chr1_1:78068423-78068442 | Msa0046060:intron | 30.0% | |
| AAGTACTAGAGTGAAAATTG+GGG | - | chr1_1:78068467-78068486 | Msa0046060:intron | 30.0% | |
| TAAAGGATATTCCAATAGTC+AGG | - | chr1_1:78068569-78068588 | Msa0046060:intron | 30.0% | |
| AAAGGATATTCCAATAGTCA+GGG | - | chr1_1:78068570-78068589 | Msa0046060:intron | 30.0% | |
| GTATAGGGTTTGATATATGT+TGG | - | chr1_1:78068712-78068731 | Msa0046060:intron | 30.0% | |
| CACTTCCAAAATAGAAAGAA+TGG | + | chr1_1:78068763-78068782 | None:intergenic | 30.0% | |
| !! | CATTCTTTCTATTTTGGAAG+TGG | - | chr1_1:78068761-78068780 | Msa0046060:intron | 30.0% |
| ATTGATGGGAAATTTGATAG+TGG | - | chr1_1:78068944-78068963 | Msa0046060:CDS | 30.0% | |
| TATCTAGTTACTGTCACAAT+TGG | - | chr1_1:78068968-78068987 | Msa0046060:CDS | 30.0% | |
| AAATTGTATCCACTTCTGTT+TGG | + | chr1_1:78069162-78069181 | None:intergenic | 30.0% | |
| CAATAGTTCTTAGACCAAAT+AGG | + | chr1_1:78069385-78069404 | None:intergenic | 30.0% | |
| !!! | CTAATTTTTAAAGCTTCTGG+GGG | + | chr1_1:78069453-78069472 | None:intergenic | 30.0% |
| AAATTAGAGAATGATAGCTC+AGG | - | chr1_1:78069466-78069485 | Msa0046060:intron | 30.0% | |
| AATTAGAGAATGATAGCTCA+GGG | - | chr1_1:78069467-78069486 | Msa0046060:intron | 30.0% | |
| AAGCTCAGATATGCATTATT+TGG | - | chr1_1:78069535-78069554 | Msa0046060:intron | 30.0% | |
| ! | TTAAGTTGCACCAACATTTA+AGG | - | chr1_1:78069589-78069608 | Msa0046060:intron | 30.0% |
| TGATGACTATGAAGATGATA+AGG | - | chr1_1:78069808-78069827 | Msa0046060:intron | 30.0% | |
| AGAAAGAAGAAATGTTAGCT+AGG | - | chr1_1:78069912-78069931 | Msa0046060:CDS | 30.0% | |
| GAAAGAAGAAATGTTAGCTA+GGG | - | chr1_1:78069913-78069932 | Msa0046060:CDS | 30.0% | |
| !! | GCATTTTAGTATTCAGTTTG+AGG | - | chr1_1:78070052-78070071 | Msa0046060:exon | 30.0% |
| CCATCCAGTATTTGTAGATA+GGG | + | chr1_1:78065797-78065816 | None:intergenic | 35.0% | |
| ACCATCCAGTATTTGTAGAT+AGG | + | chr1_1:78065798-78065817 | None:intergenic | 35.0% | |
| AAGCTAAGTATGAAGAGCTT+GGG | + | chr1_1:78066085-78066104 | None:intergenic | 35.0% | |
| TATTGCAGGATTCCTGTTAT+TGG | - | chr1_1:78066319-78066338 | Msa0046060:CDS | 35.0% | |
| ATTGCAGGATTCCTGTTATT+GGG | - | chr1_1:78066320-78066339 | Msa0046060:CDS | 35.0% | |
| ATCACTACAACCAAACATGT+AGG | + | chr1_1:78066720-78066739 | None:intergenic | 35.0% | |
| AGTGATACAGTTACCTTATC+TGG | - | chr1_1:78066734-78066753 | Msa0046060:intron | 35.0% | |
| CAAGACAGATTAACCAGATA+AGG | + | chr1_1:78066750-78066769 | None:intergenic | 35.0% | |
| TGTAGTTCCAATGAACATAC+CGG | + | chr1_1:78066936-78066955 | None:intergenic | 35.0% | |
| !! | TTGCTGTTTGTACTAATGTC+AGG | - | chr1_1:78066956-78066975 | Msa0046060:CDS | 35.0% |
| ! | TGCTGTTTGTACTAATGTCA+GGG | - | chr1_1:78066957-78066976 | Msa0046060:CDS | 35.0% |
| GCCCCTTCTAATGTATAAAT+TGG | - | chr1_1:78066979-78066998 | Msa0046060:CDS | 35.0% | |
| GTATGTGAAAACTGCATCTT+TGG | + | chr1_1:78067060-78067079 | None:intergenic | 35.0% | |
| TTTAACTGTTGAAAGACAGC+TGG | + | chr1_1:78067099-78067118 | None:intergenic | 35.0% | |
| ! | ATTGTCTGAAATAGGATGTG+AGG | - | chr1_1:78067281-78067300 | Msa0046060:intron | 35.0% |
| AAACTATAGAGATGTGGTGA+TGG | + | chr1_1:78067330-78067349 | None:intergenic | 35.0% | |
| ! | TTTTTAACCTGTCGGGATAT+TGG | - | chr1_1:78067347-78067366 | Msa0046060:intron | 35.0% |
| ! | TTTTAACCTGTCGGGATATT+GGG | - | chr1_1:78067348-78067367 | Msa0046060:intron | 35.0% |
| AATTAACAACAGTAGGGTAG+GGG | + | chr1_1:78067423-78067442 | None:intergenic | 35.0% | |
| CTAATTAACAACAGTAGGGT+AGG | + | chr1_1:78067425-78067444 | None:intergenic | 35.0% | |
| ACCCTACTGTTGTTAATTAG+TGG | - | chr1_1:78067425-78067444 | Msa0046060:intron | 35.0% | |
| GCCACTAATTAACAACAGTA+GGG | + | chr1_1:78067429-78067448 | None:intergenic | 35.0% | |
| AGCCACTAATTAACAACAGT+AGG | + | chr1_1:78067430-78067449 | None:intergenic | 35.0% | |
| TGGAGGATCAAGAAAAATAG+CGG | + | chr1_1:78067574-78067593 | None:intergenic | 35.0% | |
| GATTGTTTCATTGAGGAACT+AGG | + | chr1_1:78067649-78067668 | None:intergenic | 35.0% | |
| AGTCATGGAAAATCATTCCT+AGG | + | chr1_1:78067804-78067823 | None:intergenic | 35.0% | |
| ! | ACATAATTTGTCATCGTGCA+CGG | + | chr1_1:78067938-78067957 | None:intergenic | 35.0% |
| ATGAGCTTACATTTAATGGG+TGG | - | chr1_1:78068015-78068034 | Msa0046060:intron | 35.0% | |
| ! | TGAGCTTACATTTAATGGGT+GGG | - | chr1_1:78068016-78068035 | Msa0046060:intron | 35.0% |
| TATTGAAAAACCATCTCCCT+CGG | + | chr1_1:78068106-78068125 | None:intergenic | 35.0% | |
| !! | TTAGTTTTCAAGGTTTGCTC+AGG | - | chr1_1:78068134-78068153 | Msa0046060:intron | 35.0% |
| TTGTAAGACGTCACAATGTT+TGG | - | chr1_1:78068160-78068179 | Msa0046060:intron | 35.0% | |
| AGCAAGAAACTCACAGATTA+TGG | - | chr1_1:78068327-78068346 | Msa0046060:intron | 35.0% | |
| ! | TTGTGCTATTATAGGATCAC+AGG | + | chr1_1:78068367-78068386 | None:intergenic | 35.0% |
| TTGTCGGACAATATAGTACT+AGG | - | chr1_1:78068439-78068458 | Msa0046060:intron | 35.0% | |
| TCGTTACTAGTACTTACACA+TGG | + | chr1_1:78068537-78068556 | None:intergenic | 35.0% | |
| AACGAGAGTTGACTAGATAA+AGG | - | chr1_1:78068552-78068571 | Msa0046060:intron | 35.0% | |
| TAAATCTCTCGGTACTAGTT+TGG | + | chr1_1:78068609-78068628 | None:intergenic | 35.0% | |
| ATATCAAACCCTATACCACT+AGG | + | chr1_1:78068708-78068727 | None:intergenic | 35.0% | |
| AGTTACTGTCACAATTGGTT+CGG | - | chr1_1:78068973-78068992 | Msa0046060:CDS | 35.0% | |
| ! | TATCCACTTCTGTTTGGTTT+GGG | + | chr1_1:78069156-78069175 | None:intergenic | 35.0% |
| !!! | CTTACTGCTTTTTCTGATTC+AGG | + | chr1_1:78069279-78069298 | None:intergenic | 35.0% |
| CTGAATCAGAAAAAGCAGTA+AGG | - | chr1_1:78069277-78069296 | Msa0046060:intron | 35.0% | |
| TAGCTCAGGGATTAAATTAC+AGG | - | chr1_1:78069480-78069499 | Msa0046060:intron | 35.0% | |
| TTATCAAGATAAAGCCGTGA+AGG | - | chr1_1:78069613-78069632 | Msa0046060:intron | 35.0% | |
| ! | AGAGAGGTACATAACAGAAA+TGG | - | chr1_1:78069640-78069659 | Msa0046060:CDS | 35.0% |
| GATCATTCTTCAACTTCTCA+CGG | + | chr1_1:78069673-78069692 | None:intergenic | 35.0% | |
| !! | GAAGGAGAAAGATTTTAGTG+TGG | - | chr1_1:78069832-78069851 | Msa0046060:intron | 35.0% |
| AAGAAATGTTAGCTAGGGAA+TGG | - | chr1_1:78069918-78069937 | Msa0046060:CDS | 35.0% | |
| ! | CTGTGATTTGTGCTTAAAGT+AGG | + | chr1_1:78070015-78070034 | None:intergenic | 35.0% |
| ACAAATCACAGTGATCAACT+GGG | - | chr1_1:78070024-78070043 | Msa0046060:CDS | 35.0% | |
| !! | TCAGTTTGAGGTGTTTGTTT+TGG | - | chr1_1:78070064-78070083 | Msa0046060:five_prime_UTR | 35.0% |
| GCTGAATATATGATCCTAAC+AGG | - | chr1_1:78070106-78070125 | Msa0046060:five_prime_UTR | 35.0% | |
| CCCTATCTACAAATACTGGA+TGG | - | chr1_1:78065794-78065813 | Msa0046060:three_prime_UTR | 40.0% | |
| TGGCGCAGGAAAAATACTAA+AGG | - | chr1_1:78065928-78065947 | Msa0046060:three_prime_UTR | 40.0% | |
| CTCAAAGCTGTCTCTTTCAT+GGG | + | chr1_1:78066010-78066029 | None:intergenic | 40.0% | |
| TAGGTGAAGGATATTCACCA+TGG | + | chr1_1:78066033-78066052 | None:intergenic | 40.0% | |
| TGGTGAATATCCTTCACCTA+TGG | - | chr1_1:78066033-78066052 | Msa0046060:three_prime_UTR | 40.0% | |
| TCATATGTTGCCATAGGTGA+AGG | + | chr1_1:78066046-78066065 | None:intergenic | 40.0% | |
| TTCACCTATGGCAACATATG+AGG | - | chr1_1:78066045-78066064 | Msa0046060:three_prime_UTR | 40.0% | |
| CAAGCTAAGTATGAAGAGCT+TGG | + | chr1_1:78066086-78066105 | None:intergenic | 40.0% | |
| CAAGCTCTTCATACTTAGCT+TGG | - | chr1_1:78066084-78066103 | Msa0046060:three_prime_UTR | 40.0% | |
| TTGCAGGATTCCTGTTATTG+GGG | - | chr1_1:78066321-78066340 | Msa0046060:CDS | 40.0% | |
| GAGAAGTCACTTCAACAAAG+AGG | + | chr1_1:78066369-78066388 | None:intergenic | 40.0% | |
| TTTGTTGAAGTGACTTCTCG+TGG | - | chr1_1:78066370-78066389 | Msa0046060:CDS | 40.0% | |
| ATTCACACAATGTTTGGCGT+CGG | + | chr1_1:78066457-78066476 | None:intergenic | 40.0% | |
| GTCCAAAATATAGGACACTG+AGG | - | chr1_1:78066494-78066513 | Msa0046060:intron | 40.0% | |
| ! | CAAATGCTTCTTTTGTGCTG+CGG | - | chr1_1:78066834-78066853 | Msa0046060:intron | 40.0% |
| AACTGGACCAATACAACTTC+CGG | - | chr1_1:78066914-78066933 | Msa0046060:CDS | 40.0% | |
| GAACATACCGGAAGTTGTAT+TGG | + | chr1_1:78066924-78066943 | None:intergenic | 40.0% | |
| ACAACTTCCGGTATGTTCAT+TGG | - | chr1_1:78066926-78066945 | Msa0046060:CDS | 40.0% | |
| AAAGCAAAGCAAAGACCTTC+AGG | + | chr1_1:78067138-78067157 | None:intergenic | 40.0% | |
| TTTAACCTGTCGGGATATTG+GGG | - | chr1_1:78067349-78067368 | Msa0046060:intron | 40.0% | |
| ATTAACAACAGTAGGGTAGG+GGG | + | chr1_1:78067422-78067441 | None:intergenic | 40.0% | |
| GGAGGATCAAGAAAAATAGC+GGG | + | chr1_1:78067573-78067592 | None:intergenic | 40.0% | |
| ! | GAGCTTACATTTAATGGGTG+GGG | - | chr1_1:78068017-78068036 | Msa0046060:intron | 40.0% |
| CAATCCATTGCAAAATCCGA+GGG | - | chr1_1:78068087-78068106 | Msa0046060:intron | 40.0% | |
| !! | GAGGGAGATGGTTTTTCAAT+AGG | - | chr1_1:78068105-78068124 | Msa0046060:intron | 40.0% |
| AACTTCCTTCTAAGCAGCTT+AGG | - | chr1_1:78068274-78068293 | Msa0046060:intron | 40.0% | |
| TTACACCTAAGCTGCTTAGA+AGG | + | chr1_1:78068282-78068301 | None:intergenic | 40.0% | |
| ! | ACTTTTGTCACCCTGACTAT+TGG | + | chr1_1:78068583-78068602 | None:intergenic | 40.0% |
| !! | ATTGGTTCGGAGAAACTCAA+AGG | - | chr1_1:78068986-78069005 | Msa0046060:CDS | 40.0% |
| TGTTGTTAGCAGGAACACTA+TGG | + | chr1_1:78069057-78069076 | None:intergenic | 40.0% | |
| GTATCCACTTCTGTTTGGTT+TGG | + | chr1_1:78069157-78069176 | None:intergenic | 40.0% | |
| CAATGGTCCTACTAATCTCT+CGG | + | chr1_1:78069236-78069255 | None:intergenic | 40.0% | |
| AGGTAAGAGCAGGATAGTTT+AGG | + | chr1_1:78069365-78069384 | None:intergenic | 40.0% | |
| CTATCCTGCTCTTACCTATT+TGG | - | chr1_1:78069368-78069387 | Msa0046060:intron | 40.0% | |
| TAGACCAAATAGGTAAGAGC+AGG | + | chr1_1:78069375-78069394 | None:intergenic | 40.0% | |
| AATGCATATCTGAGCTTCTG+CGG | + | chr1_1:78069532-78069551 | None:intergenic | 40.0% | |
| ! | AACATGTCAGTATCTGGTTC+AGG | + | chr1_1:78069734-78069753 | None:intergenic | 40.0% |
| GCATTCAACATGTCAGTATC+TGG | + | chr1_1:78069740-78069759 | None:intergenic | 40.0% | |
| TACTGACATGTTGAATGCTG+AGG | - | chr1_1:78069742-78069761 | Msa0046060:intron | 40.0% | |
| CTATGAAGATGATAAGGCGA+AGG | - | chr1_1:78069814-78069833 | Msa0046060:intron | 40.0% | |
| TGTGGATTCATTGCCTGTTA+TGG | - | chr1_1:78069850-78069869 | Msa0046060:intron | 40.0% | |
| GTGGATTCATTGCCTGTTAT+GGG | - | chr1_1:78069851-78069870 | Msa0046060:intron | 40.0% | |
| TGTTAGCTAGGGAATGGAAT+AGG | - | chr1_1:78069924-78069943 | Msa0046060:CDS | 40.0% | |
| CACAAATCACAGTGATCAAC+TGG | - | chr1_1:78070023-78070042 | Msa0046060:CDS | 40.0% | |
| ATCTGTTTCAGCATCCTGTT+AGG | + | chr1_1:78070123-78070142 | None:intergenic | 40.0% | |
| GCGCCACCATTAACAAGAAA+AGG | + | chr1_1:78065914-78065933 | None:intergenic | 45.0% | |
| ! | TTTCTTGTTAATGGTGGCGC+AGG | - | chr1_1:78065914-78065933 | Msa0046060:three_prime_UTR | 45.0% |
| GCTGTCTCTTTCATGGGTAA+TGG | + | chr1_1:78066004-78066023 | None:intergenic | 45.0% | |
| GCTCAAAGCTGTCTCTTTCA+TGG | + | chr1_1:78066011-78066030 | None:intergenic | 45.0% | |
| !! | AAAGAGACAGCTTTGAGCCA+TGG | - | chr1_1:78066013-78066032 | Msa0046060:three_prime_UTR | 45.0% |
| ACCTATGGCAACATATGAGG+AGG | - | chr1_1:78066048-78066067 | Msa0046060:three_prime_UTR | 45.0% | |
| ACCTCCTCATATGTTGCCAT+AGG | + | chr1_1:78066052-78066071 | None:intergenic | 45.0% | |
| TGCAGGATTCCTGTTATTGG+GGG | - | chr1_1:78066322-78066341 | Msa0046060:CDS | 45.0% | |
| GATTCCTGTTATTGGGGGAA+GGG | - | chr1_1:78066327-78066346 | Msa0046060:CDS | 45.0% | |
| AATTCCCTTCCCCCAATAAC+AGG | + | chr1_1:78066334-78066353 | None:intergenic | 45.0% | |
| TGTTATTGGGGGAAGGGAAT+TGG | - | chr1_1:78066333-78066352 | Msa0046060:CDS | 45.0% | |
| TTGAAGTGACTTCTCGTGGA+GGG | - | chr1_1:78066374-78066393 | Msa0046060:CDS | 45.0% | |
| ! | CGCCTCAGTGTCCTATATTT+TGG | + | chr1_1:78066499-78066518 | None:intergenic | 45.0% |
| ! | GAAGCATTTGTAGCCGTTGA+TGG | + | chr1_1:78066824-78066843 | None:intergenic | 45.0% |
| !! | GAAAACTGCATCTTTGGAGC+AGG | + | chr1_1:78067054-78067073 | None:intergenic | 45.0% |
| AAGACAGCTGGTTGAACTTG+TGG | + | chr1_1:78067087-78067106 | None:intergenic | 45.0% | |
| GGGGTGTAGTTGCAATTGTT+TGG | - | chr1_1:78067258-78067277 | Msa0046060:intron | 45.0% | |
| TTAACCTGTCGGGATATTGG+GGG | - | chr1_1:78067350-78067369 | Msa0046060:intron | 45.0% | |
| GCAATCCATTGCAAAATCCG+AGG | - | chr1_1:78068086-78068105 | Msa0046060:intron | 45.0% | |
| ! | ATCTCCCTCGGATTTTGCAA+TGG | + | chr1_1:78068094-78068113 | None:intergenic | 45.0% |
| ATTGCAAAATCCGAGGGAGA+TGG | - | chr1_1:78068093-78068112 | Msa0046060:intron | 45.0% | |
| TCAACACCACCTAGTGGTAT+AGG | - | chr1_1:78068696-78068715 | Msa0046060:intron | 45.0% | |
| CAACACCACCTAGTGGTATA+GGG | - | chr1_1:78068697-78068716 | Msa0046060:intron | 45.0% | |
| TCAAACCCTATACCACTAGG+TGG | + | chr1_1:78068705-78068724 | None:intergenic | 45.0% | |
| TTCTCTTGTGCTCTCAGCAA+TGG | - | chr1_1:78068886-78068905 | Msa0046060:CDS | 45.0% | |
| TCTCTTGTGCTCTCAGCAAT+GGG | - | chr1_1:78068887-78068906 | Msa0046060:CDS | 45.0% | |
| CTCAGCAATGGGATCATCTT+CGG | - | chr1_1:78068898-78068917 | Msa0046060:CDS | 45.0% | |
| GTTAGCAGGAACACTATGGT+GGG | + | chr1_1:78069053-78069072 | None:intergenic | 45.0% | |
| TGTTAGCAGGAACACTATGG+TGG | + | chr1_1:78069054-78069073 | None:intergenic | 45.0% | |
| TCTCTGATTTCTTCCTGCGT+CGG | + | chr1_1:78069111-78069130 | None:intergenic | 45.0% | |
| TCACCCAAACCAAACAGAAG+TGG | - | chr1_1:78069150-78069169 | Msa0046060:CDS | 45.0% | |
| TCTTTGCAGAACAGCATCCA+AGG | - | chr1_1:78069184-78069203 | Msa0046060:CDS | 45.0% | |
| CGAGAGATTAGTAGGACCAT+TGG | - | chr1_1:78069234-78069253 | Msa0046060:CDS | 45.0% | |
| CTTGTTCCAGAGTTCACCAA+TGG | + | chr1_1:78069253-78069272 | None:intergenic | 45.0% | |
| GAGCAGGATAGTTTAGGAAC+TGG | + | chr1_1:78069359-78069378 | None:intergenic | 45.0% | |
| GTACCTCTCTTTGTCCTTCA+CGG | + | chr1_1:78069630-78069649 | None:intergenic | 45.0% | |
| TCAGGAAATCGCTGTTGAAG+TGG | + | chr1_1:78069716-78069735 | None:intergenic | 45.0% | |
| TCATTGCCTGTTATGGGAGT+TGG | - | chr1_1:78069857-78069876 | Msa0046060:intron | 45.0% | |
| ! | CACAGTGATCAACTGGGTTT+TGG | - | chr1_1:78070030-78070049 | Msa0046060:CDS | 45.0% |
| TTCCGCGTCTGATCTCTAAA+TGG | - | chr1_1:78070143-78070162 | Msa0046060:five_prime_UTR | 45.0% | |
| GACCATTTAGAGATCAGACG+CGG | + | chr1_1:78070148-78070167 | None:intergenic | 45.0% | |
| !! | TAAATGAAAAATTATAATAA+TGG | - | chr1_1:78068230-78068249 | Msa0046060:intron | 5.0% |
| GAGAAGCTCCACACTCTCAT+GGG | - | chr1_1:78066106-78066125 | Msa0046060:three_prime_UTR | 50.0% | |
| CATGGGCACCAAGTTCATGT+AGG | - | chr1_1:78066123-78066142 | Msa0046060:exon | 50.0% | |
| GGATTCCTGTTATTGGGGGA+AGG | - | chr1_1:78066326-78066345 | Msa0046060:CDS | 50.0% | |
| GTTGAAGTGACTTCTCGTGG+AGG | - | chr1_1:78066373-78066392 | Msa0046060:CDS | 50.0% | |
| GTTAATTCTGCTCCGCCTGA+AGG | - | chr1_1:78067120-78067139 | Msa0046060:intron | 50.0% | |
| GCAAAGCAAAGACCTTCAGG+CGG | + | chr1_1:78067135-78067154 | None:intergenic | 50.0% | |
| TTGCAGTCAACACCACCTAG+TGG | - | chr1_1:78068690-78068709 | Msa0046060:intron | 50.0% | |
| ATCATCTTCGGCAGGATCTC+AGG | - | chr1_1:78068910-78068929 | Msa0046060:CDS | 50.0% | |
| AGGTTGTCGGGGTCATTGAT+GGG | - | chr1_1:78068930-78068949 | Msa0046060:CDS | 50.0% | |
| !! | TCTGTTTGGTTTGGGTGAGC+AGG | + | chr1_1:78069148-78069167 | None:intergenic | 50.0% |
| !! | CGGTGAAGAGGTTTTAGCCT+TGG | + | chr1_1:78069204-78069223 | None:intergenic | 50.0% |
| AGGCTAAAACCTCTTCACCG+AGG | - | chr1_1:78069204-78069223 | Msa0046060:CDS | 50.0% | |
| GGCTAAAACCTCTTCACCGA+GGG | - | chr1_1:78069205-78069224 | Msa0046060:CDS | 50.0% | |
| AAAACCTCTTCACCGAGGGA+AGG | - | chr1_1:78069209-78069228 | Msa0046060:CDS | 50.0% | |
| TAATCTCTCGGTCCTTCCCT+CGG | + | chr1_1:78069224-78069243 | None:intergenic | 50.0% | |
| GGAAGGACCGAGAGATTAGT+AGG | - | chr1_1:78069226-78069245 | Msa0046060:CDS | 50.0% | |
| GTAGGACCATTGGTGAACTC+TGG | - | chr1_1:78069244-78069263 | Msa0046060:intron | 50.0% | |
| AAGCCGTGAAGGACAAAGAG+AGG | - | chr1_1:78069624-78069643 | Msa0046060:CDS | 50.0% | |
| GGCAGACTCTCTTCAAACTC+CGG | - | chr1_1:78069763-78069782 | Msa0046060:intron | 50.0% | |
| TCAGCACCAACTCCCATAAC+AGG | + | chr1_1:78069866-78069885 | None:intergenic | 50.0% | |
| !! | GCTGAGACTTTGAGTTGCAG+TGG | - | chr1_1:78069986-78070005 | Msa0046060:CDS | 50.0% |
| GGAGAAGCTCCACACTCTCA+TGG | - | chr1_1:78066105-78066124 | Msa0046060:three_prime_UTR | 55.0% | |
| !! | ACTTGGTGCCCATGAGAGTG+TGG | + | chr1_1:78066117-78066136 | None:intergenic | 55.0% |
| CCAGGGAGCCTACATGAACT+TGG | + | chr1_1:78066134-78066153 | None:intergenic | 55.0% | |
| CCAAGTTCATGTAGGCTCCC+TGG | - | chr1_1:78066131-78066150 | Msa0046060:exon | 55.0% | |
| !! | GCATCTTTGGAGCAGGAGCT+GGG | + | chr1_1:78067047-78067066 | None:intergenic | 55.0% |
| !! | TGCATCTTTGGAGCAGGAGC+TGG | + | chr1_1:78067048-78067067 | None:intergenic | 55.0% |
| TTCACCCCCAATATCCCGAC+AGG | + | chr1_1:78067357-78067376 | None:intergenic | 55.0% | |
| GCAATGGGATCATCTTCGGC+AGG | - | chr1_1:78068902-78068921 | Msa0046060:CDS | 55.0% | |
| ! | TCGGCAGGATCTCAGGTTGT+CGG | - | chr1_1:78068917-78068936 | Msa0046060:CDS | 55.0% |
| CAGGTTGTCGGGGTCATTGA+TGG | - | chr1_1:78068929-78068948 | Msa0046060:CDS | 55.0% | |
| ! | GCTGGCAGCACAGGATTTTG+TGG | + | chr1_1:78069028-78069047 | None:intergenic | 55.0% |
| ! | GGAACACTATGGTGGGATGC+TGG | + | chr1_1:78069046-78069065 | None:intergenic | 55.0% |
| ! | GCGGTCACGTTGTTGTTAGC+AGG | + | chr1_1:78069067-78069086 | None:intergenic | 55.0% |
| AACAACGTGACCGCCTCTGT+CGG | - | chr1_1:78069073-78069092 | Msa0046060:intron | 55.0% | |
| CGGTGTGTAGACACACAGTC+AGG | + | chr1_1:78069512-78069531 | None:intergenic | 55.0% | |
| CCGTCTGAACTACTCTGCTC+CGG | + | chr1_1:78069785-78069804 | None:intergenic | 55.0% | |
| CCGGAGCAGAGTAGTTCAGA+CGG | - | chr1_1:78069782-78069801 | Msa0046060:intron | 55.0% | |
| !! | CTTTGGAGCAGGAGCTGGGA+TGG | + | chr1_1:78067043-78067062 | None:intergenic | 60.0% |
| ! | CGGCAGGATCTCAGGTTGTC+GGG | - | chr1_1:78068918-78068937 | Msa0046060:CDS | 60.0% |
| ! | GGCAGGATCTCAGGTTGTCG+GGG | - | chr1_1:78068919-78068938 | Msa0046060:CDS | 60.0% |
| ACGATGGACACCGACAGAGG+CGG | + | chr1_1:78069086-78069105 | None:intergenic | 60.0% | |
| TGGTGGGATGCTGGCAGCAC+AGG | + | chr1_1:78069037-78069056 | None:intergenic | 65.0% | |
| GCGACGATGGACACCGACAG+AGG | + | chr1_1:78069089-78069108 | None:intergenic | 65.0% | |
| ! | TCTTCCTGCGTCGGCGACGA+TGG | + | chr1_1:78069102-78069121 | None:intergenic | 65.0% |
| CGGTCCTTCCCTCGGTGAAG+AGG | + | chr1_1:78069216-78069235 | None:intergenic | 65.0% | |
| GTGTCCATCGTCGCCGACGC+AGG | - | chr1_1:78069095-78069114 | Msa0046060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78065782 | 78070245 | 78065782 | ID=Msa0046060;Name=Msa0046060 |
| chr1_1 | mRNA | 78065782 | 78070245 | 78065782 | ID=Msa0046060-mRNA-1;Parent=Msa0046060;Name=Msa0046060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=189|0.6|0.83|1|0.6|0.83|6|353|353 |
| chr1_1 | exon | 78065782 | 78066416 | 78065782 | ID=Msa0046060-mRNA-1:exon:26802;Parent=Msa0046060-mRNA-1 |
| chr1_1 | exon | 78066859 | 78067103 | 78066859 | ID=Msa0046060-mRNA-1:exon:26801;Parent=Msa0046060-mRNA-1 |
| chr1_1 | exon | 78068886 | 78069008 | 78068886 | ID=Msa0046060-mRNA-1:exon:26800;Parent=Msa0046060-mRNA-1 |
| chr1_1 | exon | 78069092 | 78069254 | 78069092 | ID=Msa0046060-mRNA-1:exon:26799;Parent=Msa0046060-mRNA-1 |
| chr1_1 | exon | 78069622 | 78069700 | 78069622 | ID=Msa0046060-mRNA-1:exon:26798;Parent=Msa0046060-mRNA-1 |
| chr1_1 | exon | 78069887 | 78070245 | 78069887 | ID=Msa0046060-mRNA-1:exon:26797;Parent=Msa0046060-mRNA-1 |
| chr1_1 | five_prime_UTR | 78070057 | 78070245 | 78070057 | ID=Msa0046060-mRNA-1:five_prime_utr;Parent=Msa0046060-mRNA-1 |
| chr1_1 | CDS | 78069887 | 78070056 | 78069887 | ID=Msa0046060-mRNA-1:cds;Parent=Msa0046060-mRNA-1 |
| chr1_1 | CDS | 78069622 | 78069700 | 78069622 | ID=Msa0046060-mRNA-1:cds;Parent=Msa0046060-mRNA-1 |
| chr1_1 | CDS | 78069092 | 78069254 | 78069092 | ID=Msa0046060-mRNA-1:cds;Parent=Msa0046060-mRNA-1 |
| chr1_1 | CDS | 78068886 | 78069008 | 78068886 | ID=Msa0046060-mRNA-1:cds;Parent=Msa0046060-mRNA-1 |
| chr1_1 | CDS | 78066859 | 78067103 | 78066859 | ID=Msa0046060-mRNA-1:cds;Parent=Msa0046060-mRNA-1 |
| chr1_1 | CDS | 78066135 | 78066416 | 78066135 | ID=Msa0046060-mRNA-1:cds;Parent=Msa0046060-mRNA-1 |
| chr1_1 | three_prime_UTR | 78065782 | 78066134 | 78065782 | ID=Msa0046060-mRNA-1:three_prime_utr;Parent=Msa0046060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
