Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437780 | XP_003592799.2 | 97.015 | 402 | 11 | 1 | 1 | 401 | 1 | 402 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437780 | sp|Q9MAT6|HMG15_ARATH | 60.000 | 380 | 114 | 11 | 1 | 362 | 1 | 360 | 1.31e-133 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437780 | G7IF34 | 97.015 | 402 | 11 | 1 | 1 | 401 | 1 | 402 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0437780 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0437780 | 0.817807 | 2.722742e-52 | -8.615850e-47 |
| Msa0001540 | Msa0437780 | 0.809396 | 1.931554e-50 | -8.615850e-47 |
| Msa0009800 | Msa0437780 | 0.842143 | 3.094770e-58 | -8.615850e-47 |
| Msa0009890 | Msa0437780 | 0.833731 | 4.505864e-56 | -8.615850e-47 |
| Msa0028950 | Msa0437780 | 0.810158 | 1.324465e-50 | -8.615850e-47 |
| Msa0030400 | Msa0437780 | 0.816626 | 5.020074e-52 | -8.615850e-47 |
| Msa0034320 | Msa0437780 | 0.810673 | 1.025277e-50 | -8.615850e-47 |
| Msa0037820 | Msa0437780 | 0.808853 | 2.525609e-50 | -8.615850e-47 |
| Msa0040410 | Msa0437780 | 0.811524 | 6.706188e-51 | -8.615850e-47 |
| Msa0044380 | Msa0437780 | 0.808278 | 3.350370e-50 | -8.615850e-47 |
| Msa0046060 | Msa0437780 | 0.898576 | 4.634641e-77 | -8.615850e-47 |
| Msa0046360 | Msa0437780 | 0.805338 | 1.400655e-49 | -8.615850e-47 |
| Msa0047470 | Msa0437780 | 0.800777 | 1.229382e-48 | -8.615850e-47 |
| Msa0065690 | Msa0437780 | 0.803301 | 3.722222e-49 | -8.615850e-47 |
| Msa0084630 | Msa0437780 | 0.804548 | 2.049211e-49 | -8.615850e-47 |
| Msa0092660 | Msa0437780 | 0.811788 | 5.875658e-51 | -8.615850e-47 |
| Msa0092730 | Msa0437780 | 0.813365 | 2.656085e-51 | -8.615850e-47 |
| Msa0094670 | Msa0437780 | 0.822014 | 2.970426e-53 | -8.615850e-47 |
| Msa0105210 | Msa0437780 | 0.800984 | 1.114927e-48 | -8.615850e-47 |
| Msa0107460 | Msa0437780 | 0.809566 | 1.775765e-50 | -8.615850e-47 |
| Msa0112290 | Msa0437780 | 0.824131 | 9.532036e-54 | -8.615850e-47 |
| Msa0115950 | Msa0437780 | 0.805182 | 1.510216e-49 | -8.615850e-47 |
| Msa0130760 | Msa0437780 | 0.827465 | 1.540902e-54 | -8.615850e-47 |
| Msa0130800 | Msa0437780 | 0.821081 | 4.879442e-53 | -8.615850e-47 |
| Msa0137600 | Msa0437780 | 0.812973 | 3.237424e-51 | -8.615850e-47 |
| Msa0142000 | Msa0437780 | 0.818201 | 2.217761e-52 | -8.615850e-47 |
| Msa0143490 | Msa0437780 | 0.808609 | 2.847206e-50 | -8.615850e-47 |
| Msa0143980 | Msa0437780 | 0.810137 | 1.338613e-50 | -8.615850e-47 |
| Msa0171920 | Msa0437780 | 0.811520 | 6.721206e-51 | -8.615850e-47 |
| Msa0173610 | Msa0437780 | 0.817350 | 3.451917e-52 | -8.615850e-47 |
| Msa0173760 | Msa0437780 | 0.846458 | 2.144386e-59 | -8.615850e-47 |
| Msa0173850 | Msa0437780 | 0.821304 | 4.334428e-53 | -8.615850e-47 |
| Msa0175280 | Msa0437780 | 0.829970 | 3.821031e-55 | -8.615850e-47 |
| Msa0176710 | Msa0437780 | 0.815228 | 1.029600e-51 | -8.615850e-47 |
| Msa0181010 | Msa0437780 | 0.838661 | 2.519009e-57 | -8.615850e-47 |
| Msa0181020 | Msa0437780 | 0.870149 | 1.814521e-66 | -8.615850e-47 |
| Msa0183490 | Msa0437780 | 0.811433 | 7.018984e-51 | -8.615850e-47 |
| Msa0192020 | Msa0437780 | 0.805853 | 1.092483e-49 | -8.615850e-47 |
| Msa0192710 | Msa0437780 | 0.816708 | 4.811757e-52 | -8.615850e-47 |
| Msa0193000 | Msa0437780 | 0.801136 | 1.038363e-48 | -8.615850e-47 |
| Msa0199740 | Msa0437780 | 0.801358 | 9.350635e-49 | -8.615850e-47 |
| Msa0206940 | Msa0437780 | 0.861892 | 7.454798e-64 | -8.615850e-47 |
| Msa0218860 | Msa0437780 | 0.802139 | 6.463886e-49 | -8.615850e-47 |
| Msa0235180 | Msa0437780 | 0.824621 | 7.310832e-54 | -8.615850e-47 |
| Msa0367370 | Msa0437780 | 0.816860 | 4.448047e-52 | -8.615850e-47 |
| Msa0369780 | Msa0437780 | 0.828928 | 6.845400e-55 | -8.615850e-47 |
| Msa0371870 | Msa0437780 | 0.834767 | 2.477857e-56 | -8.615850e-47 |
| Msa0379390 | Msa0437780 | 0.815873 | 7.397161e-52 | -8.615850e-47 |
| Msa0380360 | Msa0437780 | 0.818530 | 1.868352e-52 | -8.615850e-47 |
| Msa0380520 | Msa0437780 | 0.801993 | 6.925825e-49 | -8.615850e-47 |
| Msa0382500 | Msa0437780 | 0.826496 | 2.627857e-54 | -8.615850e-47 |
| Msa0387790 | Msa0437780 | 0.830175 | 3.404994e-55 | -8.615850e-47 |
| Msa0415930 | Msa0437780 | 0.806809 | 6.867290e-50 | -8.615850e-47 |
| Msa0417150 | Msa0437780 | 0.815505 | 8.934074e-52 | -8.615850e-47 |
| Msa0420800 | Msa0437780 | 0.821312 | 4.316667e-53 | -8.615850e-47 |
| Msa0426480 | Msa0437780 | 0.852989 | 3.214351e-61 | -8.615850e-47 |
| Msa0432680 | Msa0437780 | 0.832058 | 1.174009e-55 | -8.615850e-47 |
| Msa0437780 | Msa0438460 | 0.806541 | 7.823997e-50 | -8.615850e-47 |
| Msa0437780 | Msa0455200 | 0.810545 | 1.092962e-50 | -8.615850e-47 |
| Msa0437780 | Msa0463990 | 0.819346 | 1.218844e-52 | -8.615850e-47 |
| Msa0437780 | Msa0466070 | 0.804299 | 2.308963e-49 | -8.615850e-47 |
| Msa0437780 | Msa0466340 | 0.829262 | 5.680403e-55 | -8.615850e-47 |
| Msa0437780 | Msa0467080 | 0.812911 | 3.340227e-51 | -8.615850e-47 |
| Msa0437780 | Msa0473010 | 0.816325 | 5.862788e-52 | -8.615850e-47 |
| Msa0437780 | Msa0476180 | 0.802094 | 6.603702e-49 | -8.615850e-47 |
| Msa0437780 | Msa0480150 | 0.831953 | 1.246201e-55 | -8.615850e-47 |
| Msa0437780 | Msa0509540 | 0.824770 | 6.739820e-54 | -8.615850e-47 |
| Msa0437780 | Msa0512130 | 0.843085 | 1.739993e-58 | -8.615850e-47 |
| Msa0437780 | Msa0512310 | 0.831264 | 1.841791e-55 | -8.615850e-47 |
| Msa0437780 | Msa0517190 | 0.814467 | 1.518129e-51 | -8.615850e-47 |
| Msa0437780 | Msa0524510 | 0.801827 | 7.492971e-49 | -8.615850e-47 |
| Msa0437780 | Msa0528740 | 0.849145 | 3.902373e-60 | -8.615850e-47 |
| Msa0437780 | Msa0528870 | 0.810890 | 9.203650e-51 | -8.615850e-47 |
| Msa0437780 | Msa0530930 | 0.819667 | 1.029692e-52 | -8.615850e-47 |
| Msa0437780 | Msa0559890 | 0.834529 | 2.843947e-56 | -8.615850e-47 |
| Msa0437780 | Msa0569930 | 0.804064 | 2.584685e-49 | -8.615850e-47 |
| Msa0437780 | Msa0577230 | 0.802411 | 5.681453e-49 | -8.615850e-47 |
| Msa0437780 | Msa0579610 | 0.846598 | 1.964021e-59 | -8.615850e-47 |
| Msa0437780 | Msa0581190 | 0.803559 | 3.290773e-49 | -8.615850e-47 |
| Msa0437780 | Msa0583930 | 0.803530 | 3.336605e-49 | -8.615850e-47 |
| Msa0437780 | Msa0587900 | 0.842632 | 2.296950e-58 | -8.615850e-47 |
| Msa0437780 | Msa0589290 | 0.847451 | 1.147234e-59 | -8.615850e-47 |
| Msa0437780 | Msa0604700 | 0.819671 | 1.027460e-52 | -8.615850e-47 |
| Msa0437780 | Msa0607300 | 0.823734 | 1.180899e-53 | -8.615850e-47 |
| Msa0437780 | Msa0609990 | 0.811071 | 8.411420e-51 | -8.615850e-47 |
| Msa0437780 | Msa0625330 | 0.804153 | 2.476305e-49 | -8.615850e-47 |
| Msa0437780 | Msa0628060 | 0.800802 | 1.214754e-48 | -8.615850e-47 |
| Msa0437780 | Msa0629500 | 0.851000 | 1.179746e-60 | -8.615850e-47 |
| Msa0437780 | Msa0635130 | 0.800576 | 1.350655e-48 | -8.615850e-47 |
| Msa0437780 | Msa0637850 | 0.803730 | 3.032204e-49 | -8.615850e-47 |
| Msa0437780 | Msa0638500 | 0.818477 | 1.920659e-52 | -8.615850e-47 |
| Msa0437780 | Msa0645780 | 0.806089 | 9.743313e-50 | -8.615850e-47 |
| Msa0437780 | Msa0645820 | 0.806067 | 9.849718e-50 | -8.615850e-47 |
| Msa0437780 | Msa0648630 | 0.809010 | 2.337636e-50 | -8.615850e-47 |
| Msa0437780 | Msa0650360 | 0.858456 | 8.137317e-63 | -8.615850e-47 |
| Msa0437780 | Msa0667970 | 0.818964 | 1.488992e-52 | -8.615850e-47 |
| Msa0437780 | Msa0677840 | 0.850746 | 1.391585e-60 | -8.615850e-47 |
| Msa0437780 | Msa0690350 | 0.812197 | 4.785621e-51 | -8.615850e-47 |
| Msa0437780 | Msa0691100 | 0.809560 | 1.781387e-50 | -8.615850e-47 |
| Msa0437780 | Msa0697180 | 0.816273 | 6.020785e-52 | -8.615850e-47 |
| Msa0437780 | Msa0709480 | 0.809350 | 1.976535e-50 | -8.615850e-47 |
| Msa0437780 | Msa0720380 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
| Msa0437780 | Msa0760950 | 0.801249 | 9.842541e-49 | -8.615850e-47 |
| Msa0437780 | Msa0769830 | 0.803138 | 4.022213e-49 | -8.615850e-47 |
| Msa0437780 | Msa0780140 | 0.822351 | 2.481185e-53 | -8.615850e-47 |
| Msa0437780 | Msa0789800 | 0.808345 | 3.242360e-50 | -8.615850e-47 |
| Msa0437780 | Msa0790180 | 0.811663 | 6.255939e-51 | -8.615850e-47 |
| Msa0437780 | Msa0790830 | 0.802739 | 4.863319e-49 | -8.615850e-47 |
| Msa0437780 | Msa0793090 | 0.993147 | 9.129002e-198 | -8.615850e-47 |
| Msa0437780 | Msa0794460 | 0.815113 | 1.091757e-51 | -8.615850e-47 |
| Msa0437780 | Msa0795850 | 0.801516 | 8.679071e-49 | -8.615850e-47 |
| Msa0437780 | Msa0824140 | 0.823083 | 1.676771e-53 | -8.615850e-47 |
| Msa0437780 | Msa0829570 | 0.823867 | 1.099183e-53 | -8.615850e-47 |
| Msa0437780 | Msa0830720 | 0.802528 | 5.375241e-49 | -8.615850e-47 |
| Msa0437780 | Msa0833630 | 0.815963 | 7.061064e-52 | -8.615850e-47 |
| Msa0437780 | Msa0848760 | 0.806625 | 7.512367e-50 | -8.615850e-47 |
| Msa0437780 | Msa0853920 | 0.820185 | 7.839808e-53 | -8.615850e-47 |
| Msa0437780 | Msa0863250 | 0.832251 | 1.051466e-55 | -8.615850e-47 |
| Msa0437780 | Msa0882700 | 0.809482 | 1.851509e-50 | -8.615850e-47 |
| Msa0437780 | Msa0901140 | 0.820929 | 5.289392e-53 | -8.615850e-47 |
| Msa0437780 | Msa0929940 | 0.828700 | 7.771421e-55 | -8.615850e-47 |
| Msa0437780 | Msa0931730 | 0.815393 | 9.457749e-52 | -8.615850e-47 |
| Msa0437780 | Msa0934830 | 0.812248 | 4.665174e-51 | -8.615850e-47 |
| Msa0437780 | Msa0937940 | 0.800731 | 1.256087e-48 | -8.615850e-47 |
| Msa0437780 | Msa0966410 | 0.820240 | 7.613680e-53 | -8.615850e-47 |
| Msa0437780 | Msa0968780 | 0.829053 | 6.384184e-55 | -8.615850e-47 |
| Msa0437780 | Msa0970050 | 0.810893 | 9.192435e-51 | -8.615850e-47 |
| Msa0437780 | Msa0975080 | 0.822230 | 2.647520e-53 | -8.615850e-47 |
| Msa0437780 | Msa1002980 | 0.817045 | 4.042058e-52 | -8.615850e-47 |
| Msa0437780 | Msa1029320 | 0.809225 | 2.101612e-50 | -8.615850e-47 |
| Msa0437780 | Msa1029430 | 0.815290 | 9.970079e-52 | -8.615850e-47 |
| Msa0437780 | Msa1040070 | 0.805842 | 1.098042e-49 | -8.615850e-47 |
| Msa0437780 | Msa1069960 | 0.824382 | 8.318548e-54 | -8.615850e-47 |
| Msa0437780 | Msa1079480 | 0.801220 | 9.978993e-49 | -8.615850e-47 |
| Msa0437780 | Msa1080620 | 0.851720 | 7.383729e-61 | -8.615850e-47 |
| Msa0437780 | Msa1080690 | 0.852845 | 3.532396e-61 | -8.615850e-47 |
| Msa0437780 | Msa1080840 | 0.816744 | 4.722475e-52 | -8.615850e-47 |
| Msa0437780 | Msa1081700 | 0.817664 | 2.932037e-52 | -8.615850e-47 |
| Msa0437780 | Msa1081850 | 0.819948 | 8.880651e-53 | -8.615850e-47 |
| Msa0437780 | Msa1083460 | 0.833630 | 4.777186e-56 | -8.615850e-47 |
| Msa0437780 | Msa1084490 | 0.815723 | 7.989541e-52 | -8.615850e-47 |
| Msa0437780 | Msa1118980 | 0.822146 | 2.769185e-53 | -8.615850e-47 |
| Msa0437780 | Msa1119860 | 0.835054 | 2.098133e-56 | -8.615850e-47 |
| Msa0437780 | Msa1125780 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa0437780 | Msa1125950 | 0.806085 | 9.761168e-50 | -8.615850e-47 |
| Msa0437780 | Msa1126310 | 0.801978 | 6.977267e-49 | -8.615850e-47 |
| Msa0437780 | Msa1126910 | 0.824050 | 9.957717e-54 | -8.615850e-47 |
| Msa0437780 | Msa1130650 | 0.810046 | 1.400209e-50 | -8.615850e-47 |
| Msa0437780 | Msa1130730 | 0.812750 | 3.622685e-51 | -8.615850e-47 |
| Msa0437780 | Msa1131900 | 0.825026 | 5.865218e-54 | -8.615850e-47 |
| Msa0437780 | Msa1132820 | 0.832441 | 9.438951e-56 | -8.615850e-47 |
| Msa0437780 | Msa1144950 | 0.844605 | 6.816118e-59 | -8.615850e-47 |
| Msa0437780 | Msa1145370 | 0.825099 | 5.637247e-54 | -8.615850e-47 |
| Msa0437780 | Msa1165290 | 0.806371 | 8.497417e-50 | -8.615850e-47 |
| Msa0437780 | Msa1166020 | 0.800277 | 1.554515e-48 | -8.615850e-47 |
| Msa0437780 | Msa1167160 | 0.821553 | 3.797463e-53 | -8.615850e-47 |
| Msa0437780 | Msa1171340 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
| Msa0437780 | Msa1222580 | 0.827507 | 1.505698e-54 | -8.615850e-47 |
| Msa0437780 | Msa1228880 | 0.807395 | 5.161796e-50 | -8.615850e-47 |
| Msa0437780 | Msa1233770 | 0.808855 | 2.522694e-50 | -8.615850e-47 |
| Msa0437780 | Msa1235040 | 0.828051 | 1.114713e-54 | -8.615850e-47 |
| Msa0437780 | Msa1238700 | 0.834131 | 3.579141e-56 | -8.615850e-47 |
| Msa0437780 | Msa1264560 | 0.816293 | 5.958633e-52 | -8.615850e-47 |
| Msa0437780 | Msa1276080 | 0.805748 | 1.149129e-49 | -8.615850e-47 |
| Msa0437780 | Msa1305520 | 0.826063 | 3.332233e-54 | -8.615850e-47 |
| Msa0437780 | Msa1305650 | 0.827876 | 1.227704e-54 | -8.615850e-47 |
| Msa0437780 | Msa1309100 | 0.807285 | 5.446038e-50 | -8.615850e-47 |
| Msa0437780 | Msa1309360 | 0.805318 | 1.414298e-49 | -8.615850e-47 |
| Msa0437780 | Msa1326000 | 0.822130 | 2.793088e-53 | -8.615850e-47 |
| Msa0437780 | Msa1366400 | 0.808753 | 2.653012e-50 | -8.615850e-47 |
| Msa0437780 | Msa1373380 | 0.998049 | 6.017943e-255 | -8.615850e-47 |
| Msa0437780 | Msa1374850 | 0.809056 | 2.284543e-50 | -8.615850e-47 |
| Msa0437780 | Msa1393720 | 0.817199 | 3.733054e-52 | -8.615850e-47 |
| Msa0437780 | Msa1394900 | 0.828403 | 9.167807e-55 | -8.615850e-47 |
| Msa0437780 | Msa1406880 | 0.820519 | 6.573280e-53 | -8.615850e-47 |
| Msa0437780 | Msa1412520 | 0.842525 | 2.452118e-58 | -8.615850e-47 |
| Msa0437780 | Msa1416460 | 0.814454 | 1.527897e-51 | -8.615850e-47 |
| Msa0437780 | Msa1418600 | 0.806200 | 9.233680e-50 | -8.615850e-47 |
| Msa0437780 | Msa1420520 | 0.824087 | 9.760543e-54 | -8.615850e-47 |
| Msa0437780 | Msa1422490 | 0.835404 | 1.711491e-56 | -8.615850e-47 |
| Msa0437780 | Msa1422500 | 0.860915 | 1.479943e-63 | -8.615850e-47 |
| Msa0437780 | Msa1423190 | 0.828590 | 8.261665e-55 | -8.615850e-47 |
| Msa0437780 | Msa1430760 | 0.817262 | 3.613265e-52 | -8.615850e-47 |
| Msa0437780 | Msa1437320 | 0.835681 | 1.456377e-56 | -8.615850e-47 |
| Msa0437780 | Msa1440180 | 0.810258 | 1.260632e-50 | -8.615850e-47 |
| Msa0437780 | Msa1449680 | 0.807243 | 5.560361e-50 | -8.615850e-47 |
| Msa0437780 | Msa1449740 | 0.811297 | 7.512832e-51 | -8.615850e-47 |
| Msa0437780 | Msa1458330 | 0.833463 | 5.256149e-56 | -8.615850e-47 |
| Msa0437780 | Msa1464800 | 0.839887 | 1.210920e-57 | -8.615850e-47 |
| Msa0242290 | Msa0437780 | 0.810973 | 8.829973e-51 | -8.615850e-47 |
| Msa0250520 | Msa0437780 | 0.838559 | 2.676145e-57 | -8.615850e-47 |
| Msa0258380 | Msa0437780 | 0.814835 | 1.258571e-51 | -8.615850e-47 |
| Msa0269830 | Msa0437780 | 0.807297 | 5.414323e-50 | -8.615850e-47 |
| Msa0280140 | Msa0437780 | 0.842313 | 2.790021e-58 | -8.615850e-47 |
| Msa0282860 | Msa0437780 | 0.807603 | 4.662874e-50 | -8.615850e-47 |
| Msa0288220 | Msa0437780 | 0.805636 | 1.213384e-49 | -8.615850e-47 |
| Msa0296000 | Msa0437780 | 0.816405 | 5.624776e-52 | -8.615850e-47 |
| Msa0308430 | Msa0437780 | 0.839203 | 1.823852e-57 | -8.615850e-47 |
| Msa0313800 | Msa0437780 | 0.831291 | 1.814518e-55 | -8.615850e-47 |
| Msa0327900 | Msa0437780 | 0.808812 | 2.576495e-50 | -8.615850e-47 |
| Msa0333900 | Msa0437780 | 0.839280 | 1.741075e-57 | -8.615850e-47 |
| Msa0334020 | Msa0437780 | 0.837606 | 4.706252e-57 | -8.615850e-47 |
| Msa0334980 | Msa0437780 | 0.815849 | 7.488388e-52 | -8.615850e-47 |
| Msa0340440 | Msa0437780 | 0.826720 | 2.323869e-54 | -8.615850e-47 |
| Msa0342620 | Msa0437780 | 0.816521 | 5.297202e-52 | -8.615850e-47 |
| Msa0350020 | Msa0437780 | 0.801368 | 9.306797e-49 | -8.615850e-47 |
| Msa0352200 | Msa0437780 | 0.803595 | 3.234782e-49 | -8.615850e-47 |
| Msa0362840 | Msa0437780 | 0.801085 | 1.063289e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437780 | MtrunA17_Chr1g0213311 | 97.015 | 402 | 11 | 1 | 1 | 401 | 1 | 402 | 0.0 | 808 |
| Msa0437780 | MtrunA17_Chr7g0214501 | 49.835 | 303 | 93 | 6 | 85 | 381 | 1 | 250 | 3.50e-77 | 241 |
| Msa0437780 | MtrunA17_Chr3g0079841 | 44.690 | 226 | 104 | 5 | 24 | 247 | 29 | 235 | 3.80e-52 | 175 |
| Msa0437780 | MtrunA17_Chr3g0143581 | 51.064 | 141 | 66 | 2 | 23 | 162 | 19 | 157 | 1.74e-43 | 149 |
| Msa0437780 | MtrunA17_Chr3g0143571 | 46.259 | 147 | 77 | 1 | 191 | 337 | 23 | 167 | 3.25e-34 | 125 |
| Msa0437780 | MtrunA17_Chr7g0214491 | 65.882 | 85 | 28 | 1 | 1 | 84 | 1 | 85 | 6.05e-34 | 122 |
| Msa0437780 | MtrunA17_Chr5g0435401 | 22.662 | 278 | 181 | 8 | 66 | 320 | 70 | 336 | 3.19e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437780 | AT1G04880.1 | 60.000 | 380 | 114 | 11 | 1 | 362 | 1 | 360 | 1.33e-134 | 393 |
| Msa0437780 | AT1G76110.1 | 44.643 | 336 | 162 | 8 | 2 | 334 | 12 | 326 | 9.28e-85 | 262 |
| Msa0437780 | AT3G13350.1 | 45.545 | 303 | 133 | 4 | 29 | 330 | 34 | 305 | 1.76e-82 | 255 |
| Msa0437780 | AT1G55650.1 | 36.562 | 320 | 154 | 7 | 12 | 330 | 11 | 282 | 1.75e-60 | 199 |
Find 117 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCACTTCTGTTTGGTTT+TGG | 0.220656 | 3_3:-1812488 | None:intergenic |
| ATTGCAGGATTCCTGTTATT+GGG | 0.246287 | 3_3:+1809651 | Msa0437780:intron |
| CACAGTGATCAACTGGGTTT+TGG | 0.268345 | 3_3:+1813365 | Msa0437780:three_prime_UTR |
| TATTGCAGGATTCCTGTTAT+TGG | 0.282044 | 3_3:+1809650 | Msa0437780:intron |
| AAAAGGTAAAACAAACAAAA+AGG | 0.325022 | 3_3:-1809225 | None:intergenic |
| TGTGGATTCATTGCCTGTTA+TGG | 0.326537 | 3_3:+1813185 | Msa0437780:CDS |
| GAAGCATTTGTAGCCGTTGA+TGG | 0.327945 | 3_3:-1810154 | None:intergenic |
| AATAATAGATTTGTTCATAA+TGG | 0.330253 | 3_3:-1810213 | None:intergenic |
| GTACCTCTCTTTGTCCTTCA+CGG | 0.336959 | 3_3:-1812962 | None:intergenic |
| TCAGTTTGAGGTGTTTGTTT+TGG | 0.337746 | 3_3:+1813399 | Msa0437780:three_prime_UTR |
| CACAAATCACAGTGATCAAC+TGG | 0.338301 | 3_3:+1813358 | Msa0437780:three_prime_UTR |
| GTATGTGAAAACTGCATCTT+TGG | 0.346993 | 3_3:-1810390 | None:intergenic |
| GTGGATTCATTGCCTGTTAT+GGG | 0.359014 | 3_3:+1813186 | Msa0437780:CDS |
| CGGCAGGATCTCAGGTTGTC+GGG | 0.362545 | 3_3:+1812252 | Msa0437780:CDS |
| ACCATCCAGTATTTGTAGAT+AGG | 0.366275 | 3_3:-1809126 | None:intergenic |
| AGAAAGAAGAAATGTTAGCT+AGG | 0.370972 | 3_3:+1813247 | Msa0437780:three_prime_UTR |
| TTCCGCGTCTGATCTCTAAA+TGG | 0.372840 | 3_3:+1813478 | Msa0437780:three_prime_UTR |
| AGATCATTAAAGATAGAAAA+TGG | 0.378478 | 3_3:+1810104 | Msa0437780:intron |
| GCTCAAAGCTGTCTCTTTCA+TGG | 0.381404 | 3_3:-1809339 | None:intergenic |
| GCATTCAACATGTCAGTATC+TGG | 0.384305 | 3_3:-1813072 | None:intergenic |
| TGCATCTTTGGAGCAGGAGC+TGG | 0.387029 | 3_3:-1810378 | None:intergenic |
| CAGGTTGTCGGGGTCATTGA+TGG | 0.395002 | 3_3:+1812263 | Msa0437780:CDS |
| GCTGAATATATGATCCTAAC+AGG | 0.396426 | 3_3:+1813441 | Msa0437780:three_prime_UTR |
| TATCTAGTTACTGTCACAAT+TGG | 0.419081 | 3_3:+1812302 | Msa0437780:CDS |
| ATCTGTTTCAGCATCCTGTT+AGG | 0.421335 | 3_3:-1813455 | None:intergenic |
| TCAGCACCAACTCCCATAAC+AGG | 0.424034 | 3_3:-1813198 | None:intergenic |
| AAATTGTATCCACTTCTGTT+TGG | 0.426908 | 3_3:-1812494 | None:intergenic |
| CTCAGCAATGGGATCATCTT+CGG | 0.429472 | 3_3:+1812232 | Msa0437780:intron |
| TCATTGCCTGTTATGGGAGT+TGG | 0.435413 | 3_3:+1813192 | Msa0437780:CDS |
| ATCATCTTCGGCAGGATCTC+AGG | 0.435568 | 3_3:+1812244 | Msa0437780:CDS |
| ATTGATGGGAAATTTGATAG+TGG | 0.443834 | 3_3:+1812278 | Msa0437780:CDS |
| GAAAGAAGAAATGTTAGCTA+GGG | 0.444580 | 3_3:+1813248 | Msa0437780:three_prime_UTR |
| CTGTGATTTGTGCTTAAAGT+AGG | 0.451073 | 3_3:-1813347 | None:intergenic |
| CCATCCAGTATTTGTAGATA+GGG | 0.451719 | 3_3:-1809125 | None:intergenic |
| AGAGAGGTACATAACAGAAA+TGG | 0.452384 | 3_3:+1812975 | Msa0437780:CDS |
| TCGGCAGGATCTCAGGTTGT+CGG | 0.453538 | 3_3:+1812251 | Msa0437780:CDS |
| TGTTAGCTAGGGAATGGAAT+AGG | 0.454932 | 3_3:+1813259 | Msa0437780:three_prime_UTR |
| TGTTGTTAGCAGGAACACTA+TGG | 0.456419 | 3_3:-1812388 | None:intergenic |
| GCTGTCTCTTTCATGGGTAA+TGG | 0.461532 | 3_3:-1809332 | None:intergenic |
| CAAGCTCTTCATACTTAGCT+TGG | 0.463066 | 3_3:+1809415 | Msa0437780:CDS |
| GAACATACCGGAAGTTGTAT+TGG | 0.464656 | 3_3:-1810254 | None:intergenic |
| TGGTGGGATGCTGGCAGCAC+AGG | 0.472613 | 3_3:-1812368 | None:intergenic |
| AACTGGACCAATACAACTTC+CGG | 0.475197 | 3_3:+1810247 | Msa0437780:CDS |
| AGTTACTGTCACAATTGGTT+CGG | 0.475294 | 3_3:+1812307 | Msa0437780:CDS |
| GGAAGGACCGAGAGATTAGT+AGG | 0.477594 | 3_3:+1812561 | Msa0437780:CDS |
| TTCACCTATGGCAACATATG+AGG | 0.483062 | 3_3:+1809376 | Msa0437780:CDS |
| AACATGTCAGTATCTGGTTC+AGG | 0.486501 | 3_3:-1813066 | None:intergenic |
| GCGGTCACGTTGTTGTTAGC+AGG | 0.489436 | 3_3:-1812398 | None:intergenic |
| CAAGCTAAGTATGAAGAGCT+TGG | 0.497014 | 3_3:-1809414 | None:intergenic |
| GCGCCACCATTAACAAGAAA+AGG | 0.497363 | 3_3:-1809242 | None:intergenic |
| CTTTGGAGCAGGAGCTGGGA+TGG | 0.499860 | 3_3:-1810373 | None:intergenic |
| GGAACACTATGGTGGGATGC+TGG | 0.501068 | 3_3:-1812377 | None:intergenic |
| TTTAACTGTTGAAAGACAGC+TGG | 0.504737 | 3_3:-1810429 | None:intergenic |
| CCAGGGAGCCTACATGAACT+TGG | 0.508162 | 3_3:-1809462 | None:intergenic |
| TGATGACTATGAAGATGATA+AGG | 0.508495 | 3_3:+1813143 | Msa0437780:CDS |
| GTGTCCATCGTCGCCGACGC+AGG | 0.509894 | 3_3:+1812429 | Msa0437780:CDS |
| TTTGTTGAAGTGACTTCTCG+TGG | 0.510774 | 3_3:+1809701 | Msa0437780:CDS |
| GGAGAAGCTCCACACTCTCA+TGG | 0.512213 | 3_3:+1809436 | Msa0437780:CDS |
| AAGAAATGTTAGCTAGGGAA+TGG | 0.514183 | 3_3:+1813253 | Msa0437780:three_prime_UTR |
| AAGCTAAGTATGAAGAGCTT+GGG | 0.516105 | 3_3:-1809413 | None:intergenic |
| CGGTCCTTCCCTCGGTGAAG+AGG | 0.519858 | 3_3:-1812548 | None:intergenic |
| GCATCTTTGGAGCAGGAGCT+GGG | 0.522935 | 3_3:-1810377 | None:intergenic |
| CGAGAGATTAGTAGGACCAT+TGG | 0.525975 | 3_3:+1812569 | Msa0437780:CDS |
| TGGTGAATATCCTTCACCTA+TGG | 0.528306 | 3_3:+1809364 | Msa0437780:CDS |
| CCCTATCTACAAATACTGGA+TGG | 0.528432 | 3_3:+1809125 | Msa0437780:five_prime_UTR |
| TTGCAGGATTCCTGTTATTG+GGG | 0.528895 | 3_3:+1809652 | Msa0437780:intron |
| TTTCTTGTTAATGGTGGCGC+AGG | 0.531689 | 3_3:+1809245 | Msa0437780:five_prime_UTR |
| TGAATATATTAAGTTGTGAA+TGG | 0.532675 | 3_3:+1809283 | Msa0437780:exon |
| TAATCTCTCGGTCCTTCCCT+CGG | 0.534837 | 3_3:-1812556 | None:intergenic |
| GAAAACTGCATCTTTGGAGC+AGG | 0.538241 | 3_3:-1810384 | None:intergenic |
| CTCAAAGCTGTCTCTTTCAT+GGG | 0.539064 | 3_3:-1809338 | None:intergenic |
| TCTTCCTGCGTCGGCGACGA+TGG | 0.540297 | 3_3:-1812433 | None:intergenic |
| TTGAAGTGACTTCTCGTGGA+GGG | 0.541093 | 3_3:+1809705 | Msa0437780:CDS |
| CCGTCTGAACTACTCTGCTC+CGG | 0.545473 | 3_3:-1813117 | None:intergenic |
| GATCATTCTTCAACTTCTCA+CGG | 0.547465 | 3_3:-1813005 | None:intergenic |
| CAATGGTCCTACTAATCTCT+CGG | 0.547885 | 3_3:-1812568 | None:intergenic |
| GTTAATTCTGCTCCGCCTGA+AGG | 0.550930 | 3_3:+1810453 | Msa0437780:CDS |
| GTAGGACCATTGGTGAACTC+TGG | 0.551646 | 3_3:+1812579 | Msa0437780:CDS |
| CACCCAAAACCAAACAGAAG+TGG | 0.557660 | 3_3:+1812485 | Msa0437780:CDS |
| AGGTTGTCGGGGTCATTGAT+GGG | 0.564891 | 3_3:+1812264 | Msa0437780:CDS |
| TCATATGTTGCCATAGGTGA+AGG | 0.568033 | 3_3:-1809374 | None:intergenic |
| TCTCTGATTTCTTCCTGCGT+CGG | 0.568830 | 3_3:-1812442 | None:intergenic |
| GGCAGACTCTCTTCAAACTC+CGG | 0.569431 | 3_3:+1813098 | Msa0437780:CDS |
| GAGAAGCTCCACACTCTCAT+GGG | 0.571795 | 3_3:+1809437 | Msa0437780:CDS |
| TCTTTGCAGAACAGCATCCA+AGG | 0.571889 | 3_3:+1812519 | Msa0437780:CDS |
| GCAATGGGATCATCTTCGGC+AGG | 0.580770 | 3_3:+1812236 | Msa0437780:intron |
| TCAGGAAATCGCTGTTGAAG+TGG | 0.581487 | 3_3:-1813048 | None:intergenic |
| AAAGAGACAGCTTTGAGCCA+TGG | 0.588397 | 3_3:+1809344 | Msa0437780:CDS |
| GGCTAAAACCTCTTCACCGA+GGG | 0.597780 | 3_3:+1812540 | Msa0437780:CDS |
| TGTTAGCAGGAACACTATGG+TGG | 0.605828 | 3_3:-1812385 | None:intergenic |
| ATTGTCAAAACTCAAATCAA+CGG | 0.606958 | 3_3:+1813547 | Msa0437780:three_prime_UTR |
| AAGACAGCTGGTTGAACTTG+TGG | 0.608568 | 3_3:-1810417 | None:intergenic |
| CCGGAGCAGAGTAGTTCAGA+CGG | 0.612929 | 3_3:+1813117 | Msa0437780:CDS |
| CTATGAAGATGATAAGGCGA+AGG | 0.615408 | 3_3:+1813149 | Msa0437780:CDS |
| TTATCAAGATAAAGCCGTGA+AGG | 0.616173 | 3_3:+1812948 | Msa0437780:CDS |
| GCTGAGACTTTGAGTTGCAG+TGG | 0.618681 | 3_3:+1813321 | Msa0437780:three_prime_UTR |
| CTTGTTCCAGAGTTCACCAA+TGG | 0.619707 | 3_3:-1812585 | None:intergenic |
| ACCTCCTCATATGTTGCCAT+AGG | 0.625420 | 3_3:-1809380 | None:intergenic |
| AAAACCTCTTCACCGAGGGA+AGG | 0.626858 | 3_3:+1812544 | Msa0437780:CDS |
| ACCTATGGCAACATATGAGG+AGG | 0.630539 | 3_3:+1809379 | Msa0437780:CDS |
| AACAACGTGACCGCCTCTGT+CGG | 0.631474 | 3_3:+1812407 | Msa0437780:CDS |
| GTTGAAGTGACTTCTCGTGG+AGG | 0.634997 | 3_3:+1809704 | Msa0437780:CDS |
| GGCAGGATCTCAGGTTGTCG+GGG | 0.638448 | 3_3:+1812253 | Msa0437780:CDS |
| TGCAGGATTCCTGTTATTGG+GGG | 0.639336 | 3_3:+1809653 | Msa0437780:intron |
| AAGCCGTGAAGGACAAAGAG+AGG | 0.641251 | 3_3:+1812959 | Msa0437780:CDS |
| ATTGGTTCGGAGAAACTCAA+AGG | 0.644223 | 3_3:+1812320 | Msa0437780:CDS |
| GCGACGATGGACACCGACAG+AGG | 0.659779 | 3_3:-1812420 | None:intergenic |
| TACTGACATGTTGAATGCTG+AGG | 0.661079 | 3_3:+1813077 | Msa0437780:CDS |
| GAGAAGTCACTTCAACAAAG+AGG | 0.662036 | 3_3:-1809697 | None:intergenic |
| ACTTGGTGCCCATGAGAGTG+TGG | 0.664789 | 3_3:-1809445 | None:intergenic |
| ACGATGGACACCGACAGAGG+CGG | 0.677611 | 3_3:-1812417 | None:intergenic |
| GCAAAGCAAAGACCTTCAGG+CGG | 0.704080 | 3_3:-1810465 | None:intergenic |
| ACAAATCACAGTGATCAACT+GGG | 0.709759 | 3_3:+1813359 | Msa0437780:three_prime_UTR |
| GACCATTTAGAGATCAGACG+CGG | 0.710134 | 3_3:-1813480 | None:intergenic |
| TAGGTGAAGGATATTCACCA+TGG | 0.732815 | 3_3:-1809361 | None:intergenic |
| AGGCTAAAACCTCTTCACCG+AGG | 0.737163 | 3_3:+1812539 | Msa0437780:CDS |
| GTTAGCAGGAACACTATGGT+GGG | 0.739497 | 3_3:-1812384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTTTTATTTTAAGATG+TGG | + | chr3_3:1809519-1809538 | Msa0437780:intron | 15.0% |
| !!! | GATTATAATTTCAATTTTGT+TGG | + | chr3_3:1809746-1809765 | Msa0437780:intron | 15.0% |
| !!! | AATAATAGATTTGTTCATAA+TGG | - | chr3_3:1810216-1810235 | None:intergenic | 15.0% |
| !!! | TTAGTAGTTAATCTTATTTT+GGG | - | chr3_3:1810500-1810519 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGAGAATATTTT+AGG | + | chr3_3:1810547-1810566 | Msa0437780:intron | 15.0% |
| !! | AAAAAAACATACAAAAGATT+AGG | - | chr3_3:1812123-1812142 | None:intergenic | 15.0% |
| !! | ATAAACAATACTAGTTATTA+TGG | - | chr3_3:1812201-1812220 | None:intergenic | 15.0% |
| !! | AAAAGGTAAAACAAACAAAA+AGG | - | chr3_3:1809228-1809247 | None:intergenic | 20.0% |
| !!! | TGAATATATTAAGTTGTGAA+TGG | + | chr3_3:1809283-1809302 | Msa0437780:exon | 20.0% |
| !! | TTGCAATTACAAAAAACATT+TGG | + | chr3_3:1809622-1809641 | Msa0437780:intron | 20.0% |
| !!! | ATTCTTTTGAATCATAACTT+TGG | + | chr3_3:1810022-1810041 | Msa0437780:intron | 20.0% |
| !! | AGATCATTAAAGATAGAAAA+TGG | + | chr3_3:1810104-1810123 | Msa0437780:intron | 20.0% |
| !! | TTCCAATTTATACATTAGAA+GGG | - | chr3_3:1810317-1810336 | None:intergenic | 20.0% |
| !! | TTTCCAATTTATACATTAGA+AGG | - | chr3_3:1810318-1810337 | None:intergenic | 20.0% |
| !! | ATAAATTGGAAATTTCACTA+TGG | + | chr3_3:1810326-1810345 | Msa0437780:intron | 20.0% |
| !!! | GTTAGTAGTTAATCTTATTT+TGG | - | chr3_3:1810501-1810520 | None:intergenic | 20.0% |
| !! | TTAGGTTATGTTTAAATTGA+TGG | + | chr3_3:1810565-1810584 | Msa0437780:intron | 20.0% |
| !! | TTATGTTTAAATTGATGGAA+AGG | + | chr3_3:1810570-1810589 | Msa0437780:intron | 20.0% |
| !! | TATGTTTAAATTGATGGAAA+GGG | + | chr3_3:1810571-1810590 | Msa0437780:intron | 20.0% |
| !! | TCATTATTTGAGAATTGAAA+TGG | - | chr3_3:1810952-1810971 | None:intergenic | 20.0% |
| !! | TCAATTCTCAAATAATGAAA+TGG | + | chr3_3:1810954-1810973 | Msa0437780:intron | 20.0% |
| !!! | TAGTTTTCAATCTAGATATA+TGG | + | chr3_3:1811078-1811097 | Msa0437780:intron | 20.0% |
| !! | TATTATGAGCTTACATTTAA+TGG | + | chr3_3:1811345-1811364 | Msa0437780:intron | 20.0% |
| !! | ATTATGAGCTTACATTTAAT+GGG | + | chr3_3:1811346-1811365 | Msa0437780:intron | 20.0% |
| !! | CAATCCTATATTAAGTTTAA+AGG | - | chr3_3:1811981-1812000 | None:intergenic | 20.0% |
| ! | AACAAACAAAAAGGAGAAAT+AGG | - | chr3_3:1809219-1809238 | None:intergenic | 25.0% |
| !! | GTTTTACCTTTTCTTGTTAA+TGG | + | chr3_3:1809236-1809255 | Msa0437780:five_prime_UTR | 25.0% |
| ! | ATTCGTAGTTTATAAATCCA+GGG | - | chr3_3:1809482-1809501 | None:intergenic | 25.0% |
| ! | AATTCGTAGTTTATAAATCC+AGG | - | chr3_3:1809483-1809502 | None:intergenic | 25.0% |
| ! | TGCAAAGTTATACAAGTAAA+TGG | - | chr3_3:1809607-1809626 | None:intergenic | 25.0% |
| !!! | AACATTTGGAATTTTATTGC+AGG | + | chr3_3:1809636-1809655 | Msa0437780:intron | 25.0% |
| !! | ACTGATAATGTCCAAAATAT+AGG | + | chr3_3:1809816-1809835 | Msa0437780:intron | 25.0% |
| !! | AGTTTTCAATTTTCCATCAA+CGG | + | chr3_3:1810141-1810160 | Msa0437780:CDS | 25.0% |
| ! | TCCAATTTATACATTAGAAG+GGG | - | chr3_3:1810316-1810335 | None:intergenic | 25.0% |
| !! | TTCAATTTCCTTTTTCTTAG+TGG | - | chr3_3:1810523-1810542 | None:intergenic | 25.0% |
| ! | ATGTTTAAATTGATGGAAAG+GGG | + | chr3_3:1810572-1810591 | Msa0437780:intron | 25.0% |
| ! | TCAAATTTCACTACTCTATA+GGG | - | chr3_3:1810802-1810821 | None:intergenic | 25.0% |
| ! | TTCAAATTTCACTACTCTAT+AGG | - | chr3_3:1810803-1810822 | None:intergenic | 25.0% |
| !! | TGCTATTTAGTACAAAATAG+CGG | + | chr3_3:1810846-1810865 | Msa0437780:intron | 25.0% |
| !! | TAAGTCAATTTTATCAATGG+AGG | - | chr3_3:1810925-1810944 | None:intergenic | 25.0% |
| !! | AGGTAAGTCAATTTTATCAA+TGG | - | chr3_3:1810928-1810947 | None:intergenic | 25.0% |
| ! | TATTTGAGAATTGAAATGGT+AGG | - | chr3_3:1810948-1810967 | None:intergenic | 25.0% |
| ! | ATTGTTTGATTGTTTCATTG+AGG | - | chr3_3:1810990-1811009 | None:intergenic | 25.0% |
| ! | TCAATGAAACAATCAAACAA+TGG | + | chr3_3:1810989-1811008 | Msa0437780:intron | 25.0% |
| ! | AAACAATCAAACAATGGAAT+AGG | + | chr3_3:1810995-1811014 | Msa0437780:intron | 25.0% |
| ! | AACAATCAAACAATGGAATA+GGG | + | chr3_3:1810996-1811015 | Msa0437780:intron | 25.0% |
| ! | CTATTTAACGATTAGAGAAA+TGG | - | chr3_3:1811061-1811080 | None:intergenic | 25.0% |
| ! | TAATATAGTATCTTTCTCCT+AGG | + | chr3_3:1811118-1811137 | Msa0437780:intron | 25.0% |
| !! | ATGATTTTCCATGACTTAAT+CGG | + | chr3_3:1811142-1811161 | Msa0437780:intron | 25.0% |
| !! | TGATGGTCTTTTAAATCTAT+TGG | + | chr3_3:1811179-1811198 | Msa0437780:intron | 25.0% |
| !!! | TGCCTTATTTTATCATCAAA+AGG | + | chr3_3:1811295-1811314 | Msa0437780:intron | 25.0% |
| !!! | GTCCTTTTGATGATAAAATA+AGG | - | chr3_3:1811300-1811319 | None:intergenic | 25.0% |
| !!! | TAGGTAAATGTTAGTTTTCA+AGG | + | chr3_3:1811458-1811477 | Msa0437780:intron | 25.0% |
| !!! | AAGGAAGTTTTGTTTTCATT+TGG | - | chr3_3:1811597-1811616 | None:intergenic | 25.0% |
| !! | TGTAAGATTTGTGCTATTAT+AGG | - | chr3_3:1811709-1811728 | None:intergenic | 25.0% |
| !!! | ACATTTTAAGTTTAGTATCG+TGG | + | chr3_3:1811726-1811745 | Msa0437780:intron | 25.0% |
| !!! | AAAAGTACTAGAGTGAAAAT+TGG | + | chr3_3:1811799-1811818 | Msa0437780:intron | 25.0% |
| !! | AAAGTACTAGAGTGAAAATT+GGG | + | chr3_3:1811800-1811819 | Msa0437780:intron | 25.0% |
| ! | ACATTTATCACTAAATCTCT+CGG | - | chr3_3:1811954-1811973 | None:intergenic | 25.0% |
| ! | TCCACCTTTAAACTTAATAT+AGG | + | chr3_3:1811974-1811993 | Msa0437780:intron | 25.0% |
| ! | TCCTATATTAAGTTTAAAGG+TGG | - | chr3_3:1811978-1811997 | None:intergenic | 25.0% |
| ! | AATAGAAAGAATGGTTAACA+GGG | - | chr3_3:1812088-1812107 | None:intergenic | 25.0% |
| ! | AAATAGAAAGAATGGTTAAC+AGG | - | chr3_3:1812089-1812108 | None:intergenic | 25.0% |
| !! | GTTAACCATTCTTTCTATTT+TGG | + | chr3_3:1812089-1812108 | Msa0437780:intron | 25.0% |
| !!! | ATTCTTTCTATTTTGGAAGT+GGG | + | chr3_3:1812096-1812115 | Msa0437780:intron | 25.0% |
| ! | ATAACAGTAAGAGAAGTTAT+AGG | - | chr3_3:1812173-1812192 | None:intergenic | 25.0% |
| !! | TTAACACATCTTTTATGAGT+TGG | + | chr3_3:1812642-1812661 | Msa0437780:intron | 25.0% |
| ! | TAAGTAATCTCTAATCTATC+TGG | + | chr3_3:1812748-1812767 | Msa0437780:intron | 25.0% |
| !!! | TCTAATTTTTAAAGCTTCTG+GGG | - | chr3_3:1812789-1812808 | None:intergenic | 25.0% |
| !!! | CTCTAATTTTTAAAGCTTCT+GGG | - | chr3_3:1812790-1812809 | None:intergenic | 25.0% |
| !!! | TCTCTAATTTTTAAAGCTTC+TGG | - | chr3_3:1812791-1812810 | None:intergenic | 25.0% |
| ! | TCTTGATAAACCTTAAATGT+TGG | - | chr3_3:1812937-1812956 | None:intergenic | 25.0% |
| ! | ATTGTCAAAACTCAAATCAA+CGG | + | chr3_3:1813547-1813566 | Msa0437780:three_prime_UTR | 25.0% |
| ! | TTTTCCCTATCTACAAATAC+TGG | + | chr3_3:1809121-1809140 | Msa0437780:five_prime_UTR | 30.0% |
| ! | TTACCTTTTCTTGTTAATGG+TGG | + | chr3_3:1809239-1809258 | Msa0437780:five_prime_UTR | 30.0% |
| ACGAATTAGATATTGTGACT+TGG | + | chr3_3:1809496-1809515 | Msa0437780:intron | 30.0% | |
| ! | ATTTTGTTGGTATGAATGCA+TGG | + | chr3_3:1809759-1809778 | Msa0437780:intron | 30.0% |
| CTACATATTCACACAATGTT+TGG | - | chr3_3:1809794-1809813 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTTTCCTACATGTT+TGG | + | chr3_3:1810040-1810059 | Msa0437780:intron | 30.0% |
| !!! | ATTATTTTAAAGCTCGCAAC+TGG | + | chr3_3:1810230-1810249 | Msa0437780:CDS | 30.0% |
| ACTACTAACCACTAAGAAAA+AGG | + | chr3_3:1810512-1810531 | Msa0437780:intron | 30.0% | |
| ! | TTGTTTGGATTGTCTGAAAT+AGG | + | chr3_3:1810606-1810625 | Msa0437780:intron | 30.0% |
| GGTTAAAAACTATAGAGATG+TGG | - | chr3_3:1810669-1810688 | None:intergenic | 30.0% | |
| ! | CTCTATAGTTTTTAACCTGT+CGG | + | chr3_3:1810672-1810691 | Msa0437780:intron | 30.0% |
| ! | TCTATAGTTTTTAACCTGTC+GGG | + | chr3_3:1810673-1810692 | Msa0437780:intron | 30.0% |
| TAATTAACAACAGTAGGGTA+GGG | - | chr3_3:1810758-1810777 | None:intergenic | 30.0% | |
| TTGTTAATTAGTGGCTACAT+CGG | + | chr3_3:1810768-1810787 | Msa0437780:intron | 30.0% | |
| TTAGAGAAATGGAATCAGAA+AGG | - | chr3_3:1811050-1811069 | None:intergenic | 30.0% | |
| TGTATATTCCGATTAAGTCA+TGG | - | chr3_3:1811153-1811172 | None:intergenic | 30.0% | |
| ! | CGGAATATACATGATTTTGA+TGG | + | chr3_3:1811162-1811181 | Msa0437780:intron | 30.0% |
| CATTAAGATGAATGAGTTGT+CGG | + | chr3_3:1811757-1811776 | Msa0437780:intron | 30.0% | |
| AAGTACTAGAGTGAAAATTG+GGG | + | chr3_3:1811801-1811820 | Msa0437780:intron | 30.0% | |
| TAAAGGATATTCCAATAGTC+AGG | + | chr3_3:1811903-1811922 | Msa0437780:intron | 30.0% | |
| AAAGGATATTCCAATAGTCA+GGG | + | chr3_3:1811904-1811923 | Msa0437780:intron | 30.0% | |
| GTATAGGGTTTGATATATGT+TGG | + | chr3_3:1812046-1812065 | Msa0437780:intron | 30.0% | |
| CACTTCCAAAATAGAAAGAA+TGG | - | chr3_3:1812097-1812116 | None:intergenic | 30.0% | |
| !! | CATTCTTTCTATTTTGGAAG+TGG | + | chr3_3:1812095-1812114 | Msa0437780:intron | 30.0% |
| ATTGATGGGAAATTTGATAG+TGG | + | chr3_3:1812278-1812297 | Msa0437780:CDS | 30.0% | |
| TATCTAGTTACTGTCACAAT+TGG | + | chr3_3:1812302-1812321 | Msa0437780:CDS | 30.0% | |
| AAATTGTATCCACTTCTGTT+TGG | - | chr3_3:1812497-1812516 | None:intergenic | 30.0% | |
| CAATAGTTCTTAGACCAAAT+AGG | - | chr3_3:1812720-1812739 | None:intergenic | 30.0% | |
| !!! | CTAATTTTTAAAGCTTCTGG+GGG | - | chr3_3:1812788-1812807 | None:intergenic | 30.0% |
| AAATTAGAGAATGATAGCTC+AGG | + | chr3_3:1812801-1812820 | Msa0437780:intron | 30.0% | |
| AATTAGAGAATGATAGCTCA+GGG | + | chr3_3:1812802-1812821 | Msa0437780:intron | 30.0% | |
| AAGCTCAGATATGCATTATT+TGG | + | chr3_3:1812870-1812889 | Msa0437780:intron | 30.0% | |
| ! | TTAAGTTGCACCAACATTTA+AGG | + | chr3_3:1812924-1812943 | Msa0437780:intron | 30.0% |
| TGATGACTATGAAGATGATA+AGG | + | chr3_3:1813143-1813162 | Msa0437780:CDS | 30.0% | |
| AGAAAGAAGAAATGTTAGCT+AGG | + | chr3_3:1813247-1813266 | Msa0437780:three_prime_UTR | 30.0% | |
| GAAAGAAGAAATGTTAGCTA+GGG | + | chr3_3:1813248-1813267 | Msa0437780:three_prime_UTR | 30.0% | |
| !! | GCATTTTAGTATTCAGTTTG+AGG | + | chr3_3:1813387-1813406 | Msa0437780:three_prime_UTR | 30.0% |
| CCATCCAGTATTTGTAGATA+GGG | - | chr3_3:1809128-1809147 | None:intergenic | 35.0% | |
| ACCATCCAGTATTTGTAGAT+AGG | - | chr3_3:1809129-1809148 | None:intergenic | 35.0% | |
| AAGCTAAGTATGAAGAGCTT+GGG | - | chr3_3:1809416-1809435 | None:intergenic | 35.0% | |
| TATTGCAGGATTCCTGTTAT+TGG | + | chr3_3:1809650-1809669 | Msa0437780:intron | 35.0% | |
| ATTGCAGGATTCCTGTTATT+GGG | + | chr3_3:1809651-1809670 | Msa0437780:intron | 35.0% | |
| ATCACTACAACCAAACATGT+AGG | - | chr3_3:1810053-1810072 | None:intergenic | 35.0% | |
| AGTGATACAGTTACCTTATC+TGG | + | chr3_3:1810067-1810086 | Msa0437780:intron | 35.0% | |
| CAAGACAGATTAACCAGATA+AGG | - | chr3_3:1810083-1810102 | None:intergenic | 35.0% | |
| TGTAGTTCCAATGAACATAC+CGG | - | chr3_3:1810269-1810288 | None:intergenic | 35.0% | |
| !! | TTGCTGTTTGTACTAATGTC+AGG | + | chr3_3:1810289-1810308 | Msa0437780:intron | 35.0% |
| ! | TGCTGTTTGTACTAATGTCA+GGG | + | chr3_3:1810290-1810309 | Msa0437780:intron | 35.0% |
| GCCCCTTCTAATGTATAAAT+TGG | + | chr3_3:1810312-1810331 | Msa0437780:intron | 35.0% | |
| GTATGTGAAAACTGCATCTT+TGG | - | chr3_3:1810393-1810412 | None:intergenic | 35.0% | |
| TTTAACTGTTGAAAGACAGC+TGG | - | chr3_3:1810432-1810451 | None:intergenic | 35.0% | |
| ! | ATTGTCTGAAATAGGATGTG+AGG | + | chr3_3:1810614-1810633 | Msa0437780:intron | 35.0% |
| AAACTATAGAGATGTGGTGA+TGG | - | chr3_3:1810663-1810682 | None:intergenic | 35.0% | |
| ! | TTTTTAACCTGTCGGGATAT+TGG | + | chr3_3:1810680-1810699 | Msa0437780:intron | 35.0% |
| ! | TTTTAACCTGTCGGGATATT+GGG | + | chr3_3:1810681-1810700 | Msa0437780:intron | 35.0% |
| AATTAACAACAGTAGGGTAG+GGG | - | chr3_3:1810757-1810776 | None:intergenic | 35.0% | |
| CTAATTAACAACAGTAGGGT+AGG | - | chr3_3:1810759-1810778 | None:intergenic | 35.0% | |
| ACCCTACTGTTGTTAATTAG+TGG | + | chr3_3:1810759-1810778 | Msa0437780:intron | 35.0% | |
| GCCACTAATTAACAACAGTA+GGG | - | chr3_3:1810763-1810782 | None:intergenic | 35.0% | |
| AGCCACTAATTAACAACAGT+AGG | - | chr3_3:1810764-1810783 | None:intergenic | 35.0% | |
| TGGAGGATCAAGAAAAATAG+CGG | - | chr3_3:1810908-1810927 | None:intergenic | 35.0% | |
| GATTGTTTCATTGAGGAACT+AGG | - | chr3_3:1810983-1811002 | None:intergenic | 35.0% | |
| AGTCATGGAAAATCATTCCT+AGG | - | chr3_3:1811138-1811157 | None:intergenic | 35.0% | |
| ! | ACATAATTTGTCATCGTGCA+CGG | - | chr3_3:1811272-1811291 | None:intergenic | 35.0% |
| ATGAGCTTACATTTAATGGG+TGG | + | chr3_3:1811349-1811368 | Msa0437780:intron | 35.0% | |
| ! | TGAGCTTACATTTAATGGGT+GGG | + | chr3_3:1811350-1811369 | Msa0437780:intron | 35.0% |
| TATTGAAAAACCATCTCCCT+CGG | - | chr3_3:1811440-1811459 | None:intergenic | 35.0% | |
| !! | TTAGTTTTCAAGGTTTGCTC+AGG | + | chr3_3:1811468-1811487 | Msa0437780:intron | 35.0% |
| TTGTAAGACGTCACAATGTT+TGG | + | chr3_3:1811494-1811513 | Msa0437780:intron | 35.0% | |
| AGCAAGAAACTCACAGATTA+TGG | + | chr3_3:1811661-1811680 | Msa0437780:intron | 35.0% | |
| ! | TTGTGCTATTATAGGATCAC+AGG | - | chr3_3:1811701-1811720 | None:intergenic | 35.0% |
| TTGTCGGACAATATAGTACT+AGG | + | chr3_3:1811773-1811792 | Msa0437780:intron | 35.0% | |
| TCGTTACTAGTACTTACACA+TGG | - | chr3_3:1811871-1811890 | None:intergenic | 35.0% | |
| AACGAGAGTTGACTAGATAA+AGG | + | chr3_3:1811886-1811905 | Msa0437780:intron | 35.0% | |
| TAAATCTCTCGGTACTAGTT+TGG | - | chr3_3:1811943-1811962 | None:intergenic | 35.0% | |
| ATATCAAACCCTATACCACT+AGG | - | chr3_3:1812042-1812061 | None:intergenic | 35.0% | |
| AGTTACTGTCACAATTGGTT+CGG | + | chr3_3:1812307-1812326 | Msa0437780:CDS | 35.0% | |
| !!! | ATCCACTTCTGTTTGGTTTT+GGG | - | chr3_3:1812490-1812509 | None:intergenic | 35.0% |
| !! | TATCCACTTCTGTTTGGTTT+TGG | - | chr3_3:1812491-1812510 | None:intergenic | 35.0% |
| !!! | CTTACTGCTTTTTCTGATTC+AGG | - | chr3_3:1812614-1812633 | None:intergenic | 35.0% |
| CTGAATCAGAAAAAGCAGTA+AGG | + | chr3_3:1812612-1812631 | Msa0437780:intron | 35.0% | |
| TAGCTCAGGGATTAAATTAC+AGG | + | chr3_3:1812815-1812834 | Msa0437780:intron | 35.0% | |
| TTATCAAGATAAAGCCGTGA+AGG | + | chr3_3:1812948-1812967 | Msa0437780:CDS | 35.0% | |
| ! | AGAGAGGTACATAACAGAAA+TGG | + | chr3_3:1812975-1812994 | Msa0437780:CDS | 35.0% |
| GATCATTCTTCAACTTCTCA+CGG | - | chr3_3:1813008-1813027 | None:intergenic | 35.0% | |
| !! | GAAGGAGAAAGATTTTAGTG+TGG | + | chr3_3:1813167-1813186 | Msa0437780:CDS | 35.0% |
| AAGAAATGTTAGCTAGGGAA+TGG | + | chr3_3:1813253-1813272 | Msa0437780:three_prime_UTR | 35.0% | |
| ! | CTGTGATTTGTGCTTAAAGT+AGG | - | chr3_3:1813350-1813369 | None:intergenic | 35.0% |
| ACAAATCACAGTGATCAACT+GGG | + | chr3_3:1813359-1813378 | Msa0437780:three_prime_UTR | 35.0% | |
| !! | TCAGTTTGAGGTGTTTGTTT+TGG | + | chr3_3:1813399-1813418 | Msa0437780:three_prime_UTR | 35.0% |
| GCTGAATATATGATCCTAAC+AGG | + | chr3_3:1813441-1813460 | Msa0437780:three_prime_UTR | 35.0% | |
| CCCTATCTACAAATACTGGA+TGG | + | chr3_3:1809125-1809144 | Msa0437780:five_prime_UTR | 40.0% | |
| TGGCGCAGGAAAAATACTAA+AGG | + | chr3_3:1809259-1809278 | Msa0437780:five_prime_UTR | 40.0% | |
| CTCAAAGCTGTCTCTTTCAT+GGG | - | chr3_3:1809341-1809360 | None:intergenic | 40.0% | |
| TAGGTGAAGGATATTCACCA+TGG | - | chr3_3:1809364-1809383 | None:intergenic | 40.0% | |
| TGGTGAATATCCTTCACCTA+TGG | + | chr3_3:1809364-1809383 | Msa0437780:CDS | 40.0% | |
| TCATATGTTGCCATAGGTGA+AGG | - | chr3_3:1809377-1809396 | None:intergenic | 40.0% | |
| TTCACCTATGGCAACATATG+AGG | + | chr3_3:1809376-1809395 | Msa0437780:CDS | 40.0% | |
| CAAGCTAAGTATGAAGAGCT+TGG | - | chr3_3:1809417-1809436 | None:intergenic | 40.0% | |
| CAAGCTCTTCATACTTAGCT+TGG | + | chr3_3:1809415-1809434 | Msa0437780:CDS | 40.0% | |
| TTGCAGGATTCCTGTTATTG+GGG | + | chr3_3:1809652-1809671 | Msa0437780:intron | 40.0% | |
| GAGAAGTCACTTCAACAAAG+AGG | - | chr3_3:1809700-1809719 | None:intergenic | 40.0% | |
| TTTGTTGAAGTGACTTCTCG+TGG | + | chr3_3:1809701-1809720 | Msa0437780:CDS | 40.0% | |
| ATTCACACAATGTTTGGCGT+CGG | - | chr3_3:1809788-1809807 | None:intergenic | 40.0% | |
| GTCCAAAATATAGGACACTG+AGG | + | chr3_3:1809825-1809844 | Msa0437780:intron | 40.0% | |
| ! | CAAATGCTTCTTTTGTGCTG+CGG | + | chr3_3:1810167-1810186 | Msa0437780:CDS | 40.0% |
| AACTGGACCAATACAACTTC+CGG | + | chr3_3:1810247-1810266 | Msa0437780:CDS | 40.0% | |
| GAACATACCGGAAGTTGTAT+TGG | - | chr3_3:1810257-1810276 | None:intergenic | 40.0% | |
| ACAACTTCCGGTATGTTCAT+TGG | + | chr3_3:1810259-1810278 | Msa0437780:intron | 40.0% | |
| AAAGCAAAGCAAAGACCTTC+AGG | - | chr3_3:1810471-1810490 | None:intergenic | 40.0% | |
| TTTAACCTGTCGGGATATTG+GGG | + | chr3_3:1810682-1810701 | Msa0437780:intron | 40.0% | |
| ATTAACAACAGTAGGGTAGG+GGG | - | chr3_3:1810756-1810775 | None:intergenic | 40.0% | |
| GGAGGATCAAGAAAAATAGC+GGG | - | chr3_3:1810907-1810926 | None:intergenic | 40.0% | |
| ! | GAGCTTACATTTAATGGGTG+GGG | + | chr3_3:1811351-1811370 | Msa0437780:intron | 40.0% |
| CAATCCATTGCAAAATCCGA+GGG | + | chr3_3:1811421-1811440 | Msa0437780:intron | 40.0% | |
| !! | GAGGGAGATGGTTTTTCAAT+AGG | + | chr3_3:1811439-1811458 | Msa0437780:intron | 40.0% |
| AACTTCCTTCTAAGCAGCTT+AGG | + | chr3_3:1811608-1811627 | Msa0437780:intron | 40.0% | |
| TTACACCTAAGCTGCTTAGA+AGG | - | chr3_3:1811616-1811635 | None:intergenic | 40.0% | |
| ! | ACTTTTGTCACCCTGACTAT+TGG | - | chr3_3:1811917-1811936 | None:intergenic | 40.0% |
| !! | ATTGGTTCGGAGAAACTCAA+AGG | + | chr3_3:1812320-1812339 | Msa0437780:CDS | 40.0% |
| TGTTGTTAGCAGGAACACTA+TGG | - | chr3_3:1812391-1812410 | None:intergenic | 40.0% | |
| CAATGGTCCTACTAATCTCT+CGG | - | chr3_3:1812571-1812590 | None:intergenic | 40.0% | |
| AGGTAAGAGCAGGATAGTTT+AGG | - | chr3_3:1812700-1812719 | None:intergenic | 40.0% | |
| CTATCCTGCTCTTACCTATT+TGG | + | chr3_3:1812703-1812722 | Msa0437780:intron | 40.0% | |
| TAGACCAAATAGGTAAGAGC+AGG | - | chr3_3:1812710-1812729 | None:intergenic | 40.0% | |
| AATGCATATCTGAGCTTCTG+CGG | - | chr3_3:1812867-1812886 | None:intergenic | 40.0% | |
| ! | AACATGTCAGTATCTGGTTC+AGG | - | chr3_3:1813069-1813088 | None:intergenic | 40.0% |
| GCATTCAACATGTCAGTATC+TGG | - | chr3_3:1813075-1813094 | None:intergenic | 40.0% | |
| TACTGACATGTTGAATGCTG+AGG | + | chr3_3:1813077-1813096 | Msa0437780:CDS | 40.0% | |
| CTATGAAGATGATAAGGCGA+AGG | + | chr3_3:1813149-1813168 | Msa0437780:CDS | 40.0% | |
| TGTGGATTCATTGCCTGTTA+TGG | + | chr3_3:1813185-1813204 | Msa0437780:CDS | 40.0% | |
| GTGGATTCATTGCCTGTTAT+GGG | + | chr3_3:1813186-1813205 | Msa0437780:CDS | 40.0% | |
| TGTTAGCTAGGGAATGGAAT+AGG | + | chr3_3:1813259-1813278 | Msa0437780:three_prime_UTR | 40.0% | |
| CACAAATCACAGTGATCAAC+TGG | + | chr3_3:1813358-1813377 | Msa0437780:three_prime_UTR | 40.0% | |
| ATCTGTTTCAGCATCCTGTT+AGG | - | chr3_3:1813458-1813477 | None:intergenic | 40.0% | |
| GCGCCACCATTAACAAGAAA+AGG | - | chr3_3:1809245-1809264 | None:intergenic | 45.0% | |
| ! | TTTCTTGTTAATGGTGGCGC+AGG | + | chr3_3:1809245-1809264 | Msa0437780:five_prime_UTR | 45.0% |
| GCTGTCTCTTTCATGGGTAA+TGG | - | chr3_3:1809335-1809354 | None:intergenic | 45.0% | |
| GCTCAAAGCTGTCTCTTTCA+TGG | - | chr3_3:1809342-1809361 | None:intergenic | 45.0% | |
| !! | AAAGAGACAGCTTTGAGCCA+TGG | + | chr3_3:1809344-1809363 | Msa0437780:CDS | 45.0% |
| ACCTATGGCAACATATGAGG+AGG | + | chr3_3:1809379-1809398 | Msa0437780:CDS | 45.0% | |
| ACCTCCTCATATGTTGCCAT+AGG | - | chr3_3:1809383-1809402 | None:intergenic | 45.0% | |
| TGCAGGATTCCTGTTATTGG+GGG | + | chr3_3:1809653-1809672 | Msa0437780:intron | 45.0% | |
| GATTCCTGTTATTGGGGGAA+GGG | + | chr3_3:1809658-1809677 | Msa0437780:CDS | 45.0% | |
| AATTCCCTTCCCCCAATAAC+AGG | - | chr3_3:1809665-1809684 | None:intergenic | 45.0% | |
| TGTTATTGGGGGAAGGGAAT+TGG | + | chr3_3:1809664-1809683 | Msa0437780:CDS | 45.0% | |
| TTGAAGTGACTTCTCGTGGA+GGG | + | chr3_3:1809705-1809724 | Msa0437780:CDS | 45.0% | |
| ! | CGCCTCAGTGTCCTATATTT+TGG | - | chr3_3:1809830-1809849 | None:intergenic | 45.0% |
| ! | GAAGCATTTGTAGCCGTTGA+TGG | - | chr3_3:1810157-1810176 | None:intergenic | 45.0% |
| !! | GAAAACTGCATCTTTGGAGC+AGG | - | chr3_3:1810387-1810406 | None:intergenic | 45.0% |
| AAGACAGCTGGTTGAACTTG+TGG | - | chr3_3:1810420-1810439 | None:intergenic | 45.0% | |
| GGGGTGTAGTTGCAATTGTT+TGG | + | chr3_3:1810591-1810610 | Msa0437780:intron | 45.0% | |
| TTAACCTGTCGGGATATTGG+GGG | + | chr3_3:1810683-1810702 | Msa0437780:intron | 45.0% | |
| GCAATCCATTGCAAAATCCG+AGG | + | chr3_3:1811420-1811439 | Msa0437780:intron | 45.0% | |
| ! | ATCTCCCTCGGATTTTGCAA+TGG | - | chr3_3:1811428-1811447 | None:intergenic | 45.0% |
| ATTGCAAAATCCGAGGGAGA+TGG | + | chr3_3:1811427-1811446 | Msa0437780:intron | 45.0% | |
| TCAACACCACCTAGTGGTAT+AGG | + | chr3_3:1812030-1812049 | Msa0437780:intron | 45.0% | |
| CAACACCACCTAGTGGTATA+GGG | + | chr3_3:1812031-1812050 | Msa0437780:intron | 45.0% | |
| TCAAACCCTATACCACTAGG+TGG | - | chr3_3:1812039-1812058 | None:intergenic | 45.0% | |
| TTCTCTTGTGCTCTCAGCAA+TGG | + | chr3_3:1812220-1812239 | Msa0437780:intron | 45.0% | |
| TCTCTTGTGCTCTCAGCAAT+GGG | + | chr3_3:1812221-1812240 | Msa0437780:intron | 45.0% | |
| CTCAGCAATGGGATCATCTT+CGG | + | chr3_3:1812232-1812251 | Msa0437780:intron | 45.0% | |
| GTTAGCAGGAACACTATGGT+GGG | - | chr3_3:1812387-1812406 | None:intergenic | 45.0% | |
| TGTTAGCAGGAACACTATGG+TGG | - | chr3_3:1812388-1812407 | None:intergenic | 45.0% | |
| TCTCTGATTTCTTCCTGCGT+CGG | - | chr3_3:1812445-1812464 | None:intergenic | 45.0% | |
| CACCCAAAACCAAACAGAAG+TGG | + | chr3_3:1812485-1812504 | Msa0437780:CDS | 45.0% | |
| TCTTTGCAGAACAGCATCCA+AGG | + | chr3_3:1812519-1812538 | Msa0437780:CDS | 45.0% | |
| CGAGAGATTAGTAGGACCAT+TGG | + | chr3_3:1812569-1812588 | Msa0437780:CDS | 45.0% | |
| CTTGTTCCAGAGTTCACCAA+TGG | - | chr3_3:1812588-1812607 | None:intergenic | 45.0% | |
| GAGCAGGATAGTTTAGGAAC+TGG | - | chr3_3:1812694-1812713 | None:intergenic | 45.0% | |
| GTACCTCTCTTTGTCCTTCA+CGG | - | chr3_3:1812965-1812984 | None:intergenic | 45.0% | |
| TCAGGAAATCGCTGTTGAAG+TGG | - | chr3_3:1813051-1813070 | None:intergenic | 45.0% | |
| TCATTGCCTGTTATGGGAGT+TGG | + | chr3_3:1813192-1813211 | Msa0437780:CDS | 45.0% | |
| ! | CACAGTGATCAACTGGGTTT+TGG | + | chr3_3:1813365-1813384 | Msa0437780:three_prime_UTR | 45.0% |
| TTCCGCGTCTGATCTCTAAA+TGG | + | chr3_3:1813478-1813497 | Msa0437780:three_prime_UTR | 45.0% | |
| GACCATTTAGAGATCAGACG+CGG | - | chr3_3:1813483-1813502 | None:intergenic | 45.0% | |
| !! | TAAATGAAAAATTATAATAA+TGG | + | chr3_3:1811564-1811583 | Msa0437780:intron | 5.0% |
| GAGAAGCTCCACACTCTCAT+GGG | + | chr3_3:1809437-1809456 | Msa0437780:CDS | 50.0% | |
| CATGGGCACCAAGTTCATGT+AGG | + | chr3_3:1809454-1809473 | Msa0437780:intron | 50.0% | |
| GGATTCCTGTTATTGGGGGA+AGG | + | chr3_3:1809657-1809676 | Msa0437780:intron | 50.0% | |
| GTTGAAGTGACTTCTCGTGG+AGG | + | chr3_3:1809704-1809723 | Msa0437780:CDS | 50.0% | |
| GTTAATTCTGCTCCGCCTGA+AGG | + | chr3_3:1810453-1810472 | Msa0437780:CDS | 50.0% | |
| GCAAAGCAAAGACCTTCAGG+CGG | - | chr3_3:1810468-1810487 | None:intergenic | 50.0% | |
| TAACCTGTCGGGATATTGGG+GGG | + | chr3_3:1810684-1810703 | Msa0437780:intron | 50.0% | |
| TTGCAGTCAACACCACCTAG+TGG | + | chr3_3:1812024-1812043 | Msa0437780:intron | 50.0% | |
| ATCATCTTCGGCAGGATCTC+AGG | + | chr3_3:1812244-1812263 | Msa0437780:CDS | 50.0% | |
| AGGTTGTCGGGGTCATTGAT+GGG | + | chr3_3:1812264-1812283 | Msa0437780:CDS | 50.0% | |
| !!! | CTGTTTGGTTTTGGGTGAGC+AGG | - | chr3_3:1812482-1812501 | None:intergenic | 50.0% |
| !! | CGGTGAAGAGGTTTTAGCCT+TGG | - | chr3_3:1812539-1812558 | None:intergenic | 50.0% |
| AGGCTAAAACCTCTTCACCG+AGG | + | chr3_3:1812539-1812558 | Msa0437780:CDS | 50.0% | |
| GGCTAAAACCTCTTCACCGA+GGG | + | chr3_3:1812540-1812559 | Msa0437780:CDS | 50.0% | |
| AAAACCTCTTCACCGAGGGA+AGG | + | chr3_3:1812544-1812563 | Msa0437780:CDS | 50.0% | |
| TAATCTCTCGGTCCTTCCCT+CGG | - | chr3_3:1812559-1812578 | None:intergenic | 50.0% | |
| GGAAGGACCGAGAGATTAGT+AGG | + | chr3_3:1812561-1812580 | Msa0437780:CDS | 50.0% | |
| GTAGGACCATTGGTGAACTC+TGG | + | chr3_3:1812579-1812598 | Msa0437780:CDS | 50.0% | |
| AAGCCGTGAAGGACAAAGAG+AGG | + | chr3_3:1812959-1812978 | Msa0437780:CDS | 50.0% | |
| GGCAGACTCTCTTCAAACTC+CGG | + | chr3_3:1813098-1813117 | Msa0437780:CDS | 50.0% | |
| TCAGCACCAACTCCCATAAC+AGG | - | chr3_3:1813201-1813220 | None:intergenic | 50.0% | |
| !! | GCTGAGACTTTGAGTTGCAG+TGG | + | chr3_3:1813321-1813340 | Msa0437780:three_prime_UTR | 50.0% |
| GGAGAAGCTCCACACTCTCA+TGG | + | chr3_3:1809436-1809455 | Msa0437780:CDS | 55.0% | |
| !! | ACTTGGTGCCCATGAGAGTG+TGG | - | chr3_3:1809448-1809467 | None:intergenic | 55.0% |
| CCAGGGAGCCTACATGAACT+TGG | - | chr3_3:1809465-1809484 | None:intergenic | 55.0% | |
| CCAAGTTCATGTAGGCTCCC+TGG | + | chr3_3:1809462-1809481 | Msa0437780:intron | 55.0% | |
| !! | GCATCTTTGGAGCAGGAGCT+GGG | - | chr3_3:1810380-1810399 | None:intergenic | 55.0% |
| !! | TGCATCTTTGGAGCAGGAGC+TGG | - | chr3_3:1810381-1810400 | None:intergenic | 55.0% |
| GCAATGGGATCATCTTCGGC+AGG | + | chr3_3:1812236-1812255 | Msa0437780:intron | 55.0% | |
| ! | TCGGCAGGATCTCAGGTTGT+CGG | + | chr3_3:1812251-1812270 | Msa0437780:CDS | 55.0% |
| CAGGTTGTCGGGGTCATTGA+TGG | + | chr3_3:1812263-1812282 | Msa0437780:CDS | 55.0% | |
| ! | GCTGGCAGCACAGGATTTTG+TGG | - | chr3_3:1812362-1812381 | None:intergenic | 55.0% |
| ! | GGAACACTATGGTGGGATGC+TGG | - | chr3_3:1812380-1812399 | None:intergenic | 55.0% |
| ! | GCGGTCACGTTGTTGTTAGC+AGG | - | chr3_3:1812401-1812420 | None:intergenic | 55.0% |
| AACAACGTGACCGCCTCTGT+CGG | + | chr3_3:1812407-1812426 | Msa0437780:CDS | 55.0% | |
| CGGTGTGTAGACACACAGTC+AGG | - | chr3_3:1812847-1812866 | None:intergenic | 55.0% | |
| CCGTCTGAACTACTCTGCTC+CGG | - | chr3_3:1813120-1813139 | None:intergenic | 55.0% | |
| CCGGAGCAGAGTAGTTCAGA+CGG | + | chr3_3:1813117-1813136 | Msa0437780:CDS | 55.0% | |
| !! | CTTTGGAGCAGGAGCTGGGA+TGG | - | chr3_3:1810376-1810395 | None:intergenic | 60.0% |
| TCACCCCCCAATATCCCGAC+AGG | - | chr3_3:1810690-1810709 | None:intergenic | 60.0% | |
| ! | CGGCAGGATCTCAGGTTGTC+GGG | + | chr3_3:1812252-1812271 | Msa0437780:CDS | 60.0% |
| ! | GGCAGGATCTCAGGTTGTCG+GGG | + | chr3_3:1812253-1812272 | Msa0437780:CDS | 60.0% |
| ACGATGGACACCGACAGAGG+CGG | - | chr3_3:1812420-1812439 | None:intergenic | 60.0% | |
| TGGTGGGATGCTGGCAGCAC+AGG | - | chr3_3:1812371-1812390 | None:intergenic | 65.0% | |
| GCGACGATGGACACCGACAG+AGG | - | chr3_3:1812423-1812442 | None:intergenic | 65.0% | |
| ! | TCTTCCTGCGTCGGCGACGA+TGG | - | chr3_3:1812436-1812455 | None:intergenic | 65.0% |
| CGGTCCTTCCCTCGGTGAAG+AGG | - | chr3_3:1812551-1812570 | None:intergenic | 65.0% | |
| GTGTCCATCGTCGCCGACGC+AGG | + | chr3_3:1812429-1812448 | Msa0437780:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1809113 | 1813580 | 1809113 | ID=Msa0437780;Name=Msa0437780 |
| chr3_3 | mRNA | 1809113 | 1813580 | 1809113 | ID=Msa0437780-mRNA-1;Parent=Msa0437780;Name=Msa0437780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=189|1|1|1|1|0.83|6|353|402 |
| chr3_3 | exon | 1809113 | 1809471 | 1809113 | ID=Msa0437780-mRNA-1:exon:330;Parent=Msa0437780-mRNA-1 |
| chr3_3 | exon | 1809658 | 1809736 | 1809658 | ID=Msa0437780-mRNA-1:exon:331;Parent=Msa0437780-mRNA-1 |
| chr3_3 | exon | 1810106 | 1810268 | 1810106 | ID=Msa0437780-mRNA-1:exon:332;Parent=Msa0437780-mRNA-1 |
| chr3_3 | exon | 1810352 | 1810474 | 1810352 | ID=Msa0437780-mRNA-1:exon:333;Parent=Msa0437780-mRNA-1 |
| chr3_3 | exon | 1812237 | 1812628 | 1812237 | ID=Msa0437780-mRNA-1:exon:334;Parent=Msa0437780-mRNA-1 |
| chr3_3 | exon | 1812946 | 1813580 | 1812946 | ID=Msa0437780-mRNA-1:exon:335;Parent=Msa0437780-mRNA-1 |
| chr3_3 | five_prime_UTR | 1809113 | 1809301 | 1809113 | ID=Msa0437780-mRNA-1:five_prime_utr;Parent=Msa0437780-mRNA-1 |
| chr3_3 | CDS | 1809302 | 1809471 | 1809302 | ID=Msa0437780-mRNA-1:cds;Parent=Msa0437780-mRNA-1 |
| chr3_3 | CDS | 1809658 | 1809736 | 1809658 | ID=Msa0437780-mRNA-1:cds;Parent=Msa0437780-mRNA-1 |
| chr3_3 | CDS | 1810106 | 1810268 | 1810106 | ID=Msa0437780-mRNA-1:cds;Parent=Msa0437780-mRNA-1 |
| chr3_3 | CDS | 1810352 | 1810474 | 1810352 | ID=Msa0437780-mRNA-1:cds;Parent=Msa0437780-mRNA-1 |
| chr3_3 | CDS | 1812237 | 1812628 | 1812237 | ID=Msa0437780-mRNA-1:cds;Parent=Msa0437780-mRNA-1 |
| chr3_3 | CDS | 1812946 | 1813227 | 1812946 | ID=Msa0437780-mRNA-1:cds;Parent=Msa0437780-mRNA-1 |
| chr3_3 | three_prime_UTR | 1813228 | 1813580 | 1813228 | ID=Msa0437780-mRNA-1:three_prime_utr;Parent=Msa0437780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
