AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258890 MtrunA17_Chr4g0058091 99.027 514 5 0 1 514 1 514 0.0 1046
Msa1258890 MtrunA17_Chr3g0116561 74.409 508 130 0 7 514 2 509 0.0 785
Msa1258890 MtrunA17_Chr4g0001841 86.296 270 13 1 30 299 20 265 2.74e-161 458
Msa1258890 MtrunA17_Chr4g0001851 84.106 151 8 1 345 495 1 135 6.66e-84 256
Msa1258890 MtrunA17_Chr8g0383711 27.397 292 200 6 226 513 14 297 1.60e-31 123
Msa1258890 MtrunA17_Chr4g0067151 29.804 255 167 6 228 475 76 325 1.11e-29 119
Msa1258890 MtrunA17_Chr4g0067151 26.792 265 175 7 263 513 18 277 3.43e-19 88.6
Msa1258890 MtrunA17_Chr7g0253861 27.206 272 193 2 226 492 51 322 9.52e-28 114
Msa1258890 MtrunA17_Chr7g0253861 27.143 210 138 6 310 513 51 251 4.80e-15 76.6
Msa1258890 MtrunA17_Chr1g0185891 25.962 312 206 8 218 513 281 583 3.01e-24 106
Msa1258890 MtrunA17_Chr1g0185891 33.019 106 65 3 289 392 272 373 4.89e-12 68.6
Msa1258890 MtrunA17_Chr4g0057141 25.962 312 206 8 218 513 342 644 3.22e-24 106
Msa1258890 MtrunA17_Chr4g0057141 33.019 106 65 3 289 392 333 434 6.38e-12 68.2
Msa1258890 MtrunA17_Chr8g0392701 26.948 308 176 9 241 513 27 320 1.95e-22 98.2
Msa1258890 MtrunA17_Chr8g0392701 25.818 275 172 8 225 475 58 324 5.94e-17 82.0
Msa1258890 MtrunA17_Chr8g0392701 27.027 222 140 7 306 513 7 220 1.42e-13 72.0
Msa1258890 MtrunA17_Chr1g0185501 26.073 303 214 6 219 513 12 312 2.90e-22 97.4
Msa1258890 MtrunA17_Chr2g0281451 26.906 223 157 3 245 466 31 248 1.48e-20 95.9
Msa1258890 MtrunA17_Chr2g0281451 26.974 152 109 2 228 378 98 248 2.60e-15 79.3
Msa1258890 MtrunA17_Chr2g0281451 23.684 228 164 4 285 509 29 249 1.35e-14 77.0
Msa1258890 MtrunA17_Chr6g0448921 27.049 244 168 5 224 462 7 245 1.63e-20 95.5
Msa1258890 MtrunA17_Chr6g0448921 24.887 221 156 4 284 501 29 242 3.36e-16 82.0
Msa1258890 MtrunA17_Chr6g0448921 24.103 195 146 2 221 414 50 243 1.06e-12 70.9
Msa1258890 MtrunA17_Chr6g0448921 21.154 208 153 4 310 513 12 212 2.12e-11 66.6
Msa1258890 MtrunA17_Chr4g0059031 26.394 269 175 8 263 514 350 612 1.14e-17 86.7
Msa1258890 MtrunA17_Chr4g0059031 31.351 185 116 5 253 427 41 224 2.26e-16 82.4
Msa1258890 MtrunA17_Chr8g0390861 25.322 233 163 4 283 513 880 1103 7.18e-17 84.3
Msa1258890 MtrunA17_Chr8g0390861 26.119 268 163 13 226 471 949 1203 4.81e-13 72.0
Msa1258890 MtrunA17_Chr1g0200901 24.912 285 199 7 225 504 118 392 7.44e-17 82.8
Msa1258890 MtrunA17_Chr1g0200901 24.306 288 155 8 224 498 74 311 4.44e-11 64.7
Msa1258890 MtrunA17_Chr2g0295791 22.222 261 185 7 224 477 163 412 2.88e-16 81.3
Msa1258890 MtrunA17_Chr8g0352821 22.635 296 181 5 221 514 216 465 1.37e-15 79.7
Msa1258890 MtrunA17_Chr3g0136971 27.815 302 188 11 218 513 337 614 4.14e-15 78.2
Msa1258890 MtrunA17_Chr3g0136971 21.951 205 158 2 226 429 415 618 9.26e-12 67.8
Msa1258890 MtrunA17_Chr1g0176241 27.660 141 101 1 202 342 342 481 1.01e-14 76.6
Msa1258890 MtrunA17_Chr1g0176241 25.630 238 146 7 245 471 264 481 1.16e-11 67.0
Msa1258890 MtrunA17_Chr4g0053651 23.000 300 172 6 223 512 323 573 1.83e-14 75.9
Msa1258890 MtrunA17_Chr1g0172501 22.807 285 210 5 232 514 277 553 1.92e-14 75.9
Msa1258890 MtrunA17_Chr3g0093681 22.807 285 210 5 232 514 277 553 2.21e-14 75.9
Msa1258890 MtrunA17_Chr3g0095501 24.522 314 209 11 215 513 255 555 8.42e-14 73.9
Msa1258890 MtrunA17_Chr5g0401661 23.381 278 195 6 245 512 411 680 5.43e-13 71.6
Msa1258890 MtrunA17_Chr5g0401671 24.172 302 166 7 223 512 340 590 7.84e-13 70.9
Msa1258890 MtrunA17_Chr2g0284241 23.693 287 193 8 245 514 23 300 1.47e-12 68.9
Msa1258890 MtrunA17_Chr1g0162961 23.113 212 141 3 240 429 86 297 1.96e-12 69.3
Msa1258890 MtrunA17_Chr4g0070791 24.812 266 169 8 245 489 33 288 6.03e-12 67.0
Msa1258890 MtrunA17_Chr3g0099061 22.422 223 144 7 280 482 222 435 6.51e-12 67.8
Msa1258890 MtrunA17_Chr3g0099061 27.108 166 107 4 328 483 227 388 9.02e-12 67.4
Msa1258890 MtrunA17_Chr7g0246741 25.243 206 146 4 281 483 378 578 8.65e-12 67.8
Msa1258890 MtrunA17_Chr6g0449701 23.741 278 172 11 274 513 110 385 9.33e-12 67.4
Msa1258890 MtrunA17_Chr2g0292301 23.377 231 162 5 245 473 225 442 1.10e-11 67.0
Msa1258890 MtrunA17_Chr2g0294611 24.188 277 161 9 225 471 239 496 1.29e-11 67.8
Msa1258890 MtrunA17_Chr4g0035611 26.394 269 166 12 225 485 46 290 1.88e-11 67.0
Msa1258890 MtrunA17_Chr1g0168391 25.000 204 147 4 232 431 226 427 4.07e-11 65.5
Msa1258890 MtrunA17_Chr1g0183051 24.127 315 207 14 217 513 203 503 5.83e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258890 AT5G50230.1 71.203 507 146 0 8 514 3 509 0.0 784
Msa1258890 AT5G64730.1 26.490 302 216 4 213 513 1 297 4.74e-30 119
Msa1258890 AT3G49660.1 28.682 258 168 5 226 475 67 316 1.39e-29 119
Msa1258890 AT3G49660.1 25.581 301 205 6 226 514 20 313 1.38e-27 113
Msa1258890 AT2G43770.1 26.838 272 194 2 226 492 49 320 2.02e-28 116
Msa1258890 AT2G43770.1 26.923 208 141 5 310 513 49 249 4.68e-15 77.0
Msa1258890 AT1G48630.1 26.403 303 185 8 241 513 27 321 2.66e-22 98.2
Msa1258890 AT1G48630.1 26.087 276 171 8 225 475 58 325 1.49e-17 84.3
Msa1258890 AT1G48630.1 25.455 220 146 7 306 513 7 220 1.44e-12 69.3
Msa1258890 AT3G18130.1 26.733 303 184 8 241 513 27 321 3.10e-22 98.2
Msa1258890 AT3G18130.1 26.087 276 171 8 225 475 58 325 1.68e-17 84.0
Msa1258890 AT3G18130.1 25.000 220 147 7 306 513 7 220 1.12e-11 66.6
Msa1258890 AT1G10580.1 24.038 312 212 8 218 513 270 572 3.48e-21 97.4
Msa1258890 AT3G16650.1 25.191 262 175 8 224 477 163 411 7.61e-21 95.9
Msa1258890 AT5G23430.3 28.111 217 150 4 224 435 7 222 1.17e-20 96.3
Msa1258890 AT5G23430.3 25.229 218 153 4 285 499 30 240 1.81e-15 80.1
Msa1258890 AT5G23430.3 24.103 195 146 2 221 414 50 243 9.81e-12 68.2
Msa1258890 AT5G23430.2 28.111 217 150 4 224 435 7 222 1.17e-20 96.3
Msa1258890 AT5G23430.2 25.229 218 153 4 285 499 30 240 1.81e-15 80.1
Msa1258890 AT5G23430.2 24.103 195 146 2 221 414 50 243 9.81e-12 68.2
Msa1258890 AT5G23430.1 28.111 217 150 4 224 435 7 222 1.22e-20 96.3
Msa1258890 AT5G23430.1 25.229 218 153 4 285 499 30 240 1.86e-15 80.1
Msa1258890 AT5G23430.1 24.103 195 146 2 221 414 50 243 1.02e-11 68.2
Msa1258890 AT1G11160.2 27.165 254 174 6 224 471 6 254 1.26e-20 96.3
Msa1258890 AT1G11160.2 23.348 227 168 3 284 509 28 249 7.02e-13 72.0
Msa1258890 AT1G11160.1 27.165 254 174 6 224 471 6 254 1.34e-20 96.3
Msa1258890 AT1G11160.1 23.348 227 168 3 284 509 28 249 7.40e-13 72.0
Msa1258890 AT1G18080.1 25.484 310 180 9 241 513 27 322 1.67e-20 93.2
Msa1258890 AT1G18080.1 28.440 218 143 6 306 513 7 221 5.10e-15 76.6
Msa1258890 AT1G18080.1 23.827 277 177 8 225 475 58 326 2.43e-14 74.7
Msa1258890 AT1G11160.4 27.165 254 174 6 224 471 6 254 1.78e-20 95.9
Msa1258890 AT1G11160.4 23.348 227 168 3 284 509 28 249 9.53e-13 71.6
Msa1258890 AT5G08390.1 28.571 217 149 4 224 435 7 222 2.85e-20 95.1
Msa1258890 AT5G08390.1 24.074 216 158 3 285 499 30 240 6.70e-15 78.2
Msa1258890 AT5G08390.1 22.564 195 149 2 221 414 50 243 4.69e-11 65.9
Msa1258890 AT5G08390.1 25.974 154 104 3 226 374 97 245 6.92e-11 65.5
Msa1258890 AT4G15900.1 23.970 267 173 9 224 477 169 418 3.14e-19 90.9
Msa1258890 AT4G02730.1 25.704 284 202 6 214 490 23 304 3.59e-19 89.4
Msa1258890 AT4G02730.1 21.654 254 186 7 267 513 38 285 1.77e-13 72.0
Msa1258890 AT1G04510.1 26.509 381 234 13 58 431 87 428 1.57e-18 89.0
Msa1258890 AT1G04510.2 26.509 381 234 13 58 431 87 428 1.57e-18 89.0
Msa1258890 AT1G61210.3 26.378 254 176 6 224 472 6 253 5.33e-18 88.2
Msa1258890 AT1G61210.3 24.324 222 156 5 284 501 28 241 1.42e-12 70.9
Msa1258890 AT5G13480.2 23.469 294 179 4 221 513 167 415 6.10e-18 87.4
Msa1258890 AT5G13480.3 23.469 294 179 4 221 513 144 392 6.34e-18 87.4
Msa1258890 AT5G13480.4 23.469 294 179 4 221 513 144 392 8.93e-18 87.0
Msa1258890 AT1G61210.2 26.872 227 160 4 224 445 6 231 9.21e-18 87.4
Msa1258890 AT1G61210.2 24.324 222 156 5 284 501 28 241 2.61e-12 70.1
Msa1258890 AT1G61210.2 25.157 159 116 3 226 383 96 252 1.04e-11 68.2
Msa1258890 AT5G13480.1 23.469 294 179 4 221 513 156 404 9.77e-18 87.0
Msa1258890 AT1G61210.1 26.872 227 160 4 224 445 6 231 9.97e-18 87.4
Msa1258890 AT1G61210.1 24.324 222 156 5 284 501 28 241 2.68e-12 70.1
Msa1258890 AT1G61210.1 25.157 159 116 3 226 383 96 252 1.17e-11 68.2
Msa1258890 AT5G52820.1 22.849 337 214 11 219 513 97 429 1.90e-17 85.5
Msa1258890 AT5G52820.1 26.816 179 111 3 164 342 313 471 1.88e-14 76.3
Msa1258890 AT2G33340.2 23.758 463 294 16 58 507 87 503 2.34e-16 82.4
Msa1258890 AT2G33340.1 23.758 463 294 16 58 507 87 503 2.34e-16 82.4
Msa1258890 AT2G33340.3 24.011 379 243 11 58 430 87 426 4.28e-16 81.3
Msa1258890 AT5G16750.1 26.038 265 177 6 264 513 350 610 4.55e-16 82.0
Msa1258890 AT5G16750.1 26.512 215 149 5 254 461 42 254 4.58e-15 79.0
Msa1258890 AT5G16750.1 23.443 273 175 8 221 471 392 652 2.36e-11 67.0
Msa1258890 AT3G27640.1 24.911 281 169 8 274 513 130 409 1.35e-15 80.1
Msa1258890 AT3G27640.2 24.911 281 169 8 274 513 111 390 1.43e-15 79.7
Msa1258890 AT5G43920.1 25.806 310 208 11 218 513 212 513 2.11e-15 79.3
Msa1258890 AT1G11160.3 26.087 207 146 4 267 471 11 212 3.04e-15 79.3
Msa1258890 AT1G11160.3 28.387 155 107 3 226 378 54 206 3.91e-14 75.9
Msa1258890 AT1G11160.3 25.123 203 146 3 308 509 10 207 1.86e-12 70.5
Msa1258890 AT1G49040.1 26.937 271 171 12 241 498 866 1122 3.16e-15 79.3
Msa1258890 AT1G49040.1 24.481 241 155 7 283 513 866 1089 6.11e-14 75.5
Msa1258890 AT1G49040.1 24.862 181 125 6 233 409 944 1117 1.38e-12 71.2
Msa1258890 AT3G18140.1 24.373 279 197 7 245 514 8 281 1.01e-14 75.5
Msa1258890 AT3G18140.1 25.000 184 122 5 235 406 124 303 7.88e-11 63.5
Msa1258890 AT5G67320.1 23.264 288 162 5 226 503 361 599 1.20e-14 77.0
Msa1258890 AT4G03020.1 26.104 249 164 6 275 513 232 470 1.47e-14 76.6
Msa1258890 AT4G03020.2 26.104 249 164 6 275 513 232 470 1.47e-14 76.6
Msa1258890 AT4G03020.3 26.104 249 164 6 275 513 232 470 1.47e-14 76.6
Msa1258890 AT3G49180.1 24.645 211 142 3 243 436 91 301 7.25e-14 73.9
Msa1258890 AT5G08560.1 23.944 284 164 10 278 513 280 559 1.01e-13 74.3
Msa1258890 AT5G08560.2 23.944 284 164 10 278 513 280 559 1.01e-13 74.3
Msa1258890 AT5G08560.3 23.944 284 164 10 278 513 280 559 1.01e-13 74.3
Msa1258890 AT5G25150.1 26.367 311 177 11 218 513 340 613 1.60e-13 73.6
Msa1258890 AT5G25150.1 22.439 205 157 2 226 429 414 617 6.13e-11 65.5
Msa1258890 AT5G25150.2 26.367 311 177 11 218 513 340 613 1.62e-13 73.6
Msa1258890 AT5G25150.2 22.439 205 157 2 226 429 414 617 6.60e-11 65.5
Msa1258890 AT2G47410.4 28.249 177 109 3 225 383 49 225 1.94e-13 73.9
Msa1258890 AT2G47410.1 28.249 177 109 3 225 383 231 407 1.97e-13 73.9
Msa1258890 AT2G47410.2 28.249 177 109 3 225 383 230 406 2.11e-13 73.9
Msa1258890 AT2G21390.1 24.000 275 172 7 225 468 46 314 7.91e-13 72.0
Msa1258890 AT2G47410.6 26.768 198 127 3 225 420 49 230 1.09e-12 71.6
Msa1258890 AT2G47410.3 26.768 198 127 3 225 420 49 230 1.09e-12 71.6
Msa1258890 AT2G16405.1 23.308 266 182 7 268 513 212 475 1.18e-12 70.5
Msa1258890 AT2G41500.1 23.140 242 174 6 277 514 303 536 1.25e-12 70.5
Msa1258890 AT2G41500.1 23.320 253 182 6 226 474 294 538 1.73e-12 70.1
Msa1258890 AT2G41500.2 23.140 242 174 6 277 514 303 536 1.25e-12 70.5
Msa1258890 AT2G41500.2 23.320 253 182 6 226 474 294 538 1.73e-12 70.1
Msa1258890 AT2G47410.5 26.768 198 127 3 225 420 231 412 1.27e-12 71.2
Msa1258890 AT4G29830.1 23.810 294 195 7 227 498 11 297 1.33e-12 69.3
Msa1258890 AT2G22040.1 23.693 287 191 9 245 514 13 288 1.75e-12 68.9
Msa1258890 AT2G22040.1 25.134 187 125 4 235 409 130 313 1.91e-12 68.6
Msa1258890 AT1G71840.1 23.841 302 208 10 224 513 64 355 2.70e-12 68.9
Msa1258890 AT3G15610.1 23.810 273 195 7 245 513 34 297 3.83e-12 68.2
Msa1258890 AT1G73720.1 24.848 165 111 3 328 483 226 386 7.78e-12 68.2
Msa1258890 AT1G73720.1 22.791 215 152 6 280 482 221 433 1.60e-11 67.0
Msa1258890 AT5G49430.2 26.570 207 128 4 225 429 240 424 3.69e-11 66.6
Msa1258890 AT5G49430.1 26.570 207 128 4 225 429 240 424 3.69e-11 66.6
Msa1258890 AT1G62020.1 22.909 275 175 7 225 468 46 314 4.58e-11 66.2
Msa1258890 AT2G26490.1 26.820 261 157 13 244 491 146 385 7.04e-11 64.7
Msa1258890 AT1G52730.1 22.993 274 196 8 245 513 34 297 8.61e-11 63.9
Msa1258890 AT1G52730.2 22.993 274 196 8 245 513 34 297 8.61e-11 63.9
Msa1258890 AT5G14530.1 22.727 308 206 10 200 495 8 295 8.75e-11 63.9

Find 132 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTAACTTGATTGAATT+AGG 0.175844 8_2:+60211356 None:intergenic
TTAACAGAGTGGCTTCTAAT+TGG 0.280252 8_2:-60208357 Msa1258890:CDS
TTGTACGTGGGACCTATTTC+CGG 0.282993 8_2:-60211425 Msa1258890:five_prime_UTR
TCCTTAAGTTCAAGTCTTAC+TGG 0.289367 8_2:-60208889 Msa1258890:CDS
ACCATTGTTGTTATTGTGTT+TGG 0.297478 8_2:+60211322 None:intergenic
GATTGTATTATACCTCATTT+AGG 0.316444 8_2:+60209998 None:intergenic
ACGACCGTACTATAAAAGTT+TGG 0.316749 8_2:-60208672 Msa1258890:CDS
TCACTAACTTGATTGAATTA+GGG 0.332695 8_2:+60211357 None:intergenic
CGAGTCCGTCATACCCTTAC+TGG 0.338442 8_2:-60208763 Msa1258890:CDS
CTCTCAATTAAAGACAGATT+TGG 0.339284 8_2:-60210175 Msa1258890:CDS
TCAATCGCAACTTGTTCTTT+CGG 0.343457 8_2:+60211286 None:intergenic
TTGTTTCAATCTGGTCATAA+TGG 0.359886 8_2:-60208150 Msa1258890:exon
CTTCTGTTCTCTGTTGTAGC+TGG 0.366870 8_2:-60208216 Msa1258890:CDS
GCAAAGAGCATTGCAGTTGC+TGG 0.371762 8_2:+60208609 None:intergenic
TCAATATCCCTTTCTCGAAA+TGG 0.373411 8_2:-60208469 Msa1258890:CDS
ATAACAACAATGGTGAAAAC+TGG 0.380581 8_2:-60211313 Msa1258890:exon
TCGATGGTAATCTTCGGTTA+TGG 0.380769 8_2:-60208549 Msa1258890:CDS
TTCAGAACTAAAAGCACAAC+TGG 0.383721 8_2:-60210112 Msa1258890:CDS
ATCGACATGTCCAGAAAATA+TGG 0.387589 8_2:+60208567 None:intergenic
CGACCGTACTATAAAAGTTT+GGG 0.390463 8_2:-60208671 Msa1258890:CDS
TGGCTGCCTTGGCTCAGTAT+TGG 0.392787 8_2:-60208869 Msa1258890:CDS
GGTATGGGATTGTTTCTATC+TGG 0.393142 8_2:-60208083 Msa1258890:three_prime_UTR
AATTCTAGTAGATTGATTAC+TGG 0.396540 8_2:-60208955 Msa1258890:CDS
GAAAGAGAAAGCAGAGAACT+TGG 0.396574 8_2:-60210655 Msa1258890:CDS
TCAAGTCTTACTGGCTGCCT+TGG 0.397402 8_2:-60208880 Msa1258890:CDS
TTCTAGACCCATCGTTTCTC+AGG 0.404660 8_2:-60211182 Msa1258890:intron
AGAATTGTACTCGAACAATA+AGG 0.407571 8_2:+60208972 None:intergenic
CAATATTTCCATTTCGAGAA+AGG 0.408563 8_2:+60208461 None:intergenic
CTGATGGATCTGTGCATATA+TGG 0.411583 8_2:-60208285 Msa1258890:CDS
GGAATGGAATTGTTTCAATC+TGG 0.416661 8_2:-60208159 Msa1258890:CDS
CGATGGTAATCTTCGGTTAT+GGG 0.416788 8_2:-60208548 Msa1258890:CDS
TTAAGAAAATCTAACAGGTA+TGG 0.435974 8_2:-60208099 Msa1258890:three_prime_UTR
CTTTATCTGTGTGTCCAGTA+AGG 0.436242 8_2:+60208749 None:intergenic
AAGACATGGTTCAGCGGCTA+AGG 0.439770 8_2:-60209137 Msa1258890:CDS
ATTCCTGTCAGCTGAAGCTA+GGG 0.443091 8_2:+60208177 None:intergenic
AATATTTCCATTTCGAGAAA+GGG 0.445723 8_2:+60208462 None:intergenic
CAGTCTTACTTAATATCTAA+AGG 0.445934 8_2:-60207905 Msa1258890:three_prime_UTR
TAAGAAAATCTAACAGGTAT+GGG 0.449668 8_2:-60208098 Msa1258890:three_prime_UTR
TTTGTTTGATGTGCGATCTC+TGG 0.451133 8_2:-60208407 Msa1258890:CDS
GCCAGTAAGACTTGAACTTA+AGG 0.454568 8_2:+60208888 None:intergenic
TTAGTTTGGCCGCTGTTCCT+AGG 0.455437 8_2:+60207783 None:intergenic
TCCCTTCCAATTGCAAATAC+AGG 0.460830 8_2:-60209023 Msa1258890:CDS
AGACTAGAGAGACCGGAAAT+AGG 0.462990 8_2:+60211413 None:intergenic
TATCTAACCATGCCATTGGC+AGG 0.464224 8_2:-60207816 Msa1258890:three_prime_UTR
AGTCTTACTTAATATCTAAA+GGG 0.465889 8_2:-60207904 Msa1258890:three_prime_UTR
CATTCCTGTCAGCTGAAGCT+AGG 0.467857 8_2:+60208176 None:intergenic
AATAACAGATCGATTATCAT+TGG 0.473031 8_2:+60208834 None:intergenic
GCTCTTTGCTTCAGCACAGA+TGG 0.474209 8_2:-60208595 Msa1258890:CDS
CTAGAAAGTGCGAGAAAAGC+AGG 0.474966 8_2:+60211199 None:intergenic
CTTTAGATATTAAGTAAGAC+TGG 0.475563 8_2:+60207906 None:intergenic
GACAACAATCATGTTGCCGC+TGG 0.477287 8_2:-60208313 Msa1258890:CDS
ATTTAGCCTGTATTTGCAAT+TGG 0.481713 8_2:+60209017 None:intergenic
AAGTTGTTCCTTGTTTAGAC+AGG 0.483019 8_2:-60207992 Msa1258890:three_prime_UTR
GAAAGCAGAGAACTTGGAAG+TGG 0.488324 8_2:-60210649 Msa1258890:CDS
AACCCCTAGCTTCAGCTGAC+AGG 0.489230 8_2:-60208180 Msa1258890:CDS
ATTCTAGTAGATTGATTACT+GGG 0.491572 8_2:-60208954 Msa1258890:CDS
GCGGCAACATGATTGTTGTC+TGG 0.492362 8_2:+60208316 None:intergenic
TGTTGTAGCTGGAGTGGAAT+GGG 0.499332 8_2:-60208205 Msa1258890:CDS
AGCCTGTATTTGCAATTGGA+AGG 0.502314 8_2:+60209021 None:intergenic
AAACGCCATCTTCTCGAAGA+AGG 0.507490 8_2:-60211232 Msa1258890:CDS
GCCTGTATTTGCAATTGGAA+GGG 0.520159 8_2:+60209022 None:intergenic
CATATATGGTCAATATCTAA+AGG 0.520412 8_2:-60208271 Msa1258890:CDS
GAGCGCCTTCTTCGAGAAGA+TGG 0.521377 8_2:+60211227 None:intergenic
GACATGTCGATGGTAATCTT+CGG 0.525301 8_2:-60208555 Msa1258890:CDS
AAAGTTTGGGACTTGATGAA+AGG 0.527945 8_2:-60208658 Msa1258890:CDS
TACTTCCACAACAAGTTGCT+CGG 0.529307 8_2:+60210590 None:intergenic
CAAAGAGCATTGCAGTTGCT+GGG 0.531625 8_2:+60208610 None:intergenic
AATTTATCTAACCATGCCAT+TGG 0.532907 8_2:-60207820 Msa1258890:three_prime_UTR
GTTGCCGCTGGGTCTACTGA+TGG 0.534764 8_2:-60208301 Msa1258890:CDS
GTGCAAATTATCCCTTCCAC+TGG 0.536187 8_2:+60208432 None:intergenic
GTTCTCTGTTGTAGCTGGAG+TGG 0.537003 8_2:-60208211 Msa1258890:CDS
AAAGTGTGGGATACAAATAC+AGG 0.539323 8_2:-60208913 Msa1258890:CDS
ATTGTTCGTCGAAGTGAAGA+AGG 0.542555 8_2:-60209072 Msa1258890:CDS
TATGTGTGGGATCTTAGCTC+AGG 0.543218 8_2:-60208787 Msa1258890:CDS
CTAGCTTCAGCTGACAGGAA+TGG 0.547140 8_2:-60208175 Msa1258890:CDS
AGAAGGAGTTGACAGAATTG+AGG 0.554456 8_2:-60210506 Msa1258890:intron
TTTCTATCTGGTCATAGTGA+CGG 0.558867 8_2:-60208071 Msa1258890:three_prime_UTR
GTGCGATCTCTGGAAGTTTG+TGG 0.559305 8_2:-60208397 Msa1258890:CDS
TGCAATTTCTGATATGCAGA+AGG 0.560064 8_2:-60210523 Msa1258890:CDS
CTTGATGTTAGAAAAGATGA+AGG 0.562481 8_2:-60210031 Msa1258890:CDS
TGAAATAATCAGTACTCTGA+AGG 0.562507 8_2:-60208248 Msa1258890:CDS
GTTATCCGAGCAACTTGTTG+TGG 0.566280 8_2:-60210595 Msa1258890:CDS
CTCAAACAACTTGTATGTGT+GGG 0.569983 8_2:-60208800 Msa1258890:CDS
CAGGTGGAGACTAGAGAGAC+CGG 0.577073 8_2:+60211406 None:intergenic
GCTCAAACAACTTGTATGTG+TGG 0.578898 8_2:-60208801 Msa1258890:CDS
CTGTTGTAGCTGGAGTGGAA+TGG 0.580319 8_2:-60208206 Msa1258890:CDS
TTTATCTGTGTGTCCAGTAA+GGG 0.581132 8_2:+60208750 None:intergenic
ATTACCACCTGCCAATGGCA+TGG 0.581760 8_2:+60207809 None:intergenic
AGACATGGTTCAGCGGCTAA+GGG 0.586487 8_2:-60209136 Msa1258890:CDS
ACAACTTGCAAGGGAACAAG+TGG 0.587447 8_2:-60209100 Msa1258890:CDS
GTTCAGCGGCTAAGGGCTAG+TGG 0.589500 8_2:-60209129 Msa1258890:CDS
ATATTGCATTGACCAGTGGA+AGG 0.590280 8_2:-60208444 Msa1258890:CDS
GGATGCTGAACGCCTAAATG+AGG 0.592570 8_2:-60210010 Msa1258890:intron
AATGCTATAAAGCTCAATCT+CGG 0.592904 8_2:-60210617 Msa1258890:CDS
TACAGGCTAAATGCACATGA+AGG 0.593778 8_2:-60209006 Msa1258890:CDS
ACAACAATCATGTTGCCGCT+GGG 0.594947 8_2:-60208312 Msa1258890:CDS
GTGGTCTAGAACAACTTGCA+AGG 0.596866 8_2:-60209110 Msa1258890:CDS
TATGGGACATTCAGAGTGGA+AGG 0.603476 8_2:-60208531 Msa1258890:CDS
TTGTGCGGTTGATGTTAGCA+AGG 0.604078 8_2:-60208725 Msa1258890:CDS
ATGATCTACTTATTTGTACG+TGG 0.604095 8_2:-60211438 Msa1258890:five_prime_UTR
GGTTAATTACCACCTGCCAA+TGG 0.605064 8_2:+60207804 None:intergenic
ACCAAACACAATAACAACAA+TGG 0.605530 8_2:-60211323 Msa1258890:exon
AGGATCGTTCAGTTAAAGTG+TGG 0.609417 8_2:-60208927 Msa1258890:CDS
GGATCGTTCAGTTAAAGTGT+GGG 0.613938 8_2:-60208926 Msa1258890:CDS
GGAAATATTGCATTGACCAG+TGG 0.615284 8_2:-60208448 Msa1258890:CDS
CTTGCAAGGGAACAAGTGGA+TGG 0.615284 8_2:-60209096 Msa1258890:CDS
TGGTCTAGAACAACTTGCAA+GGG 0.618737 8_2:-60209109 Msa1258890:CDS
TGATCTACTTATTTGTACGT+GGG 0.620905 8_2:-60211437 Msa1258890:five_prime_UTR
TTCCTGTCAGCTGAAGCTAG+GGG 0.627368 8_2:+60208178 None:intergenic
TATTGCATTGACCAGTGGAA+GGG 0.632302 8_2:-60208443 Msa1258890:CDS
TCTAGTAGATTGATTACTGG+GGG 0.632682 8_2:-60208952 Msa1258890:CDS
TGTGTCCAGTAAGGGTATGA+CGG 0.636119 8_2:+60208758 None:intergenic
GGTACGTACCTGAGAAACGA+TGG 0.636424 8_2:+60211174 None:intergenic
TGGCAGGTGGTAATTAACCT+AGG 0.643923 8_2:-60207800 Msa1258890:three_prime_UTR
GAGTGGAAGGCTGCTAAGTG+AGG 0.644822 8_2:-60208518 Msa1258890:CDS
TGAGATCCAATACTGAGCCA+AGG 0.644864 8_2:+60208863 None:intergenic
AGAAAGGGATATTGACGTGA+CGG 0.645528 8_2:+60208477 None:intergenic
AATGGTGTCCTGTCTAAACA+AGG 0.646342 8_2:+60207984 None:intergenic
ATCTGGTCATAGTGACGGTG+TGG 0.646777 8_2:-60208066 Msa1258890:three_prime_UTR
AGGCTAAATGCACATGAAGG+AGG 0.648402 8_2:-60209003 Msa1258890:CDS
TATATGAAGACATGGTTCAG+CGG 0.657419 8_2:-60209143 Msa1258890:CDS
GTACGTACCTGAGAAACGAT+GGG 0.661026 8_2:+60211175 None:intergenic
AAATGCGCTATATGAAGACA+TGG 0.661275 8_2:-60209151 Msa1258890:CDS
ACACACAGATAAAGTTTGTG+CGG 0.667943 8_2:-60208740 Msa1258890:CDS
TTCTAGTAGATTGATTACTG+GGG 0.672008 8_2:-60208953 Msa1258890:CDS
CGGTTATGGGACATTCAGAG+TGG 0.682375 8_2:-60208535 Msa1258890:CDS
GGTAATTAACCTAGGAACAG+CGG 0.683386 8_2:-60207792 Msa1258890:three_prime_UTR
CTAACCATGCCATTGGCAGG+TGG 0.683421 8_2:-60207813 Msa1258890:three_prime_UTR
AGAAGCCACTCTGTTAACTG+TGG 0.703135 8_2:+60208363 None:intergenic
ATCTGGTCATAATGGCTGTG+TGG 0.714659 8_2:-60208142 Msa1258890:exon
ACGAGCCACAGTTAACAGAG+TGG 0.730751 8_2:-60208368 Msa1258890:CDS
AGATCCATCAGTAGACCCAG+CGG 0.753123 8_2:+60208297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACAATTTTCATTTTTTTT+AGG - chr8_2:60208091-60208110 Msa1258890:three_prime_UTR 10.0%
!!! AACAATTTTCATTTTTTTTA+GGG - chr8_2:60208092-60208111 Msa1258890:three_prime_UTR 10.0%
!! AATGAAAATTGTTAATGAAA+GGG + chr8_2:60208085-60208104 None:intergenic 15.0%
!! AAATGAAAATTGTTAATGAA+AGG + chr8_2:60208086-60208105 None:intergenic 15.0%
!! AAAGGAAACAATAAAAAAAA+TGG + chr8_2:60208152-60208171 None:intergenic 15.0%
!! TAAGTAAAAAAACTCATTTA+TGG + chr8_2:60209010-60209029 None:intergenic 15.0%
!! AAAAACTCTTATAAGTTTAT+AGG + chr8_2:60209546-60209565 None:intergenic 15.0%
!! AAATGTATTATTAGTTGAAT+CGG + chr8_2:60210049-60210068 None:intergenic 15.0%
!!! CTATTTTACAGTTTTTAAAT+TGG - chr8_2:60211202-60211221 Msa1258890:CDS 15.0%
!!! TTTTATTGTTTCCTTTATTG+TGG - chr8_2:60208156-60208175 Msa1258890:CDS 20.0%
!! TTTATTGTTTCCTTTATTGT+GGG - chr8_2:60208157-60208176 Msa1258890:CDS 20.0%
!!! AATTTACCTATTTTTAACTG+TGG - chr8_2:60208400-60208419 Msa1258890:CDS 20.0%
!! ATAAAAAAGTTCGATTAAAC+GGG + chr8_2:60209380-60209399 None:intergenic 20.0%
!! GATAAAAAAGTTCGATTAAA+CGG + chr8_2:60209381-60209400 None:intergenic 20.0%
!! CATCATTCAAAAAAATTCAA+TGG + chr8_2:60211272-60211291 None:intergenic 20.0%
!! AGTCTTACTTAATATCTAAA+GGG - chr8_2:60211331-60211350 Msa1258890:five_prime_UTR 20.0%
! TCACTAACTTGATTGAATTA+GGG + chr8_2:60207881-60207900 None:intergenic 25.0%
! ATCACTAACTTGATTGAATT+AGG + chr8_2:60207882-60207901 None:intergenic 25.0%
! ATGACTGAACTAATTTCTTA+CGG + chr8_2:60208184-60208203 None:intergenic 25.0%
! TAATTCAATGTGATCACATA+TGG + chr8_2:60208315-60208334 None:intergenic 25.0%
! AACTTTCCACAGTTAAAAAT+AGG + chr8_2:60208409-60208428 None:intergenic 25.0%
!!! TTTTAACTGTGGAAAGTTAT+TGG - chr8_2:60208411-60208430 Msa1258890:CDS 25.0%
! TGATGTATTTATGTTGTTGA+AGG - chr8_2:60208547-60208566 Msa1258890:CDS 25.0%
! GATGTATTTATGTTGTTGAA+GGG - chr8_2:60208548-60208567 Msa1258890:CDS 25.0%
! AAATTAATGTTGCAAAATGC+AGG - chr8_2:60209029-60209048 Msa1258890:CDS 25.0%
! AATTAATGTTGCAAAATGCA+GGG - chr8_2:60209030-60209049 Msa1258890:CDS 25.0%
! GATTGTATTATACCTCATTT+AGG + chr8_2:60209240-60209259 None:intergenic 25.0%
! AAGTTGAAATGAATTTGCAA+TGG - chr8_2:60209419-60209438 Msa1258890:intron 25.0%
! AACTCATAGTGCATAATATT+TGG - chr8_2:60209762-60209781 Msa1258890:intron 25.0%
!!! TGAAAAGAAAAAGTACTAAC+TGG + chr8_2:60209881-60209900 None:intergenic 25.0%
! AATTCTAGTAGATTGATTAC+TGG - chr8_2:60210280-60210299 Msa1258890:intron 25.0%
! ATTCTAGTAGATTGATTACT+GGG - chr8_2:60210281-60210300 Msa1258890:intron 25.0%
! AATAACAGATCGATTATCAT+TGG + chr8_2:60210404-60210423 None:intergenic 25.0%
! AATATTTCCATTTCGAGAAA+GGG + chr8_2:60210776-60210795 None:intergenic 25.0%
! CATATATGGTCAATATCTAA+AGG - chr8_2:60210964-60210983 Msa1258890:intron 25.0%
!!! CAGTTTTAAGAAAATCTAAC+AGG - chr8_2:60211131-60211150 Msa1258890:intron 25.0%
! TTAAGAAAATCTAACAGGTA+TGG - chr8_2:60211136-60211155 Msa1258890:intron 25.0%
! TAAGAAAATCTAACAGGTAT+GGG - chr8_2:60211137-60211156 Msa1258890:intron 25.0%
!! TTTACAGTTTTTAAATTGGC+TGG - chr8_2:60211206-60211225 Msa1258890:CDS 25.0%
! CTTTAGATATTAAGTAAGAC+TGG + chr8_2:60211332-60211351 None:intergenic 25.0%
! CAGTCTTACTTAATATCTAA+AGG - chr8_2:60211330-60211349 Msa1258890:five_prime_UTR 25.0%
ATGATCTACTTATTTGTACG+TGG - chr8_2:60207797-60207816 Msa1258890:three_prime_UTR 30.0%
TGATCTACTTATTTGTACGT+GGG - chr8_2:60207798-60207817 Msa1258890:three_prime_UTR 30.0%
!! TTCTGATTCGAATGATTTTC+AGG + chr8_2:60207851-60207870 None:intergenic 30.0%
ACCAAACACAATAACAACAA+TGG - chr8_2:60207912-60207931 Msa1258890:three_prime_UTR 30.0%
! ACCATTGTTGTTATTGTGTT+TGG + chr8_2:60207916-60207935 None:intergenic 30.0%
ATAACAACAATGGTGAAAAC+TGG - chr8_2:60207922-60207941 Msa1258890:three_prime_UTR 30.0%
! ACTACTAAGCACTATTCTTT+TGG + chr8_2:60208212-60208231 None:intergenic 30.0%
AATGCTATAAAGCTCAATCT+CGG - chr8_2:60208618-60208637 Msa1258890:CDS 30.0%
! TGCATTTTCTTTCTCTTGAA+GGG + chr8_2:60208696-60208715 None:intergenic 30.0%
! TTGCATTTTCTTTCTCTTGA+AGG + chr8_2:60208697-60208716 None:intergenic 30.0%
! TAGCTGCTATTTAACAACAT+TGG + chr8_2:60208782-60208801 None:intergenic 30.0%
CAAATTCTGCTATGGTATAA+CGG + chr8_2:60208810-60208829 None:intergenic 30.0%
AGTGTATCTTGAAACTATAG+CGG + chr8_2:60208839-60208858 None:intergenic 30.0%
TACAAAATGTTGTCCAATAG+CGG - chr8_2:60208865-60208884 Msa1258890:CDS 30.0%
ACTAAAAAAAATGTTGGTCG+CGG + chr8_2:60208984-60209003 None:intergenic 30.0%
TGGCAGACTAAAAAAAATGT+TGG + chr8_2:60208990-60209009 None:intergenic 30.0%
CTCTCAATTAAAGACAGATT+TGG - chr8_2:60209060-60209079 Msa1258890:CDS 30.0%
! TCATCTTTTCTAACATCAAG+CGG + chr8_2:60209204-60209223 None:intergenic 30.0%
CTTGATGTTAGAAAAGATGA+AGG - chr8_2:60209204-60209223 Msa1258890:intron 30.0%
TAGTTCCAAAAGTTGTATAC+TGG + chr8_2:60209275-60209294 None:intergenic 30.0%
!!! ACTTTTTTATCAGCACTTGA+AGG - chr8_2:60209390-60209409 Msa1258890:intron 30.0%
TCAAACAACTATCTTTGACA+AGG + chr8_2:60209452-60209471 None:intergenic 30.0%
AAAGATAGTTGTTTGACTGT+AGG - chr8_2:60209456-60209475 Msa1258890:intron 30.0%
!!! TGTACCTCAATTTTTTCAGA+AGG - chr8_2:60209493-60209512 Msa1258890:intron 30.0%
! AGAACCTTCTGAAAAAATTG+AGG + chr8_2:60209500-60209519 None:intergenic 30.0%
AAGTACATCAAATCCAATGT+TGG + chr8_2:60209684-60209703 None:intergenic 30.0%
AATACATTTCCCATCTCTTT+AGG - chr8_2:60210060-60210079 Msa1258890:CDS 30.0%
ATTTAGCCTGTATTTGCAAT+TGG + chr8_2:60210221-60210240 None:intergenic 30.0%
AGAATTGTACTCGAACAATA+AGG + chr8_2:60210266-60210285 None:intergenic 30.0%
TTCTAGTAGATTGATTACTG+GGG - chr8_2:60210282-60210301 Msa1258890:intron 30.0%
! AGTCCCAAACTTTTATAGTA+CGG + chr8_2:60210570-60210589 None:intergenic 30.0%
CAATATTTCCATTTCGAGAA+AGG + chr8_2:60210777-60210796 None:intergenic 30.0%
TGAAATAATCAGTACTCTGA+AGG - chr8_2:60210987-60211006 Msa1258890:intron 30.0%
TTGTTTCAATCTGGTCATAA+TGG - chr8_2:60211085-60211104 Msa1258890:intron 30.0%
AATTTATCTAACCATGCCAT+TGG - chr8_2:60211415-60211434 Msa1258890:five_prime_UTR 30.0%
!! TGATTCGAATGATTTTCAGG+TGG + chr8_2:60207848-60207867 None:intergenic 35.0%
! TCAATCGCAACTTGTTCTTT+CGG + chr8_2:60207952-60207971 None:intergenic 35.0%
TTCAGAATGTTGCTCGATAT+TGG - chr8_2:60208452-60208471 Msa1258890:CDS 35.0%
!!! AGCTTTTGAAACTCTAGACT+CGG + chr8_2:60208672-60208691 None:intergenic 35.0%
TGCAATTTCTGATATGCAGA+AGG - chr8_2:60208712-60208731 Msa1258890:CDS 35.0%
CGTTATACCATAGCAGAATT+TGG - chr8_2:60208808-60208827 Msa1258890:CDS 35.0%
TCGAGAATAGCAGAAAATAG+TGG + chr8_2:60208942-60208961 None:intergenic 35.0%
CTATTCTCGATTGACAACAT+TGG - chr8_2:60208952-60208971 Msa1258890:CDS 35.0%
! TTCAGAACTAAAAGCACAAC+TGG - chr8_2:60209123-60209142 Msa1258890:CDS 35.0%
! CTATACATTTTCCGTGTGAA+TGG - chr8_2:60209307-60209326 Msa1258890:intron 35.0%
!! ATTTTCCGTGTGAATGGATT+TGG - chr8_2:60209313-60209332 Msa1258890:intron 35.0%
AAACTAAGCTTCAAGCTTGT+AGG + chr8_2:60209617-60209636 None:intergenic 35.0%
AAATGCGCTATATGAAGACA+TGG - chr8_2:60210084-60210103 Msa1258890:CDS 35.0%
TATATGAAGACATGGTTCAG+CGG - chr8_2:60210092-60210111 Msa1258890:CDS 35.0%
TCTAGTAGATTGATTACTGG+GGG - chr8_2:60210283-60210302 Msa1258890:intron 35.0%
AAAGTGTGGGATACAAATAC+AGG - chr8_2:60210322-60210341 Msa1258890:intron 35.0%
TCCTTAAGTTCAAGTCTTAC+TGG - chr8_2:60210346-60210365 Msa1258890:intron 35.0%
CTCAAACAACTTGTATGTGT+GGG - chr8_2:60210435-60210454 Msa1258890:intron 35.0%
TTTATCTGTGTGTCCAGTAA+GGG + chr8_2:60210488-60210507 None:intergenic 35.0%
ACACACAGATAAAGTTTGTG+CGG - chr8_2:60210495-60210514 Msa1258890:intron 35.0%
ACGACCGTACTATAAAAGTT+TGG - chr8_2:60210563-60210582 Msa1258890:CDS 35.0%
CGACCGTACTATAAAAGTTT+GGG - chr8_2:60210564-60210583 Msa1258890:CDS 35.0%
! AAAGTTTGGGACTTGATGAA+AGG - chr8_2:60210577-60210596 Msa1258890:CDS 35.0%
ATCGACATGTCCAGAAAATA+TGG + chr8_2:60210671-60210690 None:intergenic 35.0%
! ATATTTTCTGGACATGTCGA+TGG - chr8_2:60210670-60210689 Msa1258890:intron 35.0%
TCAATATCCCTTTCTCGAAA+TGG - chr8_2:60210766-60210785 Msa1258890:intron 35.0%
TTAACAGAGTGGCTTCTAAT+TGG - chr8_2:60210878-60210897 Msa1258890:intron 35.0%
GGAATGGAATTGTTTCAATC+TGG - chr8_2:60211076-60211095 Msa1258890:intron 35.0%
TTTCTATCTGGTCATAGTGA+CGG - chr8_2:60211164-60211183 Msa1258890:intron 35.0%
! AAGTTGTTCCTTGTTTAGAC+AGG - chr8_2:60211243-60211262 Msa1258890:CDS 35.0%
TTCTTACGGACCCACAATAA+AGG + chr8_2:60208170-60208189 None:intergenic 40.0%
GTTATTAACTCTTGTAGCGC+CGG - chr8_2:60208237-60208256 Msa1258890:CDS 40.0%
! ACACATTCAATCAGAAGTGC+CGG + chr8_2:60208259-60208278 None:intergenic 40.0%
!! GCTCGATATTGGTGTTAAGT+TGG - chr8_2:60208463-60208482 Msa1258890:CDS 40.0%
!! TTGGTGTTAAGTTGGTTGCT+TGG - chr8_2:60208471-60208490 Msa1258890:CDS 40.0%
TTGGTTGCTTGGATAGTTGA+TGG - chr8_2:60208482-60208501 Msa1258890:CDS 40.0%
!!! TGTTGTTGAAGGGTTTTGAG+TGG - chr8_2:60208558-60208577 Msa1258890:CDS 40.0%
GAAAGAGAAAGCAGAGAACT+TGG - chr8_2:60208580-60208599 Msa1258890:CDS 40.0%
TACTTCCACAACAAGTTGCT+CGG + chr8_2:60208648-60208667 None:intergenic 40.0%
AGAAGGAGTTGACAGAATTG+AGG - chr8_2:60208729-60208748 Msa1258890:CDS 40.0%
GGTTTGTCCAAATTCTGCTA+TGG + chr8_2:60208818-60208837 None:intergenic 40.0%
GCTATAGCACTATTGTGTAG+CGG - chr8_2:60208904-60208923 Msa1258890:CDS 40.0%
! CTCGTCCAGTATACAACTTT+TGG - chr8_2:60209267-60209286 Msa1258890:intron 40.0%
CAAAGCCAAATCCATTCACA+CGG + chr8_2:60209321-60209340 None:intergenic 40.0%
CAGCAATTTCACACCAACAT+TGG - chr8_2:60209668-60209687 Msa1258890:intron 40.0%
TTGTTCACAACAGTCTCGTT+AGG + chr8_2:60209836-60209855 None:intergenic 40.0%
!! GTTCACATCATAGTCTTGTG+AGG + chr8_2:60209978-60209997 None:intergenic 40.0%
! TGGTCTAGAACAACTTGCAA+GGG - chr8_2:60210126-60210145 Msa1258890:CDS 40.0%
ATTGTTCGTCGAAGTGAAGA+AGG - chr8_2:60210163-60210182 Msa1258890:CDS 40.0%
TCCCTTCCAATTGCAAATAC+AGG - chr8_2:60210212-60210231 Msa1258890:intron 40.0%
GCCTGTATTTGCAATTGGAA+GGG + chr8_2:60210216-60210235 None:intergenic 40.0%
AGCCTGTATTTGCAATTGGA+AGG + chr8_2:60210217-60210236 None:intergenic 40.0%
TACAGGCTAAATGCACATGA+AGG - chr8_2:60210229-60210248 Msa1258890:intron 40.0%
AGGATCGTTCAGTTAAAGTG+TGG - chr8_2:60210308-60210327 Msa1258890:intron 40.0%
GGATCGTTCAGTTAAAGTGT+GGG - chr8_2:60210309-60210328 Msa1258890:intron 40.0%
GCCAGTAAGACTTGAACTTA+AGG + chr8_2:60210350-60210369 None:intergenic 40.0%
GCTCAAACAACTTGTATGTG+TGG - chr8_2:60210434-60210453 Msa1258890:intron 40.0%
CTTTATCTGTGTGTCCAGTA+AGG + chr8_2:60210489-60210508 None:intergenic 40.0%
! GATGGACAGACCATATTTTC+TGG - chr8_2:60210658-60210677 Msa1258890:CDS 40.0%
GACATGTCGATGGTAATCTT+CGG - chr8_2:60210680-60210699 Msa1258890:intron 40.0%
TCGATGGTAATCTTCGGTTA+TGG - chr8_2:60210686-60210705 Msa1258890:intron 40.0%
CGATGGTAATCTTCGGTTAT+GGG - chr8_2:60210687-60210706 Msa1258890:intron 40.0%
AGAAAGGGATATTGACGTGA+CGG + chr8_2:60210761-60210780 None:intergenic 40.0%
! GGAAATATTGCATTGACCAG+TGG - chr8_2:60210787-60210806 Msa1258890:intron 40.0%
! ATATTGCATTGACCAGTGGA+AGG - chr8_2:60210791-60210810 Msa1258890:intron 40.0%
! TATTGCATTGACCAGTGGAA+GGG - chr8_2:60210792-60210811 Msa1258890:intron 40.0%
TTTGTTTGATGTGCGATCTC+TGG - chr8_2:60210828-60210847 Msa1258890:intron 40.0%
! CTGATGGATCTGTGCATATA+TGG - chr8_2:60210950-60210969 Msa1258890:intron 40.0%
!! GGTATGGGATTGTTTCTATC+TGG - chr8_2:60211152-60211171 Msa1258890:intron 40.0%
AATGGTGTCCTGTCTAAACA+AGG + chr8_2:60211254-60211273 None:intergenic 40.0%
GGTAATTAACCTAGGAACAG+CGG - chr8_2:60211443-60211462 Msa1258890:five_prime_UTR 40.0%
TTGTACGTGGGACCTATTTC+CGG - chr8_2:60207810-60207829 Msa1258890:three_prime_UTR 45.0%
AGACTAGAGAGACCGGAAAT+AGG + chr8_2:60207825-60207844 None:intergenic 45.0%
AAACGCCATCTTCTCGAAGA+AGG - chr8_2:60208003-60208022 Msa1258890:three_prime_UTR 45.0%
! CTAGAAAGTGCGAGAAAAGC+AGG + chr8_2:60208039-60208058 None:intergenic 45.0%
TTCTAGACCCATCGTTTCTC+AGG - chr8_2:60208053-60208072 Msa1258890:three_prime_UTR 45.0%
GTACGTACCTGAGAAACGAT+GGG + chr8_2:60208063-60208082 None:intergenic 45.0%
TGTCAGTGTCTGACATGTGT+CGG - chr8_2:60208278-60208297 Msa1258890:CDS 45.0%
GAAAGCAGAGAACTTGGAAG+TGG - chr8_2:60208586-60208605 Msa1258890:CDS 45.0%
!! GTTATCCGAGCAACTTGTTG+TGG - chr8_2:60208640-60208659 Msa1258890:CDS 45.0%
TTGTCCAATAGCGGCTATAG+TGG - chr8_2:60208874-60208893 Msa1258890:CDS 45.0%
! CGTGTGAATGGATTTGGCTT+TGG - chr8_2:60209319-60209338 Msa1258890:intron 45.0%
GGCAAGTTGTGCAATCTTGA+CGG - chr8_2:60209340-60209359 Msa1258890:intron 45.0%
AGGTAAATGACACTTGCCAG+TGG + chr8_2:60209645-60209664 None:intergenic 45.0%
TTGGTGTGAAATTGCTGAGC+AGG + chr8_2:60209665-60209684 None:intergenic 45.0%
GCGCATTTGCCTAAAGAGAT+GGG + chr8_2:60210072-60210091 None:intergenic 45.0%
AGCGCATTTGCCTAAAGAGA+TGG + chr8_2:60210073-60210092 None:intergenic 45.0%
! GTGGTCTAGAACAACTTGCA+AGG - chr8_2:60210125-60210144 Msa1258890:CDS 45.0%
ACAACTTGCAAGGGAACAAG+TGG - chr8_2:60210135-60210154 Msa1258890:CDS 45.0%
AGGCTAAATGCACATGAAGG+AGG - chr8_2:60210232-60210251 Msa1258890:intron 45.0%
TAGATTGATTACTGGGGGAC+AGG - chr8_2:60210288-60210307 Msa1258890:intron 45.0%
TGAGATCCAATACTGAGCCA+AGG + chr8_2:60210375-60210394 None:intergenic 45.0%
TATGTGTGGGATCTTAGCTC+AGG - chr8_2:60210448-60210467 Msa1258890:intron 45.0%
! TGTGTCCAGTAAGGGTATGA+CGG + chr8_2:60210480-60210499 None:intergenic 45.0%
! TTGTGCGGTTGATGTTAGCA+AGG - chr8_2:60210510-60210529 Msa1258890:CDS 45.0%
!! CAAAGAGCATTGCAGTTGCT+GGG + chr8_2:60210628-60210647 None:intergenic 45.0%
TATGGGACATTCAGAGTGGA+AGG - chr8_2:60210704-60210723 Msa1258890:intron 45.0%
GTGCAAATTATCCCTTCCAC+TGG + chr8_2:60210806-60210825 None:intergenic 45.0%
AGAAGCCACTCTGTTAACTG+TGG + chr8_2:60210875-60210894 None:intergenic 45.0%
ACAACAATCATGTTGCCGCT+GGG - chr8_2:60210923-60210942 Msa1258890:intron 45.0%
CTTCTGTTCTCTGTTGTAGC+TGG - chr8_2:60211019-60211038 Msa1258890:intron 45.0%
TGTTGTAGCTGGAGTGGAAT+GGG - chr8_2:60211030-60211049 Msa1258890:intron 45.0%
ATTCCTGTCAGCTGAAGCTA+GGG + chr8_2:60211061-60211080 None:intergenic 45.0%
ATCTGGTCATAATGGCTGTG+TGG - chr8_2:60211093-60211112 Msa1258890:intron 45.0%
TATCTAACCATGCCATTGGC+AGG - chr8_2:60211419-60211438 Msa1258890:five_prime_UTR 45.0%
GGTTAATTACCACCTGCCAA+TGG + chr8_2:60211434-60211453 None:intergenic 45.0%
TGGCAGGTGGTAATTAACCT+AGG - chr8_2:60211435-60211454 Msa1258890:five_prime_UTR 45.0%
GGTACGTACCTGAGAAACGA+TGG + chr8_2:60208064-60208083 None:intergenic 50.0%
AGCACCACTATAGCCGCTAT+TGG + chr8_2:60208881-60208900 None:intergenic 50.0%
GGATGCTGAACGCCTAAATG+AGG - chr8_2:60209225-60209244 Msa1258890:intron 50.0%
!! AAGCTTAGTTTGCCTGCCAC+TGG - chr8_2:60209626-60209645 Msa1258890:intron 50.0%
AAATGACACTTGCCAGTGGC+AGG + chr8_2:60209641-60209660 None:intergenic 50.0%
AAGACATGGTTCAGCGGCTA+AGG - chr8_2:60210098-60210117 Msa1258890:CDS 50.0%
AGACATGGTTCAGCGGCTAA+GGG - chr8_2:60210099-60210118 Msa1258890:CDS 50.0%
CTTGCAAGGGAACAAGTGGA+TGG - chr8_2:60210139-60210158 Msa1258890:CDS 50.0%
! TCAAGTCTTACTGGCTGCCT+TGG - chr8_2:60210355-60210374 Msa1258890:intron 50.0%
!! GCAAAGAGCATTGCAGTTGC+TGG + chr8_2:60210629-60210648 None:intergenic 50.0%
GCTCTTTGCTTCAGCACAGA+TGG - chr8_2:60210640-60210659 Msa1258890:CDS 50.0%
CGGTTATGGGACATTCAGAG+TGG - chr8_2:60210700-60210719 Msa1258890:intron 50.0%
! GTGCGATCTCTGGAAGTTTG+TGG - chr8_2:60210838-60210857 Msa1258890:intron 50.0%
ACGAGCCACAGTTAACAGAG+TGG - chr8_2:60210867-60210886 Msa1258890:intron 50.0%
GCGGCAACATGATTGTTGTC+TGG + chr8_2:60210922-60210941 None:intergenic 50.0%
GACAACAATCATGTTGCCGC+TGG - chr8_2:60210922-60210941 Msa1258890:intron 50.0%
AGATCCATCAGTAGACCCAG+CGG + chr8_2:60210941-60210960 None:intergenic 50.0%
GTTCTCTGTTGTAGCTGGAG+TGG - chr8_2:60211024-60211043 Msa1258890:intron 50.0%
CTGTTGTAGCTGGAGTGGAA+TGG - chr8_2:60211029-60211048 Msa1258890:intron 50.0%
TTCCTGTCAGCTGAAGCTAG+GGG + chr8_2:60211060-60211079 None:intergenic 50.0%
CATTCCTGTCAGCTGAAGCT+AGG + chr8_2:60211062-60211081 None:intergenic 50.0%
CTAGCTTCAGCTGACAGGAA+TGG - chr8_2:60211060-60211079 Msa1258890:intron 50.0%
ATCTGGTCATAGTGACGGTG+TGG - chr8_2:60211169-60211188 Msa1258890:intron 50.0%
ATTACCACCTGCCAATGGCA+TGG + chr8_2:60211429-60211448 None:intergenic 50.0%
CAGGTGGAGACTAGAGAGAC+CGG + chr8_2:60207832-60207851 None:intergenic 55.0%
GAGCGCCTTCTTCGAGAAGA+TGG + chr8_2:60208011-60208030 None:intergenic 55.0%
TGGCTGCCTTGGCTCAGTAT+TGG - chr8_2:60210366-60210385 Msa1258890:intron 55.0%
CGAGTCCGTCATACCCTTAC+TGG - chr8_2:60210472-60210491 Msa1258890:intron 55.0%
GAGTGGAAGGCTGCTAAGTG+AGG - chr8_2:60210717-60210736 Msa1258890:intron 55.0%
AACCCCTAGCTTCAGCTGAC+AGG - chr8_2:60211055-60211074 Msa1258890:intron 55.0%
CTAACCATGCCATTGGCAGG+TGG - chr8_2:60211422-60211441 Msa1258890:five_prime_UTR 55.0%
GTTCAGCGGCTAAGGGCTAG+TGG - chr8_2:60210106-60210125 Msa1258890:CDS 60.0%
GTTGCCGCTGGGTCTACTGA+TGG - chr8_2:60210934-60210953 Msa1258890:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 60207790 60211467 60207790 ID=Msa1258890;Name=Msa1258890
chr8_2 mRNA 60207790 60211467 60207790 ID=Msa1258890-mRNA-1;Parent=Msa1258890;Name=Msa1258890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=141|1|1|1|1|1|4|363|514
chr8_2 exon 60207790 60209175 60207790 ID=Msa1258890-mRNA-1:exon:18903;Parent=Msa1258890-mRNA-1
chr8_2 exon 60210011 60210206 60210011 ID=Msa1258890-mRNA-1:exon:18902;Parent=Msa1258890-mRNA-1
chr8_2 exon 60210507 60210688 60210507 ID=Msa1258890-mRNA-1:exon:18901;Parent=Msa1258890-mRNA-1
chr8_2 exon 60211183 60211467 60211183 ID=Msa1258890-mRNA-1:exon:18900;Parent=Msa1258890-mRNA-1
chr8_2 five_prime_UTR 60211327 60211467 60211327 ID=Msa1258890-mRNA-1:five_prime_utr;Parent=Msa1258890-mRNA-1
chr8_2 CDS 60211183 60211326 60211183 ID=Msa1258890-mRNA-1:cds;Parent=Msa1258890-mRNA-1
chr8_2 CDS 60210507 60210688 60210507 ID=Msa1258890-mRNA-1:cds;Parent=Msa1258890-mRNA-1
chr8_2 CDS 60210011 60210206 60210011 ID=Msa1258890-mRNA-1:cds;Parent=Msa1258890-mRNA-1
chr8_2 CDS 60208153 60209175 60208153 ID=Msa1258890-mRNA-1:cds;Parent=Msa1258890-mRNA-1
chr8_2 three_prime_UTR 60207790 60208152 60207790 ID=Msa1258890-mRNA-1:three_prime_utr;Parent=Msa1258890-mRNA-1
Gene Sequence

>Msa1258890

ATGGTGAAAACTGGAAGACCGAAAGAACAAGTTGCGATTGATGCAATCAATTATGCTATGAAAGCTCTCAAGAAACGCCATCTTCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATCGTTTCTCAGGGTTTTGAGTGGAAAGAGAAAGCAGAGAACTTGGAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTATCCGAGCAACTTGTTGTGGAAGTAGCCGAGTCTAGAGTTTCAAAAGCTTCCCTTCAAGAGAAAGAAAATGCAATTTCTGATATGCAGAAGGAGTTGACAGAATTGAGGGATGAGTGCTCTCAATTAAAGACAGATTTGGAGCAAAAGACTAAAGAAGTAGAATTAGTTCTGAGCGAGAATTCAGAACTAAAAGCACAACTGGAGCAGATGACTACTAAAGCTAATGAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTTGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCGCTATATGAAGACATGGTTCAGCGGCTAAGGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAAGTGGATGGAATTGTTCGTCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCAATTGCAAATACAGGCTAAATGCACATGAAGGAGGTTGTGCTTCCTTATTGTTCGAGTACAATTCTAGTAGATTGATTACTGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCCTTAAGTTCAAGTCTTACTGGCTGCCTTGGCTCAGTATTGGATCTCACTATCACCAATGATAATCGATCTGTTATTGCTGCGAGCAGCTCAAACAACTTGTATGTGTGGGATCTTAGCTCAGGTCGAGTCCGTCATACCCTTACTGGACACACAGATAAAGTTTGTGCGGTTGATGTTAGCAAGGTTTCGAGTCGTCTTGTTGTCAGTGCAGCTTACGACCGTACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAACACAATCATGTTTCCCAGCAACTGCAATGCTCTTTGCTTCAGCACAGATGGACAGACCATATTTTCTGGACATGTCGATGGTAATCTTCGGTTATGGGACATTCAGAGTGGAAGGCTGCTAAGTGAGGTTGCTGCACATTCACACGCCGTCACGTCAATATCCCTTTCTCGAAATGGAAATATTGCATTGACCAGTGGAAGGGATAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGTACATTACGAGCCACAGTTAACAGAGTGGCTTCTAATTGGAGTCGCTCATGTATCAGTCCAGACAACAATCATGTTGCCGCTGGGTCTACTGATGGATCTGTGCATATATGGTCAATATCTAAAGGTGAAATAATCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTCTGTTGTAGCTGGAGTGGAATGGGAAAACCCCTAGCTTCAGCTGACAGGAATGGAATTGTTTCAATCTGGTCATAA

Protein sequence

>Msa1258890

MVKTGRPKEQVAIDAINYAMKALKKRHLLEEGAHAPAFLALSRPIVSQGFEWKEKAENLEVELQQCYKAQSRLSEQLVVEVAESRVSKASLQEKENAISDMQKELTELRDECSQLKTDLEQKTKEVELVLSENSELKAQLEQMTTKANEAEAENKMLIDRLMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSNCKYRLNAHEGGCASLLFEYNSSRLITGGQDRSVKVWDTNTGSLSSSLTGCLGSVLDLTITNDNRSVIAASSSNNLYVWDLSSGRVRHTLTGHTDKVCAVDVSKVSSRLVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSTDGQTIFSGHVDGNLRLWDIQSGRLLSEVAAHSHAVTSISLSRNGNIALTSGRDNLHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNNHVAAGSTDGSVHIWSISKGEIISTLKEHTSSVLCCSWSGMGKPLASADRNGIVSIWS*