AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419930 MtrunA17_Chr7g0262621 96.403 139 4 1 1 139 1 138 4.04e-94 268
Msa1419930 MtrunA17_Chr1g0182931 57.971 138 47 3 11 138 11 147 3.80e-34 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419930 AT2G20260.1 52.667 150 48 3 6 139 3 145 1.62e-38 127
Msa1419930 AT4G28750.1 66.355 107 25 1 43 138 35 141 4.40e-32 111

Find 44 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTACTGCTATCAATTTA+AGG 0.157746 tig0024732:-70627 Msa1419930:three_prime_UTR
TAATTCAAGTTGCTAGATTA+AGG 0.232537 tig0024732:-70817 Msa1419930:three_prime_UTR
TTGTCACCTAATAATGTTTC+AGG 0.245319 tig0024732:-71704 Msa1419930:CDS
CCAATTCTAGACTTGTTGTT+AGG 0.258382 tig0024732:-71613 Msa1419930:CDS
ACACACCTTAGCACCTCTTT+TGG 0.283501 tig0024732:+71514 None:intergenic
TTGTTGAATCTTACCACAAC+TGG 0.285947 tig0024732:+70931 None:intergenic
ACAACTGGGTAGCGAGTATT+AGG 0.348189 tig0024732:+70946 None:intergenic
AACATAGCATCAGCAGCTTC+AGG 0.370983 tig0024732:-71734 Msa1419930:CDS
TCCTACTGGTTCAATGGTAT+TGG 0.371489 tig0024732:-71086 Msa1419930:CDS
GTGTTGCCTGAAACATTATT+AGG 0.375498 tig0024732:+71698 None:intergenic
TTCTGTTGTTGCTGTTGATC+AGG 0.388075 tig0024732:-71063 Msa1419930:intron
TTAAGTATTATCTGTTTATG+AGG 0.388300 tig0024732:+70695 None:intergenic
CCTAACAACAAGTCTAGAAT+TGG 0.406311 tig0024732:+71613 None:intergenic
ATCAACAAACAACTATGCTT+TGG 0.412222 tig0024732:-70890 Msa1419930:CDS
CATTACTGCTATCAATTTAA+GGG 0.415110 tig0024732:-70626 Msa1419930:three_prime_UTR
TTGGTGTTCTTTGTAGTAGT+AGG 0.427451 tig0024732:+71632 None:intergenic
ATTCATTTAAATTATAAAGA+GGG 0.435722 tig0024732:+70658 None:intergenic
CTATGCTTTGGATGAGATTG+AGG 0.451083 tig0024732:-70878 Msa1419930:CDS
CAATTCTAGACTTGTTGTTA+GGG 0.467358 tig0024732:-71612 Msa1419930:CDS
AAAGAATCCTACTGGTTCAA+TGG 0.482430 tig0024732:-71092 Msa1419930:CDS
TGGTGTTCTTTGTAGTAGTA+GGG 0.490325 tig0024732:+71633 None:intergenic
TATTCATTTAAATTATAAAG+AGG 0.495397 tig0024732:+70657 None:intergenic
TTCTTAGAAAAGAATCCTAC+TGG 0.502179 tig0024732:-71100 Msa1419930:CDS
GCTGCAACACCAACTGTTGA+AGG 0.512678 tig0024732:-71575 Msa1419930:CDS
TTCATTTAAATTATAAAGAG+GGG 0.513168 tig0024732:+70659 None:intergenic
TGTGTCATCAAGAGGTAGAA+TGG 0.521038 tig0024732:+70739 None:intergenic
AAAGACAAGAACAAAGATTG+AGG 0.522834 tig0024732:+71833 None:intergenic
CCACCAATTGGTCCCAAAAG+AGG 0.526898 tig0024732:-71527 Msa1419930:CDS
ACATAGCATCAGCAGCTTCA+GGG 0.527887 tig0024732:-71733 Msa1419930:CDS
AAGACAAGAACAAAGATTGA+GGG 0.540178 tig0024732:+71834 None:intergenic
AAAGACATAGAGAGGTATCA+TGG 0.543623 tig0024732:-71765 Msa1419930:exon
ACTTGTTGTTAGGGCATCTG+AGG 0.546313 tig0024732:-71603 Msa1419930:CDS
TGGTCCCAAAAGAGGTGCTA+AGG 0.552862 tig0024732:-71519 Msa1419930:intron
TGTTGTTAGGGCATCTGAGG+AGG 0.552889 tig0024732:-71600 Msa1419930:CDS
GCTGCCTCACCTTCAACAGT+TGG 0.556449 tig0024732:+71566 None:intergenic
TAATACTCGCTACCCAGTTG+TGG 0.602018 tig0024732:-70944 Msa1419930:CDS
GTATATAATGTGTCATCAAG+AGG 0.613761 tig0024732:+70731 None:intergenic
TGTTGAATCTTACCACAACT+GGG 0.616418 tig0024732:+70932 None:intergenic
AACACCAACTGTTGAAGGTG+AGG 0.628187 tig0024732:-71570 Msa1419930:CDS
ATTAGCATCTAGAATGAACA+TGG 0.637216 tig0024732:-71663 Msa1419930:CDS
AGACAAGAACAAAGATTGAG+GGG 0.639133 tig0024732:+71835 None:intergenic
TTATCAACAAAGACATAGAG+AGG 0.643873 tig0024732:-71773 Msa1419930:five_prime_UTR
TTTGTTGATAATCTAAAGTG+TGG 0.659699 tig0024732:+71785 None:intergenic
ACCAATACCATTGAACCAGT+AGG 0.681839 tig0024732:+71085 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATTTAAATTATAAAGA+GGG + tig0024732:71838-71857 None:intergenic 10.0%
!! TATTCATTTAAATTATAAAG+AGG + tig0024732:71839-71858 None:intergenic 10.0%
!! ATTCATTTAAATTATAAAGA+GGG + tig0024732:71838-71857 None:intergenic 10.0%
!! TATTCATTTAAATTATAAAG+AGG + tig0024732:71839-71858 None:intergenic 10.0%
!! AATTAAAGTATACTTTCATA+CGG + tig0024732:71044-71063 None:intergenic 15.0%
!!! GTAGTTTTTTTTTAGAAATA+TGG - tig0024732:71065-71084 Msa1419930:CDS 15.0%
!!! TTTTTTTAGAAATATGGAAT+TGG - tig0024732:71071-71090 Msa1419930:CDS 15.0%
!!! TTTTTTAGAAATATGGAATT+GGG - tig0024732:71072-71091 Msa1419930:CDS 15.0%
!!! CTAAGTTTTATTTATTTTGT+TGG - tig0024732:71350-71369 Msa1419930:intron 15.0%
!! TTCATTTAAATTATAAAGAG+GGG + tig0024732:71837-71856 None:intergenic 15.0%
!! AATTAAAGTATACTTTCATA+CGG + tig0024732:71044-71063 None:intergenic 15.0%
!!! GTAGTTTTTTTTTAGAAATA+TGG - tig0024732:71065-71084 Msa1419930:CDS 15.0%
!!! TTTTTTTAGAAATATGGAAT+TGG - tig0024732:71071-71090 Msa1419930:CDS 15.0%
!!! TTTTTTAGAAATATGGAATT+GGG - tig0024732:71072-71091 Msa1419930:CDS 15.0%
!!! CTAAGTTTTATTTATTTTGT+TGG - tig0024732:71350-71369 Msa1419930:intron 15.0%
!! TTCATTTAAATTATAAAGAG+GGG + tig0024732:71837-71856 None:intergenic 15.0%
!!! GAACTAAATTTTGTTTGTTT+AGG + tig0024732:70630-70649 None:intergenic 20.0%
!! TTCTTACTAGAAAAAACTAA+GGG + tig0024732:71107-71126 None:intergenic 20.0%
!! ATTCTTACTAGAAAAAACTA+AGG + tig0024732:71108-71127 None:intergenic 20.0%
!!! GTTTTTTCTAGTAAGAATTA+TGG - tig0024732:71110-71129 Msa1419930:CDS 20.0%
!! AATTTCCAAATTACAAACTA+GGG + tig0024732:71136-71155 None:intergenic 20.0%
!! ATTATAAACTGATAGTAACT+TGG - tig0024732:71277-71296 Msa1419930:intron 20.0%
!!! TGTTTTTCCTACTAAATTAT+TGG + tig0024732:71318-71337 None:intergenic 20.0%
!! TTAAGTATTATCTGTTTATG+AGG + tig0024732:71801-71820 None:intergenic 20.0%
!!! GAACTAAATTTTGTTTGTTT+AGG + tig0024732:70630-70649 None:intergenic 20.0%
!! TTCTTACTAGAAAAAACTAA+GGG + tig0024732:71107-71126 None:intergenic 20.0%
!! ATTCTTACTAGAAAAAACTA+AGG + tig0024732:71108-71127 None:intergenic 20.0%
!!! GTTTTTTCTAGTAAGAATTA+TGG - tig0024732:71110-71129 Msa1419930:CDS 20.0%
!! AATTTCCAAATTACAAACTA+GGG + tig0024732:71136-71155 None:intergenic 20.0%
!! ATTATAAACTGATAGTAACT+TGG - tig0024732:71277-71296 Msa1419930:intron 20.0%
!!! TGTTTTTCCTACTAAATTAT+TGG + tig0024732:71318-71337 None:intergenic 20.0%
!! TTAAGTATTATCTGTTTATG+AGG + tig0024732:71801-71820 None:intergenic 20.0%
!!! TTTGTTGATAATCTAAAGTG+TGG + tig0024732:70711-70730 None:intergenic 25.0%
! TTCATACGGCATAATTTATT+TGG + tig0024732:71030-71049 None:intergenic 25.0%
! CAATTTCCAAATTACAAACT+AGG + tig0024732:71137-71156 None:intergenic 25.0%
!! CTAGTTTGTAATTTGGAAAT+TGG - tig0024732:71135-71154 Msa1419930:intron 25.0%
! TTGTCAACCAATAATTTAGT+AGG - tig0024732:71308-71327 Msa1419930:intron 25.0%
!!! TAATTCAAGTTGCTAGATTA+AGG - tig0024732:71676-71695 Msa1419930:CDS 25.0%
! ACATTACTGCTATCAATTTA+AGG - tig0024732:71866-71885 Msa1419930:five_prime_UTR 25.0%
! CATTACTGCTATCAATTTAA+GGG - tig0024732:71867-71886 Msa1419930:five_prime_UTR 25.0%
!!! TTTGTTGATAATCTAAAGTG+TGG + tig0024732:70711-70730 None:intergenic 25.0%
! TTCATACGGCATAATTTATT+TGG + tig0024732:71030-71049 None:intergenic 25.0%
! CAATTTCCAAATTACAAACT+AGG + tig0024732:71137-71156 None:intergenic 25.0%
!! CTAGTTTGTAATTTGGAAAT+TGG - tig0024732:71135-71154 Msa1419930:intron 25.0%
! TTGTCAACCAATAATTTAGT+AGG - tig0024732:71308-71327 Msa1419930:intron 25.0%
!!! TAATTCAAGTTGCTAGATTA+AGG - tig0024732:71676-71695 Msa1419930:CDS 25.0%
! ACATTACTGCTATCAATTTA+AGG - tig0024732:71866-71885 Msa1419930:five_prime_UTR 25.0%
! CATTACTGCTATCAATTTAA+GGG - tig0024732:71867-71886 Msa1419930:five_prime_UTR 25.0%
AAGACAAGAACAAAGATTGA+GGG + tig0024732:70662-70681 None:intergenic 30.0%
AAAGACAAGAACAAAGATTG+AGG + tig0024732:70663-70682 None:intergenic 30.0%
TTATCAACAAAGACATAGAG+AGG - tig0024732:70720-70739 Msa1419930:three_prime_UTR 30.0%
TTGTCACCTAATAATGTTTC+AGG - tig0024732:70789-70808 Msa1419930:three_prime_UTR 30.0%
! ATTAGCATCTAGAATGAACA+TGG - tig0024732:70830-70849 Msa1419930:three_prime_UTR 30.0%
!! CAATTCTAGACTTGTTGTTA+GGG - tig0024732:70881-70900 Msa1419930:CDS 30.0%
GAAATATGGAATTGGGAAAA+TGG - tig0024732:71079-71098 Msa1419930:CDS 30.0%
!!! TTTTGTTGGTTCTACTTAAC+AGG - tig0024732:71364-71383 Msa1419930:intron 30.0%
TTCTTAGAAAAGAATCCTAC+TGG - tig0024732:71393-71412 Msa1419930:intron 30.0%
!!! CACATGATTGATTTTGAAGT+AGG + tig0024732:71467-71486 None:intergenic 30.0%
CTACTTCAAAATCAATCATG+TGG - tig0024732:71465-71484 Msa1419930:intron 30.0%
! TTCCTTTTATTGTGTTGTGT+AGG - tig0024732:71522-71541 Msa1419930:CDS 30.0%
ATCCTACACAACACAATAAA+AGG + tig0024732:71527-71546 None:intergenic 30.0%
ATCAACAAACAACTATGCTT+TGG - tig0024732:71603-71622 Msa1419930:CDS 30.0%
GTATATAATGTGTCATCAAG+AGG + tig0024732:71765-71784 None:intergenic 30.0%
AAGACAAGAACAAAGATTGA+GGG + tig0024732:70662-70681 None:intergenic 30.0%
AAAGACAAGAACAAAGATTG+AGG + tig0024732:70663-70682 None:intergenic 30.0%
TTATCAACAAAGACATAGAG+AGG - tig0024732:70720-70739 Msa1419930:three_prime_UTR 30.0%
TTGTCACCTAATAATGTTTC+AGG - tig0024732:70789-70808 Msa1419930:three_prime_UTR 30.0%
! ATTAGCATCTAGAATGAACA+TGG - tig0024732:70830-70849 Msa1419930:three_prime_UTR 30.0%
!! CAATTCTAGACTTGTTGTTA+GGG - tig0024732:70881-70900 Msa1419930:CDS 30.0%
GAAATATGGAATTGGGAAAA+TGG - tig0024732:71079-71098 Msa1419930:CDS 30.0%
!!! TTTTGTTGGTTCTACTTAAC+AGG - tig0024732:71364-71383 Msa1419930:intron 30.0%
TTCTTAGAAAAGAATCCTAC+TGG - tig0024732:71393-71412 Msa1419930:intron 30.0%
!!! CACATGATTGATTTTGAAGT+AGG + tig0024732:71467-71486 None:intergenic 30.0%
CTACTTCAAAATCAATCATG+TGG - tig0024732:71465-71484 Msa1419930:intron 30.0%
! TTCCTTTTATTGTGTTGTGT+AGG - tig0024732:71522-71541 Msa1419930:CDS 30.0%
ATCCTACACAACACAATAAA+AGG + tig0024732:71527-71546 None:intergenic 30.0%
ATCAACAAACAACTATGCTT+TGG - tig0024732:71603-71622 Msa1419930:CDS 30.0%
GTATATAATGTGTCATCAAG+AGG + tig0024732:71765-71784 None:intergenic 30.0%
AGACAAGAACAAAGATTGAG+GGG + tig0024732:70661-70680 None:intergenic 35.0%
!! AAAGACATAGAGAGGTATCA+TGG - tig0024732:70728-70747 Msa1419930:three_prime_UTR 35.0%
GTGTTGCCTGAAACATTATT+AGG + tig0024732:70798-70817 None:intergenic 35.0%
TGGTGTTCTTTGTAGTAGTA+GGG + tig0024732:70863-70882 None:intergenic 35.0%
! TTGGTGTTCTTTGTAGTAGT+AGG + tig0024732:70864-70883 None:intergenic 35.0%
! CCTAACAACAAGTCTAGAAT+TGG + tig0024732:70883-70902 None:intergenic 35.0%
!! CCAATTCTAGACTTGTTGTT+AGG - tig0024732:70880-70899 Msa1419930:CDS 35.0%
! TATGGCCCTAGTTTGTAATT+TGG - tig0024732:71128-71147 Msa1419930:intron 35.0%
! TGGTTCTACTTAACAGGTTA+AGG - tig0024732:71370-71389 Msa1419930:intron 35.0%
!! AAAGAATCCTACTGGTTCAA+TGG - tig0024732:71401-71420 Msa1419930:intron 35.0%
TGTTGAATCTTACCACAACT+GGG + tig0024732:71564-71583 None:intergenic 35.0%
TTGTTGAATCTTACCACAAC+TGG + tig0024732:71565-71584 None:intergenic 35.0%
AGACAAGAACAAAGATTGAG+GGG + tig0024732:70661-70680 None:intergenic 35.0%
!! AAAGACATAGAGAGGTATCA+TGG - tig0024732:70728-70747 Msa1419930:three_prime_UTR 35.0%
GTGTTGCCTGAAACATTATT+AGG + tig0024732:70798-70817 None:intergenic 35.0%
TGGTGTTCTTTGTAGTAGTA+GGG + tig0024732:70863-70882 None:intergenic 35.0%
! TTGGTGTTCTTTGTAGTAGT+AGG + tig0024732:70864-70883 None:intergenic 35.0%
! CCTAACAACAAGTCTAGAAT+TGG + tig0024732:70883-70902 None:intergenic 35.0%
!! CCAATTCTAGACTTGTTGTT+AGG - tig0024732:70880-70899 Msa1419930:CDS 35.0%
! TATGGCCCTAGTTTGTAATT+TGG - tig0024732:71128-71147 Msa1419930:intron 35.0%
! TGGTTCTACTTAACAGGTTA+AGG - tig0024732:71370-71389 Msa1419930:intron 35.0%
!! AAAGAATCCTACTGGTTCAA+TGG - tig0024732:71401-71420 Msa1419930:intron 35.0%
TGTTGAATCTTACCACAACT+GGG + tig0024732:71564-71583 None:intergenic 35.0%
TTGTTGAATCTTACCACAAC+TGG + tig0024732:71565-71584 None:intergenic 35.0%
!! TCCTACTGGTTCAATGGTAT+TGG - tig0024732:71407-71426 Msa1419930:intron 40.0%
ACCAATACCATTGAACCAGT+AGG + tig0024732:71411-71430 None:intergenic 40.0%
! TTCTGTTGTTGCTGTTGATC+AGG - tig0024732:71430-71449 Msa1419930:intron 40.0%
! CTATGCTTTGGATGAGATTG+AGG - tig0024732:71615-71634 Msa1419930:CDS 40.0%
TGTGTCATCAAGAGGTAGAA+TGG + tig0024732:71757-71776 None:intergenic 40.0%
!! TCCTACTGGTTCAATGGTAT+TGG - tig0024732:71407-71426 Msa1419930:intron 40.0%
ACCAATACCATTGAACCAGT+AGG + tig0024732:71411-71430 None:intergenic 40.0%
! TTCTGTTGTTGCTGTTGATC+AGG - tig0024732:71430-71449 Msa1419930:intron 40.0%
! CTATGCTTTGGATGAGATTG+AGG - tig0024732:71615-71634 Msa1419930:CDS 40.0%
TGTGTCATCAAGAGGTAGAA+TGG + tig0024732:71757-71776 None:intergenic 40.0%
AACATAGCATCAGCAGCTTC+AGG - tig0024732:70759-70778 Msa1419930:three_prime_UTR 45.0%
ACATAGCATCAGCAGCTTCA+GGG - tig0024732:70760-70779 Msa1419930:three_prime_UTR 45.0%
!! ACTTGTTGTTAGGGCATCTG+AGG - tig0024732:70890-70909 Msa1419930:CDS 45.0%
AACACCAACTGTTGAAGGTG+AGG - tig0024732:70923-70942 Msa1419930:CDS 45.0%
! ATTGGTGGGGGCTTGATTTT+TGG + tig0024732:70954-70973 None:intergenic 45.0%
AAAATCAAGCCCCCACCAAT+TGG - tig0024732:70954-70973 Msa1419930:intron 45.0%
!!! TCTTTTGGGACCAATTGGTG+GGG + tig0024732:70967-70986 None:intergenic 45.0%
!!! CTCTTTTGGGACCAATTGGT+GGG + tig0024732:70968-70987 None:intergenic 45.0%
! CACACCTTAGCACCTCTTTT+GGG + tig0024732:70981-71000 None:intergenic 45.0%
! ACACACCTTAGCACCTCTTT+TGG + tig0024732:70982-71001 None:intergenic 45.0%
ACAACTGGGTAGCGAGTATT+AGG + tig0024732:71550-71569 None:intergenic 45.0%
TAATACTCGCTACCCAGTTG+TGG - tig0024732:71549-71568 Msa1419930:CDS 45.0%
AACATAGCATCAGCAGCTTC+AGG - tig0024732:70759-70778 Msa1419930:three_prime_UTR 45.0%
ACATAGCATCAGCAGCTTCA+GGG - tig0024732:70760-70779 Msa1419930:three_prime_UTR 45.0%
!! ACTTGTTGTTAGGGCATCTG+AGG - tig0024732:70890-70909 Msa1419930:CDS 45.0%
AACACCAACTGTTGAAGGTG+AGG - tig0024732:70923-70942 Msa1419930:CDS 45.0%
! ATTGGTGGGGGCTTGATTTT+TGG + tig0024732:70954-70973 None:intergenic 45.0%
AAAATCAAGCCCCCACCAAT+TGG - tig0024732:70954-70973 Msa1419930:intron 45.0%
!!! TCTTTTGGGACCAATTGGTG+GGG + tig0024732:70967-70986 None:intergenic 45.0%
!!! CTCTTTTGGGACCAATTGGT+GGG + tig0024732:70968-70987 None:intergenic 45.0%
! CACACCTTAGCACCTCTTTT+GGG + tig0024732:70981-71000 None:intergenic 45.0%
! ACACACCTTAGCACCTCTTT+TGG + tig0024732:70982-71001 None:intergenic 45.0%
ACAACTGGGTAGCGAGTATT+AGG + tig0024732:71550-71569 None:intergenic 45.0%
TAATACTCGCTACCCAGTTG+TGG - tig0024732:71549-71568 Msa1419930:CDS 45.0%
!! ATTATCATATAAATTAAAAA+GGG + tig0024732:71180-71199 None:intergenic 5.0%
!! AATTATCATATAAATTAAAA+AGG + tig0024732:71181-71200 None:intergenic 5.0%
!! ATTATCATATAAATTAAAAA+GGG + tig0024732:71180-71199 None:intergenic 5.0%
!! AATTATCATATAAATTAAAA+AGG + tig0024732:71181-71200 None:intergenic 5.0%
! TGTTGTTAGGGCATCTGAGG+AGG - tig0024732:70893-70912 Msa1419930:CDS 50.0%
GCTGCAACACCAACTGTTGA+AGG - tig0024732:70918-70937 Msa1419930:CDS 50.0%
!!! CTTTTGGGACCAATTGGTGG+GGG + tig0024732:70966-70985 None:intergenic 50.0%
!!! CCTCTTTTGGGACCAATTGG+TGG + tig0024732:70969-70988 None:intergenic 50.0%
CCACCAATTGGTCCCAAAAG+AGG - tig0024732:70966-70985 Msa1419930:intron 50.0%
!!! GCACCTCTTTTGGGACCAAT+TGG + tig0024732:70972-70991 None:intergenic 50.0%
!! TGGTCCCAAAAGAGGTGCTA+AGG - tig0024732:70974-70993 Msa1419930:intron 50.0%
! TGTTGTTAGGGCATCTGAGG+AGG - tig0024732:70893-70912 Msa1419930:CDS 50.0%
GCTGCAACACCAACTGTTGA+AGG - tig0024732:70918-70937 Msa1419930:CDS 50.0%
!!! CTTTTGGGACCAATTGGTGG+GGG + tig0024732:70966-70985 None:intergenic 50.0%
!!! CCTCTTTTGGGACCAATTGG+TGG + tig0024732:70969-70988 None:intergenic 50.0%
CCACCAATTGGTCCCAAAAG+AGG - tig0024732:70966-70985 Msa1419930:intron 50.0%
!!! GCACCTCTTTTGGGACCAAT+TGG + tig0024732:70972-70991 None:intergenic 50.0%
!! TGGTCCCAAAAGAGGTGCTA+AGG - tig0024732:70974-70993 Msa1419930:intron 50.0%
GCTGCCTCACCTTCAACAGT+TGG + tig0024732:70930-70949 None:intergenic 55.0%
GCTGCCTCACCTTCAACAGT+TGG + tig0024732:70930-70949 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0024732 gene 70615 71900 70615 ID=Msa1419930;Name=Msa1419930
tig0024732 mRNA 70615 71900 70615 ID=Msa1419930-mRNA-1;Parent=Msa1419930;Name=Msa1419930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|3|252|139
tig0024732 exon 70615 70971 70615 ID=Msa1419930-mRNA-1:exon:1183;Parent=Msa1419930-mRNA-1
tig0024732 exon 71064 71129 71064 ID=Msa1419930-mRNA-1:exon:1182;Parent=Msa1419930-mRNA-1
tig0024732 exon 71520 71900 71520 ID=Msa1419930-mRNA-1:exon:1181;Parent=Msa1419930-mRNA-1
tig0024732 five_prime_UTR 71769 71900 71769 ID=Msa1419930-mRNA-1:five_prime_utr;Parent=Msa1419930-mRNA-1
tig0024732 CDS 71520 71768 71520 ID=Msa1419930-mRNA-1:cds;Parent=Msa1419930-mRNA-1
tig0024732 CDS 71064 71129 71064 ID=Msa1419930-mRNA-1:cds;Parent=Msa1419930-mRNA-1
tig0024732 CDS 70867 70971 70867 ID=Msa1419930-mRNA-1:cds;Parent=Msa1419930-mRNA-1
tig0024732 three_prime_UTR 70615 70866 70615 ID=Msa1419930-mRNA-1:three_prime_utr;Parent=Msa1419930-mRNA-1
Gene Sequence

>Msa1419930

ATGGCTAGTTGCAACATAGCATCAGCAGCTTCAGGGTTTGTGTTGTCACCTAATAATGTTTCAGGCAACACAAACACTAATTTATTAGCATCTAGAATGAACATGGTGATGTACCCTACTACTACAAAGAACACCAATTCTAGACTTGTTGTTAGGGCATCTGAGGAGGCTGCTGCAACACCAACTGTTGAAGGTGAGGCAGCTCCAAAAATCAAGCCCCCACCAATTGGTCCCAAAAGAGGTGCTAAGGTTAAGGTTCTTAGAAAAGAATCCTACTGGTTCAATGGTATTGGTTCTGTTGTTGCTGTTGATCAGGATCCTAATACTCGCTACCCAGTTGTGGTAAGATTCAACAAAGTTAACTATGCAAATGTATCAACAAACAACTATGCTTTGGATGAGATTGAGGAAGTCAAATGA

Protein sequence

>Msa1419930

MASCNIASAASGFVLSPNNVSGNTNTNLLASRMNMVMYPTTTKNTNSRLVVRASEEAAATPTVEGEAAPKIKPPPIGPKRGAKVKVLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK*