AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142000 MtrunA17_Chr1g0158881 91.233 787 10 4 1 737 1 778 0.0 1427
Msa0142000 MtrunA17_Chr3g0135761 49.273 619 215 13 179 730 79 665 0.0 540
Msa0142000 MtrunA17_Chr3g0135721 47.040 642 234 11 166 733 66 675 0.0 538
Msa0142000 MtrunA17_Chr5g0432631 54.792 480 147 7 291 713 195 661 9.52e-165 497
Msa0142000 MtrunA17_Chr8g0362771 53.092 469 156 6 325 733 225 689 1.20e-161 484
Msa0142000 MtrunA17_Chr5g0432641 51.584 442 158 4 328 713 182 623 9.17e-138 420
Msa0142000 MtrunA17_Chr7g0217421 53.351 373 166 4 328 694 32 402 2.86e-126 382
Msa0142000 MtrunA17_Chr2g0297281 55.932 354 151 2 337 686 287 639 4.85e-124 387
Msa0142000 MtrunA17_Chr4g0052411 55.650 354 152 2 337 686 230 582 8.80e-124 385
Msa0142000 MtrunA17_Chr3g0143721 54.496 367 159 3 330 689 244 609 1.15e-122 383
Msa0142000 MtrunA17_Chr7g0248361 48.603 358 173 4 333 682 189 543 9.44e-106 337
Msa0142000 MtrunA17_Chr6g0476861 44.961 387 192 5 306 682 173 548 3.02e-104 334
Msa0142000 MtrunA17_Chr7g0260601 46.253 387 188 7 307 682 214 591 1.31e-102 330
Msa0142000 MtrunA17_Chr4g0031821 44.471 425 218 8 269 682 254 671 1.53e-99 325
Msa0142000 MtrunA17_Chr5g0429571 49.311 363 164 9 337 683 314 672 8.94e-95 311
Msa0142000 MtrunA17_Chr3g0104211 48.199 361 171 7 337 683 305 663 7.12e-94 309
Msa0142000 MtrunA17_Chr5g0432391 48.179 357 130 5 332 686 49 352 9.30e-94 298
Msa0142000 MtrunA17_Chr3g0094871 45.739 352 167 6 338 682 13 347 1.06e-92 296
Msa0142000 MtrunA17_Chr8g0388371 43.478 368 184 7 338 684 406 770 5.81e-80 274
Msa0142000 MtrunA17_Chr1g0168321 41.341 358 162 5 333 682 161 478 7.17e-80 264
Msa0142000 MtrunA17_Chr2g0331161 44.253 348 171 8 338 670 417 756 1.44e-74 259
Msa0142000 MtrunA17_Chr6g0456351 49.259 270 134 2 327 593 308 577 5.18e-71 243
Msa0142000 MtrunA17_Chr3g0135791 45.914 257 81 2 524 727 7 258 2.63e-67 224
Msa0142000 MtrunA17_Chr3g0135781 60.440 182 63 3 313 493 40 213 4.03e-65 215
Msa0142000 MtrunA17_Chr3g0129971 37.940 369 214 6 332 686 292 659 1.04e-54 202
Msa0142000 MtrunA17_Chr3g0135741 60.448 134 53 0 524 657 5 138 6.57e-53 179
Msa0142000 MtrunA17_Chr1g0180791 40.856 257 143 4 311 562 457 709 1.13e-50 190
Msa0142000 MtrunA17_Chr1g0180791 42.601 223 126 2 338 558 207 429 1.15e-44 172
Msa0142000 MtrunA17_Chr8g0357301 32.461 382 210 7 339 686 473 840 1.34e-50 191
Msa0142000 MtrunA17_Chr2g0327121 40.625 256 143 4 312 562 460 711 6.25e-50 187
Msa0142000 MtrunA17_Chr2g0327121 42.601 223 126 2 338 558 209 431 4.43e-45 173
Msa0142000 MtrunA17_Chr1g0192151 43.578 218 118 2 332 544 163 380 2.22e-49 179
Msa0142000 MtrunA17_Chr4g0014731 43.578 218 118 2 332 544 164 381 3.38e-49 178
Msa0142000 MtrunA17_Chr3g0141901 43.111 225 121 3 337 555 137 360 3.44e-49 178
Msa0142000 MtrunA17_Chr7g0264521 39.689 257 146 4 311 562 458 710 4.67e-49 185
Msa0142000 MtrunA17_Chr7g0264521 42.152 223 127 2 338 558 208 430 3.18e-44 171
Msa0142000 MtrunA17_Chr3g0145011 42.667 225 122 3 337 555 140 363 8.17e-49 177
Msa0142000 MtrunA17_Chr4g0050561 38.976 254 149 2 337 584 157 410 1.22e-48 177
Msa0142000 MtrunA17_Chr8g0345461 36.863 255 156 2 332 581 161 415 1.71e-47 174
Msa0142000 MtrunA17_Chr7g0255651 42.918 233 117 4 337 557 283 511 6.24e-47 176
Msa0142000 MtrunA17_Chr7g0255651 30.841 214 135 5 355 557 29 240 2.16e-19 92.8
Msa0142000 MtrunA17_Chr1g0182711 37.600 250 147 3 335 577 187 434 5.23e-46 170
Msa0142000 MtrunA17_Chr7g0262801 37.600 250 147 3 335 577 186 433 5.82e-46 170
Msa0142000 MtrunA17_Chr1g0200081 36.471 255 156 3 332 581 171 424 2.49e-45 168
Msa0142000 MtrunA17_Chr3g0108321 43.979 191 98 3 332 515 155 343 4.06e-43 160
Msa0142000 MtrunA17_Chr2g0277831 41.593 226 127 4 334 555 532 756 5.78e-43 167
Msa0142000 MtrunA17_Chr2g0277831 43.636 220 119 2 338 552 245 464 2.65e-41 162
Msa0142000 MtrunA17_Chr7g0255721 39.516 248 146 3 327 570 676 923 4.83e-42 164
Msa0142000 MtrunA17_Chr7g0255721 38.318 214 129 3 351 562 401 613 2.57e-31 131
Msa0142000 MtrunA17_Chr7g0255691 40.948 232 129 3 337 560 287 518 9.04e-41 157
Msa0142000 MtrunA17_Chr7g0255691 36.681 229 129 6 341 558 22 245 1.76e-27 117
Msa0142000 MtrunA17_Chr3g0086411 37.586 290 146 10 331 599 211 486 8.23e-39 150
Msa0142000 MtrunA17_Chr3g0086411 38.728 173 76 5 423 583 7 161 1.05e-20 96.3
Msa0142000 MtrunA17_Chr7g0255641 37.097 248 152 3 327 570 649 896 4.93e-38 152
Msa0142000 MtrunA17_Chr7g0255641 39.512 205 114 6 351 551 411 609 1.65e-29 125
Msa0142000 MtrunA17_Chr4g0026631 40.773 233 122 10 325 548 116 341 1.09e-37 146
Msa0142000 MtrunA17_Chr2g0316851 38.197 233 134 5 332 555 590 821 5.83e-37 149
Msa0142000 MtrunA17_Chr8g0387641 38.934 244 137 7 323 558 507 746 1.80e-36 147
Msa0142000 MtrunA17_Chr4g0043381 34.866 261 164 4 338 592 839 1099 2.87e-36 147
Msa0142000 MtrunA17_Chr3g0086401 37.860 243 129 5 338 558 387 629 1.05e-35 144
Msa0142000 MtrunA17_Chr3g0086401 37.555 229 128 5 332 548 88 313 4.84e-32 132
Msa0142000 MtrunA17_Chr2g0321241 39.914 233 124 10 325 548 121 346 1.05e-35 140
Msa0142000 MtrunA17_Chr6g0462581 40.164 244 133 8 323 558 486 724 1.61e-35 144
Msa0142000 MtrunA17_Chr1g0202381 38.819 237 135 7 325 554 456 689 1.61e-35 144
Msa0142000 MtrunA17_Chr1g0190401 30.456 417 214 13 340 686 681 1091 7.68e-35 142
Msa0142000 MtrunA17_Chr1g0202371 37.815 238 139 7 323 554 383 617 2.44e-34 140
Msa0142000 MtrunA17_Chr5g0397121 36.641 262 149 8 310 558 481 738 7.49e-34 139
Msa0142000 MtrunA17_Chr1g0195741 38.912 239 133 7 323 552 924 1158 1.16e-33 139
Msa0142000 MtrunA17_Chr1g0204031 38.174 241 139 8 325 558 545 782 1.23e-33 138
Msa0142000 MtrunA17_Chr6g0459561 36.864 236 138 7 325 553 371 602 5.24e-33 135
Msa0142000 MtrunA17_Chr4g0004121 33.550 307 176 9 295 577 195 497 6.54e-33 134
Msa0142000 MtrunA17_Chr3g0116131 37.657 239 136 7 323 552 888 1122 9.64e-33 136
Msa0142000 MtrunA17_Chr1g0195731 36.820 239 138 7 323 552 920 1154 1.35e-32 135
Msa0142000 MtrunA17_Chr5g0432671 55.455 110 45 1 532 641 3 108 3.63e-32 120
Msa0142000 MtrunA17_Chr7g0255901 35.371 229 141 5 334 556 638 865 4.37e-32 134
Msa0142000 MtrunA17_Chr4g0033451 34.444 270 166 6 337 597 381 648 2.09e-31 132
Msa0142000 MtrunA17_Chr4g0052271 37.168 226 133 6 334 554 118 339 3.59e-31 126
Msa0142000 MtrunA17_Chr2g0327231 40.828 169 92 4 327 490 340 505 4.13e-31 128
Msa0142000 MtrunA17_Chr4g0038101 37.004 227 135 5 338 558 723 947 5.65e-31 130
Msa0142000 MtrunA17_Chr3g0127431 37.387 222 128 6 338 552 86 303 6.12e-29 120
Msa0142000 MtrunA17_Chr3g0127401 33.091 275 160 8 338 595 83 350 5.86e-28 116
Msa0142000 MtrunA17_Chr6g0459541 30.435 276 148 9 323 562 29 296 4.35e-27 113
Msa0142000 MtrunA17_Chr7g0246111 36.199 221 133 6 338 553 214 431 1.71e-26 114
Msa0142000 MtrunA17_Chr6g0459551 35.678 199 119 7 318 513 84 276 1.10e-24 107
Msa0142000 MtrunA17_Chr2g0289231 30.888 259 157 6 298 545 268 515 2.88e-23 104
Msa0142000 MtrunA17_Chr4g0047411 33.493 209 121 5 361 552 202 409 1.84e-21 99.8
Msa0142000 MtrunA17_Chr8g0392971 38.144 97 59 1 541 636 51 147 5.97e-14 70.1
Msa0142000 MtrunA17_Chr5g0432681 44.000 100 25 2 645 713 1 100 1.26e-12 67.0
Msa0142000 MtrunA17_Chr4g0039781 28.761 226 126 8 373 570 370 588 5.33e-12 69.3
Msa0142000 MtrunA17_Chr4g0062081 41.558 77 43 2 340 414 11 87 4.19e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142000 AT5G53170.1 71.278 759 148 7 42 737 55 806 0.0 1022
Msa0142000 AT2G26140.1 49.035 622 212 10 177 726 80 668 0.0 550
Msa0142000 AT5G15250.1 55.932 354 151 2 337 686 222 574 2.35e-126 392
Msa0142000 AT1G06430.1 55.932 354 151 2 337 686 218 570 2.37e-123 384
Msa0142000 AT1G06430.3 55.932 354 151 2 337 686 218 570 2.37e-123 384
Msa0142000 AT1G06430.2 55.932 354 151 2 337 686 218 570 2.37e-123 384
Msa0142000 AT2G30950.1 55.367 354 153 2 337 686 225 577 4.13e-122 381
Msa0142000 AT2G30950.2 55.367 354 153 2 337 686 225 577 4.13e-122 381
Msa0142000 AT2G30950.3 55.367 354 153 2 337 686 225 577 4.13e-122 381
Msa0142000 AT2G30950.4 55.367 354 153 2 337 686 229 581 6.62e-122 381
Msa0142000 AT5G42270.1 53.678 367 162 3 330 689 242 607 2.71e-121 379
Msa0142000 AT1G50250.1 53.406 367 163 3 330 689 254 619 2.82e-120 377
Msa0142000 AT2G29080.1 48.889 360 168 6 333 682 316 669 1.85e-101 330
Msa0142000 AT1G07510.1 48.199 361 170 7 333 682 321 675 3.26e-101 330
Msa0142000 AT3G47060.1 48.901 364 164 10 337 683 323 681 4.52e-95 313
Msa0142000 AT5G58870.1 48.209 363 168 9 337 683 327 685 1.49e-94 311
Msa0142000 AT5G15250.2 54.422 294 106 4 337 603 222 514 3.48e-94 303
Msa0142000 AT4G23940.1 44.293 368 181 8 338 684 429 793 9.42e-80 275
Msa0142000 AT3G16290.1 43.605 344 179 5 338 670 409 748 1.25e-75 262
Msa0142000 AT3G02450.1 51.210 248 118 2 338 582 333 580 1.90e-71 245
Msa0142000 AT5G64580.1 35.076 459 257 13 266 686 221 676 7.53e-56 206
Msa0142000 AT3G05530.1 44.495 218 116 2 332 544 164 381 4.30e-50 181
Msa0142000 AT1G79560.2 30.809 383 217 7 338 686 492 860 4.54e-49 187
Msa0142000 AT1G45000.1 43.556 225 120 3 337 555 137 360 4.75e-49 178
Msa0142000 AT1G79560.3 30.809 383 217 7 338 686 492 860 5.39e-49 186
Msa0142000 AT1G79560.1 30.809 383 217 8 338 686 492 860 5.82e-49 186
Msa0142000 AT3G53230.1 39.676 247 143 3 321 562 464 709 1.27e-48 184
Msa0142000 AT3G53230.1 41.704 223 128 2 338 558 207 429 8.08e-44 170
Msa0142000 AT5G19990.2 38.976 254 149 2 337 584 101 354 2.35e-48 175
Msa0142000 AT1G53780.3 37.354 257 152 4 332 581 332 586 4.18e-48 180
Msa0142000 AT1G53780.1 37.354 257 152 4 332 581 333 587 4.37e-48 180
Msa0142000 AT1G53780.4 37.354 257 152 4 332 581 333 587 4.37e-48 180
Msa0142000 AT5G43010.1 42.667 225 122 3 337 555 137 360 5.20e-48 175
Msa0142000 AT1G53780.2 37.354 257 152 4 332 581 354 608 5.62e-48 180
Msa0142000 AT5G19990.1 38.976 254 149 2 337 584 159 412 6.90e-48 175
Msa0142000 AT5G19990.3 38.976 254 149 2 337 584 159 412 6.90e-48 175
Msa0142000 AT5G20000.1 38.976 254 149 2 337 584 159 412 8.58e-48 175
Msa0142000 AT1G09100.1 43.119 218 119 2 332 544 163 380 9.65e-48 175
Msa0142000 AT5G03340.1 39.676 247 143 3 321 562 463 708 9.81e-48 181
Msa0142000 AT5G03340.1 42.152 223 127 2 338 558 206 428 2.68e-44 171
Msa0142000 AT1G53750.1 32.249 338 218 5 253 581 80 415 2.02e-47 174
Msa0142000 AT3G09840.1 39.919 248 142 3 321 562 463 709 1.51e-46 178
Msa0142000 AT3G09840.1 42.152 223 127 2 338 558 206 428 2.43e-44 171
Msa0142000 AT3G56690.1 41.423 239 136 3 327 561 712 950 4.37e-45 174
Msa0142000 AT3G56690.1 35.610 205 130 2 351 553 397 601 3.39e-33 137
Msa0142000 AT5G58290.1 35.587 281 165 4 282 555 105 376 1.44e-44 166
Msa0142000 AT2G20140.1 36.694 248 152 2 335 577 184 431 1.40e-43 164
Msa0142000 AT4G29040.1 36.000 250 151 3 335 577 184 431 1.41e-43 164
Msa0142000 AT3G01610.1 43.534 232 117 4 337 555 231 461 2.37e-40 159
Msa0142000 AT3G01610.1 41.071 224 128 4 338 558 527 749 5.34e-36 146
Msa0142000 AT3G01610.2 43.534 232 117 4 337 555 231 461 2.63e-40 159
Msa0142000 AT3G01610.2 41.071 224 128 4 338 558 527 749 5.59e-36 146
Msa0142000 AT2G03670.1 40.870 230 130 2 325 548 272 501 7.90e-40 155
Msa0142000 AT2G03670.1 31.579 247 161 3 340 578 23 269 2.71e-27 117
Msa0142000 AT1G64110.1 39.754 244 135 7 323 558 499 738 2.63e-37 150
Msa0142000 AT1G64110.5 39.754 244 135 7 323 558 502 741 3.21e-37 150
Msa0142000 AT1G64110.3 39.754 244 135 7 323 558 502 741 3.21e-37 150
Msa0142000 AT1G64110.2 39.754 244 135 7 323 558 504 743 3.28e-37 150
Msa0142000 AT1G64110.4 39.754 244 135 7 323 558 504 743 3.28e-37 150
Msa0142000 AT5G08470.1 37.611 226 133 3 338 558 843 1065 2.48e-36 147
Msa0142000 AT5G08470.3 37.611 226 133 3 338 558 834 1056 2.67e-36 147
Msa0142000 AT3G15120.1 39.224 232 131 5 333 555 713 943 4.09e-36 147
Msa0142000 AT3G15120.2 39.224 232 131 5 333 555 723 953 4.25e-36 147
Msa0142000 AT4G28000.3 38.525 244 137 8 323 558 503 741 9.84e-36 145
Msa0142000 AT4G28000.2 38.525 244 137 8 323 558 503 741 1.03e-35 145
Msa0142000 AT4G28000.1 38.525 244 137 8 323 558 501 739 1.06e-35 145
Msa0142000 AT2G27600.1 38.362 232 129 8 325 548 118 343 5.01e-35 139
Msa0142000 AT3G04340.1 39.423 208 116 4 338 536 783 989 4.38e-34 140
Msa0142000 AT1G05910.1 33.013 312 187 8 295 597 348 646 5.74e-34 140
Msa0142000 AT5G52882.1 38.115 244 138 8 323 558 500 738 7.87e-34 139
Msa0142000 AT1G03000.1 34.934 229 142 5 334 556 654 881 1.57e-33 139
Msa0142000 AT1G80350.1 35.379 277 157 8 295 553 189 461 2.79e-33 135
Msa0142000 AT4G02480.1 37.657 239 136 7 323 552 946 1180 4.03e-33 137
Msa0142000 AT1G02890.1 37.238 239 137 7 323 552 927 1161 6.24e-33 137
Msa0142000 AT2G34560.1 36.842 228 132 7 334 554 99 321 2.53e-32 130
Msa0142000 AT2G34560.2 36.842 228 132 7 334 554 108 330 3.39e-32 129
Msa0142000 AT2G45500.4 38.298 235 132 8 338 564 82 311 4.38e-32 128
Msa0142000 AT2G45500.3 38.298 235 132 8 338 564 82 311 4.38e-32 128
Msa0142000 AT3G27120.1 36.864 236 138 7 325 553 389 620 5.23e-32 133
Msa0142000 AT2G45500.1 38.298 235 132 8 338 564 219 448 3.97e-31 128
Msa0142000 AT2G45500.5 38.298 235 132 8 338 564 225 454 4.18e-31 128
Msa0142000 AT2G45500.2 38.298 235 132 8 338 564 215 444 4.23e-31 128
Msa0142000 AT1G50140.3 37.004 227 135 5 338 558 713 937 1.66e-30 129
Msa0142000 AT1G50140.1 37.004 227 135 5 338 558 713 937 1.66e-30 129
Msa0142000 AT1G50140.4 37.004 227 135 5 338 558 713 937 1.66e-30 129
Msa0142000 AT1G50140.2 37.004 227 135 5 338 558 691 915 1.67e-30 129
Msa0142000 AT1G50140.5 37.004 227 135 5 338 558 691 915 1.67e-30 129
Msa0142000 AT4G24860.3 35.366 246 147 6 325 562 804 1045 3.28e-30 128
Msa0142000 AT4G24860.1 35.366 246 147 6 325 562 806 1047 3.28e-30 128
Msa0142000 AT4G24860.4 35.366 246 147 6 325 562 779 1020 4.56e-30 128
Msa0142000 AT4G24860.2 35.366 246 147 6 325 562 802 1043 4.69e-30 128
Msa0142000 AT3G19740.1 36.564 227 136 5 338 558 703 927 3.02e-29 125
Msa0142000 AT2G03670.2 31.579 247 161 3 340 578 23 269 4.72e-28 118
Msa0142000 AT2G03670.2 38.816 152 87 2 325 470 272 423 2.09e-18 89.0
Msa0142000 AT5G53540.1 32.246 276 161 10 338 595 86 353 1.28e-26 113
Msa0142000 AT1G45000.2 44.286 140 71 3 337 470 137 275 1.47e-26 112
Msa0142000 AT1G62130.2 34.553 246 139 8 324 562 731 961 1.83e-26 116
Msa0142000 AT1G62130.1 34.553 246 139 8 324 562 738 968 2.14e-26 116
Msa0142000 AT4G04180.2 32.927 246 134 9 337 568 312 540 4.15e-26 114
Msa0142000 AT4G04180.1 32.927 246 134 9 337 568 317 545 4.95e-26 114
Msa0142000 AT4G27680.1 35.586 222 132 6 338 552 83 300 3.14e-25 109
Msa0142000 AT4G04910.1 34.615 208 118 5 361 551 239 445 3.15e-21 99.4
Msa0142000 AT1G02890.2 32.218 239 121 9 323 552 927 1133 1.86e-20 97.4
Msa0142000 AT5G08470.2 34.459 148 89 3 338 480 843 987 1.67e-18 91.3

Find 216 sgRNAs with CRISPR-Local

Find 648 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAAGACCGAATAATTA+TGG 0.162907 1_4:-781832 Msa0142000:CDS
CTGTACGTCTGTCAGGTTTA+TGG 0.212295 1_4:-785511 Msa0142000:intron
ACTTCCTTGTTTAGCTCCTT+TGG 0.240049 1_4:+785408 None:intergenic
CTTCCTTGTTTAGCTCCTTT+GGG 0.240432 1_4:+785409 None:intergenic
TGTATTACTGTACTAATTAT+AGG 0.249409 1_4:-779410 Msa0142000:three_prime_UTR
TCTTATCATAAGATGATTAT+AGG 0.256040 1_4:-779309 Msa0142000:three_prime_UTR
TGCTTTAATATCTACATTAT+CGG 0.257297 1_4:+782083 None:intergenic
TCTTCTTGTTCCTGTTGTTC+TGG 0.277378 1_4:+779478 None:intergenic
GAGGAATCTGGAAAACCTTC+TGG 0.290339 1_4:-787145 Msa0142000:CDS
CTGTTCATGCTCAGGTTTGT+TGG 0.298475 1_4:-782864 Msa0142000:intron
TCGGAGATAGGTTCGGGATT+AGG 0.299455 1_4:+788847 None:intergenic
CAGTTGAATTTAACGGTTCT+AGG 0.302745 1_4:+788812 None:intergenic
TTGGGTGGGATTGGTTCTTC+AGG 0.312707 1_4:-785456 Msa0142000:CDS
TTGGAGGCAGGAGAAGAAAT+TGG 0.328754 1_4:-788587 Msa0142000:CDS
TGTACGTCTGTCAGGTTTAT+GGG 0.331741 1_4:-785510 Msa0142000:intron
TGGTTGATTGGTGGCCGTTT+TGG 0.339106 1_4:-788606 Msa0142000:CDS
GTTGCAGAAGAACTTATCTT+TGG 0.341319 1_4:-780390 Msa0142000:CDS
TACGACGGCGCCAATTTCAT+TGG 0.341590 1_4:-789115 Msa0142000:five_prime_UTR
CGACCACGTACATCTGGATT+TGG 0.346610 1_4:+782147 None:intergenic
GTATTACTGTACTAATTATA+GGG 0.346984 1_4:-779409 Msa0142000:three_prime_UTR
GTAACCTTATCCAATGAAAT+TGG 0.349461 1_4:+789105 None:intergenic
GATGTGCACCGTCGGTATTA+AGG 0.351938 1_4:+780544 None:intergenic
ATGCCCCGTGGATCTGCTTT+AGG 0.353616 1_4:-780501 Msa0142000:CDS
TTTCAGGGGATTCTTCTGAC+TGG 0.361761 1_4:-784312 Msa0142000:intron
AGCTCGTCTTGATGTTTGTA+TGG 0.361815 1_4:-780421 Msa0142000:CDS
ATTCTTCTGACTGGGGCACC+TGG 0.362651 1_4:-784303 Msa0142000:CDS
GCAGCCGTTGCACGTGGTTA+TGG 0.373039 1_4:-785891 Msa0142000:intron
TATCTTCCTGATGAGGAATC+TGG 0.373257 1_4:-787157 Msa0142000:CDS
GCTCTGTACCCATAATTATT+CGG 0.373668 1_4:+781823 None:intergenic
GCAAAAGACCGAATAATTAT+GGG 0.375666 1_4:-781831 Msa0142000:CDS
TTCAGGGGATTCTTCTGACT+GGG 0.379915 1_4:-784311 Msa0142000:intron
AGTAGAACGAACTCAAACTA+TGG 0.380268 1_4:-789043 Msa0142000:exon
GCTGTAGGGAATAATATTAA+TGG 0.382293 1_4:-782482 Msa0142000:intron
GAATTTAACGGTTCTAGGTT+AGG 0.386512 1_4:+788817 None:intergenic
ACGTGGTCGGCAAGAAATAT+TGG 0.387425 1_4:-782133 Msa0142000:CDS
CTGACTGGGGCACCTGGAAC+TGG 0.388772 1_4:-784297 Msa0142000:CDS
TTAAGAAGAGTAGAGGGGTT+AGG 0.394457 1_4:+788967 None:intergenic
ATGATTGTTGCCTTGTGAAT+TGG 0.395594 1_4:+780522 None:intergenic
GGCTGCTTCTCAGATATTCC+AGG 0.398346 1_4:+785908 None:intergenic
GCACCAACTTCTTGTTGAAA+TGG 0.405004 1_4:-782593 Msa0142000:CDS
GAGTAGAGGGGTTAGGAATG+AGG 0.406531 1_4:+788974 None:intergenic
CAACTTCTTGTTGAAATGGA+TGG 0.407414 1_4:-782589 Msa0142000:CDS
GGCGCCAATTTCATTGGATA+AGG 0.409282 1_4:-789109 Msa0142000:five_prime_UTR
ATGCTCAGGTTTGTTGGAGT+TGG 0.412642 1_4:-782858 Msa0142000:intron
CGTGGTACCCCAGGATTCAA+TGG 0.413046 1_4:-782054 Msa0142000:CDS
CCGTAGCTGTTGGATTGGTC+TGG 0.413106 1_4:-785617 Msa0142000:intron
TCTTGCCGACCACGTACATC+TGG 0.413497 1_4:+782141 None:intergenic
GGGATTGGTTCTTCAGGTGT+TGG 0.413971 1_4:-785450 Msa0142000:CDS
CCAGCTAAATTTACTCGCCT+TGG 0.415935 1_4:-784742 Msa0142000:CDS
AAGTTGGTGCAATGTCTTCT+TGG 0.418332 1_4:+782606 None:intergenic
AGGGGTTAGGAATGAGGAAT+GGG 0.419576 1_4:+788980 None:intergenic
AGAGCTGGATCAAGAATATC+AGG 0.419594 1_4:+782445 None:intergenic
GAGTTGAAACAGCGGGCATC+TGG 0.423089 1_4:-785956 Msa0142000:CDS
CACCTGCCCCATTGAATCCT+GGG 0.423171 1_4:+782046 None:intergenic
TCGTGCCGGTTCGGAATTTG+AGG 0.426524 1_4:-784014 Msa0142000:CDS
ATCGGAAGCTTGGGTGGGAT+TGG 0.428528 1_4:-785465 Msa0142000:CDS
TATTGATGTCTCATCATTTG+AGG 0.429070 1_4:+780461 None:intergenic
ATGTGCACCGTCGGTATTAA+GGG 0.434842 1_4:+780545 None:intergenic
TCACCTGCCCCATTGAATCC+TGG 0.435358 1_4:+782045 None:intergenic
GCTATTAAAGCTGCGGTTGA+AGG 0.440549 1_4:-781888 Msa0142000:CDS
GGGACCTTGAAGGCTATTGC+TGG 0.440814 1_4:-784061 Msa0142000:intron
ACGATTACTTCTCCCGTATC+GGG 0.444184 1_4:-779512 Msa0142000:CDS
GAGTGAAGGGAACGCGCGGG+TGG 0.445306 1_4:+788917 None:intergenic
AGTGCAGAGAAGGGGAGTGA+AGG 0.448276 1_4:+788903 None:intergenic
ATGAAGAGAAGGTGGAGAGT+GGG 0.449965 1_4:-788720 Msa0142000:CDS
TTAGGAGAATCGTCGGAGAT+AGG 0.451508 1_4:+788835 None:intergenic
TGAGGTTTAAGAAGAGTAGA+GGG 0.454074 1_4:+788961 None:intergenic
AGGAAAACTTCCAGAACAAC+AGG 0.454950 1_4:-779488 Msa0142000:CDS
GGTCGGGATAATGTCACAAC+TGG 0.455133 1_4:-780369 Msa0142000:CDS
TGAAGGGAACGCGCGGGTGG+AGG 0.460103 1_4:+788920 None:intergenic
CCAAGGCGAGTAAATTTAGC+TGG 0.460716 1_4:+784742 None:intergenic
GTGGTACCCCAGGATTCAAT+GGG 0.461743 1_4:-782053 Msa0142000:CDS
GTTTACCGTAGCTGTTGGAT+TGG 0.462751 1_4:-785622 Msa0142000:CDS
AACTTCTTGTTGAAATGGAT+GGG 0.469351 1_4:-782588 Msa0142000:CDS
GGACCTTTGTCATCGTTAGC+AGG 0.472984 1_4:+779246 None:intergenic
GTGCTGTAGTATTCTAATAG+TGG 0.473458 1_4:+779225 None:intergenic
GAATCGTCGGAGATAGGTTC+GGG 0.475079 1_4:+788841 None:intergenic
GACGATTACTTCTCCCGTAT+CGG 0.475761 1_4:-779513 Msa0142000:CDS
GCTAAATTTACTCGCCTTGG+AGG 0.476125 1_4:-784739 Msa0142000:CDS
TTACTGAGGCCGATGCGAAT+CGG 0.479188 1_4:-788555 Msa0142000:CDS
ACCTTCTGGAATTCCCTCCT+TGG 0.479898 1_4:-787131 Msa0142000:intron
ATTGATGTCTCATCATTTGA+GGG 0.480191 1_4:+780462 None:intergenic
AACGCGCGGGTGGAGGCGCG+TGG 0.482203 1_4:+788927 None:intergenic
AGAATCGTCGGAGATAGGTT+CGG 0.482753 1_4:+788840 None:intergenic
CGGCTGTAGGTTTATCATGC+AGG 0.484405 1_4:+782103 None:intergenic
TGATAAAGATATTTGAAGAA+AGG 0.484840 1_4:-787252 Msa0142000:CDS
GCAAGAACTTGAGGAGGTTG+TGG 0.486955 1_4:-784779 Msa0142000:CDS
TTTCGGAATTGGTTGATTGG+TGG 0.487125 1_4:-788615 Msa0142000:CDS
CATCTCCTCAAATTCCGAAC+CGG 0.488253 1_4:+784009 None:intergenic
TACACTAGATCTGGCAAACC+TGG 0.489864 1_4:-781922 Msa0142000:intron
GAGAGTGGGGAAAAGAAAGA+TGG 0.490945 1_4:-788706 Msa0142000:CDS
CAGAAGAACTTATCTTTGGT+CGG 0.491737 1_4:-780386 Msa0142000:CDS
ATTGATGAAATTGATGCCGT+TGG 0.494452 1_4:-782658 Msa0142000:CDS
AGAAGAACTTATCTTTGGTC+GGG 0.494681 1_4:-780385 Msa0142000:CDS
CAAGGAAGTGATGCCAGAAA+AGG 0.496681 1_4:-785394 Msa0142000:intron
GGTTTGTTGGAGTTGGTGCT+CGG 0.497437 1_4:-782851 Msa0142000:CDS
GTGCAGAGAAGGGGAGTGAA+GGG 0.498083 1_4:+788904 None:intergenic
GAGGGGTTAGGAATGAGGAA+TGG 0.499225 1_4:+788979 None:intergenic
AGCAGAAGGGGATCTTGTAT+TGG 0.499724 1_4:-779455 Msa0142000:CDS
TTCGGGATTAGGTTCGGAGT+GGG 0.500209 1_4:+788858 None:intergenic
GATAAAGATATTTGAAGAAA+GGG 0.501718 1_4:-787251 Msa0142000:CDS
AGATGGGAGATTACCGATAG+TGG 0.503474 1_4:-788689 Msa0142000:CDS
CATCCATTTCAACAAGAAGT+TGG 0.504444 1_4:+782590 None:intergenic
ATGAGGTTTAAGAAGAGTAG+AGG 0.505014 1_4:+788960 None:intergenic
TTCCTTGTTTAGCTCCTTTG+GGG 0.505068 1_4:+785410 None:intergenic
CGGGTTGAAAAGTGCAGAGA+AGG 0.506860 1_4:+788893 None:intergenic
TGTACAGTATAAATTCCTAC+AGG 0.509284 1_4:-779379 Msa0142000:three_prime_UTR
GAAATTAACAGCTTCTCAGT+TGG 0.510238 1_4:-781859 Msa0142000:CDS
GATAGGTTCGGGATTAGGTT+CGG 0.513792 1_4:+788852 None:intergenic
TACCGAGCTTGCGCAATACA+TGG 0.515301 1_4:-780322 Msa0142000:intron
AGAGTGGGGAAAAGAAAGAT+GGG 0.515765 1_4:-788705 Msa0142000:CDS
GCTCGTCTTGATGTTTGTAT+GGG 0.515952 1_4:-780420 Msa0142000:CDS
TTCTTCTCCTGCCTCCAAAA+CGG 0.516546 1_4:+788592 None:intergenic
ACCCCAGGATTCAATGGGGC+AGG 0.516888 1_4:-782048 Msa0142000:intron
ATGAGGAATGGGAAGAGAAG+AGG 0.517503 1_4:+788991 None:intergenic
TTGTTGAGCTTAATAAGCAC+AGG 0.518276 1_4:-788504 Msa0142000:intron
CTACCAGGTCTCGTTAGAGC+TGG 0.519457 1_4:+782430 None:intergenic
TGAAGAGAAGGTGGAGAGTG+GGG 0.524186 1_4:-788719 Msa0142000:CDS
GGAGTGGGGAAGTGTAGTAT+CGG 0.524882 1_4:+788873 None:intergenic
CCGTGGATCTGCTTTAGGAA+TGG 0.526051 1_4:-780496 Msa0142000:CDS
AAGGCTATTGCTGGAGAAGC+CGG 0.527024 1_4:-784052 Msa0142000:CDS
GCAATAGCCCGTGGTACCCC+AGG 0.527714 1_4:-782063 Msa0142000:CDS
TAACCTTGCTAAGAGACACT+TGG 0.529492 1_4:+779055 None:intergenic
TATTAAAATGAAGAATACAT+AGG 0.530822 1_4:+779116 None:intergenic
CCTTTGGCAGCTTTCCTCCA+AGG 0.531093 1_4:+784725 None:intergenic
CATTGAATCCTGGGGTACCA+CGG 0.536347 1_4:+782055 None:intergenic
GATAAGAATTGCATGGGCTA+AGG 0.537144 1_4:+779325 None:intergenic
AAGAATTGCATGGGCTAAGG+AGG 0.537451 1_4:+779328 None:intergenic
TAATAGCAGCAATGTTCACC+AGG 0.538384 1_4:+781904 None:intergenic
TTTGCTACACAGATATTCAA+AGG 0.539756 1_4:+779273 None:intergenic
ATTGAATCCTGGGGTACCAC+GGG 0.540112 1_4:+782056 None:intergenic
ATCTTATGATAAGAATTGCA+TGG 0.542431 1_4:+779318 None:intergenic
AAATACATCGGAAGCTTGGG+TGG 0.543361 1_4:-785471 Msa0142000:CDS
TACCATGTATTGCGCAAGCT+CGG 0.544845 1_4:+780320 None:intergenic
CTTTGGGTGAGAGCGAAAGA+AGG 0.545221 1_4:-788652 Msa0142000:CDS
AATATCTTTATCACAGACTC+AGG 0.545857 1_4:+787262 None:intergenic
GATGAAGAGAAGGTGGAGAG+TGG 0.547117 1_4:-788721 Msa0142000:CDS
CGTCTTGATGTTTGTATGGG+AGG 0.550296 1_4:-780417 Msa0142000:CDS
CAGGAACAAGAAGAAGCAGA+AGG 0.551151 1_4:-779469 Msa0142000:CDS
CATTCCTAAAGCAGATCCAC+GGG 0.552648 1_4:+780497 None:intergenic
GTTGCAAGAGTTGAAACAGC+GGG 0.557627 1_4:-785963 Msa0142000:CDS
ACGCGCGGGTGGAGGCGCGT+GGG 0.560316 1_4:+788928 None:intergenic
TCAGGGGATTCTTCTGACTG+GGG 0.564763 1_4:-784310 Msa0142000:intron
ATATCTACATTATCGGCTGT+AGG 0.564889 1_4:+782090 None:intergenic
AATTGGCGCCGTCGTACATG+TGG 0.566322 1_4:+789122 None:intergenic
GAGTGGGGAAGTGTAGTATC+GGG 0.566611 1_4:+788874 None:intergenic
GGGTTGAAAAGTGCAGAGAA+GGG 0.566719 1_4:+788894 None:intergenic
GGAACAAGAAGAAGCAGAAG+GGG 0.569059 1_4:-779467 Msa0142000:CDS
AGGAACAAGAAGAAGCAGAA+GGG 0.570827 1_4:-779468 Msa0142000:CDS
TTTACCATAACCACGTGCAA+CGG 0.572472 1_4:+785887 None:intergenic
AAGTGTTGATGAAGAGAAGG+TGG 0.574549 1_4:-788728 Msa0142000:CDS
CTGTTTCCTAGTTGATCCAA+CGG 0.575192 1_4:+782642 None:intergenic
GGATGGGTTTGAGCAGAATG+AGG 0.575670 1_4:-782572 Msa0142000:intron
AACCTTGCTAAGAGACACTT+GGG 0.575927 1_4:+779056 None:intergenic
CGCGTGGGATTGAAGTGATG+AGG 0.576028 1_4:+788943 None:intergenic
ACCAAGGAGGGAATTCCAGA+AGG 0.577989 1_4:+787130 None:intergenic
GAGGTTTAAGAAGAGTAGAG+GGG 0.578192 1_4:+788962 None:intergenic
GACCCAAGTGTCTCTTAGCA+AGG 0.579015 1_4:-779058 Msa0142000:three_prime_UTR
TCTTATGATAAGAATTGCAT+GGG 0.579510 1_4:+779319 None:intergenic
AGCGAAAGAAGGATTGAAGA+GGG 0.579753 1_4:-788641 Msa0142000:CDS
TTACTTCTCCCGTATCGGGA+AGG 0.581959 1_4:-779508 Msa0142000:CDS
AGGGGAGTGAAGGGAACGCG+CGG 0.583037 1_4:+788913 None:intergenic
TGAGGCCGATGCGAATCGGT+TGG 0.585106 1_4:-788551 Msa0142000:CDS
GGGGAGTGAAGGGAACGCGC+GGG 0.588088 1_4:+788914 None:intergenic
TGAAAGTGTTGATGAAGAGA+AGG 0.588112 1_4:-788731 Msa0142000:CDS
AAAACATGAATTACCAAGGA+GGG 0.590298 1_4:+787118 None:intergenic
GAATACTACAGCACTTGCTG+AGG 0.594415 1_4:-779216 Msa0142000:three_prime_UTR
GACAGAGCTGTGGACAGTAG+AGG 0.595203 1_4:-787229 Msa0142000:CDS
TTCTAGGTTAGGAGAATCGT+CGG 0.595504 1_4:+788828 None:intergenic
CCTTGGAGGAAAGCTGCCAA+AGG 0.602817 1_4:-784725 Msa0142000:intron
TGCAGAATATCTTCCTGATG+AGG 0.603402 1_4:-787164 Msa0142000:CDS
CCATTCCTAAAGCAGATCCA+CGG 0.603684 1_4:+780496 None:intergenic
AGCATCCAACCGATTCGCAT+CGG 0.603784 1_4:+788546 None:intergenic
TCGGGATTAGGTTCGGAGTG+GGG 0.606691 1_4:+788859 None:intergenic
TATTAAGGGCAACAATTGCA+TGG 0.607650 1_4:+780559 None:intergenic
AGAATATCTTCGAGCACTAG+TGG 0.608927 1_4:-787200 Msa0142000:CDS
GGTGCAATGTCTTCTTGGTG+TGG 0.614778 1_4:+782611 None:intergenic
ATTGTTGCCCTTAATACCGA+CGG 0.614887 1_4:-780552 Msa0142000:CDS
TGATGCAAAGCAAGAACTTG+AGG 0.615992 1_4:-784788 Msa0142000:CDS
GCTGCTTCTCAGATATTCCA+GGG 0.618273 1_4:+785909 None:intergenic
AAGTTCATCTTATACCCCAA+AGG 0.619333 1_4:-785424 Msa0142000:CDS
GAGCGAAAGAAGGATTGAAG+AGG 0.620742 1_4:-788642 Msa0142000:CDS
CGGTGCACATCCAATTCACA+AGG 0.623940 1_4:-780532 Msa0142000:CDS
GATCCAGCTCTAACGAGACC+TGG 0.626768 1_4:-782433 Msa0142000:CDS
CCAGACCAATCCAACAGCTA+CGG 0.628119 1_4:+785617 None:intergenic
CATTGCTGCTATTAAAGCTG+CGG 0.632069 1_4:-781895 Msa0142000:CDS
TACCCCAAAGGAGCTAAACA+AGG 0.634360 1_4:-785412 Msa0142000:CDS
ACATGTCGATCAAATCTACC+AGG 0.635247 1_4:+782415 None:intergenic
TATTACTGTACTAATTATAG+GGG 0.638093 1_4:-779408 Msa0142000:three_prime_UTR
GGTTGAAAAGTGCAGAGAAG+GGG 0.641080 1_4:+788895 None:intergenic
AATACATCGGAAGCTTGGGT+GGG 0.641750 1_4:-785470 Msa0142000:CDS
TGAAGAAAGGGACAGAGCTG+TGG 0.642216 1_4:-787239 Msa0142000:CDS
TCATCAATGAAAATAATGCA+AGG 0.645297 1_4:+782673 None:intergenic
TGGATCAACTAGGAAACAGT+GGG 0.648027 1_4:-782638 Msa0142000:CDS
TGAGAAGCAGCCGTTGCACG+TGG 0.648811 1_4:-785897 Msa0142000:CDS
AGAATTGCATGGGCTAAGGA+GGG 0.648945 1_4:+779329 None:intergenic
GTGAATTGGATGTGCACCGT+CGG 0.649686 1_4:+780536 None:intergenic
AATACTACAGCACTTGCTGA+GGG 0.653077 1_4:-779215 Msa0142000:three_prime_UTR
ACCTGCCCCATTGAATCCTG+GGG 0.654030 1_4:+782047 None:intergenic
CAAATCCAGATGTACGTGGT+CGG 0.656095 1_4:-782146 Msa0142000:CDS
GATATTAAAGCAATAGCCCG+TGG 0.657393 1_4:-782072 Msa0142000:CDS
AATCCTGCTAACGATGACAA+AGG 0.657812 1_4:-779249 Msa0142000:three_prime_UTR
TTGGATCAACTAGGAAACAG+TGG 0.663653 1_4:-782639 Msa0142000:CDS
TGCAAAGCAAGAACTTGAGG+AGG 0.665232 1_4:-784785 Msa0142000:CDS
TCAACTAGGAAACAGTGGGA+GGG 0.665391 1_4:-782634 Msa0142000:CDS
ATCAACTAGGAAACAGTGGG+AGG 0.670980 1_4:-782635 Msa0142000:CDS
GTTCGGGATTAGGTTCGGAG+TGG 0.678284 1_4:+788857 None:intergenic
AAACAAATCCACATGTACGA+CGG 0.679653 1_4:-789130 Msa0142000:five_prime_UTR
TTGATGCCGTTGGATCAACT+AGG 0.681667 1_4:-782648 Msa0142000:CDS
CTTACTGCTTATCATGAGAG+CGG 0.684706 1_4:-780582 Msa0142000:CDS
ATTGGCGAAGTTGATTACTG+AGG 0.692137 1_4:-788569 Msa0142000:CDS
GTACCAAATCCAGATGTACG+TGG 0.724171 1_4:-782150 Msa0142000:CDS
AGTTGCAAGAGTTGAAACAG+CGG 0.728453 1_4:-785964 Msa0142000:CDS
AAGGCAACAATCATGCCCCG+TGG 0.731484 1_4:-780513 Msa0142000:CDS
ATTCCTAAAGCAGATCCACG+GGG 0.770989 1_4:+780498 None:intergenic
TGGTACCCCAGGATTCAATG+GGG 0.791131 1_4:-782052 Msa0142000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATCAAAAAAATTTGTATA+AGG + chr1_4:781938-781957 None:intergenic 10.0%
!! AATTATGATTATATAATACA+TGG + chr1_4:783298-783317 None:intergenic 10.0%
!! TTAAATAAAGTTTAATATGT+TGG - chr1_4:785258-785277 Msa0142000:intron 10.0%
!!! ATTTTTAGTATTTTAATGTT+AGG + chr1_4:786664-786683 None:intergenic 10.0%
!! ACATTATATAAAAAAAAGAT+TGG + chr1_4:786752-786771 None:intergenic 10.0%
!!! TATATTTTTTGTTATATTGT+TGG + chr1_4:786939-786958 None:intergenic 10.0%
!!! CAAATATTTTATCAATTTTT+TGG - chr1_4:787454-787473 Msa0142000:intron 10.0%
!!! TTTTTAGACAAATATTTTAT+TGG - chr1_4:789008-789027 Msa0142000:CDS 10.0%
!!! TATTATTCATAAGTTTGTTA+AGG - chr1_4:779917-779936 Msa0142000:intron 15.0%
!! GACAAAAAAAAAAAAAAGAT+TGG - chr1_4:780140-780159 Msa0142000:intron 15.0%
!! AAAAAAAAAAAAAAGATTGG+AGG - chr1_4:780143-780162 Msa0142000:intron 15.0%
!!! TTGTTGTTATAAATGTTTTT+AGG - chr1_4:780302-780321 Msa0142000:intron 15.0%
!! TATAGGAAAAGATAAAATAA+AGG - chr1_4:780531-780550 Msa0142000:CDS 15.0%
!! CATGTAAAATAGTTTATTAA+AGG + chr1_4:780726-780745 None:intergenic 15.0%
!!! ATGAACATAATAGTTATTTT+CGG - chr1_4:780814-780833 Msa0142000:intron 15.0%
!! AAAAAATTAGAAAAAAGTCA+AGG + chr1_4:781420-781439 None:intergenic 15.0%
!! AATAATCAAACAATAGAATT+GGG + chr1_4:782438-782457 None:intergenic 15.0%
!! AAATGTAGTAAGTATTATAT+TGG + chr1_4:783099-783118 None:intergenic 15.0%
!!! AATAATTCATTTGATAGTAT+TGG + chr1_4:783205-783224 None:intergenic 15.0%
!! ATAATAATAATGAAGTTCAA+TGG + chr1_4:784069-784088 None:intergenic 15.0%
!! AAGGAAAATTAAAAAAACAT+AGG - chr1_4:785892-785911 Msa0142000:CDS 15.0%
!! TATATTATATACACATTAAC+CGG + chr1_4:785962-785981 None:intergenic 15.0%
!! TAATGTGTATATAATATAGA+TGG - chr1_4:785964-785983 Msa0142000:CDS 15.0%
!! TAACATTTGAAAATTATGAA+CGG - chr1_4:786802-786821 Msa0142000:intron 15.0%
!!! TTACACTTTTTAAATGATAA+AGG - chr1_4:787071-787090 Msa0142000:intron 15.0%
!! TTATTTGTATTGAAAATTGA+GGG - chr1_4:787201-787220 Msa0142000:CDS 15.0%
!! TATAGATGAAAATAGAAAAT+TGG - chr1_4:787286-787305 Msa0142000:intron 15.0%
!! AATAAAATAGACACAAAAAA+TGG + chr1_4:787480-787499 None:intergenic 15.0%
!!! TCTATTTTATTTAGCATAAT+TGG - chr1_4:787489-787508 Msa0142000:intron 15.0%
!! CATAAATTCATTGAAAAAAT+TGG - chr1_4:788482-788501 Msa0142000:intron 15.0%
!! TATTAAAATGAAGAATACAT+AGG + chr1_4:789059-789078 None:intergenic 15.0%
!!! TTTACATTTTGTATTGTGTT+TGG - chr1_4:779760-779779 Msa0142000:intron 20.0%
!! AGTATATGAAAAAACAACTT+AGG - chr1_4:779941-779960 Msa0142000:intron 20.0%
!!! AATGTATTAGCTATTTCTAT+AGG - chr1_4:780514-780533 Msa0142000:CDS 20.0%
!! AATGAAAAAACATATGATAG+TGG + chr1_4:780877-780896 None:intergenic 20.0%
!! TGATAAAGATATTTGAAGAA+AGG - chr1_4:780920-780939 Msa0142000:intron 20.0%
!! GATAAAGATATTTGAAGAAA+GGG - chr1_4:780921-780940 Msa0142000:intron 20.0%
!! TTAAAGCAATTTGATCAAAA+CGG + chr1_4:781199-781218 None:intergenic 20.0%
!! CGAAAAATTCATTTAAACAA+AGG - chr1_4:781351-781370 Msa0142000:intron 20.0%
!!! AAAATTATCATCTAAGATGA+CGG - chr1_4:781547-781566 Msa0142000:intron 20.0%
!!! ATTCAAACATGATTTAAGTT+GGG - chr1_4:781585-781604 Msa0142000:intron 20.0%
!!! AGCAAATCTTTTTTCTTATT+AGG + chr1_4:781909-781928 None:intergenic 20.0%
!! TAATAAGAAAAAAGATTTGC+TGG - chr1_4:781908-781927 Msa0142000:CDS 20.0%
!! ATTTCAGTTCATAATTTACT+TGG - chr1_4:782147-782166 Msa0142000:CDS 20.0%
!! GAATAATCAAACAATAGAAT+TGG + chr1_4:782439-782458 None:intergenic 20.0%
!! TCTACTACAATATTACAATA+TGG - chr1_4:782841-782860 Msa0142000:CDS 20.0%
!!! GCATATAGATTATTTTCTTT+TGG - chr1_4:782863-782882 Msa0142000:intron 20.0%
!! AATACATGATTGAATAGTTT+AGG - chr1_4:782888-782907 Msa0142000:intron 20.0%
!!! TAAATTTAGCTGGATTTTTT+AGG + chr1_4:783423-783442 None:intergenic 20.0%
!!! AATATTTTGTTTATGAAGTC+AGG - chr1_4:783822-783841 Msa0142000:intron 20.0%
!! TCCAAAAATTATTCAAATAG+AGG + chr1_4:784382-784401 None:intergenic 20.0%
!! CTAAGAGAAATAAGAAATTA+TGG + chr1_4:785109-785128 None:intergenic 20.0%
!!! TTTTCTTCTTTATCTTTTGT+AGG - chr1_4:785474-785493 Msa0142000:CDS 20.0%
!!! ATTTATCATTTTTATGCTGT+AGG - chr1_4:785675-785694 Msa0142000:CDS 20.0%
!!! TTTATCATTTTTATGCTGTA+GGG - chr1_4:785676-785695 Msa0142000:CDS 20.0%
!! TCTTCGTAAATTCATTTATA+GGG + chr1_4:785805-785824 None:intergenic 20.0%
!! ACAAATTAAACAAGAGAAAA+AGG - chr1_4:785873-785892 Msa0142000:intron 20.0%
!! ATATTATATACACATTAACC+GGG + chr1_4:785961-785980 None:intergenic 20.0%
!! TGCTTTAATATCTACATTAT+CGG + chr1_4:786092-786111 None:intergenic 20.0%
!!! ACTATTTCATTGATAGTATA+TGG + chr1_4:786718-786737 None:intergenic 20.0%
!!! GTTCATAATTTTCAAATGTT+AGG + chr1_4:786803-786822 None:intergenic 20.0%
!! ATCATTGAAATAGATAATCA+TGG + chr1_4:786915-786934 None:intergenic 20.0%
!! ATTGTAGAAAAAGTTGTTTA+AGG - chr1_4:786998-787017 Msa0142000:intron 20.0%
!! TTGTAGAAAAAGTTGTTTAA+GGG - chr1_4:786999-787018 Msa0142000:intron 20.0%
!! GTTATTTGTATTGAAAATTG+AGG - chr1_4:787200-787219 Msa0142000:CDS 20.0%
!! CTAACAATTGAAATTATGTT+TGG - chr1_4:788247-788266 Msa0142000:intron 20.0%
!! TGTTTGATATATATACTGTT+TGG - chr1_4:788523-788542 Msa0142000:CDS 20.0%
!! GCTAAAAAAAATGACAAAAA+TGG + chr1_4:788570-788589 None:intergenic 20.0%
!! TGTATTACTGTACTAATTAT+AGG - chr1_4:788762-788781 Msa0142000:CDS 20.0%
!! GTATTACTGTACTAATTATA+GGG - chr1_4:788763-788782 Msa0142000:CDS 20.0%
!! TATTACTGTACTAATTATAG+GGG - chr1_4:788764-788783 Msa0142000:CDS 20.0%
!! AGATTAAAAAAAAAACCTGT+AGG + chr1_4:788811-788830 None:intergenic 20.0%
!! TCTTATCATAAGATGATTAT+AGG - chr1_4:788863-788882 Msa0142000:CDS 20.0%
!! TCGTTTTCAGTTGAATTTAA+CGG + chr1_4:779370-779389 None:intergenic 25.0%
!!! TGTCTTTTTGATTGTAATGT+AGG - chr1_4:779719-779738 Msa0142000:intron 25.0%
! TAATGTAGGAATAAGTTAGA+AGG - chr1_4:779733-779752 Msa0142000:intron 25.0%
! TTGTATTGTGTTTGGAAAAT+TGG - chr1_4:779768-779787 Msa0142000:intron 25.0%
! TGTATTGTGTTTGGAAAATT+GGG - chr1_4:779769-779788 Msa0142000:intron 25.0%
! AAAATAAGCTCAATCTAAAC+GGG + chr1_4:779868-779887 None:intergenic 25.0%
! CAAAATAAGCTCAATCTAAA+CGG + chr1_4:779869-779888 None:intergenic 25.0%
!! TGCTTGGGAAAATTTAAAAT+TGG - chr1_4:780179-780198 Msa0142000:intron 25.0%
! AAATTAGAGAAAGAACACTT+AGG - chr1_4:780208-780227 Msa0142000:intron 25.0%
! AACACTTAGGTTTACTATTT+GGG - chr1_4:780221-780240 Msa0142000:intron 25.0%
! TAGCTTCTGTTATGAAAATT+AGG - chr1_4:780332-780351 Msa0142000:CDS 25.0%
! AGCTTCTGTTATGAAAATTA+GGG - chr1_4:780333-780352 Msa0142000:CDS 25.0%
!!! GTTCTAAGATTAAGAAAAAG+AGG - chr1_4:780355-780374 Msa0142000:CDS 25.0%
! TAGTTTATTAAAGGTCTGTT+AGG + chr1_4:780717-780736 None:intergenic 25.0%
! AAGAAAAACATGAATTACCA+AGG + chr1_4:781061-781080 None:intergenic 25.0%
! TTAACAAATGTCTGTCTATT+AGG - chr1_4:781215-781234 Msa0142000:intron 25.0%
! TAAGGTAAAAACTAGAGTAA+GGG + chr1_4:781263-781282 None:intergenic 25.0%
! TTAAGGTAAAAACTAGAGTA+AGG + chr1_4:781264-781283 None:intergenic 25.0%
! TTCATTTAAACAAAGGAATC+TGG - chr1_4:781358-781377 Msa0142000:intron 25.0%
! TCATTTAAACAAAGGAATCT+GGG - chr1_4:781359-781378 Msa0142000:intron 25.0%
!!! CTAATTTTTTAGCCGAATTT+CGG - chr1_4:781430-781449 Msa0142000:intron 25.0%
!!! AGTAAAAGAAAGTCATTTTG+AGG + chr1_4:781464-781483 None:intergenic 25.0%
! CATTCAAACATGATTTAAGT+TGG - chr1_4:781584-781603 Msa0142000:intron 25.0%
!!! TTCAAACATGATTTAAGTTG+GGG - chr1_4:781586-781605 Msa0142000:intron 25.0%
!!! AGCTCAATTTTAGTAAAATG+AGG - chr1_4:781758-781777 Msa0142000:intron 25.0%
! AAGAAAGTTCATGTTAACAA+AGG + chr1_4:782099-782118 None:intergenic 25.0%
!!! CTTTTTTTTTATGCTTTGAG+TGG - chr1_4:782323-782342 Msa0142000:intron 25.0%
! TATACGTAAGAGTAGATTAA+CGG + chr1_4:782809-782828 None:intergenic 25.0%
!!! ACACGTGAACATTTATTTTA+CGG - chr1_4:782967-782986 Msa0142000:intron 25.0%
! ATATACTTCAAGAACTAATG+GGG + chr1_4:783182-783201 None:intergenic 25.0%
! GATATACTTCAAGAACTAAT+GGG + chr1_4:783183-783202 None:intergenic 25.0%
!! AAAGTTTTTACATTCTGCAA+GGG + chr1_4:783343-783362 None:intergenic 25.0%
!! AAAAGTTTTTACATTCTGCA+AGG + chr1_4:783344-783363 None:intergenic 25.0%
!! GCAGAATGTAAAAACTTTTA+AGG - chr1_4:783345-783364 Msa0142000:intron 25.0%
!!! AAAACTTTTAAGGATGTGAA+AGG - chr1_4:783355-783374 Msa0142000:intron 25.0%
!! CAATAACTTTTATAGACCTT+TGG + chr1_4:783466-783485 None:intergenic 25.0%
! CAAAGGTCTATAAAAGTTAT+TGG - chr1_4:783464-783483 Msa0142000:intron 25.0%
!! ATTCTATAGTCCTATACTTT+TGG - chr1_4:783926-783945 Msa0142000:intron 25.0%
!! TTCTATAGTCCTATACTTTT+GGG - chr1_4:783927-783946 Msa0142000:intron 25.0%
!! GCCTCTATTTGAATAATTTT+TGG - chr1_4:784378-784397 Msa0142000:intron 25.0%
! TTCACAAACTTGTAGTTATT+TGG + chr1_4:784452-784471 None:intergenic 25.0%
! AATTTAACAAGCAAAAGTCA+AGG - chr1_4:784525-784544 Msa0142000:intron 25.0%
! AAAAAAAAACACCCTTAATG+CGG - chr1_4:784704-784723 Msa0142000:intron 25.0%
! CAGGGAAAAAAATAAAAACA+AGG - chr1_4:784750-784769 Msa0142000:CDS 25.0%
!! TCTATTTTACGGGTATTTTT+GGG - chr1_4:784979-784998 Msa0142000:intron 25.0%
! ATTGTAATGTTCAAATTGTC+TGG + chr1_4:785055-785074 None:intergenic 25.0%
!! TAAATTTGATCTGTGTCTTT+TGG - chr1_4:785195-785214 Msa0142000:intron 25.0%
! ATAAAGTTTAATATGTTGGC+TGG - chr1_4:785262-785281 Msa0142000:intron 25.0%
! TCATCAATGAAAATAATGCA+AGG + chr1_4:785502-785521 None:intergenic 25.0%
! CTTCGTAAATTCATTTATAG+GGG + chr1_4:785804-785823 None:intergenic 25.0%
! CTCTTCGTAAATTCATTTAT+AGG + chr1_4:785806-785825 None:intergenic 25.0%
!!! AATTTGTTAATTCTTGCGAT+AGG + chr1_4:785860-785879 None:intergenic 25.0%
!! TTCATTGATAGTATATGGAA+TGG + chr1_4:786713-786732 None:intergenic 25.0%
! AAATGTTAGGCAATAAAAAG+TGG + chr1_4:786790-786809 None:intergenic 25.0%
!! ATAGATAATCATGGTTAGTT+TGG + chr1_4:786906-786925 None:intergenic 25.0%
! TCTACAATAAAGATTGTTGT+TGG + chr1_4:786986-787005 None:intergenic 25.0%
!! AAGTTGTTTAAGGGTATAAT+TGG - chr1_4:787008-787027 Msa0142000:intron 25.0%
!! AGTTGTTTAAGGGTATAATT+GGG - chr1_4:787009-787028 Msa0142000:intron 25.0%
!!! TTGAAAATTGAGGGTATTTT+TGG - chr1_4:787210-787229 Msa0142000:CDS 25.0%
!! TTAGAAATTACTCTAGGAAA+TGG + chr1_4:787415-787434 None:intergenic 25.0%
! ATGCTCAGTTATGTTATTAA+TGG - chr1_4:787552-787571 Msa0142000:intron 25.0%
! ATGAATTTATGTACCTCAAA+AGG + chr1_4:788473-788492 None:intergenic 25.0%
! ATCAAACATTGCATAATTCA+GGG + chr1_4:788511-788530 None:intergenic 25.0%
! TATCAAACATTGCATAATTC+AGG + chr1_4:788512-788531 None:intergenic 25.0%
!!! TCATTTTTTTTAGCATGAGA+AGG - chr1_4:788576-788595 Msa0142000:CDS 25.0%
! TCTTATGATAAGAATTGCAT+GGG + chr1_4:788856-788875 None:intergenic 25.0%
! ATCTTATGATAAGAATTGCA+TGG + chr1_4:788857-788876 None:intergenic 25.0%
GTAACCTTATCCAATGAAAT+TGG + chr1_4:779070-779089 None:intergenic 30.0%
GTATTGTGTTTGGAAAATTG+GGG - chr1_4:779770-779789 Msa0142000:intron 30.0%
!! TAGTTTGGTTTGAAGATTGT+AGG - chr1_4:779795-779814 Msa0142000:intron 30.0%
TCGAGTGATTAAAGAACTTT+AGG - chr1_4:779841-779860 Msa0142000:intron 30.0%
CGAGTGATTAAAGAACTTTA+GGG - chr1_4:779842-779861 Msa0142000:intron 30.0%
CAAAATAAGCTCAATCCAAA+CGG - chr1_4:780043-780062 Msa0142000:intron 30.0%
AAAATAAGCTCAATCCAAAC+GGG - chr1_4:780044-780063 Msa0142000:intron 30.0%
CCAAAACAAATTCTCTCAAA+CGG + chr1_4:780088-780107 None:intergenic 30.0%
!!! TTTTTTTTGTCTTGCCTTAG+TGG + chr1_4:780131-780150 None:intergenic 30.0%
GAACACTTAGGTTTACTATT+TGG - chr1_4:780220-780239 Msa0142000:intron 30.0%
AGCAGTACTATACTAATTCT+AGG + chr1_4:780253-780272 None:intergenic 30.0%
ATAAGTTATTCACCCAAACA+GGG + chr1_4:780455-780474 None:intergenic 30.0%
AATAAGTTATTCACCCAAAC+AGG + chr1_4:780456-780475 None:intergenic 30.0%
GAACTTAAGAAAACAGCTTA+TGG + chr1_4:780645-780664 None:intergenic 30.0%
!!! TTTTCTAAGATAGTGACACA+TGG + chr1_4:780761-780780 None:intergenic 30.0%
!! ACATAATAGTTATTTTCGGC+TGG - chr1_4:780818-780837 Msa0142000:intron 30.0%
!! CATAATAGTTATTTTCGGCT+GGG - chr1_4:780819-780838 Msa0142000:intron 30.0%
AATATCTTTATCACAGACTC+AGG + chr1_4:780913-780932 None:intergenic 30.0%
AAAACATGAATTACCAAGGA+GGG + chr1_4:781057-781076 None:intergenic 30.0%
AAAAACATGAATTACCAAGG+AGG + chr1_4:781058-781077 None:intergenic 30.0%
! TGTAGCTATTTGTTGATACT+AGG - chr1_4:781173-781192 Msa0142000:intron 30.0%
! TTTTTACCTTAAGCTGCTTA+TGG - chr1_4:781272-781291 Msa0142000:intron 30.0%
!!! TTTTGGGATAGTTGTTCATT+GGG - chr1_4:781295-781314 Msa0142000:intron 30.0%
TTAGAAAAAAGTCAAGGATC+AGG + chr1_4:781414-781433 None:intergenic 30.0%
!! AAAAGAAAGTCATTTTGAGG+CGG + chr1_4:781461-781480 None:intergenic 30.0%
AACACAACCATAATGCTAAT+AGG - chr1_4:781515-781534 Msa0142000:intron 30.0%
TGTGAAACCTATTAGCATTA+TGG + chr1_4:781525-781544 None:intergenic 30.0%
!! TCAAACATGATTTAAGTTGG+GGG - chr1_4:781587-781606 Msa0142000:intron 30.0%
! AAACAGCATTACAACTTTTG+TGG + chr1_4:781699-781718 None:intergenic 30.0%
ACAAAAGTTGTAATGCTGTT+TGG - chr1_4:781698-781717 Msa0142000:intron 30.0%
!!! TAAGCTCTTGTTGGTTTTTA+GGG + chr1_4:781738-781757 None:intergenic 30.0%
!!! TTAAGCTCTTGTTGGTTTTT+AGG + chr1_4:781739-781758 None:intergenic 30.0%
AAATGAGGATACAAAGTCAA+TGG - chr1_4:781773-781792 Msa0142000:intron 30.0%
TCAATGGTAGACATACAATA+GGG - chr1_4:781789-781808 Msa0142000:CDS 30.0%
TGAGACACACATATAAGTAT+AGG + chr1_4:782353-782372 None:intergenic 30.0%
!!! ATGAAGCTGCTTCATTTTTT+AGG - chr1_4:782469-782488 Msa0142000:CDS 30.0%
TTGAGAAAAAGAGAGAGATA+GGG + chr1_4:782597-782616 None:intergenic 30.0%
ATTGAGAAAAAGAGAGAGAT+AGG + chr1_4:782598-782617 None:intergenic 30.0%
GAATACAAGTATGCATCAAA+GGG + chr1_4:782638-782657 None:intergenic 30.0%
ATACGTAAGAGTAGATTAAC+GGG + chr1_4:782808-782827 None:intergenic 30.0%
TGTGTATTAGCAAGAAATCT+GGG - chr1_4:782911-782930 Msa0142000:intron 30.0%
!!! CACGTGAACATTTATTTTAC+GGG - chr1_4:782968-782987 Msa0142000:intron 30.0%
TATACTTCAAGAACTAATGG+GGG + chr1_4:783181-783200 None:intergenic 30.0%
GGATATACTTCAAGAACTAA+TGG + chr1_4:783184-783203 None:intergenic 30.0%
AGCTTCCATATGACAAATAA+GGG + chr1_4:783238-783257 None:intergenic 30.0%
CTCTTGCATATACGATATAT+CGG - chr1_4:783256-783275 Msa0142000:intron 30.0%
! AAGTTTTTACATTCTGCAAG+GGG + chr1_4:783342-783361 None:intergenic 30.0%
CTAACAAACATGTAAAGCTT+TGG - chr1_4:783651-783670 Msa0142000:intron 30.0%
! TTTTATCTAGGCACGTATAA+AGG + chr1_4:783761-783780 None:intergenic 30.0%
CTATAGAATTTAACTGACCT+TGG + chr1_4:783915-783934 None:intergenic 30.0%
! CAAAAACTTCCCAAAAGTAT+AGG + chr1_4:783939-783958 None:intergenic 30.0%
!! CTATACTTTTGGGAAGTTTT+TGG - chr1_4:783937-783956 Msa0142000:intron 30.0%
!! TTTTTGGAAGGACTTAAATC+CGG - chr1_4:783953-783972 Msa0142000:intron 30.0%
!! ATCTGATTGTTTGCTATATC+TGG - chr1_4:784090-784109 Msa0142000:intron 30.0%
!! TCTGATTGTTTGCTATATCT+GGG - chr1_4:784091-784110 Msa0142000:intron 30.0%
TGCTAGATTATGTTAAGAAG+TGG - chr1_4:784198-784217 Msa0142000:intron 30.0%
GCTAGATTATGTTAAGAAGT+GGG - chr1_4:784199-784218 Msa0142000:intron 30.0%
! AAGGGTATATTCTGTTATTC+TGG - chr1_4:784239-784258 Msa0142000:intron 30.0%
!!! TGACAACTTGTCACTTTTTA+TGG + chr1_4:784489-784508 None:intergenic 30.0%
! TAGTTTTTGCAGAATAGAGA+AGG - chr1_4:784902-784921 Msa0142000:intron 30.0%
! CTCTATTTTACGGGTATTTT+TGG - chr1_4:784978-784997 Msa0142000:intron 30.0%
! TCTTATTTCTCTTAGATCTG+TGG - chr1_4:785114-785133 Msa0142000:intron 30.0%
! AAAGCAACAAACCTTCTTTT+TGG + chr1_4:785372-785391 None:intergenic 30.0%
! GTGTGTTGGTAAACTAAAAT+AGG + chr1_4:785421-785440 None:intergenic 30.0%
!!! ATTTTAGTTTACCAACACAC+AGG - chr1_4:785421-785440 Msa0142000:CDS 30.0%
AACTTCTTGTTGAAATGGAT+GGG - chr1_4:785584-785603 Msa0142000:intron 30.0%
GCTGTAGGGAATAATATTAA+TGG - chr1_4:785690-785709 Msa0142000:intron 30.0%
GATTGAAATAGAAACTGGAA+AGG + chr1_4:785926-785945 None:intergenic 30.0%
GTAAGATGACTAACAAATTC+TGG - chr1_4:785986-786005 Msa0142000:intron 30.0%
! AGTATATGATTCGCATTGAT+TGG + chr1_4:786189-786208 None:intergenic 30.0%
TATATCACATACACTAGATC+TGG - chr1_4:786241-786260 Msa0142000:intron 30.0%
TGCAAAAGACCGAATAATTA+TGG - chr1_4:786340-786359 Msa0142000:intron 30.0%
GCAAAAGACCGAATAATTAT+GGG - chr1_4:786341-786360 Msa0142000:intron 30.0%
GCGAAAAACAATGTTTGTAT+CGG - chr1_4:786370-786389 Msa0142000:intron 30.0%
AAAAACAATGTTTGTATCGG+AGG - chr1_4:786373-786392 Msa0142000:intron 30.0%
TGTAGGAATATGTATATGTC+AGG - chr1_4:786412-786431 Msa0142000:intron 30.0%
AACATAGGTTTACAACTACA+GGG + chr1_4:786550-786569 None:intergenic 30.0%
! TAAGGGTATAATTGGGATAA+TGG - chr1_4:787016-787035 Msa0142000:intron 30.0%
GCAACTAACTATTCATTAGA+TGG + chr1_4:787316-787335 None:intergenic 30.0%
!! AGTTGATAGGATAGGTAAAT+TGG - chr1_4:787357-787376 Msa0142000:intron 30.0%
ATTGATGTCTCATCATTTGA+GGG + chr1_4:787713-787732 None:intergenic 30.0%
TATTGATGTCTCATCATTTG+AGG + chr1_4:787714-787733 None:intergenic 30.0%
CACAAATGAACATCAACAAA+AGG + chr1_4:787967-787986 None:intergenic 30.0%
AGCAGAAAGTAAGATATATC+TGG + chr1_4:788022-788041 None:intergenic 30.0%
!!! GTATTTTAACTCTCTTCACA+AGG - chr1_4:788103-788122 Msa0142000:intron 30.0%
AATCGGACCAATTCATATAA+AGG - chr1_4:788151-788170 Msa0142000:intron 30.0%
!! TTAGTTGATTTGCTCTTCTA+AGG - chr1_4:788271-788290 Msa0142000:intron 30.0%
GACATCAACAATCAAATTCA+TGG - chr1_4:788293-788312 Msa0142000:intron 30.0%
! GAATCAAAAGTAACCTTTTG+AGG - chr1_4:788457-788476 Msa0142000:intron 30.0%
TGTACAGTATAAATTCCTAC+AGG - chr1_4:788793-788812 Msa0142000:CDS 30.0%
TTTGCTACACAGATATTCAA+AGG + chr1_4:788902-788921 None:intergenic 30.0%
AAACAAATCCACATGTACGA+CGG - chr1_4:779042-779061 Msa0142000:three_prime_UTR 35.0%
AGTAGAACGAACTCAAACTA+TGG - chr1_4:779129-779148 Msa0142000:three_prime_UTR 35.0%
TGAGGTTTAAGAAGAGTAGA+GGG + chr1_4:779214-779233 None:intergenic 35.0%
ATGAGGTTTAAGAAGAGTAG+AGG + chr1_4:779215-779234 None:intergenic 35.0%
!! GAATTTAACGGTTCTAGGTT+AGG + chr1_4:779358-779377 None:intergenic 35.0%
CAGTTGAATTTAACGGTTCT+AGG + chr1_4:779363-779382 None:intergenic 35.0%
!! TGAAAGTGTTGATGAAGAGA+AGG - chr1_4:779441-779460 Msa0142000:exon 35.0%
CCAATCAAAAACACCACTAT+CGG + chr1_4:779499-779518 None:intergenic 35.0%
!! CGATAGTGGTGTTTTTGATT+GGG - chr1_4:779497-779516 Msa0142000:CDS 35.0%
TTGTTGAGCTTAATAAGCAC+AGG - chr1_4:779668-779687 Msa0142000:intron 35.0%
TGGAAAATTGGGGTTTAGTT+TGG - chr1_4:779780-779799 Msa0142000:intron 35.0%
AAATAAGCTCAATCCAAACG+GGG - chr1_4:780045-780064 Msa0142000:intron 35.0%
!! CCGTTTGAGAGAATTTGTTT+TGG - chr1_4:780085-780104 Msa0142000:intron 35.0%
AGAAAAAGAGGAAGAGAAAC+TGG - chr1_4:780367-780386 Msa0142000:CDS 35.0%
TCCAAAGATGCAATACACTT+AGG - chr1_4:780429-780448 Msa0142000:CDS 35.0%
TGGGTTTGTAATTCTTGAGA+TGG - chr1_4:780838-780857 Msa0142000:intron 35.0%
! CTTAAGCTGCTTATGGTTTT+GGG - chr1_4:781279-781298 Msa0142000:intron 35.0%
!!! GTTTTGGGATAGTTGTTCAT+TGG - chr1_4:781294-781313 Msa0142000:intron 35.0%
!! CAAAGGAATCTGGGATTTTT+CGG - chr1_4:781368-781387 Msa0142000:intron 35.0%
TTCGGCCAAAATTCTGTAAA+AGG - chr1_4:781386-781405 Msa0142000:intron 35.0%
TCGGCCAAAATTCTGTAAAA+GGG - chr1_4:781387-781406 Msa0142000:intron 35.0%
! AGGACCCTTTTACAGAATTT+TGG + chr1_4:781394-781413 None:intergenic 35.0%
!!! ATTTTTTAGCCGAATTTCGG+AGG - chr1_4:781433-781452 Msa0142000:intron 35.0%
TTAGCATTATGGTTGTGTTC+AGG + chr1_4:781514-781533 None:intergenic 35.0%
!! TCTAAGATGACGGAGAAATT+AGG - chr1_4:781557-781576 Msa0142000:intron 35.0%
!! CTAAGATGACGGAGAAATTA+GGG - chr1_4:781558-781577 Msa0142000:intron 35.0%
!! TAAGATGACGGAGAAATTAG+GGG - chr1_4:781559-781578 Msa0142000:intron 35.0%
AATTGAGCTTAAGCTCTTGT+TGG + chr1_4:781747-781766 None:intergenic 35.0%
GTCAATGGTAGACATACAAT+AGG - chr1_4:781788-781807 Msa0142000:CDS 35.0%
ATGCATTTGAGAGGAAAGTA+AGG - chr1_4:781822-781841 Msa0142000:CDS 35.0%
ATAATGACGTTGTTTGACCA+AGG - chr1_4:781872-781891 Msa0142000:CDS 35.0%
ATTTCTCCGAAATATGCTTC+TGG - chr1_4:781994-782013 Msa0142000:intron 35.0%
! TCAGATCCAGAAGCATATTT+CGG + chr1_4:782003-782022 None:intergenic 35.0%
!! ATTTTGTTTACCGTAGCTGT+TGG - chr1_4:782545-782564 Msa0142000:intron 35.0%
GGAATACAAGTATGCATCAA+AGG + chr1_4:782639-782658 None:intergenic 35.0%
GCTGCACTTCAAAAATACAT+CGG - chr1_4:782689-782708 Msa0142000:intron 35.0%
TCAAAAATACATCGGAAGCT+TGG - chr1_4:782697-782716 Msa0142000:intron 35.0%
CAAAAATACATCGGAAGCTT+GGG - chr1_4:782698-782717 Msa0142000:intron 35.0%
AAGTTCATCTTATACCCCAA+AGG - chr1_4:782748-782767 Msa0142000:intron 35.0%
!!! ATTAACGGGTTAACCTTTTC+TGG + chr1_4:782794-782813 None:intergenic 35.0%
GTGTGTATTAGCAAGAAATC+TGG - chr1_4:782910-782929 Msa0142000:intron 35.0%
GTCGATGAAATAGTTAGCAA+TGG + chr1_4:783127-783146 None:intergenic 35.0%
CCATATGACAAATAAGGGTA+AGG + chr1_4:783233-783252 None:intergenic 35.0%
! CCTTACCCTTATTTGTCATA+TGG - chr1_4:783230-783249 Msa0142000:intron 35.0%
GAGCTTCCATATGACAAATA+AGG + chr1_4:783239-783258 None:intergenic 35.0%
ATCAGTTCCTAAACAGTGAT+TGG + chr1_4:783587-783606 None:intergenic 35.0%
! TCATGCTTGTTAGTGCAATT+TGG - chr1_4:783795-783814 Msa0142000:intron 35.0%
! CTAAGATGATCCTCTTTTCA+GGG - chr1_4:783845-783864 Msa0142000:intron 35.0%
! TAAGATGATCCTCTTTTCAG+GGG - chr1_4:783846-783865 Msa0142000:intron 35.0%
!! ACTTTTGGGAAGTTTTTGGA+AGG - chr1_4:783941-783960 Msa0142000:intron 35.0%
ACGATAGAAAAATGGAACAC+CGG + chr1_4:784142-784161 None:intergenic 35.0%
GCACATGATATGCTAGAAAA+GGG - chr1_4:784221-784240 Msa0142000:intron 35.0%
! TATCCTGGTATACCAGTTTT+GGG + chr1_4:784343-784362 None:intergenic 35.0%
GCTCTATTATCATGAAACAG+AGG - chr1_4:784676-784695 Msa0142000:intron 35.0%
TTTGCAGAATAGAGAAGGAA+AGG - chr1_4:784907-784926 Msa0142000:intron 35.0%
TTGCAGAATAGAGAAGGAAA+GGG - chr1_4:784908-784927 Msa0142000:intron 35.0%
CCGTAAAATAGAGTCTGTTA+GGG + chr1_4:784971-784990 None:intergenic 35.0%
! CCCTAACAGACTCTATTTTA+CGG - chr1_4:784968-784987 Msa0142000:intron 35.0%
! CCTAACAGACTCTATTTTAC+GGG - chr1_4:784969-784988 Msa0142000:intron 35.0%
ACAACAGATGTACTACAATG+CGG + chr1_4:785015-785034 None:intergenic 35.0%
! GTTTAATATGTTGGCTGGTA+TGG - chr1_4:785267-785286 Msa0142000:intron 35.0%
! TCATATTTCTGTTCATGCTC+AGG - chr1_4:785300-785319 Msa0142000:intron 35.0%
ATTTCAAGCAGCCAAAAAGA+AGG - chr1_4:785358-785377 Msa0142000:intron 35.0%
ATTGATGAAATTGATGCCGT+TGG - chr1_4:785514-785533 Msa0142000:intron 35.0%
CATCCATTTCAACAAGAAGT+TGG + chr1_4:785585-785604 None:intergenic 35.0%
CAACTTCTTGTTGAAATGGA+TGG - chr1_4:785583-785602 Msa0142000:intron 35.0%
TCCAGTTTCTATTTCAATCC+AGG - chr1_4:785927-785946 Msa0142000:CDS 35.0%
ACCTGGATTGAAATAGAAAC+TGG + chr1_4:785931-785950 None:intergenic 35.0%
! ATATCTACATTATCGGCTGT+AGG + chr1_4:786085-786104 None:intergenic 35.0%
!! ATATGATTCGCATTGATTGG+AGG + chr1_4:786186-786205 None:intergenic 35.0%
ATTACAGAGAACATCAGTCA+GGG + chr1_4:786221-786240 None:intergenic 35.0%
AATTACAGAGAACATCAGTC+AGG + chr1_4:786222-786241 None:intergenic 35.0%
GAAATTAACAGCTTCTCAGT+TGG - chr1_4:786313-786332 Msa0142000:intron 35.0%
GCTCTGTACCCATAATTATT+CGG + chr1_4:786352-786371 None:intergenic 35.0%
! GAGTCAAAAAAGGTATGTGT+AGG - chr1_4:786395-786414 Msa0142000:intron 35.0%
!! AGTTTGCTACTTAAGAACTG+TGG - chr1_4:786441-786460 Msa0142000:intron 35.0%
TTAAGATAATGCAGCACAGA+AGG + chr1_4:786513-786532 None:intergenic 35.0%
GAACATAGGTTTACAACTAC+AGG + chr1_4:786551-786570 None:intergenic 35.0%
CTGTTGTAAACTCAGAACAT+AGG + chr1_4:786565-786584 None:intergenic 35.0%
! CTATGTTCTGAGTTTACAAC+AGG - chr1_4:786563-786582 Msa0142000:intron 35.0%
TGAGTTTACAACAGGCTTAT+AGG - chr1_4:786571-786590 Msa0142000:intron 35.0%
TTGCTAAATCAGTTGTTAGC+TGG - chr1_4:787332-787351 Msa0142000:intron 35.0%
! TTACTCTAGGAAATGGTTCA+AGG + chr1_4:787408-787427 None:intergenic 35.0%
AGCAGGTTAGAAATTACTCT+AGG + chr1_4:787421-787440 None:intergenic 35.0%
!!! TTTGTTTTTGAGCAATCAGC+AGG + chr1_4:787438-787457 None:intergenic 35.0%
GCATAATTGGATTGTTGTGT+TGG - chr1_4:787502-787521 Msa0142000:intron 35.0%
TATTAAGGGCAACAATTGCA+TGG + chr1_4:787616-787635 None:intergenic 35.0%
ATGATTGTTGCCTTGTGAAT+TGG + chr1_4:787653-787672 None:intergenic 35.0%
GTTGCAGAAGAACTTATCTT+TGG - chr1_4:787782-787801 Msa0142000:intron 35.0%
CAGAAGAACTTATCTTTGGT+CGG - chr1_4:787786-787805 Msa0142000:intron 35.0%
AGAAGAACTTATCTTTGGTC+GGG - chr1_4:787787-787806 Msa0142000:intron 35.0%
GTTGATGTTCATTTGTGACT+TGG - chr1_4:787970-787989 Msa0142000:intron 35.0%
! TTCACAAGGTATCAAGTTGT+GGG - chr1_4:788117-788136 Msa0142000:intron 35.0%
GGTCTCTCCTTTATATGAAT+TGG + chr1_4:788161-788180 None:intergenic 35.0%
GTGCTGTAGTATTCTAATAG+TGG + chr1_4:788950-788969 None:intergenic 35.0%
!!! TGCTGAGGGCAATATTTTTT+TGG - chr1_4:788971-788990 Msa0142000:CDS 35.0%
! CTCTTTCACTCTGTGTTTTG+AGG + chr1_4:779108-779127 None:intergenic 40.0%
TTAAGAAGAGTAGAGGGGTT+AGG + chr1_4:779208-779227 None:intergenic 40.0%
GAGGTTTAAGAAGAGTAGAG+GGG + chr1_4:779213-779232 None:intergenic 40.0%
TTCTAGGTTAGGAGAATCGT+CGG + chr1_4:779347-779366 None:intergenic 40.0%
!! AAGTGTTGATGAAGAGAAGG+TGG - chr1_4:779444-779463 Msa0142000:exon 40.0%
AGAGTGGGGAAAAGAAAGAT+GGG - chr1_4:779467-779486 Msa0142000:CDS 40.0%
!! CCGATAGTGGTGTTTTTGAT+TGG - chr1_4:779496-779515 Msa0142000:CDS 40.0%
!! TGGTGTTTTTGATTGGGCTT+TGG - chr1_4:779503-779522 Msa0142000:CDS 40.0%
!! GGTGTTTTTGATTGGGCTTT+GGG - chr1_4:779504-779523 Msa0142000:CDS 40.0%
AGCGAAAGAAGGATTGAAGA+GGG - chr1_4:779531-779550 Msa0142000:CDS 40.0%
! CGTTTTCGGAATTGGTTGAT+TGG - chr1_4:779554-779573 Msa0142000:CDS 40.0%
TTTCGGAATTGGTTGATTGG+TGG - chr1_4:779557-779576 Msa0142000:CDS 40.0%
! ATTGGCGAAGTTGATTACTG+AGG - chr1_4:779603-779622 Msa0142000:intron 40.0%
TGTAGGACATGTAAACCAAG+TGG - chr1_4:779812-779831 Msa0142000:intron 40.0%
AAACGGTTCGTCTCTAACTA+AGG + chr1_4:780071-780090 None:intergenic 40.0%
! AGGACATGCAACAATTTGCT+TGG - chr1_4:780163-780182 Msa0142000:intron 40.0%
! GGACATGCAACAATTTGCTT+GGG - chr1_4:780164-780183 Msa0142000:intron 40.0%
GCCTAAGTGTATTGCATCTT+TGG + chr1_4:780433-780452 None:intergenic 40.0%
AATACACTTAGGCCCTGTTT+GGG - chr1_4:780440-780459 Msa0142000:CDS 40.0%
!! GCTGTTTTCATATGCTATCG+TGG - chr1_4:780579-780598 Msa0142000:CDS 40.0%
CTCGCAAATCTTATGTCTGT+TGG - chr1_4:780676-780695 Msa0142000:intron 40.0%
AGAATATCTTCGAGCACTAG+TGG - chr1_4:780972-780991 Msa0142000:intron 40.0%
TGCAGAATATCTTCCTGATG+AGG - chr1_4:781008-781027 Msa0142000:intron 40.0%
TATCTTCCTGATGAGGAATC+TGG - chr1_4:781015-781034 Msa0142000:intron 40.0%
AGTGCTTCATTGTTCACTAG+TGG - chr1_4:781122-781141 Msa0142000:intron 40.0%
TAGCTACAAAACAAGATGCC+TGG + chr1_4:781161-781180 None:intergenic 40.0%
CCAAAACCATAAGCAGCTTA+AGG + chr1_4:781281-781300 None:intergenic 40.0%
! CCTTAAGCTGCTTATGGTTT+TGG - chr1_4:781278-781297 Msa0142000:intron 40.0%
! GACTTTCTTTTACTACCGAG+AGG - chr1_4:781470-781489 Msa0142000:intron 40.0%
! TGTGTTCAGGTTATGAGACT+TGG + chr1_4:781501-781520 None:intergenic 40.0%
!! AAGATGACGGAGAAATTAGG+GGG - chr1_4:781560-781579 Msa0142000:intron 40.0%
!! TGATTTAAGTTGGGGGAATG+AGG - chr1_4:781594-781613 Msa0142000:intron 40.0%
GAGAAGTGAATGCATTTGAG+AGG - chr1_4:781813-781832 Msa0142000:CDS 40.0%
AGTTGCAAGAGTTGAAACAG+CGG - chr1_4:782208-782227 Msa0142000:intron 40.0%
TTTACCATAACCACGTGCAA+CGG + chr1_4:782288-782307 None:intergenic 40.0%
TACAAGTATGCATCAAAGGG+TGG + chr1_4:782635-782654 None:intergenic 40.0%
TGTACGTCTGTCAGGTTTAT+GGG - chr1_4:782662-782681 Msa0142000:CDS 40.0%
! TTCCTTGTTTAGCTCCTTTG+GGG + chr1_4:782765-782784 None:intergenic 40.0%
! CTTCCTTGTTTAGCTCCTTT+GGG + chr1_4:782766-782785 None:intergenic 40.0%
! ACTTCCTTGTTTAGCTCCTT+TGG + chr1_4:782767-782786 None:intergenic 40.0%
TGTCCAACTTTCTTGTTGAC+TGG + chr1_4:783149-783168 None:intergenic 40.0%
TGATGCAAAGCAAGAACTTG+AGG - chr1_4:783384-783403 Msa0142000:intron 40.0%
CTCTAGTCCAATCACTGTTT+AGG - chr1_4:783577-783596 Msa0142000:intron 40.0%
! GCTAAGATGATCCTCTTTTC+AGG - chr1_4:783844-783863 Msa0142000:intron 40.0%
!! GTTCCATTTTTCTATCGTGC+CGG - chr1_4:784144-784163 Msa0142000:intron 40.0%
!!! ATTTTTCTATCGTGCCGGTT+CGG - chr1_4:784149-784168 Msa0142000:intron 40.0%
GGCACATGATATGCTAGAAA+AGG - chr1_4:784220-784239 Msa0142000:intron 40.0%
AACGACTATGTTGTCAATCG+TGG - chr1_4:784295-784314 Msa0142000:CDS 40.0%
ATGTTGTCAATCGTGGATAG+TGG - chr1_4:784302-784321 Msa0142000:CDS 40.0%
! ATCCTGGTATACCAGTTTTG+GGG + chr1_4:784342-784361 None:intergenic 40.0%
! CTATCCTGGTATACCAGTTT+TGG + chr1_4:784344-784363 None:intergenic 40.0%
ATGAAGTTGCCATGACTGAA+CGG - chr1_4:784622-784641 Msa0142000:intron 40.0%
TTGTCCGAATAGAACAGAGA+AGG + chr1_4:784730-784749 None:intergenic 40.0%
TCTGTTCTATTCGGACAACA+GGG - chr1_4:784732-784751 Msa0142000:CDS 40.0%
TCTGCAAGCAGAACAAGAAA+GGG + chr1_4:784866-784885 None:intergenic 40.0%
TTCTGCAAGCAGAACAAGAA+AGG + chr1_4:784867-784886 None:intergenic 40.0%
TTCTTGTTCTGCTTGCAGAA+TGG - chr1_4:784867-784886 Msa0142000:intron 40.0%
! TGCTTGCAGAATGGATGTTT+TGG - chr1_4:784876-784895 Msa0142000:intron 40.0%
AGAGAAGGAAAGGGAATGTT+AGG - chr1_4:784917-784936 Msa0142000:intron 40.0%
GAGAAGGAAAGGGAATGTTA+GGG - chr1_4:784918-784937 Msa0142000:intron 40.0%
CCCGTAAAATAGAGTCTGTT+AGG + chr1_4:784972-784991 None:intergenic 40.0%
CAACAGATGTACTACAATGC+GGG + chr1_4:785014-785033 None:intergenic 40.0%
CTGTTTCCTAGTTGATCCAA+CGG + chr1_4:785533-785552 None:intergenic 40.0%
TTGGATCAACTAGGAAACAG+TGG - chr1_4:785533-785552 Msa0142000:intron 40.0%
TGGATCAACTAGGAAACAGT+GGG - chr1_4:785534-785553 Msa0142000:intron 40.0%
!! AAGTTGGTGCAATGTCTTCT+TGG + chr1_4:785569-785588 None:intergenic 40.0%
GCACCAACTTCTTGTTGAAA+TGG - chr1_4:785579-785598 Msa0142000:intron 40.0%
AGAGCTGGATCAAGAATATC+AGG + chr1_4:785730-785749 None:intergenic 40.0%
ACATGTCGATCAAATCTACC+AGG + chr1_4:785760-785779 None:intergenic 40.0%
! CTGGATTTGGTACAACAATC+TGG + chr1_4:786015-786034 None:intergenic 40.0%
GATATTAAAGCAATAGCCCG+TGG - chr1_4:786100-786119 Msa0142000:intron 40.0%
TAATAGCAGCAATGTTCACC+AGG + chr1_4:786271-786290 None:intergenic 40.0%
CATTGCTGCTATTAAAGCTG+CGG - chr1_4:786277-786296 Msa0142000:intron 40.0%
TGTATCGGAGGAGTCAAAAA+AGG - chr1_4:786385-786404 Msa0142000:intron 40.0%
TTACAACTACAGGGAAGACT+CGG + chr1_4:786541-786560 None:intergenic 40.0%
! CTACCCCTTTCAACACTTTT+GGG + chr1_4:787250-787269 None:intergenic 40.0%
! ACTACCCCTTTCAACACTTT+TGG + chr1_4:787251-787270 None:intergenic 40.0%
!! TTGTTAGCTGGTGAGTTGAT+AGG - chr1_4:787344-787363 Msa0142000:intron 40.0%
AGGAAATGGTTCAAGGTACA+GGG + chr1_4:787401-787420 None:intergenic 40.0%
TAGGAAATGGTTCAAGGTAC+AGG + chr1_4:787402-787421 None:intergenic 40.0%
CATAACTGAGCATGCATCAA+TGG + chr1_4:787545-787564 None:intergenic 40.0%
CTTACTGCTTATCATGAGAG+CGG - chr1_4:787590-787609 Msa0142000:intron 40.0%
ATTGTTGCCCTTAATACCGA+CGG - chr1_4:787620-787639 Msa0142000:intron 40.0%
AGCTCGTCTTGATGTTTGTA+TGG - chr1_4:787751-787770 Msa0142000:intron 40.0%
GCTCGTCTTGATGTTTGTAT+GGG - chr1_4:787752-787771 Msa0142000:intron 40.0%
! CTTCACAAGGTATCAAGTTG+TGG - chr1_4:788116-788135 Msa0142000:intron 40.0%
TGTGGGATGAGTGATACAAT+CGG - chr1_4:788134-788153 Msa0142000:intron 40.0%
AGTTTAACAACCTGCAGAAC+AGG + chr1_4:788335-788354 None:intergenic 40.0%
CACGATCATATGCATCTCTA+AGG + chr1_4:788358-788377 None:intergenic 40.0%
! GTGTGAAAGCTCTCTGAAAA+AGG - chr1_4:788375-788394 Msa0142000:intron 40.0%
AGGAAAACTTCCAGAACAAC+AGG - chr1_4:788684-788703 Msa0142000:CDS 40.0%
TCTTCTTGTTCCTGTTGTTC+TGG + chr1_4:788697-788716 None:intergenic 40.0%
AGGAACAAGAAGAAGCAGAA+GGG - chr1_4:788704-788723 Msa0142000:CDS 40.0%
! GATAAGAATTGCATGGGCTA+AGG + chr1_4:788850-788869 None:intergenic 40.0%
AATCCTGCTAACGATGACAA+AGG - chr1_4:788923-788942 Msa0142000:CDS 40.0%
! AATACTACAGCACTTGCTGA+GGG - chr1_4:788957-788976 Msa0142000:CDS 40.0%
AACCTTGCTAAGAGACACTT+GGG + chr1_4:789119-789138 None:intergenic 40.0%
TAACCTTGCTAAGAGACACT+TGG + chr1_4:789120-789139 None:intergenic 40.0%
GGCGCCAATTTCATTGGATA+AGG - chr1_4:779063-779082 Msa0142000:three_prime_UTR 45.0%
ATGAGGAATGGGAAGAGAAG+AGG + chr1_4:779184-779203 None:intergenic 45.0%
AGGGGTTAGGAATGAGGAAT+GGG + chr1_4:779195-779214 None:intergenic 45.0%
! GGTTGAAAAGTGCAGAGAAG+GGG + chr1_4:779280-779299 None:intergenic 45.0%
! GGGTTGAAAAGTGCAGAGAA+GGG + chr1_4:779281-779300 None:intergenic 45.0%
GATAGGTTCGGGATTAGGTT+CGG + chr1_4:779323-779342 None:intergenic 45.0%
AGAATCGTCGGAGATAGGTT+CGG + chr1_4:779335-779354 None:intergenic 45.0%
TTAGGAGAATCGTCGGAGAT+AGG + chr1_4:779340-779359 None:intergenic 45.0%
ATGAAGAGAAGGTGGAGAGT+GGG - chr1_4:779452-779471 Msa0142000:CDS 45.0%
GAGAGTGGGGAAAAGAAAGA+TGG - chr1_4:779466-779485 Msa0142000:CDS 45.0%
AGATGGGAGATTACCGATAG+TGG - chr1_4:779483-779502 Msa0142000:CDS 45.0%
GAGCGAAAGAAGGATTGAAG+AGG - chr1_4:779530-779549 Msa0142000:CDS 45.0%
!!! AGGATTGAAGAGGGCGTTTT+CGG - chr1_4:779540-779559 Msa0142000:CDS 45.0%
TTCTTCTCCTGCCTCCAAAA+CGG + chr1_4:779583-779602 None:intergenic 45.0%
TTGGAGGCAGGAGAAGAAAT+TGG - chr1_4:779585-779604 Msa0142000:CDS 45.0%
GGACATGTAAACCAAGTGGT+TGG - chr1_4:779816-779835 Msa0142000:intron 45.0%
!! TAGTGGCTCTAAGTTCAGTC+AGG + chr1_4:780114-780133 None:intergenic 45.0%
GACTGAACTTAGAGCCACTA+AGG - chr1_4:780114-780133 Msa0142000:intron 45.0%
CAATACACTTAGGCCCTGTT+TGG - chr1_4:780439-780458 Msa0142000:CDS 45.0%
! GGTTTTCCAGATTCCTCATC+AGG + chr1_4:781024-781043 None:intergenic 45.0%
GAGGAATCTGGAAAACCTTC+TGG - chr1_4:781027-781046 Msa0142000:intron 45.0%
GCTTCATTGTTCACTAGTGG+AGG - chr1_4:781125-781144 Msa0142000:intron 45.0%
TCATTGTTCACTAGTGGAGG+TGG - chr1_4:781128-781147 Msa0142000:intron 45.0%
!! AGATGACGGAGAAATTAGGG+GGG - chr1_4:781561-781580 Msa0142000:intron 45.0%
!! TTTAAGTTGGGGGAATGAGG+TGG - chr1_4:781597-781616 Msa0142000:intron 45.0%
ATTAGGTTCGTCAACGACCT+TGG + chr1_4:781892-781911 None:intergenic 45.0%
GTTGCAAGAGTTGAAACAGC+GGG - chr1_4:782209-782228 Msa0142000:intron 45.0%
! GATGAGACTTTTCTGAACCC+TGG - chr1_4:782246-782265 Msa0142000:intron 45.0%
GCTGCTTCTCAGATATTCCA+GGG + chr1_4:782266-782285 None:intergenic 45.0%
GTTTACCGTAGCTGTTGGAT+TGG - chr1_4:782550-782569 Msa0142000:intron 45.0%
GAGAGAGATAGGGAAACTAG+AGG + chr1_4:782587-782606 None:intergenic 45.0%
ATTCCTACTGTACGTCTGTC+AGG - chr1_4:782654-782673 Msa0142000:CDS 45.0%
AAACCTGACAGACGTACAGT+AGG + chr1_4:782660-782679 None:intergenic 45.0%
CTGTACGTCTGTCAGGTTTA+TGG - chr1_4:782661-782680 Msa0142000:CDS 45.0%
AAATACATCGGAAGCTTGGG+TGG - chr1_4:782701-782720 Msa0142000:intron 45.0%
AATACATCGGAAGCTTGGGT+GGG - chr1_4:782702-782721 Msa0142000:intron 45.0%
TACCCCAAAGGAGCTAAACA+AGG - chr1_4:782760-782779 Msa0142000:intron 45.0%
CAAGGAAGTGATGCCAGAAA+AGG - chr1_4:782778-782797 Msa0142000:intron 45.0%
TGGGTTGTCAGTGAGTATCT+TGG - chr1_4:782930-782949 Msa0142000:intron 45.0%
CGACCAGTCAACAAGAAAGT+TGG - chr1_4:783143-783162 Msa0142000:intron 45.0%
ACTTCAAGAACTAATGGGGG+TGG + chr1_4:783178-783197 None:intergenic 45.0%
TGCAAAGCAAGAACTTGAGG+AGG - chr1_4:783387-783406 Msa0142000:intron 45.0%
CCAAGGCGAGTAAATTTAGC+TGG + chr1_4:783433-783452 None:intergenic 45.0%
CCAGCTAAATTTACTCGCCT+TGG - chr1_4:783430-783449 Msa0142000:intron 45.0%
GCTAAATTTACTCGCCTTGG+AGG - chr1_4:783433-783452 Msa0142000:intron 45.0%
CAGAAGAATCCCCTGAAAAG+AGG + chr1_4:783858-783877 None:intergenic 45.0%
TTTCAGGGGATTCTTCTGAC+TGG - chr1_4:783860-783879 Msa0142000:intron 45.0%
TTCAGGGGATTCTTCTGACT+GGG - chr1_4:783861-783880 Msa0142000:intron 45.0%
! AGCAGAGTTTTTCCAGTTCC+AGG + chr1_4:783890-783909 None:intergenic 45.0%
TGGAAAAACTCTGCTAGCCA+AGG - chr1_4:783895-783914 Msa0142000:intron 45.0%
AAGGACTTAAATCCGGACTC+TGG - chr1_4:783960-783979 Msa0142000:intron 45.0%
CACAGATAAGAACCAGAGTC+CGG + chr1_4:783975-783994 None:intergenic 45.0%
! TGCTATATCTGGGACCTTGA+AGG - chr1_4:784101-784120 Msa0142000:intron 45.0%
TTCTCCAGCAATAGCCTTCA+AGG + chr1_4:784118-784137 None:intergenic 45.0%
GAACCGGCACGATAGAAAAA+TGG + chr1_4:784150-784169 None:intergenic 45.0%
CATCTCCTCAAATTCCGAAC+CGG + chr1_4:784166-784185 None:intergenic 45.0%
TGGTATACCAGGATAGCATG+TGG - chr1_4:784348-784367 Msa0142000:intron 45.0%
TATACCAGGATAGCATGTGG+TGG - chr1_4:784351-784370 Msa0142000:intron 45.0%
ATACCAGGATAGCATGTGGT+GGG - chr1_4:784352-784371 Msa0142000:intron 45.0%
AACAGAGAAGGCCGCATTAA+GGG + chr1_4:784718-784737 None:intergenic 45.0%
CTCTGTTCTATTCGGACAAC+AGG - chr1_4:784731-784750 Msa0142000:CDS 45.0%
! TGCACTGAAATTGTGCTGCT+CGG - chr1_4:784791-784810 Msa0142000:CDS 45.0%
AGAATACAGATGCAGTGGCA+GGG - chr1_4:784814-784833 Msa0142000:CDS 45.0%
AACAAGAAAGGGAACCTCTG+CGG + chr1_4:784855-784874 None:intergenic 45.0%
AGTACATCTGTTGTGCCACA+AGG - chr1_4:785021-785040 Msa0142000:intron 45.0%
GTACATCTGTTGTGCCACAA+GGG - chr1_4:785022-785041 Msa0142000:intron 45.0%
AGATCTGTGGCGCTATACAT+TGG - chr1_4:785127-785146 Msa0142000:intron 45.0%
! TGTTGGCTGGTATGGATGAT+AGG - chr1_4:785275-785294 Msa0142000:intron 45.0%
CTGTTCATGCTCAGGTTTGT+TGG - chr1_4:785308-785327 Msa0142000:intron 45.0%
!! ATGCTCAGGTTTGTTGGAGT+TGG - chr1_4:785314-785333 Msa0142000:intron 45.0%
CATGTAGAAGTCCTGTGTGT+TGG + chr1_4:785435-785454 None:intergenic 45.0%
TTGATGCCGTTGGATCAACT+AGG - chr1_4:785524-785543 Msa0142000:intron 45.0%
ATCAACTAGGAAACAGTGGG+AGG - chr1_4:785537-785556 Msa0142000:intron 45.0%
TCAACTAGGAAACAGTGGGA+GGG - chr1_4:785538-785557 Msa0142000:intron 45.0%
GTACCAAATCCAGATGTACG+TGG - chr1_4:786022-786041 Msa0142000:intron 45.0%
CAAATCCAGATGTACGTGGT+CGG - chr1_4:786026-786045 Msa0142000:intron 45.0%
ACGTGGTCGGCAAGAAATAT+TGG - chr1_4:786039-786058 Msa0142000:intron 45.0%
TACACTAGATCTGGCAAACC+TGG - chr1_4:786250-786269 Msa0142000:intron 45.0%
GCTATTAAAGCTGCGGTTGA+AGG - chr1_4:786284-786303 Msa0142000:intron 45.0%
TACAACTACAGGGAAGACTC+GGG + chr1_4:786540-786559 None:intergenic 45.0%
!! TCCAGCCCAAAAGTGTTGAA+AGG - chr1_4:787242-787261 Msa0142000:CDS 45.0%
!! CCAGCCCAAAAGTGTTGAAA+GGG - chr1_4:787243-787262 Msa0142000:CDS 45.0%
!! CAGCCCAAAAGTGTTGAAAG+GGG - chr1_4:787244-787263 Msa0142000:CDS 45.0%
!! AGCTGGTGAGTTGATAGGAT+AGG - chr1_4:787349-787368 Msa0142000:intron 45.0%
ATGTGCACCGTCGGTATTAA+GGG + chr1_4:787630-787649 None:intergenic 45.0%
ATTCCTAAAGCAGATCCACG+GGG + chr1_4:787677-787696 None:intergenic 45.0%
CATTCCTAAAGCAGATCCAC+GGG + chr1_4:787678-787697 None:intergenic 45.0%
CCATTCCTAAAGCAGATCCA+CGG + chr1_4:787679-787698 None:intergenic 45.0%
CGTCTTGATGTTTGTATGGG+AGG - chr1_4:787755-787774 Msa0142000:intron 45.0%
TACCATGTATTGCGCAAGCT+CGG + chr1_4:787855-787874 None:intergenic 45.0%
! TATGCTGCTTCCCTGTTATG+TGG - chr1_4:787876-787895 Msa0142000:intron 45.0%
GCTGCACTTTCCACATAACA+GGG + chr1_4:787889-787908 None:intergenic 45.0%
AGCTGCACTTTCCACATAAC+AGG + chr1_4:787890-787909 None:intergenic 45.0%
CGTGACTGCATTTCAGAACT+TGG + chr1_4:788182-788201 None:intergenic 45.0%
GACGATTACTTCTCCCGTAT+CGG - chr1_4:788659-788678 Msa0142000:CDS 45.0%
ACGATTACTTCTCCCGTATC+GGG - chr1_4:788660-788679 Msa0142000:CDS 45.0%
! GAAGTTTTCCTTCCCGATAC+GGG + chr1_4:788675-788694 None:intergenic 45.0%
! GGAAGTTTTCCTTCCCGATA+CGG + chr1_4:788676-788695 None:intergenic 45.0%
CAGGAACAAGAAGAAGCAGA+AGG - chr1_4:788703-788722 Msa0142000:CDS 45.0%
GGAACAAGAAGAAGCAGAAG+GGG - chr1_4:788705-788724 Msa0142000:CDS 45.0%
AGCAGAAGGGGATCTTGTAT+TGG - chr1_4:788717-788736 Msa0142000:CDS 45.0%
! AGAATTGCATGGGCTAAGGA+GGG + chr1_4:788846-788865 None:intergenic 45.0%
! AAGAATTGCATGGGCTAAGG+AGG + chr1_4:788847-788866 None:intergenic 45.0%
! GAATACTACAGCACTTGCTG+AGG - chr1_4:788956-788975 Msa0142000:CDS 45.0%
!!! TTTTTTTTTTTTTTTTATCT+AGG + chr1_4:783773-783792 None:intergenic 5.0%
!! ATAAAAATGATAAATAAATT+TGG + chr1_4:785670-785689 None:intergenic 5.0%
TACGACGGCGCCAATTTCAT+TGG - chr1_4:779057-779076 Msa0142000:three_prime_UTR 50.0%
GAGGGGTTAGGAATGAGGAA+TGG + chr1_4:779196-779215 None:intergenic 50.0%
GAGTAGAGGGGTTAGGAATG+AGG + chr1_4:779201-779220 None:intergenic 50.0%
! CGGGTTGAAAAGTGCAGAGA+AGG + chr1_4:779282-779301 None:intergenic 50.0%
! GAGTGGGGAAGTGTAGTATC+GGG + chr1_4:779301-779320 None:intergenic 50.0%
! GGAGTGGGGAAGTGTAGTAT+CGG + chr1_4:779302-779321 None:intergenic 50.0%
TTCGGGATTAGGTTCGGAGT+GGG + chr1_4:779317-779336 None:intergenic 50.0%
TCGGAGATAGGTTCGGGATT+AGG + chr1_4:779328-779347 None:intergenic 50.0%
GAATCGTCGGAGATAGGTTC+GGG + chr1_4:779334-779353 None:intergenic 50.0%
GATGAAGAGAAGGTGGAGAG+TGG - chr1_4:779451-779470 Msa0142000:CDS 50.0%
TGAAGAGAAGGTGGAGAGTG+GGG - chr1_4:779453-779472 Msa0142000:CDS 50.0%
CTTTGGGTGAGAGCGAAAGA+AGG - chr1_4:779520-779539 Msa0142000:CDS 50.0%
!!! GAAGAGGGCGTTTTCGGAAT+TGG - chr1_4:779546-779565 Msa0142000:CDS 50.0%
!! TGGTTGATTGGTGGCCGTTT+TGG - chr1_4:779566-779585 Msa0142000:CDS 50.0%
!! TTGATTGGTGGCCGTTTTGG+AGG - chr1_4:779569-779588 Msa0142000:CDS 50.0%
TTACTGAGGCCGATGCGAAT+CGG - chr1_4:779617-779636 Msa0142000:intron 50.0%
!! AGCATCCAACCGATTCGCAT+CGG + chr1_4:779629-779648 None:intergenic 50.0%
ATCACTCGAGTCCAACCACT+TGG + chr1_4:779830-779849 None:intergenic 50.0%
TCTCTAACTAAGGCCCCGTT+TGG + chr1_4:780061-780080 None:intergenic 50.0%
TGAAGAAAGGGACAGAGCTG+TGG - chr1_4:780933-780952 Msa0142000:intron 50.0%
!! ACCTTCTGGAATTCCCTCCT+TGG - chr1_4:781041-781060 Msa0142000:intron 50.0%
ACCAAGGAGGGAATTCCAGA+AGG + chr1_4:781045-781064 None:intergenic 50.0%
!! TGAGACTTGGTTCTGCCTCT+CGG + chr1_4:781488-781507 None:intergenic 50.0%
GGGGGAATGAGGTGGAAAAA+TGG - chr1_4:781605-781624 Msa0142000:intron 50.0%
GGCTGCTTCTCAGATATTCC+AGG + chr1_4:782267-782286 None:intergenic 50.0%
CCAGACCAATCCAACAGCTA+CGG + chr1_4:782558-782577 None:intergenic 50.0%
!! TTGGGTGGGATTGGTTCTTC+AGG - chr1_4:782716-782735 Msa0142000:intron 50.0%
!! GGGATTGGTTCTTCAGGTGT+TGG - chr1_4:782722-782741 Msa0142000:intron 50.0%
AGTTTCCTTATCCAGTGCCC+CGG + chr1_4:783012-783031 None:intergenic 50.0%
GCAAGAACTTGAGGAGGTTG+TGG - chr1_4:783393-783412 Msa0142000:intron 50.0%
TCAGGGGATTCTTCTGACTG+GGG - chr1_4:783862-783881 Msa0142000:intron 50.0%
AAGGCTATTGCTGGAGAAGC+CGG - chr1_4:784120-784139 Msa0142000:intron 50.0%
AAGTTGCCATGACTGAACGG+AGG - chr1_4:784625-784644 Msa0142000:intron 50.0%
GAACAGAGAAGGCCGCATTA+AGG + chr1_4:784719-784738 None:intergenic 50.0%
GCGGCCTTCTCTGTTCTATT+CGG - chr1_4:784723-784742 Msa0142000:intron 50.0%
CTCGGAGAATACAGATGCAG+TGG - chr1_4:784809-784828 Msa0142000:CDS 50.0%
GAGAATACAGATGCAGTGGC+AGG - chr1_4:784813-784832 Msa0142000:CDS 50.0%
TGTCTGGACTCATTCCCTTG+TGG + chr1_4:785039-785058 None:intergenic 50.0%
!! GGTTTGTTGGAGTTGGTGCT+CGG - chr1_4:785321-785340 Msa0142000:intron 50.0%
GGTGCAATGTCTTCTTGGTG+TGG + chr1_4:785564-785583 None:intergenic 50.0%
! GGATGGGTTTGAGCAGAATG+AGG - chr1_4:785600-785619 Msa0142000:intron 50.0%
TCAATCCAGGTCGTTCTACC+CGG - chr1_4:785940-785959 Msa0142000:CDS 50.0%
ATTAACCGGGTAGAACGACC+TGG + chr1_4:785948-785967 None:intergenic 50.0%
CGACCACGTACATCTGGATT+TGG + chr1_4:786028-786047 None:intergenic 50.0%
CGGCTGTAGGTTTATCATGC+AGG + chr1_4:786072-786091 None:intergenic 50.0%
! ATTGAATCCTGGGGTACCAC+GGG + chr1_4:786119-786138 None:intergenic 50.0%
! CATTGAATCCTGGGGTACCA+CGG + chr1_4:786120-786139 None:intergenic 50.0%
GTGGTACCCCAGGATTCAAT+GGG - chr1_4:786119-786138 Msa0142000:intron 50.0%
TGGTACCCCAGGATTCAATG+GGG - chr1_4:786120-786139 Msa0142000:intron 50.0%
! CCCTTTCAACACTTTTGGGC+TGG + chr1_4:787246-787265 None:intergenic 50.0%
GATGTGCACCGTCGGTATTA+AGG + chr1_4:787631-787650 None:intergenic 50.0%
GTGAATTGGATGTGCACCGT+CGG + chr1_4:787639-787658 None:intergenic 50.0%
CGGTGCACATCCAATTCACA+AGG - chr1_4:787640-787659 Msa0142000:intron 50.0%
!! CCGTGGATCTGCTTTAGGAA+TGG - chr1_4:787676-787695 Msa0142000:intron 50.0%
GGTCGGGATAATGTCACAAC+TGG - chr1_4:787803-787822 Msa0142000:intron 50.0%
TACCGAGCTTGCGCAATACA+TGG - chr1_4:787850-787869 Msa0142000:intron 50.0%
! GCAGTCACGTATTGATGCAG+AGG - chr1_4:788193-788212 Msa0142000:intron 50.0%
! CTGAGCTTTTCCTGTTCTGC+AGG - chr1_4:788322-788341 Msa0142000:intron 50.0%
TTACTTCTCCCGTATCGGGA+AGG - chr1_4:788664-788683 Msa0142000:CDS 50.0%
GGACCTTTGTCATCGTTAGC+AGG + chr1_4:788929-788948 None:intergenic 50.0%
GACCCAAGTGTCTCTTAGCA+AGG - chr1_4:789114-789133 Msa0142000:five_prime_UTR 50.0%
AATTGGCGCCGTCGTACATG+TGG + chr1_4:779053-779072 None:intergenic 55.0%
CGCGTGGGATTGAAGTGATG+AGG + chr1_4:779232-779251 None:intergenic 55.0%
GTGCAGAGAAGGGGAGTGAA+GGG + chr1_4:779271-779290 None:intergenic 55.0%
AGTGCAGAGAAGGGGAGTGA+AGG + chr1_4:779272-779291 None:intergenic 55.0%
TCGGGATTAGGTTCGGAGTG+GGG + chr1_4:779316-779335 None:intergenic 55.0%
GTTCGGGATTAGGTTCGGAG+TGG + chr1_4:779318-779337 None:intergenic 55.0%
GACAGAGCTGTGGACAGTAG+AGG - chr1_4:780943-780962 Msa0142000:intron 55.0%
GAGGCGGTTCCTCCGAAATT+CGG + chr1_4:781445-781464 None:intergenic 55.0%
GAGTTGAAACAGCGGGCATC+TGG - chr1_4:782216-782235 Msa0142000:intron 55.0%
!! CCGTAGCTGTTGGATTGGTC+TGG - chr1_4:782555-782574 Msa0142000:intron 55.0%
ATCGGAAGCTTGGGTGGGAT+TGG - chr1_4:782707-782726 Msa0142000:intron 55.0%
GTCATGTTAACCAGTGCCCC+CGG - chr1_4:782990-783009 Msa0142000:intron 55.0%
TCATGTTAACCAGTGCCCCC+GGG - chr1_4:782991-783010 Msa0142000:intron 55.0%
TTTCCTTATCCAGTGCCCCG+GGG + chr1_4:783010-783029 None:intergenic 55.0%
GTTTCCTTATCCAGTGCCCC+GGG + chr1_4:783011-783030 None:intergenic 55.0%
CCTTTGGCAGCTTTCCTCCA+AGG + chr1_4:783450-783469 None:intergenic 55.0%
CCTTGGAGGAAAGCTGCCAA+AGG - chr1_4:783447-783466 Msa0142000:intron 55.0%
! ATTCTTCTGACTGGGGCACC+TGG - chr1_4:783869-783888 Msa0142000:intron 55.0%
GGGACCTTGAAGGCTATTGC+TGG - chr1_4:784111-784130 Msa0142000:intron 55.0%
!! TCGTGCCGGTTCGGAATTTG+AGG - chr1_4:784158-784177 Msa0142000:intron 55.0%
CATCCCACCACATGCTATCC+TGG + chr1_4:784358-784377 None:intergenic 55.0%
! CAGGATAGCATGTGGTGGGA+TGG - chr1_4:784356-784375 Msa0142000:intron 55.0%
TTGCCATGACTGAACGGAGG+AGG - chr1_4:784628-784647 Msa0142000:intron 55.0%
TGCCATGACTGAACGGAGGA+GGG - chr1_4:784629-784648 Msa0142000:intron 55.0%
TTCCCTCCTCCGTTCAGTCA+TGG + chr1_4:784634-784653 None:intergenic 55.0%
AGATGCAGTGGCAGGGTTGA+CGG - chr1_4:784821-784840 Msa0142000:CDS 55.0%
! GATCCAGCTCTAACGAGACC+TGG - chr1_4:785739-785758 Msa0142000:intron 55.0%
CTACCAGGTCTCGTTAGAGC+TGG + chr1_4:785745-785764 None:intergenic 55.0%
TCTTGCCGACCACGTACATC+TGG + chr1_4:786034-786053 None:intergenic 55.0%
CGTGGTACCCCAGGATTCAA+TGG - chr1_4:786118-786137 Msa0142000:intron 55.0%
ACCTGCCCCATTGAATCCTG+GGG + chr1_4:786128-786147 None:intergenic 55.0%
CACCTGCCCCATTGAATCCT+GGG + chr1_4:786129-786148 None:intergenic 55.0%
TCACCTGCCCCATTGAATCC+TGG + chr1_4:786130-786149 None:intergenic 55.0%
AAGGCAACAATCATGCCCCG+TGG - chr1_4:787659-787678 Msa0142000:intron 55.0%
ATGCCCCGTGGATCTGCTTT+AGG - chr1_4:787671-787690 Msa0142000:intron 55.0%
!!! TTGGTGGCCGTTTTGGAGGC+AGG - chr1_4:779573-779592 Msa0142000:CDS 60.0%
TGAGGCCGATGCGAATCGGT+TGG - chr1_4:779621-779640 Msa0142000:intron 60.0%
AGTGGAGGTGGAGTGCAACC+AGG - chr1_4:781140-781159 Msa0142000:intron 60.0%
TGAGAAGCAGCCGTTGCACG+TGG - chr1_4:782275-782294 Msa0142000:intron 60.0%
GCAGCCGTTGCACGTGGTTA+TGG - chr1_4:782281-782300 Msa0142000:intron 60.0%
CATGTTAACCAGTGCCCCCG+GGG - chr1_4:782992-783011 Msa0142000:intron 60.0%
TTCCTTATCCAGTGCCCCGG+GGG + chr1_4:783009-783028 None:intergenic 60.0%
ACCCCAGGATTCAATGGGGC+AGG - chr1_4:786124-786143 Msa0142000:intron 60.0%
AGGGGAGTGAAGGGAACGCG+CGG + chr1_4:779262-779281 None:intergenic 65.0%
! CTGACTGGGGCACCTGGAAC+TGG - chr1_4:783875-783894 Msa0142000:intron 65.0%
TGCAGTGGCAGGGTTGACGG+TGG - chr1_4:784824-784843 Msa0142000:CDS 65.0%
GCAATAGCCCGTGGTACCCC+AGG - chr1_4:786109-786128 Msa0142000:intron 65.0%
TGAAGGGAACGCGCGGGTGG+AGG + chr1_4:779255-779274 None:intergenic 70.0%
GAGTGAAGGGAACGCGCGGG+TGG + chr1_4:779258-779277 None:intergenic 70.0%
GGGGAGTGAAGGGAACGCGC+GGG + chr1_4:779261-779280 None:intergenic 70.0%
!! TGCCCCCGGGGCACTGGATA+AGG - chr1_4:783004-783023 Msa0142000:intron 70.0%
TGACGGTGGCTGCTCCGCAG+AGG - chr1_4:784838-784857 Msa0142000:intron 70.0%
AACCAGTGCCCCCGGGGCAC+TGG - chr1_4:782998-783017 Msa0142000:intron 75.0%
! ATCCAGTGCCCCGGGGGCAC+TGG + chr1_4:783003-783022 None:intergenic 75.0%
!! ACGCGCGGGTGGAGGCGCGT+GGG + chr1_4:779247-779266 None:intergenic 80.0%
!! AACGCGCGGGTGGAGGCGCG+TGG + chr1_4:779248-779267 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 779039 789155 779039 ID=Msa0142000;Name=Msa0142000
chr1_4 mRNA 779039 789155 779039 ID=Msa0142000-mRNA-1;Parent=Msa0142000;Name=Msa0142000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=109|0.92|1|1|1|1|15|411|737
chr1_4 exon 779039 779605 779039 ID=Msa0142000-mRNA-1:exon:211;Parent=Msa0142000-mRNA-1
chr1_4 exon 780323 780604 780323 ID=Msa0142000-mRNA-1:exon:210;Parent=Msa0142000-mRNA-1
chr1_4 exon 781788 781936 781788 ID=Msa0142000-mRNA-1:exon:209;Parent=Msa0142000-mRNA-1
chr1_4 exon 782049 782178 782049 ID=Msa0142000-mRNA-1:exon:208;Parent=Msa0142000-mRNA-1
chr1_4 exon 782417 782497 782417 ID=Msa0142000-mRNA-1:exon:207;Parent=Msa0142000-mRNA-1
chr1_4 exon 782573 782698 782573 ID=Msa0142000-mRNA-1:exon:206;Parent=Msa0142000-mRNA-1
chr1_4 exon 782815 782872 782815 ID=Msa0142000-mRNA-1:exon:205;Parent=Msa0142000-mRNA-1
chr1_4 exon 784010 784071 784010 ID=Msa0142000-mRNA-1:exon:204;Parent=Msa0142000-mRNA-1
chr1_4 exon 784278 784328 784278 ID=Msa0142000-mRNA-1:exon:203;Parent=Msa0142000-mRNA-1
chr1_4 exon 784726 784845 784726 ID=Msa0142000-mRNA-1:exon:202;Parent=Msa0142000-mRNA-1
chr1_4 exon 785395 785518 785395 ID=Msa0142000-mRNA-1:exon:201;Parent=Msa0142000-mRNA-1
chr1_4 exon 785618 785703 785618 ID=Msa0142000-mRNA-1:exon:200;Parent=Msa0142000-mRNA-1
chr1_4 exon 785892 785984 785892 ID=Msa0142000-mRNA-1:exon:199;Parent=Msa0142000-mRNA-1
chr1_4 exon 787132 787285 787132 ID=Msa0142000-mRNA-1:exon:198;Parent=Msa0142000-mRNA-1
chr1_4 exon 788505 789155 788505 ID=Msa0142000-mRNA-1:exon:197;Parent=Msa0142000-mRNA-1
chr1_4 five_prime_UTR 789047 789155 789047 ID=Msa0142000-mRNA-1:five_prime_utr;Parent=Msa0142000-mRNA-1
chr1_4 CDS 788505 789046 788505 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 787132 787285 787132 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 785892 785984 785892 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 785618 785703 785618 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 785395 785518 785395 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 784726 784845 784726 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 784278 784328 784278 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 784010 784071 784010 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 782815 782872 782815 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 782573 782698 782573 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 782417 782497 782417 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 782049 782178 782049 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 781788 781936 781788 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 780323 780604 780323 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 CDS 779450 779605 779450 ID=Msa0142000-mRNA-1:cds;Parent=Msa0142000-mRNA-1
chr1_4 three_prime_UTR 779039 779449 779039 ID=Msa0142000-mRNA-1:three_prime_utr;Parent=Msa0142000-mRNA-1
Gene Sequence

>Msa0142000

ATGGCAACACTTCAAGCTTCTCTTCTCTCTAAACCTCTTCTCTTCCCATTCCTCATTCCTAACCCCTCTACTCTTCTTAAACCTCATCACTTCAATCCCACGCGCCTCCACCCGCGCGTTCCCTTCACTCCCCTTCTCTGCACTTTTCAACCCGATACTACACTTCCCCACTCCGAACCTAATCCCGAACCTATCTCCGACGATTCTCCTAACCTAGAACCGTTAAATTCAACTGAAAACGATTCTGTTACGATTCTTGATTCAAATTCTTCGAATGAATCGAATTCGAGATTTGAAAGTGTTGATGAAGAGAAGGTGGAGAGTGGGGAAAAGAAAGATGGGAGATTACCGATAGTGGTGTTTTTGATTGGGCTTTGGGTGAGAGCGAAAGAAGGATTGAAGAGGGCGTTTTCGGAATTGGTTGATTGGTGGCCGTTTTGGAGGCAGGAGAAGAAATTGGCGAAGTTGATTACTGAGGCCGATGCGAATCGGTTGGATGCTGCTAAGCAAACTGCGCTTTTTGTTGAGCTTAATAAGCACAGTCCTGAGTCTGTGATAAAGATATTTGAAGAAAGGGACAGAGCTGTGGACAGTAGAGGAGTTGCAGAATATCTTCGAGCACTAGTGGTCACTAATGCTATTGCAGAATATCTTCCTGATGAGGAATCTGGAAAACCTTCTGGAATTCCCTCCTTGTTGCAAGAGTTGAAACAGCGGGCATCTGGTAACATAGATGAGACTTTTCTGAACCCTGGAATATCTGAGAAGCAGCCGTTGCACGTGGTTATGGTTGATCAGAAAGTATCAAACAAGTCACGTTTCGCACAAGAGCTTATCTCAACTATTTTGTTTACCGTAGCTGTTGGATTGGTCTGGTTTATGGGTGCTGCTGCACTTCAAAAATACATCGGAAGCTTGGGTGGGATTGGTTCTTCAGGTGTTGGTTCAAGTTCATCTTATACCCCAAAGGAGCTAAACAAGGAAGTGATGCCAGAAAAGAATGTAAAAACTTTTAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAGGTTGTGGAGTACCTAAAAAATCCAGCTAAATTTACTCGCCTTGGAGGAAAGCTGCCAAAGGGGATTCTTCTGACTGGGGCACCTGGAACTGGAAAAACTCTGCTAGCCAAGGCTATTGCTGGAGAAGCCGGTGTTCCATTTTTCTATCGTGCCGGTTCGGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGGCGTGTAAGATCGTTATTTCAAGCAGCCAAAAAGAAGGCTCCTTGCATTATTTTCATTGATGAAATTGATGCCGTTGGATCAACTAGGAAACAGTGGGAGGGCCACACCAAGAAGACATTGCACCAACTTCTTGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCTGCAACAAACTTGCCTGATATTCTTGATCCAGCTCTAACGAGACCTGGTAGATTTGATCGACATATTGTTGTACCAAATCCAGATGTACGTGGTCGGCAAGAAATATTGGAACTCTACCTGCATGATAAACCTACAGCCGATAATGTAGATATTAAAGCAATAGCCCGTGGTACCCCAGGATTCAATGGGGCAGATCTGGCAAACCTGGTGAACATTGCTGCTATTAAAGCTGCGGTTGAAGGTGCAGAGAAATTAACAGCTTCTCAGTTGGAGTTTGCAAAAGACCGAATAATTATGGGTACAGAGCGAAAAACAATGTTTGTATCGGAGGAGTCAAAAAAGCTTACTGCTTATCATGAGAGCGGCCATGCAATTGTTGCCCTTAATACCGACGGTGCACATCCAATTCACAAGGCAACAATCATGCCCCGTGGATCTGCTTTAGGAATGGTTACTCAGCTTCCCTCAAATGATGAGACATCAATAAGTAAGAAGCAGTTGTTAGCTCGTCTTGATGTTTGTATGGGAGGACGAGTTGCAGAAGAACTTATCTTTGGTCGGGATAATGTCACAACTGGAGCTAGTAGTGATCTTCAATCAGCTACCGAGCTTGCGCAATACATGCATGAGAAGGCATTACATACGCTTGCAAATGCATTATTAGAGTGTGAGACACTTAGTGCAGAAGAAATCAGACGATTACTTCTCCCGTATCGGGAAGGAAAACTTCCAGAACAACAGGAACAAGAAGAAGCAGAAGGGGATCTTGTATTGGCGTAA
Protein sequence

>Msa0142000

MATLQASLLSKPLLFPFLIPNPSTLLKPHHFNPTRLHPRVPFTPLLCTFQPDTTLPHSEPNPEPISDDSPNLEPLNSTENDSVTILDSNSSNESNSRFESVDEEKVESGEKKDGRLPIVVFLIGLWVRAKEGLKRAFSELVDWWPFWRQEKKLAKLITEADANRLDAAKQTALFVELNKHSPESVIKIFEERDRAVDSRGVAEYLRALVVTNAIAEYLPDEESGKPSGIPSLLQELKQRASGNIDETFLNPGISEKQPLHVVMVDQKVSNKSRFAQELISTILFTVAVGLVWFMGAAALQKYIGSLGGIGSSGVGSSSSYTPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLHDKPTADNVDIKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLTASQLEFAKDRIIMGTERKTMFVSEESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSNDETSISKKQLLARLDVCMGGRVAEELIFGRDNVTTGASSDLQSATELAQYMHEKALHTLANALLECETLSAEEIRRLLLPYREGKLPEQQEQEEAEGDLVLA*