AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0979020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979020 MtrunA17_Chr6g0457911 89.560 182 13 2 1 182 1 176 1.79e-97 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979020 AT1G26180.2 54.118 170 63 5 25 182 21 187 8.10e-53 167
Msa0979020 AT1G26180.1 59.028 144 47 3 49 182 46 187 6.03e-52 168

Find 75 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATACCCTATTTGGGATTT+TGG 0.098426 6_4:-15349759 Msa0979020:intron
TCCATGTTTGCTGCTCTTAC+TGG 0.140429 6_4:-15354867 Msa0979020:CDS
AACTTCATATATACCCTATT+TGG 0.146035 6_4:-15349767 Msa0979020:three_prime_UTR
GGTATAAACTATGTCAATTT+AGG 0.164030 6_4:+15349288 None:intergenic
AATGAGATTCAAATTGAATA+TGG 0.265276 6_4:+15349338 None:intergenic
AACATACCAAAATCCCAAAT+AGG 0.295628 6_4:+15349753 None:intergenic
TTCTGATACACCTCCCCTTC+TGG 0.296139 6_4:+15354912 None:intergenic
TTAGAGTTCACTTTACATTA+TGG 0.296351 6_4:+15349267 None:intergenic
AAGAGAAGCGTGAATGTTTA+TGG 0.304499 6_4:+15349835 None:intergenic
TAAAAGGTCCCAATCAAAAT+TGG 0.317537 6_4:+15349235 None:intergenic
CAACAATGATGAAGAAGTTA+AGG 0.331621 6_4:-15354943 Msa0979020:CDS
GAGAAAGTGGGAAGTGGGTT+TGG 0.355078 6_4:+15355080 None:intergenic
ACTTCATATATACCCTATTT+GGG 0.358911 6_4:-15349766 Msa0979020:three_prime_UTR
TTGTTTCAGGTTGTGTTGAA+TGG 0.360782 6_4:-15349469 Msa0979020:intron
AAGTGGGTTTGGTTTGGAAA+TGG 0.378361 6_4:+15355091 None:intergenic
AGTGGGAAGTGGGTTTGGTT+TGG 0.383262 6_4:+15355085 None:intergenic
GAGTAATGCTCTTGCTATTG+AGG 0.388464 6_4:-15354829 Msa0979020:intron
CAAGGTCGTGTTTGGTTCGT+TGG 0.393160 6_4:+15355176 None:intergenic
AAAGATTTCAAGGTCGTGTT+TGG 0.396799 6_4:+15355168 None:intergenic
AGGGTAAAATTGTACATAAA+AGG 0.406570 6_4:+15349219 None:intergenic
AGTAAAAGCTCTAACCTATC+TGG 0.408668 6_4:-15351623 Msa0979020:intron
CCATGTTTGCTGCTCTTACT+GGG 0.408995 6_4:-15354866 Msa0979020:CDS
AAAGAACAGCATTGTAATCA+AGG 0.409755 6_4:+15349199 None:intergenic
ACATACCAAAATCCCAAATA+GGG 0.416860 6_4:+15349754 None:intergenic
AAGGGAAAACATACTAGCTT+TGG 0.429407 6_4:-15350112 Msa0979020:intron
CACGTTCATTCTCTCTTCAA+AGG 0.430651 6_4:-15354992 Msa0979020:CDS
TGGAGAGAGAAAGTGGGAAG+TGG 0.431283 6_4:+15355074 None:intergenic
CTCATCGACGATATCACTAT+TGG 0.431360 6_4:+15351808 None:intergenic
GTTACACGATGGGTACTTTG+TGG 0.433180 6_4:-15350699 Msa0979020:CDS
AGTTTGAGAGGGAGTTTCAA+TGG 0.436774 6_4:+15355020 None:intergenic
CAGCTTAAGCATGGTATAGT+TGG 0.437761 6_4:-15350721 Msa0979020:CDS
CTTCACTAAAATTGCCAAGA+TGG 0.439490 6_4:-15349381 Msa0979020:three_prime_UTR
GGAGAGAGAAAGTGGGAAGT+GGG 0.447148 6_4:+15355075 None:intergenic
TTGTTTATGTTATGTATTCA+AGG 0.449666 6_4:+15349163 None:intergenic
GTAAGAGTGGAGAGAGAAAG+TGG 0.456947 6_4:+15355067 None:intergenic
TAAAAGCAAGCTCACCAGAT+AGG 0.459161 6_4:+15351609 None:intergenic
ATAGCTTTCTCTAACCATCT+TGG 0.460577 6_4:+15349367 None:intergenic
GTTTGCTGCTCTTACTGGGT+TGG 0.463808 6_4:-15354862 Msa0979020:CDS
AGGAGAAGATGAAGGGAGAA+TGG 0.470771 6_4:+15355114 None:intergenic
ACGTTCATTCTCTCTTCAAA+GGG 0.480590 6_4:-15354991 Msa0979020:CDS
ACATTTGTGCTGACCGCTGC+CGG 0.481553 6_4:-15349812 Msa0979020:three_prime_UTR
AGTTTCAATGGTTGAGATGG+TGG 0.483114 6_4:+15355032 None:intergenic
TGATGCTGGAAGGAAAACTA+TGG 0.488900 6_4:-15351776 Msa0979020:intron
TGGGTTTGGTTTGGAAATGG+AGG 0.489626 6_4:+15355094 None:intergenic
TAGTGATATCGTCGATGAGA+TGG 0.490271 6_4:-15351804 Msa0979020:CDS
CCCAGTAAGAGCAGCAAACA+TGG 0.492125 6_4:+15354866 None:intergenic
GGAAATGGAGGAGAAGATGA+AGG 0.492474 6_4:+15355106 None:intergenic
ATCATGGAGAAAAGATTTCA+AGG 0.510342 6_4:+15355158 None:intergenic
GAAGAGAGAGAAAGTAAGAG+TGG 0.511740 6_4:+15355054 None:intergenic
TTTCAGGTTGTGTTGAATGG+TGG 0.524739 6_4:-15349466 Msa0979020:intron
TAAGAGTGGAGAGAGAAAGT+GGG 0.524810 6_4:+15355068 None:intergenic
ATGAGATGGGGTATTGATGC+TGG 0.532407 6_4:-15351790 Msa0979020:CDS
AACGTGGTTTGAGTTTGAGA+GGG 0.540505 6_4:+15355009 None:intergenic
GGGAGTTTCAATGGTTGAGA+TGG 0.541583 6_4:+15355029 None:intergenic
GAACGTGGTTTGAGTTTGAG+AGG 0.544218 6_4:+15355008 None:intergenic
TGTTTATGTTATGTATTCAA+GGG 0.545542 6_4:+15349164 None:intergenic
GTATATATGAAGTTCATTGA+AGG 0.554645 6_4:+15349776 None:intergenic
TAAGGATTTGTCACCAGAAG+GGG 0.556175 6_4:-15354925 Msa0979020:CDS
AGTGATATCGTCGATGAGAT+GGG 0.559276 6_4:-15351803 Msa0979020:CDS
AATTGAATTGACACCGGCAG+CGG 0.560000 6_4:+15349799 None:intergenic
GTTAAGGATTTGTCACCAGA+AGG 0.563643 6_4:-15354927 Msa0979020:CDS
TCTTTCATGCAGCTTAAGCA+TGG 0.575982 6_4:-15350730 Msa0979020:intron
GAAATGGAGGAGAAGATGAA+GGG 0.581880 6_4:+15355107 None:intergenic
TTAAGGATTTGTCACCAGAA+GGG 0.582153 6_4:-15354926 Msa0979020:CDS
GGTATAGTTGGTTACACGAT+GGG 0.589013 6_4:-15350709 Msa0979020:CDS
AAGAACAGCATTGTAATCAA+GGG 0.592784 6_4:+15349200 None:intergenic
GGATTTGTCACCAGAAGGGG+AGG 0.593407 6_4:-15354922 Msa0979020:CDS
CTTTGAAGAGAGAATGAACG+TGG 0.604224 6_4:+15354993 None:intergenic
GTATCAGAAGACACTTCAGT+TGG 0.624633 6_4:-15354898 Msa0979020:CDS
TGAAGGAATTGAATTGACAC+CGG 0.631232 6_4:+15349793 None:intergenic
ACACGATGGGTACTTTGTGG+AGG 0.650422 6_4:-15350696 Msa0979020:intron
TGGTATAGTTGGTTACACGA+TGG 0.659678 6_4:-15350710 Msa0979020:CDS
GTGATATCGTCGATGAGATG+GGG 0.662980 6_4:-15351802 Msa0979020:CDS
GATGGGGTATTGATGCTGGA+AGG 0.663700 6_4:-15351786 Msa0979020:CDS
TGAAATCAAGACAAAGCCAA+CGG 0.676008 6_4:+15350146 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTGTGAATTAAAATT+TGG - chr6_4:15350126-15350145 Msa0979020:three_prime_UTR 10.0%
!! TTAATTGTGAATTAAAATTT+GGG - chr6_4:15350127-15350146 Msa0979020:three_prime_UTR 10.0%
!! TGTTATTGTTAATCAAAATT+TGG - chr6_4:15349744-15349763 Msa0979020:intron 15.0%
!! GTTATTGTTAATCAAAATTT+GGG - chr6_4:15349745-15349764 Msa0979020:intron 15.0%
!!! TGTTATTTTTGGTTTAAAAT+TGG - chr6_4:15350485-15350504 Msa0979020:intron 15.0%
!! TGTTATTGTTAATCAAAATT+TGG - chr6_4:15349744-15349763 Msa0979020:intron 15.0%
!! GTTATTGTTAATCAAAATTT+GGG - chr6_4:15349745-15349764 Msa0979020:intron 15.0%
!! TAATGAATTTGTATTATCTT+TGG - chr6_4:15350915-15350934 Msa0979020:intron 15.0%
!!! TATTACTTTTGATTGAAAAT+TGG - chr6_4:15351726-15351745 Msa0979020:intron 15.0%
!!! AAAGTAGAATAATAAGTTTT+TGG - chr6_4:15351931-15351950 Msa0979020:intron 15.0%
!! TAAAATCTAAATGTTTGAAA+CGG - chr6_4:15352012-15352031 Msa0979020:intron 15.0%
!!! TTGCAATATAAAGATTTTAA+AGG + chr6_4:15352193-15352212 None:intergenic 15.0%
!!! TACTGTTTTCTTTATTTTTT+AGG - chr6_4:15352390-15352409 Msa0979020:intron 15.0%
!!! TTTATTTTTTAGGTTAGAAT+TGG - chr6_4:15352400-15352419 Msa0979020:intron 15.0%
!!! TTAGGTATTTCATTTATTTT+TGG - chr6_4:15352468-15352487 Msa0979020:intron 15.0%
!!! TATGTTTTTTTTATAGTTGT+CGG - chr6_4:15352822-15352841 Msa0979020:intron 15.0%
!! GATTATATTTATATTTGATG+AGG - chr6_4:15352928-15352947 Msa0979020:intron 15.0%
!! GTTTATAAATGATTAGTATA+TGG + chr6_4:15352966-15352985 None:intergenic 15.0%
!!! CATAAATGTCATAATTTTAT+TGG + chr6_4:15353118-15353137 None:intergenic 15.0%
!! TTAATTCATATGCAAAATAT+TGG + chr6_4:15353439-15353458 None:intergenic 15.0%
!!! GTTTTTGTGAATTCAAATTT+TGG - chr6_4:15349563-15349582 Msa0979020:intron 20.0%
!!! TGAATTCAAATTTTGGTTTT+TGG - chr6_4:15349570-15349589 Msa0979020:intron 20.0%
!!! TTGGTTTTTGGTTTTTTTAT+AGG - chr6_4:15349582-15349601 Msa0979020:intron 20.0%
!!! AAATTGGATTTTTATTTGTG+TGG - chr6_4:15349680-15349699 Msa0979020:intron 20.0%
!!! AAATTGGATTTTTATTTGTG+TGG - chr6_4:15349680-15349699 Msa0979020:intron 20.0%
!! GTTACTGTTAATCAAAATTT+AGG - chr6_4:15349902-15349921 Msa0979020:intron 20.0%
!!! ATAATGGGTTTGTAATAATT+TGG - chr6_4:15349948-15349967 Msa0979020:intron 20.0%
!! TGGTTAAGGAAATATAATAA+TGG - chr6_4:15350157-15350176 Msa0979020:CDS 20.0%
!! GGTTAAGGAAATATAATAAT+GGG - chr6_4:15350158-15350177 Msa0979020:CDS 20.0%
!!! GTTATTGAGAATCAAAATTT+TGG - chr6_4:15350696-15350715 Msa0979020:intron 20.0%
!! TGATTAACTTTATGAAACAT+TGG - chr6_4:15350946-15350965 Msa0979020:intron 20.0%
!!! GAGTGTATTGTTTTTTATAT+AGG - chr6_4:15351051-15351070 Msa0979020:intron 20.0%
!!! GTTTTTTATATAGGTTTGTT+TGG - chr6_4:15351060-15351079 Msa0979020:intron 20.0%
!!! TTTTTTTCTATAGGTTTGTT+TGG - chr6_4:15351382-15351401 Msa0979020:intron 20.0%
!!! GGATTTTTATTTGTTTTGTT+TGG - chr6_4:15351767-15351786 Msa0979020:intron 20.0%
!!! GAATAATAAGTTTTTGGAAA+TGG - chr6_4:15351937-15351956 Msa0979020:intron 20.0%
!! TTAATATTGCAACAAAATGT+GGG - chr6_4:15352125-15352144 Msa0979020:intron 20.0%
!! TTGGTTAGTATTAACAAAAA+TGG - chr6_4:15352419-15352438 Msa0979020:intron 20.0%
!! TGGTTAGTATTAACAAAAAT+GGG - chr6_4:15352420-15352439 Msa0979020:intron 20.0%
!!! TGTTTTTTGTTTTTGTTTTC+TGG - chr6_4:15352502-15352521 Msa0979020:intron 20.0%
!! CTTATTATATTATGTCAAAC+AGG + chr6_4:15353004-15353023 None:intergenic 20.0%
!!! AAATGAAAAAGAAAAGCATA+TGG - chr6_4:15353222-15353241 Msa0979020:intron 20.0%
!! AATACAAAACTGAACTTAAT+CGG + chr6_4:15353265-15353284 None:intergenic 20.0%
!! TTCTTACAAAAAATGGTTTA+TGG + chr6_4:15353473-15353492 None:intergenic 20.0%
!! TAGCTTATTTCAACTAAAAA+AGG + chr6_4:15353933-15353952 None:intergenic 20.0%
!!! TTTATTTTTTGCATCTTATC+AGG - chr6_4:15354041-15354060 Msa0979020:intron 20.0%
!! AAAGTATAATCACATCAAAT+GGG + chr6_4:15354142-15354161 None:intergenic 20.0%
!!! AAAAGTATAATCACATCAAA+TGG + chr6_4:15354143-15354162 None:intergenic 20.0%
!! AAAATTAGGAGATAAAATTG+TGG + chr6_4:15354289-15354308 None:intergenic 20.0%
!!! CGATTTTCTCAAATATTTAT+CGG - chr6_4:15354778-15354797 Msa0979020:intron 20.0%
!! AATGAGATTCAAATTGAATA+TGG + chr6_4:15355031-15355050 None:intergenic 20.0%
!!! AATTAACTACCAATTTTGAT+TGG - chr6_4:15355122-15355141 Msa0979020:CDS 20.0%
!!! ATTAACTACCAATTTTGATT+GGG - chr6_4:15355123-15355142 Msa0979020:CDS 20.0%
!!! GGTTTTTTTATAGGTTTGTT+TGG - chr6_4:15349591-15349610 Msa0979020:intron 25.0%
!! TTTATAGGTTTGTTTGGTTA+AGG - chr6_4:15349597-15349616 Msa0979020:intron 25.0%
! AAGGAAGTAGAATACAATAA+TGG - chr6_4:15349616-15349635 Msa0979020:intron 25.0%
! AGGAAGTAGAATACAATAAT+GGG - chr6_4:15349617-15349636 Msa0979020:intron 25.0%
! TGATTGACTATAGGAAAAAT+TGG - chr6_4:15349822-15349841 Msa0979020:three_prime_UTR 25.0%
!!! ATTTAGGTCTTGTTTAGATA+AGG - chr6_4:15349918-15349937 Msa0979020:intron 25.0%
! TAGATAAGGAAGTAGAATAA+TGG - chr6_4:15349932-15349951 Msa0979020:intron 25.0%
! AGATAAGGAAGTAGAATAAT+GGG - chr6_4:15349933-15349952 Msa0979020:intron 25.0%
! GCATCTTCAATCAAAAATAT+TGG - chr6_4:15350079-15350098 Msa0979020:intron 25.0%
! TTCACAATTAAAAACCTCAA+TGG + chr6_4:15350118-15350137 None:intergenic 25.0%
!!! ATTAAAATTTGGGTCTTGTT+TGG - chr6_4:15350137-15350156 Msa0979020:exon 25.0%
!!! TATTGTTTTTGGTTGGAAAT+TGG - chr6_4:15350185-15350204 Msa0979020:intron 25.0%
!!! AAATTGCATTTTTGTTTGTG+TGG - chr6_4:15350221-15350240 Msa0979020:intron 25.0%
!! AACAAAGATGCAATTTTTCT+TGG + chr6_4:15350375-15350394 None:intergenic 25.0%
! TGGTTAAGGAATTAGAATAA+TGG - chr6_4:15350457-15350476 Msa0979020:intron 25.0%
! GGTTAAGGAATTAGAATAAT+GGG - chr6_4:15350458-15350477 Msa0979020:intron 25.0%
!!! TAATGGGTTTGTGTTATTTT+TGG - chr6_4:15350474-15350493 Msa0979020:intron 25.0%
! TGTTATTGTGAATCACAATT+TGG - chr6_4:15350566-15350585 Msa0979020:intron 25.0%
! GTTATTGTGAATCACAATTT+GGG - chr6_4:15350567-15350586 Msa0979020:intron 25.0%
!!! TGTTTTCATATTGGTTTGTT+TGG - chr6_4:15350594-15350613 Msa0979020:intron 25.0%
! ATGGAACTGAAATAGAATAA+TGG - chr6_4:15350619-15350638 Msa0979020:intron 25.0%
!!! TAATGGTTTTGTGTTCTTTT+TGG - chr6_4:15350636-15350655 Msa0979020:intron 25.0%
!!! TGTTCTTTTTGGTTGAAAAT+TGG - chr6_4:15349644-15349663 Msa0979020:intron 25.0%
!!! TCTGTTTTATTAGGTTTGTT+TGG - chr6_4:15350722-15350741 Msa0979020:intron 25.0%
!! TTATTAGGTTTGTTTGGTTA+AGG - chr6_4:15350728-15350747 Msa0979020:intron 25.0%
! TGGTTAAGGAATTAGAATAA+TGG - chr6_4:15350457-15350476 Msa0979020:intron 25.0%
! GGTTAAGGAATTAGAATAAT+GGG - chr6_4:15350458-15350477 Msa0979020:intron 25.0%
!!! GCATTGTTTTTTGTGAAAAT+TGG - chr6_4:15350769-15350788 Msa0979020:intron 25.0%
! GAATTTGTATTATCTTTGGT+TGG - chr6_4:15350919-15350938 Msa0979020:intron 25.0%
!! TATATAGGTTTGTTTGGTTT+AGG - chr6_4:15351066-15351085 Msa0979020:intron 25.0%
! TTAGTGTTATGTTTGTGTTT+AGG - chr6_4:15351237-15351256 Msa0979020:intron 25.0%
! TAGTGTTATGTTTGTGTTTA+GGG - chr6_4:15351238-15351257 Msa0979020:intron 25.0%
!!! TGTTATTGGGTATTGAAATT+TGG - chr6_4:15351350-15351369 Msa0979020:intron 25.0%
!!! GTTATTGGGTATTGAAATTT+GGG - chr6_4:15351351-15351370 Msa0979020:intron 25.0%
!!! GTGTTAGGTTTTTTTTCTAT+AGG - chr6_4:15351373-15351392 Msa0979020:intron 25.0%
!!! TGTTCTTTTTGGTTGAAAAT+TGG - chr6_4:15349644-15349663 Msa0979020:intron 25.0%
! ACACCTTAAATCAAAAATGT+CGG - chr6_4:15351586-15351605 Msa0979020:intron 25.0%
! TCTCTTTGTGAATCAAAATT+TGG - chr6_4:15351807-15351826 Msa0979020:CDS 25.0%
! CTCTTTGTGAATCAAAATTT+GGG - chr6_4:15351808-15351827 Msa0979020:CDS 25.0%
!!! CTTTTGTTATCATATAGGAT+TGG - chr6_4:15351832-15351851 Msa0979020:CDS 25.0%
!! TAATGAGTTTGCATTCTTTT+TGG - chr6_4:15351872-15351891 Msa0979020:intron 25.0%
!!! TTTTTGGAAATGGATTTTCA+GGG - chr6_4:15351947-15351966 Msa0979020:intron 25.0%
!! CACATTTTGTTGCAATATTA+AGG + chr6_4:15352126-15352145 None:intergenic 25.0%
! CTTAATATTGCAACAAAATG+TGG - chr6_4:15352124-15352143 Msa0979020:intron 25.0%
! AAACTCGAATATTTGTTTGT+GGG - chr6_4:15352336-15352355 Msa0979020:intron 25.0%
!! GAAGTTTCATTTCATGTTTT+AGG - chr6_4:15352450-15352469 Msa0979020:intron 25.0%
! AAACAAAAAACAGAAAAGTG+AGG + chr6_4:15352494-15352513 None:intergenic 25.0%
!!! ATTTTTGTTGTTCTTGTTGT+AGG - chr6_4:15352683-15352702 Msa0979020:intron 25.0%
! TTTATTAAAAGCTTCCATGA+AGG - chr6_4:15352856-15352875 Msa0979020:intron 25.0%
!! GATATATCAGCTTATAGTTT+TGG + chr6_4:15353160-15353179 None:intergenic 25.0%
! TCAAGTTAATCACAATACTT+AGG - chr6_4:15353812-15353831 Msa0979020:intron 25.0%
! GAAATGTTCAAACTATCAAA+AGG + chr6_4:15353850-15353869 None:intergenic 25.0%
! TTCAACTAAAAAAGGATCAA+TGG + chr6_4:15353925-15353944 None:intergenic 25.0%
!! TGATTTCATCCTTTTTGATA+AGG - chr6_4:15354235-15354254 Msa0979020:intron 25.0%
!! GATTTCATCCTTTTTGATAA+GGG - chr6_4:15354236-15354255 Msa0979020:intron 25.0%
!! TATGTTTTCCCTTATCAAAA+AGG + chr6_4:15354247-15354266 None:intergenic 25.0%
! ACTATGATGTACGAAAAATT+AGG + chr6_4:15354303-15354322 None:intergenic 25.0%
!! GTGATTTTATTAAAGATCCA+AGG + chr6_4:15354394-15354413 None:intergenic 25.0%
! GTATATATGAAGTTCATTGA+AGG + chr6_4:15354593-15354612 None:intergenic 25.0%
! AACTTCATATATACCCTATT+TGG - chr6_4:15354599-15354618 Msa0979020:intron 25.0%
! ACTTCATATATACCCTATTT+GGG - chr6_4:15354600-15354619 Msa0979020:intron 25.0%
! TTCATAGCTTATATTTCTTG+AGG - chr6_4:15354848-15354867 Msa0979020:CDS 25.0%
!!! TTGATTTGCTTTTTTGTTTC+AGG - chr6_4:15354884-15354903 Msa0979020:CDS 25.0%
!!! TTCTGTTTTTCTTACTAGAA+TGG - chr6_4:15354953-15354972 Msa0979020:CDS 25.0%
!!! TCTGTTTTTCTTACTAGAAT+GGG - chr6_4:15354954-15354973 Msa0979020:CDS 25.0%
! GGTATAAACTATGTCAATTT+AGG + chr6_4:15355081-15355100 None:intergenic 25.0%
! TTAGAGTTCACTTTACATTA+TGG + chr6_4:15355102-15355121 None:intergenic 25.0%
! AGGGTAAAATTGTACATAAA+AGG + chr6_4:15355150-15355169 None:intergenic 25.0%
ATCATGGAGAAAAGATTTCA+AGG + chr6_4:15349211-15349230 None:intergenic 30.0%
! ATAAGTTTTCAGTGGAATCA+TGG + chr6_4:15349227-15349246 None:intergenic 30.0%
CAACAATGATGAAGAAGTTA+AGG - chr6_4:15349423-15349442 Msa0979020:three_prime_UTR 30.0%
!!! TAATGGGTTTGTGTTCTTTT+TGG - chr6_4:15349633-15349652 Msa0979020:intron 30.0%
GTTGAAAATTGATAAGCTGT+GGG - chr6_4:15349655-15349674 Msa0979020:intron 30.0%
!! ATCAAAATTTGGGTCTTGTT+TGG - chr6_4:15349755-15349774 Msa0979020:intron 30.0%
TGGTTAAGGAAATGGAATAA+TGG - chr6_4:15349775-15349794 Msa0979020:three_prime_UTR 30.0%
GGTTAAGGAAATGGAATAAT+GGG - chr6_4:15349776-15349795 Msa0979020:three_prime_UTR 30.0%
!! TAATGGGTTTGTATTGTTTC+TGG - chr6_4:15349792-15349811 Msa0979020:three_prime_UTR 30.0%
GGTGATAATTGATTGACTAT+AGG - chr6_4:15349813-15349832 Msa0979020:three_prime_UTR 30.0%
!! GGATTTTTATTTGTGTGGTT+TGG - chr6_4:15349685-15349704 Msa0979020:intron 30.0%
!! TGACACTAACTTGTTGATAT+TGG - chr6_4:15350004-15350023 Msa0979020:intron 30.0%
!!! TAATGGGCTTGTATTGTTTT+TGG - chr6_4:15350174-15350193 Msa0979020:intron 30.0%
AAAACCGAACATCCAAATAT+TGG + chr6_4:15350281-15350300 None:intergenic 30.0%
!! GGTTTTTATGTAGGTTTGTT+TGG - chr6_4:15350295-15350314 Msa0979020:intron 30.0%
! TATGTAGGTTTGTTTGGTTT+AGG - chr6_4:15350301-15350320 Msa0979020:intron 30.0%
TGGTTTAGGAATTAGAATGA+TGG - chr6_4:15350315-15350334 Msa0979020:intron 30.0%
GGTTTAGGAATTAGAATGAT+GGG - chr6_4:15350316-15350335 Msa0979020:intron 30.0%
! AAATTGCATCTTTGTTTGTG+TGG - chr6_4:15350379-15350398 Msa0979020:intron 30.0%
!! TACTTCATTGAGGTTTGTTA+TGG - chr6_4:15350409-15350428 Msa0979020:intron 30.0%
!!! ATGGTGTTTGGTTTTTATGT+AGG - chr6_4:15350428-15350447 Msa0979020:intron 30.0%
!! GGTTTTTATGTAGGTTTGTT+TGG - chr6_4:15350295-15350314 Msa0979020:intron 30.0%
! TATGTAGGTTTGTTTGGTTA+AGG - chr6_4:15350443-15350462 Msa0979020:intron 30.0%
!! TTGGGTGTTTGTTTTCATAT+TGG - chr6_4:15350585-15350604 Msa0979020:intron 30.0%
!! TTTTGGTCGTCTGTTTTATT+AGG - chr6_4:15350713-15350732 Msa0979020:CDS 30.0%
!! TGGTTAGCTCTAACAAAAAT+TGG - chr6_4:15350789-15350808 Msa0979020:intron 30.0%
!!! AAAATTGGATTTTTTGTGCG+TGG - chr6_4:15350804-15350823 Msa0979020:intron 30.0%
! GAGCAATTCTTTTACTATTG+AGG - chr6_4:15350842-15350861 Msa0979020:intron 30.0%
ATCAAAATTTGGGTCATGTT+TGG - chr6_4:15350878-15350897 Msa0979020:intron 30.0%
TGGTTTAGGAATCAGAATAA+TGG - chr6_4:15351080-15351099 Msa0979020:intron 30.0%
GGTTTAGGAATCAGAATAAT+GGG - chr6_4:15351081-15351100 Msa0979020:intron 30.0%
!!! TACTCGTTTTGATTGAACAT+TGG - chr6_4:15351108-15351127 Msa0979020:intron 30.0%
AACAAAGCTCCAATTATTGT+TGG + chr6_4:15351284-15351303 None:intergenic 30.0%
!! ATTCCATTGAGGTTTGTTAT+TGG - chr6_4:15351336-15351355 Msa0979020:intron 30.0%
!! TTCCATTGAGGTTTGTTATT+GGG - chr6_4:15351337-15351356 Msa0979020:intron 30.0%
! TCTATAGGTTTGTTTGGTTT+AGG - chr6_4:15351388-15351407 Msa0979020:intron 30.0%
TGGTTTAGGAAATAGTCTAA+TGG - chr6_4:15351402-15351421 Msa0979020:intron 30.0%
GGTTTAGGAAATAGTCTAAT+GGG - chr6_4:15351403-15351422 Msa0979020:intron 30.0%
!!! TAATGGGTTTGTGTTCTTTT+TGG - chr6_4:15349633-15349652 Msa0979020:intron 30.0%
TAGGTGATAATTCGAGAAAA+TGG - chr6_4:15351515-15351534 Msa0979020:intron 30.0%
CACCTTAAATCAAAAATGTC+GGG - chr6_4:15351587-15351606 Msa0979020:intron 30.0%
!!! AACCCGACATTTTTGATTTA+AGG + chr6_4:15351592-15351611 None:intergenic 30.0%
TTAAATCAAAAATGTCGGGT+TGG - chr6_4:15351591-15351610 Msa0979020:intron 30.0%
TTCACAATAACAAACCTCAA+TGG + chr6_4:15350558-15350577 None:intergenic 30.0%
! TGAATCAGAATTTGAGACTT+TGG - chr6_4:15351657-15351676 Msa0979020:CDS 30.0%
!!! TGAGACTTTGGTTTTTATGT+AGG - chr6_4:15351669-15351688 Msa0979020:intron 30.0%
!! TGGTTAGCTCTATCAAAAAT+TGG - chr6_4:15351746-15351765 Msa0979020:intron 30.0%
!! TGGGTCTTTTGTTATCATAT+AGG - chr6_4:15351827-15351846 Msa0979020:CDS 30.0%
!! TCATATAGGATTGGTTGTTA+AGG - chr6_4:15351841-15351860 Msa0979020:intron 30.0%
!!! CATTCTTTTTGGTTGAAGAT+TGG - chr6_4:15351883-15351902 Msa0979020:intron 30.0%
!! GTTTTTGGAAATGGATTTTC+AGG - chr6_4:15351946-15351965 Msa0979020:intron 30.0%
!! TTTTGGAAATGGATTTTCAG+GGG - chr6_4:15351948-15351967 Msa0979020:intron 30.0%
!! TTGATCATGGTTCTAAATTG+CGG - chr6_4:15352082-15352101 Msa0979020:intron 30.0%
!!! CTTTTTTTGGGGTTGAAAAT+TGG - chr6_4:15352301-15352320 Msa0979020:intron 30.0%
! CACAAACAAATATTCGAGTT+TGG + chr6_4:15352337-15352356 None:intergenic 30.0%
CAAACTCGAATATTTGTTTG+TGG - chr6_4:15352335-15352354 Msa0979020:intron 30.0%
AGTTGCTTAACAAAATGCAA+TGG - chr6_4:15352624-15352643 Msa0979020:intron 30.0%
!! ATACTTTTGTTTGTCTTGTC+TGG - chr6_4:15352717-15352736 Msa0979020:intron 30.0%
! ACAAGAACATTTTATGAGAC+TGG - chr6_4:15352904-15352923 Msa0979020:intron 30.0%
ATGATTAGTATATGGTAAGC+AGG + chr6_4:15352958-15352977 None:intergenic 30.0%
ATAAGATTCGAGTCACAAAT+TGG + chr6_4:15353078-15353097 None:intergenic 30.0%
CAAGTTCAATGCATAGTAAT+AGG + chr6_4:15353335-15353354 None:intergenic 30.0%
TCAGCAGTTCTTACAAAAAA+TGG + chr6_4:15353480-15353499 None:intergenic 30.0%
!!! CTGTTTTTTTCTTCCTTTTG+TGG - chr6_4:15353547-15353566 Msa0979020:intron 30.0%
ACACAAGTATTTACCACAAA+AGG + chr6_4:15353563-15353582 None:intergenic 30.0%
! CTATCAAAAGGTGTAGATAA+GGG + chr6_4:15353838-15353857 None:intergenic 30.0%
! ACTATCAAAAGGTGTAGATA+AGG + chr6_4:15353839-15353858 None:intergenic 30.0%
!!! TTTTTTGCATCTTATCAGGT+TGG - chr6_4:15354045-15354064 Msa0979020:intron 30.0%
ATCAAATGGGTATAAGATTG+AGG + chr6_4:15354129-15354148 None:intergenic 30.0%
! GAACCTTATTCATGTTTTAC+AGG - chr6_4:15354182-15354201 Msa0979020:intron 30.0%
GTACCTGTAAAACATGAATA+AGG + chr6_4:15354188-15354207 None:intergenic 30.0%
TTTATTAAAGATCCAAGGTG+TGG + chr6_4:15354389-15354408 None:intergenic 30.0%
TTGTGGTATAAGTACATGTT+TGG + chr6_4:15354451-15354470 None:intergenic 30.0%
!! ATATACCCTATTTGGGATTT+TGG - chr6_4:15354607-15354626 Msa0979020:intron 30.0%
ACATACCAAAATCCCAAATA+GGG + chr6_4:15354615-15354634 None:intergenic 30.0%
AACATACCAAAATCCCAAAT+AGG + chr6_4:15354616-15354635 None:intergenic 30.0%
CTCAGTGTAATTATATGTGT+CGG + chr6_4:15354753-15354772 None:intergenic 30.0%
TCTCAAATATTTATCGGTGT+CGG - chr6_4:15354784-15354803 Msa0979020:intron 30.0%
GAAATATAAGCTATGAAGCA+TGG + chr6_4:15354845-15354864 None:intergenic 30.0%
GAAAAACAGAATACAACATG+TGG + chr6_4:15354944-15354963 None:intergenic 30.0%
!! CTGTTTTTCTTACTAGAATG+GGG - chr6_4:15354955-15354974 Msa0979020:CDS 30.0%
TAAAAGGTCCCAATCAAAAT+TGG + chr6_4:15355134-15355153 None:intergenic 30.0%
AAGAACAGCATTGTAATCAA+GGG + chr6_4:15355169-15355188 None:intergenic 30.0%
AAAGAACAGCATTGTAATCA+AGG + chr6_4:15355170-15355189 None:intergenic 30.0%
AAAGATTTCAAGGTCGTGTT+TGG + chr6_4:15349201-15349220 None:intergenic 35.0%
!!! TGGTGTTGATAAGTTTTCAG+TGG + chr6_4:15349235-15349254 None:intergenic 35.0%
ACGTTCATTCTCTCTTCAAA+GGG - chr6_4:15349375-15349394 Msa0979020:three_prime_UTR 35.0%
TTAAGGATTTGTCACCAGAA+GGG - chr6_4:15349440-15349459 Msa0979020:three_prime_UTR 35.0%
GGTTGAAAATTGATAAGCTG+TGG - chr6_4:15349654-15349673 Msa0979020:intron 35.0%
TGATAAGCTGTGGGAAAAAT+TGG - chr6_4:15349664-15349683 Msa0979020:intron 35.0%
!! ATTTGGGTCTTGTTTGGTTA+AGG - chr6_4:15349761-15349780 Msa0979020:three_prime_UTR 35.0%
!! GTCTTGTTTGGTTAAGGAAA+TGG - chr6_4:15349767-15349786 Msa0979020:three_prime_UTR 35.0%
!! ATTTGGGTCTTGTTTGGTTA+AGG - chr6_4:15349761-15349780 Msa0979020:three_prime_UTR 35.0%
!!! GTTTTTGGTTGGAAATTGGT+TGG - chr6_4:15350189-15350208 Msa0979020:intron 35.0%
!! GCATTTTTGTTTGTGTGGTT+TGG - chr6_4:15350226-15350245 Msa0979020:intron 35.0%
!! TGGTTTGGTTTACTTCATTG+AGG - chr6_4:15350241-15350260 Msa0979020:intron 35.0%
TGTCATTGTGAGCCAATATT+TGG - chr6_4:15350266-15350285 Msa0979020:intron 35.0%
TGAGCCAATATTTGGATGTT+CGG - chr6_4:15350274-15350293 Msa0979020:intron 35.0%
! TGGATGTTCGGTTTTTATGT+AGG - chr6_4:15350286-15350305 Msa0979020:intron 35.0%
!! TTGAGGTTTGTTATGGTGTT+TGG - chr6_4:15350416-15350435 Msa0979020:intron 35.0%
! CTCTAAGAAAAGTTGCATCT+TGG - chr6_4:15350512-15350531 Msa0979020:intron 35.0%
!! CATATTGGTTTGTTTGGTCA+TGG - chr6_4:15350600-15350619 Msa0979020:intron 35.0%
ATTTGGGTCATGTTTGGTTA+AGG - chr6_4:15350884-15350903 Msa0979020:intron 35.0%
CAACACTAACACATTGATAC+TGG - chr6_4:15351170-15351189 Msa0979020:intron 35.0%
! TTTGTGTTTAGGGTGTTACA+AGG - chr6_4:15351248-15351267 Msa0979020:intron 35.0%
! TTGTGTTTAGGGTGTTACAA+GGG - chr6_4:15351249-15351268 Msa0979020:intron 35.0%
ATCTAGCCTCCAACAATAAT+TGG - chr6_4:15351272-15351291 Msa0979020:intron 35.0%
AAAGCTCCAATTATTGTTGG+AGG + chr6_4:15351281-15351300 None:intergenic 35.0%
!! TAATTGGAGCTTTGTTTGTG+TGG - chr6_4:15351288-15351307 Msa0979020:intron 35.0%
TAGCAATTCTCATTCCATTG+AGG - chr6_4:15351325-15351344 Msa0979020:intron 35.0%
TACCCAATAACAAACCTCAA+TGG + chr6_4:15351342-15351361 None:intergenic 35.0%
! GGTATTGAAATTTGGGTGTT+AGG - chr6_4:15351358-15351377 Msa0979020:intron 35.0%
TCGAATGTATTCACGTGTAT+TGG - chr6_4:15351544-15351563 Msa0979020:intron 35.0%
AAGAAATTCTCATGCCATTG+AGG - chr6_4:15351624-15351643 Msa0979020:CDS 35.0%
! GGTTTTTATGTAGGTTTGTC+TGG - chr6_4:15351678-15351697 Msa0979020:intron 35.0%
! TGGTTAGCTGCAACAAATAT+TGG - chr6_4:15351903-15351922 Msa0979020:intron 35.0%
!! TTTGGAAATGGATTTTCAGG+GGG - chr6_4:15351949-15351968 Msa0979020:intron 35.0%
AACATTCATGTGAGATCAGA+CGG + chr6_4:15352061-15352080 None:intergenic 35.0%
CACATGAATGTTGTTGATCA+TGG - chr6_4:15352069-15352088 Msa0979020:intron 35.0%
!!! TTTTGGGGTTGAAAATTGGT+TGG - chr6_4:15352305-15352324 Msa0979020:intron 35.0%
TGGTTAGGAAAGTAGAGTAA+TGG - chr6_4:15352366-15352385 Msa0979020:intron 35.0%
! AGATAGGTTAGAGCTTTTAC+TGG + chr6_4:15352744-15352763 None:intergenic 35.0%
! AGTAAAAGCTCTAACCTATC+TGG - chr6_4:15352743-15352762 Msa0979020:intron 35.0%
CTAAACAGTTTGATCCTTCA+TGG + chr6_4:15352873-15352892 None:intergenic 35.0%
ATTAGTATATGGTAAGCAGG+TGG + chr6_4:15352955-15352974 None:intergenic 35.0%
GATGTTCAAAATGTGTGAGT+TGG - chr6_4:15353040-15353059 Msa0979020:intron 35.0%
! GAAAAGCATATGGCATTACA+AGG - chr6_4:15353232-15353251 Msa0979020:intron 35.0%
TATGCATTGAACTTGTGACT+TGG - chr6_4:15353340-15353359 Msa0979020:intron 35.0%
ATGCATTGAACTTGTGACTT+GGG - chr6_4:15353341-15353360 Msa0979020:intron 35.0%
AAATAAGCTAAGCGTGTGTT+TGG - chr6_4:15353943-15353962 Msa0979020:intron 35.0%
GGGTATAAGATTGAGGTAAA+AGG + chr6_4:15354122-15354141 None:intergenic 35.0%
TGAAATCAAGACAAAGCCAA+CGG + chr6_4:15354223-15354242 None:intergenic 35.0%
! AAGGGAAAACATACTAGCTT+TGG - chr6_4:15354254-15354273 Msa0979020:intron 35.0%
CGTACATCATAGTACATGTT+TGG - chr6_4:15354310-15354329 Msa0979020:intron 35.0%
AGGAAAACAAATACGTCAGT+AGG + chr6_4:15354475-15354494 None:intergenic 35.0%
! AAGAGAAGCGTGAATGTTTA+TGG + chr6_4:15354534-15354553 None:intergenic 35.0%
TGAAGGAATTGAATTGACAC+CGG + chr6_4:15354576-15354595 None:intergenic 35.0%
TAAGCTATGAAGCATGGATA+CGG + chr6_4:15354839-15354858 None:intergenic 35.0%
!! TTGTTTCAGGTTGTGTTGAA+TGG - chr6_4:15354897-15354916 Msa0979020:CDS 35.0%
CTTCACTAAAATTGCCAAGA+TGG - chr6_4:15354985-15355004 Msa0979020:CDS 35.0%
ATAGCTTTCTCTAACCATCT+TGG + chr6_4:15355002-15355021 None:intergenic 35.0%
GAAATGGAGGAGAAGATGAA+GGG + chr6_4:15349262-15349281 None:intergenic 40.0%
!! AAGTGGGTTTGGTTTGGAAA+TGG + chr6_4:15349278-15349297 None:intergenic 40.0%
TAAGAGTGGAGAGAGAAAGT+GGG + chr6_4:15349301-15349320 None:intergenic 40.0%
GAAGAGAGAGAAAGTAAGAG+TGG + chr6_4:15349315-15349334 None:intergenic 40.0%
AGTTTCAATGGTTGAGATGG+TGG + chr6_4:15349337-15349356 None:intergenic 40.0%
AGTTTGAGAGGGAGTTTCAA+TGG + chr6_4:15349349-15349368 None:intergenic 40.0%
! AACGTGGTTTGAGTTTGAGA+GGG + chr6_4:15349360-15349379 None:intergenic 40.0%
! CTTTGAAGAGAGAATGAACG+TGG + chr6_4:15349376-15349395 None:intergenic 40.0%
CACGTTCATTCTCTCTTCAA+AGG - chr6_4:15349374-15349393 Msa0979020:three_prime_UTR 40.0%
GTTAAGGATTTGTCACCAGA+AGG - chr6_4:15349439-15349458 Msa0979020:three_prime_UTR 40.0%
TAAGGATTTGTCACCAGAAG+GGG - chr6_4:15349441-15349460 Msa0979020:three_prime_UTR 40.0%
GTATCAGAAGACACTTCAGT+TGG - chr6_4:15349468-15349487 Msa0979020:intron 40.0%
!! GAGTAATGCTCTTGCTATTG+AGG - chr6_4:15349537-15349556 Msa0979020:intron 40.0%
!! GTGCAATTCTCTTGCTATTG+AGG - chr6_4:15349719-15349738 Msa0979020:intron 40.0%
!! GTGCAATTCTCTTGCTATTG+AGG - chr6_4:15349719-15349738 Msa0979020:intron 40.0%
!!! GGGCTTGTATTGTTTTTGGT+TGG - chr6_4:15350178-15350197 Msa0979020:intron 40.0%
!!! GTTGGAAATTGGTTGGCTTT+TGG - chr6_4:15350196-15350215 Msa0979020:intron 40.0%
! GCATCTTTGTTTGTGTGGTT+TGG - chr6_4:15350384-15350403 Msa0979020:intron 40.0%
!! TGGTTTGGTCTACTTCATTG+AGG - chr6_4:15350399-15350418 Msa0979020:intron 40.0%
!! AAGTTGCATCTTGGTTTGTG+TGG - chr6_4:15350521-15350540 Msa0979020:intron 40.0%
!! TGGTTTGGTCTACTTCATTG+AGG - chr6_4:15350399-15350418 Msa0979020:intron 40.0%
!!! TGGATTTTTTGTGCGTGGTT+TGG - chr6_4:15350809-15350828 Msa0979020:intron 40.0%
TGTTGTGTTCGTGAATGTGT+CGG + chr6_4:15351155-15351174 None:intergenic 40.0%
ACTGACACTAACACGTTGAT+AGG - chr6_4:15351496-15351515 Msa0979020:intron 40.0%
!!! TGCTGAGGGTCTTCTTTTTT+TGG - chr6_4:15352288-15352307 Msa0979020:intron 40.0%
!!! GCTGAGGGTCTTCTTTTTTT+GGG - chr6_4:15352289-15352308 Msa0979020:intron 40.0%
!!! CTGAGGGTCTTCTTTTTTTG+GGG - chr6_4:15352290-15352309 Msa0979020:intron 40.0%
CTCATCGACGATATCACTAT+TGG + chr6_4:15352561-15352580 None:intergenic 40.0%
TAGTGATATCGTCGATGAGA+TGG - chr6_4:15352562-15352581 Msa0979020:intron 40.0%
AGTGATATCGTCGATGAGAT+GGG - chr6_4:15352563-15352582 Msa0979020:intron 40.0%
TGATGCTGGAAGGAAAACTA+TGG - chr6_4:15352590-15352609 Msa0979020:intron 40.0%
TAAAAGCAAGCTCACCAGAT+AGG + chr6_4:15352760-15352779 None:intergenic 40.0%
!! CTTCATTGATTTCGTGAGCT+AGG - chr6_4:15352781-15352800 Msa0979020:intron 40.0%
GACAGTAATTGTCGATGAAG+AGG - chr6_4:15353384-15353403 Msa0979020:intron 40.0%
TCTTTCATGCAGCTTAAGCA+TGG - chr6_4:15353636-15353655 Msa0979020:intron 40.0%
CAGCTTAAGCATGGTATAGT+TGG - chr6_4:15353645-15353664 Msa0979020:intron 40.0%
TGGTATAGTTGGTTACACGA+TGG - chr6_4:15353656-15353675 Msa0979020:intron 40.0%
GGTATAGTTGGTTACACGAT+GGG - chr6_4:15353657-15353676 Msa0979020:intron 40.0%
! TAAGCGTGTGTTTGGAACTT+CGG - chr6_4:15353951-15353970 Msa0979020:intron 40.0%
!! TTATCAGGTTGGAAACCAGT+TGG - chr6_4:15354056-15354075 Msa0979020:intron 40.0%
! GTTTTACAGGTACGATCGAT+CGG - chr6_4:15354195-15354214 Msa0979020:intron 40.0%
GTTTGGATCGATTGTGAGTT+TGG + chr6_4:15354434-15354453 None:intergenic 40.0%
CAAATACGTCAGTAGGTTTG+TGG + chr6_4:15354468-15354487 None:intergenic 40.0%
! TCCTTTTCATGTTTTGCGCA+TGG - chr6_4:15354491-15354510 Msa0979020:intron 40.0%
TCCATGCGCAAAACATGAAA+AGG + chr6_4:15354495-15354514 None:intergenic 40.0%
TTCTCATATTAGCCGTGTCT+CGG - chr6_4:15354691-15354710 Msa0979020:intron 40.0%
!! TTTCAGGTTGTGTTGAATGG+TGG - chr6_4:15354900-15354919 Msa0979020:CDS 40.0%
AGGAGAAGATGAAGGGAGAA+TGG + chr6_4:15349255-15349274 None:intergenic 45.0%
GGAAATGGAGGAGAAGATGA+AGG + chr6_4:15349263-15349282 None:intergenic 45.0%
!! TGGGTTTGGTTTGGAAATGG+AGG + chr6_4:15349275-15349294 None:intergenic 45.0%
GTAAGAGTGGAGAGAGAAAG+TGG + chr6_4:15349302-15349321 None:intergenic 45.0%
GGGAGTTTCAATGGTTGAGA+TGG + chr6_4:15349340-15349359 None:intergenic 45.0%
! GAACGTGGTTTGAGTTTGAG+AGG + chr6_4:15349361-15349380 None:intergenic 45.0%
! TCCATGTTTGCTGCTCTTAC+TGG - chr6_4:15349499-15349518 Msa0979020:intron 45.0%
! CCATGTTTGCTGCTCTTACT+GGG - chr6_4:15349500-15349519 Msa0979020:intron 45.0%
GTGCAATTCACTTGCCATTG+AGG - chr6_4:15350101-15350120 Msa0979020:intron 45.0%
!! GCATCTTGGTTTGTGTGGTT+TGG - chr6_4:15350526-15350545 Msa0979020:intron 45.0%
!! GAGCATTGCTCTTGCTATTG+AGG - chr6_4:15351005-15351024 Msa0979020:intron 45.0%
!! GGAGCTTTGTTTGTGTGGTT+TGG - chr6_4:15351293-15351312 Msa0979020:intron 45.0%
TGTTGTGCATGTGTCTGTGT+TGG + chr6_4:15351477-15351496 None:intergenic 45.0%
TAAGGTTCGCAACGTAACAG+TGG + chr6_4:15352108-15352127 None:intergenic 45.0%
CATAATTGCAGCTGCTGCAT+CGG + chr6_4:15352160-15352179 None:intergenic 45.0%
! ACTGTACAGATTGCTTGCTG+AGG - chr6_4:15352273-15352292 Msa0979020:intron 45.0%
! CTGTACAGATTGCTTGCTGA+GGG - chr6_4:15352274-15352293 Msa0979020:intron 45.0%
CGAATATTTGTTTGTGGGCG+AGG - chr6_4:15352341-15352360 Msa0979020:intron 45.0%
ATTTGTTTGTGGGCGAGGTT+TGG - chr6_4:15352346-15352365 Msa0979020:intron 45.0%
GTGATATCGTCGATGAGATG+GGG - chr6_4:15352564-15352583 Msa0979020:intron 45.0%
!! ATGAGATGGGGTATTGATGC+TGG - chr6_4:15352576-15352595 Msa0979020:intron 45.0%
GATTTCGTGAGCTAGGCAAT+AGG - chr6_4:15352788-15352807 Msa0979020:intron 45.0%
GTTACACGATGGGTACTTTG+TGG - chr6_4:15353667-15353686 Msa0979020:intron 45.0%
! TGTTTGGAACTTCGGTTCTG+TGG - chr6_4:15353959-15353978 Msa0979020:intron 45.0%
TTGCGCACAAGAAAACTGAC+AGG + chr6_4:15354084-15354103 None:intergenic 45.0%
ACAATGTGACACCATGATCG+TGG - chr6_4:15354357-15354376 Msa0979020:intron 45.0%
GTGAGTTTGGCGAAATCACT+TGG + chr6_4:15354421-15354440 None:intergenic 45.0%
AATTGAATTGACACCGGCAG+CGG + chr6_4:15354570-15354589 None:intergenic 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG + chr6_4:15354742-15354761 None:intergenic 45.0%
ATGGATACGGATACAGACAC+CGG + chr6_4:15354826-15354845 None:intergenic 45.0%
! CAAGGTCGTGTTTGGTTCGT+TGG + chr6_4:15349193-15349212 None:intergenic 50.0%
! AGTGGGAAGTGGGTTTGGTT+TGG + chr6_4:15349284-15349303 None:intergenic 50.0%
! GAGAAAGTGGGAAGTGGGTT+TGG + chr6_4:15349289-15349308 None:intergenic 50.0%
GGAGAGAGAAAGTGGGAAGT+GGG + chr6_4:15349294-15349313 None:intergenic 50.0%
TGGAGAGAGAAAGTGGGAAG+TGG + chr6_4:15349295-15349314 None:intergenic 50.0%
TTCTGATACACCTCCCCTTC+TGG + chr6_4:15349457-15349476 None:intergenic 50.0%
CCCAGTAAGAGCAGCAAACA+TGG + chr6_4:15349503-15349522 None:intergenic 50.0%
! GTTTGCTGCTCTTACTGGGT+TGG - chr6_4:15349504-15349523 Msa0979020:intron 50.0%
AGGTGTGTTTGACACCAGCA+CGG + chr6_4:15351572-15351591 None:intergenic 50.0%
CGATGCAGCAGCTGCAATTA+TGG - chr6_4:15352158-15352177 Msa0979020:intron 50.0%
TGCAACCACAATTGCAGCTG+CGG - chr6_4:15352208-15352227 Msa0979020:intron 50.0%
! TTTGTGGGCGAGGTTTGGTT+AGG - chr6_4:15352351-15352370 Msa0979020:intron 50.0%
!! GATGGGGTATTGATGCTGGA+AGG - chr6_4:15352580-15352599 Msa0979020:intron 50.0%
ACACGATGGGTACTTTGTGG+AGG - chr6_4:15353670-15353689 Msa0979020:intron 50.0%
GAAAACTGACAGGCTCCAAC+TGG + chr6_4:15354074-15354093 None:intergenic 50.0%
! TGTGGCTTTTGCCACGATCA+TGG + chr6_4:15354371-15354390 None:intergenic 50.0%
! TATTAGCCGTGTCTCGGTGT+CGG - chr6_4:15354697-15354716 Msa0979020:intron 50.0%
GGATTTGTCACCAGAAGGGG+AGG - chr6_4:15349444-15349463 Msa0979020:three_prime_UTR 55.0%
TCGTGGCAAAAGCCACACCT+TGG - chr6_4:15354374-15354393 Msa0979020:intron 55.0%
! ACATTTGTGCTGACCGCTGC+CGG - chr6_4:15354554-15354573 Msa0979020:intron 55.0%
!! CACGTGTATTGGTGCCGTGC+TGG - chr6_4:15351555-15351574 Msa0979020:intron 60.0%
GCGATCCGCAGCTGCAATTG+TGG + chr6_4:15352216-15352235 None:intergenic 60.0%
!! GTACGATCGATCGGTGCCGT+TGG - chr6_4:15354204-15354223 Msa0979020:intron 60.0%
TCGTGTCCGACACCGAGACA+CGG + chr6_4:15354706-15354725 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG + chr6_4:15354736-15354755 None:intergenic 60.0%
!! GTCTCGGTGTCGGACACGAC+AGG - chr6_4:15354707-15354726 Msa0979020:intron 65.0%
CGGCGTGTCTGTGTCGTGTC+CGG - chr6_4:15354804-15354823 Msa0979020:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 15349173 15355215 15349173 ID=Msa0979020;Name=Msa0979020
chr6_4 mRNA 15349173 15355215 15349173 ID=Msa0979020-mRNA-1;Parent=Msa0979020;Name=Msa0979020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=53|0.83|1|1|0.66|1|7|450|183
chr6_4 exon 15349173 15349482 15349173 ID=Msa0979020-mRNA-1:exon:5006;Parent=Msa0979020-mRNA-1
chr6_4 exon 15349760 15349861 15349760 ID=Msa0979020-mRNA-1:exon:5005;Parent=Msa0979020-mRNA-1
chr6_4 exon 15350113 15350184 15350113 ID=Msa0979020-mRNA-1:exon:5004;Parent=Msa0979020-mRNA-1
chr6_4 exon 15350697 15350740 15350697 ID=Msa0979020-mRNA-1:exon:5003;Parent=Msa0979020-mRNA-1
chr6_4 exon 15351624 15351683 15351624 ID=Msa0979020-mRNA-1:exon:5002;Parent=Msa0979020-mRNA-1
chr6_4 exon 15351777 15351857 15351777 ID=Msa0979020-mRNA-1:exon:5001;Parent=Msa0979020-mRNA-1
chr6_4 exon 15354830 15355215 15354830 ID=Msa0979020-mRNA-1:exon:5000;Parent=Msa0979020-mRNA-1
chr6_4 five_prime_UTR 15355163 15355215 15355163 ID=Msa0979020-mRNA-1:five_prime_utr;Parent=Msa0979020-mRNA-1
chr6_4 CDS 15354830 15355162 15354830 ID=Msa0979020-mRNA-1:cds;Parent=Msa0979020-mRNA-1
chr6_4 CDS 15351777 15351857 15351777 ID=Msa0979020-mRNA-1:cds;Parent=Msa0979020-mRNA-1
chr6_4 CDS 15351624 15351683 15351624 ID=Msa0979020-mRNA-1:cds;Parent=Msa0979020-mRNA-1
chr6_4 CDS 15350697 15350740 15350697 ID=Msa0979020-mRNA-1:cds;Parent=Msa0979020-mRNA-1
chr6_4 CDS 15350151 15350184 15350151 ID=Msa0979020-mRNA-1:cds;Parent=Msa0979020-mRNA-1
chr6_4 three_prime_UTR 15350113 15350150 15350113 ID=Msa0979020-mRNA-1:three_prime_utr;Parent=Msa0979020-mRNA-1
chr6_4 three_prime_UTR 15349760 15349861 15349760 ID=Msa0979020-mRNA-1:three_prime_utr;Parent=Msa0979020-mRNA-1
chr6_4 three_prime_UTR 15349173 15349482 15349173 ID=Msa0979020-mRNA-1:three_prime_utr;Parent=Msa0979020-mRNA-1
Gene Sequence

>Msa0979020

ATGATTCCACTGAAAACTTATCAACACCATTCTCCCTTCATCTTCTCCTCCATTTCCAAACCAAACCCACTTCCCACTTTCTCTCTCCACTCTTACTTTCTCTCTCTTCCACCATCTCAACCATTGAAACTCCCTCTCAAACTCAAACCACGTTCATTCTCTCTTCAAAGGGTTTCAAACATTGAAGTTGCAATTTTCAACAATGATGAAGAAGTTAAGGATTTGTCACCAGAAGGGGAGGTGTATCAGAAGACACTTCAGTTGGTTGAATGTTCCATGTTTGCTGCTCTTACTGGGTTGGTCTACTTCTTGAGTAATGCTCTTGCTATTGAGAATTACTTTAGTTGTTTCTTCTCGTTGCCAATAGTGATATCGTCGATGAGATGGGGTATTGATGCTGGAAGGAAAACTATGGTTGCAACAACTATACTTTTGTTTGTCTTGTCTGGTCCAGTAAAAGCTCTAACCTATCTGCTTAAGCATGGTATAGTTGGTTACACGATGGGTACTTTGTGGAGGTACGATCGATCGGTGCCGTTGGCTTTGTCTTGA

Protein sequence

>Msa0979020

MIPLKTYQHHSPFIFSSISKPNPLPTFSLHSYFLSLPPSQPLKLPLKLKPRSFSLQRVSNIEVAIFNNDEEVKDLSPEGEVYQKTLQLVECSMFAALTGLVYFLSNALAIENYFSCFFSLPIVISSMRWGIDAGRKTMVATTILLFVLSGPVKALTYLLKHGIVGYTMGTLWRYDRSVPLALS*