Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418330 | Q2HTD5 | 58.678 | 121 | 34 | 4 | 1 | 106 | 1 | 120 | 3.27e-26 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa1418330 | 0.820394 | 7.022050e-53 | -8.615850e-47 |
| Msa0018110 | Msa1418330 | 0.803880 | 2.822682e-49 | -8.615850e-47 |
| Msa0024320 | Msa1418330 | 0.825615 | 4.257044e-54 | -8.615850e-47 |
| Msa0027120 | Msa1418330 | 0.806141 | 9.502980e-50 | -8.615850e-47 |
| Msa0037300 | Msa1418330 | 0.814703 | 1.346192e-51 | -8.615850e-47 |
| Msa0042210 | Msa1418330 | 0.823644 | 1.239378e-53 | -8.615850e-47 |
| Msa0046800 | Msa1418330 | 0.810328 | 1.217596e-50 | -8.615850e-47 |
| Msa0052180 | Msa1418330 | 0.808187 | 3.503122e-50 | -8.615850e-47 |
| Msa0053210 | Msa1418330 | 0.801866 | 7.354726e-49 | -8.615850e-47 |
| Msa0070580 | Msa1418330 | 0.804185 | 2.438932e-49 | -8.615850e-47 |
| Msa0075080 | Msa1418330 | 0.828548 | 8.456045e-55 | -8.615850e-47 |
| Msa0076590 | Msa1418330 | 0.818271 | 2.138346e-52 | -8.615850e-47 |
| Msa0076990 | Msa1418330 | 0.803265 | 3.786600e-49 | -8.615850e-47 |
| Msa0077990 | Msa1418330 | 0.807820 | 4.193522e-50 | -8.615850e-47 |
| Msa0097220 | Msa1418330 | 0.812533 | 4.041866e-51 | -8.615850e-47 |
| Msa0102290 | Msa1418330 | 0.809023 | 2.322492e-50 | -8.615850e-47 |
| Msa0108490 | Msa1418330 | 0.824821 | 6.558125e-54 | -8.615850e-47 |
| Msa0120100 | Msa1418330 | 0.800941 | 1.138098e-48 | -8.615850e-47 |
| Msa1349720 | Msa1418330 | 0.823875 | 1.094438e-53 | -8.615850e-47 |
| Msa1356500 | Msa1418330 | 0.809820 | 1.566096e-50 | -8.615850e-47 |
| Msa1363170 | Msa1418330 | 0.813284 | 2.767122e-51 | -8.615850e-47 |
| Msa1369390 | Msa1418330 | 0.812441 | 4.233898e-51 | -8.615850e-47 |
| Msa1369400 | Msa1418330 | 0.817541 | 3.125381e-52 | -8.615850e-47 |
| Msa1373930 | Msa1418330 | 0.814556 | 1.450879e-51 | -8.615850e-47 |
| Msa1375120 | Msa1418330 | 0.827698 | 1.354921e-54 | -8.615850e-47 |
| Msa1375570 | Msa1418330 | 0.814177 | 1.759291e-51 | -8.615850e-47 |
| Msa1375650 | Msa1418330 | 0.838512 | 2.752477e-57 | -8.615850e-47 |
| Msa1376510 | Msa1418330 | 0.825687 | 4.091962e-54 | -8.615850e-47 |
| Msa1383940 | Msa1418330 | 0.804176 | 2.449666e-49 | -8.615850e-47 |
| Msa1403590 | Msa1418330 | 0.816598 | 5.091464e-52 | -8.615850e-47 |
| Msa1411390 | Msa1418330 | 0.807972 | 3.892546e-50 | -8.615850e-47 |
| Msa1412810 | Msa1418330 | 0.800992 | 1.110718e-48 | -8.615850e-47 |
| Msa1418330 | Msa1429180 | 0.812459 | 4.194650e-51 | -8.615850e-47 |
| Msa1418330 | Msa1439000 | 0.826516 | 2.599490e-54 | -8.615850e-47 |
| Msa1418330 | Msa1439880 | 0.810715 | 1.004227e-50 | -8.615850e-47 |
| Msa1418330 | Msa1443280 | 0.809105 | 2.230036e-50 | -8.615850e-47 |
| Msa1418330 | Msa1460340 | 0.836024 | 1.192093e-56 | -8.615850e-47 |
| Msa1418330 | Msa1462700 | 0.821101 | 4.829192e-53 | -8.615850e-47 |
| Msa0606230 | Msa1418330 | 0.818137 | 2.292925e-52 | -8.615850e-47 |
| Msa0608720 | Msa1418330 | 0.815596 | 8.523772e-52 | -8.615850e-47 |
| Msa0612950 | Msa1418330 | 0.804435 | 2.163259e-49 | -8.615850e-47 |
| Msa0615460 | Msa1418330 | 0.804162 | 2.465797e-49 | -8.615850e-47 |
| Msa0616570 | Msa1418330 | 0.828564 | 8.381162e-55 | -8.615850e-47 |
| Msa0619450 | Msa1418330 | 0.819904 | 9.089374e-53 | -8.615850e-47 |
| Msa0619530 | Msa1418330 | 0.827234 | 1.750532e-54 | -8.615850e-47 |
| Msa0619960 | Msa1418330 | 0.814064 | 1.863377e-51 | -8.615850e-47 |
| Msa0620050 | Msa1418330 | 0.818604 | 1.797390e-52 | -8.615850e-47 |
| Msa0624260 | Msa1418330 | 0.801227 | 9.943513e-49 | -8.615850e-47 |
| Msa0646310 | Msa1418330 | 0.804058 | 2.592236e-49 | -8.615850e-47 |
| Msa0649140 | Msa1418330 | 0.801181 | 1.016265e-48 | -8.615850e-47 |
| Msa0653690 | Msa1418330 | 0.809626 | 1.724591e-50 | -8.615850e-47 |
| Msa0654560 | Msa1418330 | 0.803136 | 4.026205e-49 | -8.615850e-47 |
| Msa0655980 | Msa1418330 | 0.831222 | 1.886137e-55 | -8.615850e-47 |
| Msa0656910 | Msa1418330 | 0.800137 | 1.659609e-48 | -8.615850e-47 |
| Msa0659580 | Msa1418330 | 0.823059 | 1.698469e-53 | -8.615850e-47 |
| Msa0673620 | Msa1418330 | 0.805609 | 1.229268e-49 | -8.615850e-47 |
| Msa0677250 | Msa1418330 | 0.802143 | 6.453237e-49 | -8.615850e-47 |
| Msa0681100 | Msa1418330 | 0.833422 | 5.383402e-56 | -8.615850e-47 |
| Msa0694810 | Msa1418330 | 0.812587 | 3.933921e-51 | -8.615850e-47 |
| Msa0698510 | Msa1418330 | 0.816993 | 4.151540e-52 | -8.615850e-47 |
| Msa0698680 | Msa1418330 | 0.813954 | 1.970765e-51 | -8.615850e-47 |
| Msa0699200 | Msa1418330 | 0.843494 | 1.354097e-58 | -8.615850e-47 |
| Msa0699900 | Msa1418330 | 0.827542 | 1.477297e-54 | -8.615850e-47 |
| Msa0706860 | Msa1418330 | 0.800942 | 1.137420e-48 | -8.615850e-47 |
| Msa0711860 | Msa1418330 | 0.812512 | 4.084216e-51 | -8.615850e-47 |
| Msa0713570 | Msa1418330 | 0.802626 | 5.131490e-49 | -8.615850e-47 |
| Msa0719330 | Msa1418330 | 0.803024 | 4.245682e-49 | -8.615850e-47 |
| Msa0748470 | Msa1418330 | 0.823210 | 1.565498e-53 | -8.615850e-47 |
| Msa0750200 | Msa1418330 | 0.820399 | 7.001799e-53 | -8.615850e-47 |
| Msa0753590 | Msa1418330 | 0.815595 | 8.531151e-52 | -8.615850e-47 |
| Msa0755480 | Msa1418330 | 0.800433 | 1.444434e-48 | -8.615850e-47 |
| Msa0755550 | Msa1418330 | 0.807044 | 6.126140e-50 | -8.615850e-47 |
| Msa0766910 | Msa1418330 | 0.805787 | 1.127913e-49 | -8.615850e-47 |
| Msa0772530 | Msa1418330 | 0.806016 | 1.009218e-49 | -8.615850e-47 |
| Msa0790380 | Msa1418330 | 0.808186 | 3.504465e-50 | -8.615850e-47 |
| Msa0792490 | Msa1418330 | 0.813960 | 1.964460e-51 | -8.615850e-47 |
| Msa0799150 | Msa1418330 | 0.846818 | 1.710366e-59 | -8.615850e-47 |
| Msa0807840 | Msa1418330 | 0.809922 | 1.489165e-50 | -8.615850e-47 |
| Msa0825960 | Msa1418330 | 0.802361 | 5.817449e-49 | -8.615850e-47 |
| Msa0828730 | Msa1418330 | 0.801026 | 1.093513e-48 | -8.615850e-47 |
| Msa0835050 | Msa1418330 | 0.802304 | 5.978318e-49 | -8.615850e-47 |
| Msa0837040 | Msa1418330 | 0.802741 | 4.858773e-49 | -8.615850e-47 |
| Msa0122930 | Msa1418330 | 0.821336 | 4.261721e-53 | -8.615850e-47 |
| Msa0123680 | Msa1418330 | 0.809056 | 2.284706e-50 | -8.615850e-47 |
| Msa0156260 | Msa1418330 | 0.802669 | 5.027920e-49 | -8.615850e-47 |
| Msa0163400 | Msa1418330 | 0.821958 | 3.061697e-53 | -8.615850e-47 |
| Msa0167570 | Msa1418330 | 0.819342 | 1.221403e-52 | -8.615850e-47 |
| Msa0168470 | Msa1418330 | 0.826121 | 3.227564e-54 | -8.615850e-47 |
| Msa0170550 | Msa1418330 | 0.818189 | 2.232137e-52 | -8.615850e-47 |
| Msa0178020 | Msa1418330 | 0.809188 | 2.141166e-50 | -8.615850e-47 |
| Msa0181740 | Msa1418330 | 0.801324 | 9.499408e-49 | -8.615850e-47 |
| Msa0182610 | Msa1418330 | 0.810160 | 1.323004e-50 | -8.615850e-47 |
| Msa0185540 | Msa1418330 | 0.843866 | 1.076876e-58 | -8.615850e-47 |
| Msa0188670 | Msa1418330 | 0.809197 | 2.130925e-50 | -8.615850e-47 |
| Msa0224180 | Msa1418330 | 0.806921 | 6.503830e-50 | -8.615850e-47 |
| Msa0231180 | Msa1418330 | 0.805729 | 1.160037e-49 | -8.615850e-47 |
| Msa1225280 | Msa1418330 | 0.800114 | 1.677673e-48 | -8.615850e-47 |
| Msa1244940 | Msa1418330 | 0.811488 | 6.827210e-51 | -8.615850e-47 |
| Msa1257860 | Msa1418330 | 0.803272 | 3.772953e-49 | -8.615850e-47 |
| Msa1266750 | Msa1418330 | 0.804029 | 2.627734e-49 | -8.615850e-47 |
| Msa1269730 | Msa1418330 | 0.804238 | 2.377827e-49 | -8.615850e-47 |
| Msa1270850 | Msa1418330 | 0.809588 | 1.756846e-50 | -8.615850e-47 |
| Msa1270860 | Msa1418330 | 0.802444 | 5.593953e-49 | -8.615850e-47 |
| Msa1297490 | Msa1418330 | 0.802205 | 6.263909e-49 | -8.615850e-47 |
| Msa1303690 | Msa1418330 | 0.810757 | 9.836091e-51 | -8.615850e-47 |
| Msa1325260 | Msa1418330 | 0.821095 | 4.843808e-53 | -8.615850e-47 |
| Msa1330080 | Msa1418330 | 0.844034 | 9.703742e-59 | -8.615850e-47 |
| Msa1334690 | Msa1418330 | 0.802883 | 4.540323e-49 | -8.615850e-47 |
| Msa1335200 | Msa1418330 | 0.817973 | 2.497645e-52 | -8.615850e-47 |
| Msa1335210 | Msa1418330 | 0.803021 | 4.253013e-49 | -8.615850e-47 |
| Msa1337950 | Msa1418330 | 0.812843 | 3.457362e-51 | -8.615850e-47 |
| Msa0371010 | Msa1418330 | 0.801529 | 8.625885e-49 | -8.615850e-47 |
| Msa0380470 | Msa1418330 | 0.808638 | 2.806537e-50 | -8.615850e-47 |
| Msa0386230 | Msa1418330 | 0.810586 | 1.070912e-50 | -8.615850e-47 |
| Msa0386310 | Msa1418330 | 0.807391 | 5.171175e-50 | -8.615850e-47 |
| Msa0390760 | Msa1418330 | 0.806805 | 6.882073e-50 | -8.615850e-47 |
| Msa0417000 | Msa1418330 | 0.808521 | 2.973622e-50 | -8.615850e-47 |
| Msa0424940 | Msa1418330 | 0.826868 | 2.141622e-54 | -8.615850e-47 |
| Msa0428280 | Msa1418330 | 0.822784 | 1.967858e-53 | -8.615850e-47 |
| Msa0429990 | Msa1418330 | 0.814887 | 1.225682e-51 | -8.615850e-47 |
| Msa0430040 | Msa1418330 | 0.804555 | 2.042523e-49 | -8.615850e-47 |
| Msa0431550 | Msa1418330 | 0.809983 | 1.445122e-50 | -8.615850e-47 |
| Msa0436660 | Msa1418330 | 0.808090 | 3.673248e-50 | -8.615850e-47 |
| Msa0439090 | Msa1418330 | 0.807454 | 5.015181e-50 | -8.615850e-47 |
| Msa0440720 | Msa1418330 | 0.833897 | 4.095235e-56 | -8.615850e-47 |
| Msa0446110 | Msa1418330 | 0.810288 | 1.241871e-50 | -8.615850e-47 |
| Msa0473740 | Msa1418330 | 0.801774 | 7.683714e-49 | -8.615850e-47 |
| Msa0474640 | Msa1418330 | 0.824805 | 6.614732e-54 | -8.615850e-47 |
| Msa0474660 | Msa1418330 | 0.800297 | 1.539777e-48 | -8.615850e-47 |
| Msa0476140 | Msa1418330 | 0.846070 | 2.735621e-59 | -8.615850e-47 |
| Msa0476560 | Msa1418330 | 0.800845 | 1.190618e-48 | -8.615850e-47 |
| Msa0984230 | Msa1418330 | 0.801083 | 1.064207e-48 | -8.615850e-47 |
| Msa0985570 | Msa1418330 | 0.811851 | 5.692351e-51 | -8.615850e-47 |
| Msa0995130 | Msa1418330 | 0.819395 | 1.187979e-52 | -8.615850e-47 |
| Msa1031190 | Msa1418330 | 0.813275 | 2.780153e-51 | -8.615850e-47 |
| Msa1036370 | Msa1418330 | 0.834806 | 2.422730e-56 | -8.615850e-47 |
| Msa1037500 | Msa1418330 | 0.806145 | 9.484562e-50 | -8.615850e-47 |
| Msa1044520 | Msa1418330 | 0.800755 | 1.241845e-48 | -8.615850e-47 |
| Msa1045750 | Msa1418330 | 0.815574 | 8.621311e-52 | -8.615850e-47 |
| Msa1047390 | Msa1418330 | 0.814406 | 1.565859e-51 | -8.615850e-47 |
| Msa1070370 | Msa1418330 | 0.811873 | 5.629367e-51 | -8.615850e-47 |
| Msa1082640 | Msa1418330 | 0.802058 | 6.717747e-49 | -8.615850e-47 |
| Msa1095880 | Msa1418330 | 0.817971 | 2.500551e-52 | -8.615850e-47 |
| Msa0245690 | Msa1418330 | 0.814353 | 1.608932e-51 | -8.615850e-47 |
| Msa0259570 | Msa1418330 | 0.815705 | 8.063862e-52 | -8.615850e-47 |
| Msa0266100 | Msa1418330 | 0.801780 | 7.659919e-49 | -8.615850e-47 |
| Msa0269610 | Msa1418330 | 0.804003 | 2.660979e-49 | -8.615850e-47 |
| Msa0270230 | Msa1418330 | 0.805493 | 1.300199e-49 | -8.615850e-47 |
| Msa0284980 | Msa1418330 | 0.814362 | 1.601666e-51 | -8.615850e-47 |
| Msa0285510 | Msa1418330 | 0.816079 | 6.653148e-52 | -8.615850e-47 |
| Msa0292060 | Msa1418330 | 0.804940 | 1.697359e-49 | -8.615850e-47 |
| Msa0293060 | Msa1418330 | 0.820362 | 7.138472e-53 | -8.615850e-47 |
| Msa0305630 | Msa1418330 | 0.806756 | 7.047608e-50 | -8.615850e-47 |
| Msa0307820 | Msa1418330 | 0.813392 | 2.619877e-51 | -8.615850e-47 |
| Msa0317820 | Msa1418330 | 0.808656 | 2.782546e-50 | -8.615850e-47 |
| Msa0322480 | Msa1418330 | 0.840239 | 9.804315e-58 | -8.615850e-47 |
| Msa1119420 | Msa1418330 | 0.806265 | 8.946077e-50 | -8.615850e-47 |
| Msa1128850 | Msa1418330 | 0.823432 | 1.389457e-53 | -8.615850e-47 |
| Msa1131300 | Msa1418330 | 0.805942 | 1.046270e-49 | -8.615850e-47 |
| Msa1134800 | Msa1418330 | 0.806727 | 7.147193e-50 | -8.615850e-47 |
| Msa1148100 | Msa1418330 | 0.807847 | 4.138444e-50 | -8.615850e-47 |
| Msa1158180 | Msa1418330 | 0.810408 | 1.170022e-50 | -8.615850e-47 |
| Msa1169250 | Msa1418330 | 0.809410 | 1.918714e-50 | -8.615850e-47 |
| Msa1190300 | Msa1418330 | 0.822960 | 1.790662e-53 | -8.615850e-47 |
| Msa1190320 | Msa1418330 | 0.825991 | 3.466037e-54 | -8.615850e-47 |
| Msa1190670 | Msa1418330 | 0.816247 | 6.102280e-52 | -8.615850e-47 |
| Msa1191540 | Msa1418330 | 0.810510 | 1.112039e-50 | -8.615850e-47 |
| Msa1203320 | Msa1418330 | 0.803727 | 3.037195e-49 | -8.615850e-47 |
| Msa1222900 | Msa1418330 | 0.813342 | 2.687109e-51 | -8.615850e-47 |
| Msa0490740 | Msa1418330 | 0.806726 | 7.152231e-50 | -8.615850e-47 |
| Msa0492330 | Msa1418330 | 0.809735 | 1.633568e-50 | -8.615850e-47 |
| Msa0500580 | Msa1418330 | 0.813275 | 2.779166e-51 | -8.615850e-47 |
| Msa0506700 | Msa1418330 | 0.817160 | 3.808605e-52 | -8.615850e-47 |
| Msa0512930 | Msa1418330 | 0.816840 | 4.494973e-52 | -8.615850e-47 |
| Msa0514630 | Msa1418330 | 0.845981 | 2.893188e-59 | -8.615850e-47 |
| Msa0517820 | Msa1418330 | 0.806838 | 6.771786e-50 | -8.615850e-47 |
| Msa0519090 | Msa1418330 | 0.823111 | 1.651585e-53 | -8.615850e-47 |
| Msa0549700 | Msa1418330 | 0.802719 | 4.908337e-49 | -8.615850e-47 |
| Msa0552670 | Msa1418330 | 0.817617 | 3.004408e-52 | -8.615850e-47 |
| Msa0562040 | Msa1418330 | 0.816034 | 6.809460e-52 | -8.615850e-47 |
| Msa0598470 | Msa1418330 | 0.800101 | 1.687460e-48 | -8.615850e-47 |
| Msa0868500 | Msa1418330 | 0.809307 | 2.018478e-50 | -8.615850e-47 |
| Msa0868510 | Msa1418330 | 0.802295 | 6.003414e-49 | -8.615850e-47 |
| Msa0868520 | Msa1418330 | 0.801981 | 6.967095e-49 | -8.615850e-47 |
| Msa0880200 | Msa1418330 | 0.818157 | 2.268891e-52 | -8.615850e-47 |
| Msa0930150 | Msa1418330 | 0.817010 | 4.116352e-52 | -8.615850e-47 |
| Msa0932040 | Msa1418330 | 0.810627 | 1.049088e-50 | -8.615850e-47 |
| Msa0941410 | Msa1418330 | 0.816196 | 6.265495e-52 | -8.615850e-47 |
| Msa0941420 | Msa1418330 | 0.809228 | 2.099302e-50 | -8.615850e-47 |
| Msa0959970 | Msa1418330 | 0.800218 | 1.597613e-48 | -8.615850e-47 |
| Msa0968060 | Msa1418330 | 0.800786 | 1.224144e-48 | -8.615850e-47 |
| Msa0970160 | Msa1418330 | 0.815330 | 9.769746e-52 | -8.615850e-47 |
| Msa0974410 | Msa1418330 | 0.801824 | 7.502475e-49 | -8.615850e-47 |
| Msa0978540 | Msa1418330 | 0.820477 | 6.718216e-53 | -8.615850e-47 |
| Msa0978560 | Msa1418330 | 0.800500 | 1.399802e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418330 | MtrunA17_Chr7g0276211 | 58.678 | 121 | 34 | 4 | 1 | 106 | 1 | 120 | 6.30e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCCAATTCATCCAATT+TGG | 0.162116 | tig0024576:-44620 | None:intergenic |
| CGATCATTGGGGTCCCAAAT+TGG | 0.282259 | tig0024576:+44606 | Msa1418330:CDS |
| TTCTCCAATTCATCCAATTT+GGG | 0.339109 | tig0024576:-44619 | None:intergenic |
| CACTCTGTATAAACGATCAT+TGG | 0.347459 | tig0024576:+44593 | Msa1418330:CDS |
| GGGTCCCAAATTGGATGAAT+TGG | 0.357124 | tig0024576:+44615 | Msa1418330:CDS |
| AGTGGGTATTCAGGCCAATA+TGG | 0.382608 | tig0024576:+44429 | Msa1418330:CDS |
| GCATCATCGAGTGGGTATTC+AGG | 0.385134 | tig0024576:+44420 | Msa1418330:CDS |
| AGGAGTCTCTTCCATGCGAC+TGG | 0.421499 | tig0024576:-44548 | None:intergenic |
| ACTAATCGATGATTCCATAT+TGG | 0.431208 | tig0024576:-44443 | None:intergenic |
| ACTCTGTATAAACGATCATT+GGG | 0.435834 | tig0024576:+44594 | Msa1418330:CDS |
| TGTTCCAACGTTGTCATCTC+AGG | 0.449613 | tig0024576:+44352 | Msa1418330:CDS |
| CTCCTCTGCGCCCAGTCGCA+TGG | 0.454617 | tig0024576:+44537 | Msa1418330:CDS |
| CCGCCGTGATTGTAGAGAAC+TGG | 0.470912 | tig0024576:-44395 | None:intergenic |
| CTCAGGAGCACACGTTGTCT+TGG | 0.473627 | tig0024576:+44369 | Msa1418330:CDS |
| CATGCGACTGGGCGCAGAGG+AGG | 0.514470 | tig0024576:-44536 | None:intergenic |
| AGGAGCACACGTTGTCTTGG+CGG | 0.535212 | tig0024576:+44372 | Msa1418330:CDS |
| TAGTGGGTCAGATGTATTGT+GGG | 0.536796 | tig0024576:+44462 | Msa1418330:CDS |
| ATCAAAGAGTATGTTCTGAA+AGG | 0.563818 | tig0024576:-44660 | None:intergenic |
| TTCCATGCGACTGGGCGCAG+AGG | 0.567243 | tig0024576:-44539 | None:intergenic |
| GAGTATGTTCTGAAAGGTGT+AGG | 0.567401 | tig0024576:-44654 | None:intergenic |
| CGAACAATAACATCGGTATG+AGG | 0.567548 | tig0024576:-44568 | None:intergenic |
| GTTCTCTACAATCACGGCGG+CGG | 0.568781 | tig0024576:+44398 | Msa1418330:CDS |
| AATATGGAATCATCGATTAG+TGG | 0.570871 | tig0024576:+44445 | Msa1418330:CDS |
| GGAGTCTCTTCCATGCGACT+GGG | 0.571081 | tig0024576:-44547 | None:intergenic |
| ACGGCGGCGGCATCATCGAG+TGG | 0.593713 | tig0024576:+44411 | Msa1418330:CDS |
| ATATGGAATCATCGATTAGT+GGG | 0.595651 | tig0024576:+44446 | Msa1418330:CDS |
| CGGCCAGTTCTCTACAATCA+CGG | 0.600978 | tig0024576:+44392 | Msa1418330:CDS |
| AAAAGGAAAAGATGTGGTGT+TGG | 0.611610 | tig0024576:+44329 | None:intergenic |
| AATGATCGTTTATACAGAGT+GGG | 0.619057 | tig0024576:-44591 | None:intergenic |
| CAATGATCGTTTATACAGAG+TGG | 0.623120 | tig0024576:-44592 | None:intergenic |
| CGGCGGCGGCATCATCGAGT+GGG | 0.630862 | tig0024576:+44412 | Msa1418330:CDS |
| TTAGTGGGTCAGATGTATTG+TGG | 0.640580 | tig0024576:+44461 | Msa1418330:CDS |
| TCGCAAGATCAAGATCAAGA+AGG | 0.653778 | tig0024576:+44507 | Msa1418330:CDS |
| TGCTCCTGAGATGACAACGT+TGG | 0.713430 | tig0024576:-44356 | None:intergenic |
| CTCTGTATAAACGATCATTG+GGG | 0.729290 | tig0024576:+44595 | Msa1418330:CDS |
| GAGTGGGCGAACAATAACAT+CGG | 0.729674 | tig0024576:-44575 | None:intergenic |
| CCAGTTCTCTACAATCACGG+CGG | 0.772030 | tig0024576:+44395 | Msa1418330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACTAATCGATGATTCCATAT+TGG | - | tig0024576:44446-44465 | None:intergenic | 30.0% | |
| ! | AATATGGAATCATCGATTAG+TGG | + | tig0024576:44445-44464 | Msa1418330:CDS | 30.0% |
| ! | ATATGGAATCATCGATTAGT+GGG | + | tig0024576:44446-44465 | Msa1418330:CDS | 30.0% |
| AATGATCGTTTATACAGAGT+GGG | - | tig0024576:44594-44613 | None:intergenic | 30.0% | |
| ACTCTGTATAAACGATCATT+GGG | + | tig0024576:44594-44613 | Msa1418330:CDS | 30.0% | |
| TTCTCCAATTCATCCAATTT+GGG | - | tig0024576:44622-44641 | None:intergenic | 30.0% | |
| TTTCTCCAATTCATCCAATT+TGG | - | tig0024576:44623-44642 | None:intergenic | 30.0% | |
| CAATGATCGTTTATACAGAG+TGG | - | tig0024576:44595-44614 | None:intergenic | 35.0% | |
| CACTCTGTATAAACGATCAT+TGG | + | tig0024576:44593-44612 | Msa1418330:CDS | 35.0% | |
| CTCTGTATAAACGATCATTG+GGG | + | tig0024576:44595-44614 | Msa1418330:CDS | 35.0% | |
| ! | TTAGTGGGTCAGATGTATTG+TGG | + | tig0024576:44461-44480 | Msa1418330:CDS | 40.0% |
| ! | TAGTGGGTCAGATGTATTGT+GGG | + | tig0024576:44462-44481 | Msa1418330:CDS | 40.0% |
| TCGCAAGATCAAGATCAAGA+AGG | + | tig0024576:44507-44526 | Msa1418330:CDS | 40.0% | |
| CGAACAATAACATCGGTATG+AGG | - | tig0024576:44571-44590 | None:intergenic | 40.0% | |
| !! | GAGTATGTTCTGAAAGGTGT+AGG | - | tig0024576:44657-44676 | None:intergenic | 40.0% |
| TGTTCCAACGTTGTCATCTC+AGG | + | tig0024576:44352-44371 | Msa1418330:CDS | 45.0% | |
| AGTGGGTATTCAGGCCAATA+TGG | + | tig0024576:44429-44448 | Msa1418330:CDS | 45.0% | |
| GAGTGGGCGAACAATAACAT+CGG | - | tig0024576:44578-44597 | None:intergenic | 45.0% | |
| GGGTCCCAAATTGGATGAAT+TGG | + | tig0024576:44615-44634 | Msa1418330:CDS | 45.0% | |
| TGCTCCTGAGATGACAACGT+TGG | - | tig0024576:44359-44378 | None:intergenic | 50.0% | |
| CGGCCAGTTCTCTACAATCA+CGG | + | tig0024576:44392-44411 | Msa1418330:CDS | 50.0% | |
| CCAGTTCTCTACAATCACGG+CGG | + | tig0024576:44395-44414 | Msa1418330:CDS | 50.0% | |
| GCATCATCGAGTGGGTATTC+AGG | + | tig0024576:44420-44439 | Msa1418330:CDS | 50.0% | |
| CGATCATTGGGGTCCCAAAT+TGG | + | tig0024576:44606-44625 | Msa1418330:CDS | 50.0% | |
| ! | CTCAGGAGCACACGTTGTCT+TGG | + | tig0024576:44369-44388 | Msa1418330:CDS | 55.0% |
| ! | AGGAGCACACGTTGTCTTGG+CGG | + | tig0024576:44372-44391 | Msa1418330:CDS | 55.0% |
| CCGCCGTGATTGTAGAGAAC+TGG | - | tig0024576:44398-44417 | None:intergenic | 55.0% | |
| GTTCTCTACAATCACGGCGG+CGG | + | tig0024576:44398-44417 | Msa1418330:CDS | 55.0% | |
| GGAGTCTCTTCCATGCGACT+GGG | - | tig0024576:44550-44569 | None:intergenic | 55.0% | |
| AGGAGTCTCTTCCATGCGAC+TGG | - | tig0024576:44551-44570 | None:intergenic | 55.0% | |
| TTCCATGCGACTGGGCGCAG+AGG | - | tig0024576:44542-44561 | None:intergenic | 65.0% | |
| ACGGCGGCGGCATCATCGAG+TGG | + | tig0024576:44411-44430 | Msa1418330:CDS | 70.0% | |
| CGGCGGCGGCATCATCGAGT+GGG | + | tig0024576:44412-44431 | Msa1418330:CDS | 70.0% | |
| CATGCGACTGGGCGCAGAGG+AGG | - | tig0024576:44539-44558 | None:intergenic | 70.0% | |
| CTCCTCTGCGCCCAGTCGCA+TGG | + | tig0024576:44537-44556 | Msa1418330:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024576 | gene | 44340 | 44681 | 44340 | ID=Msa1418330;Name=Msa1418330 |
| tig0024576 | mRNA | 44340 | 44681 | 44340 | ID=Msa1418330-mRNA-1;Parent=Msa1418330;Name=Msa1418330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|113 |
| tig0024576 | exon | 44340 | 44681 | 44340 | ID=Msa1418330-mRNA-1:exon:289;Parent=Msa1418330-mRNA-1 |
| tig0024576 | CDS | 44340 | 44681 | 44340 | ID=Msa1418330-mRNA-1:cds;Parent=Msa1418330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
