Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538000 | XP_024637536.1 | 80.769 | 234 | 6 | 1 | 1 | 195 | 1 | 234 | 3.16e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538000 | A0A072UFR3 | 80.342 | 234 | 6 | 2 | 1 | 195 | 1 | 233 | 5.62e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0538000 | 0.828832 | 7.218836e-55 | -8.615850e-47 |
| Msa0005160 | Msa0538000 | 0.814353 | 1.608995e-51 | -8.615850e-47 |
| Msa0008850 | Msa0538000 | 0.861871 | 7.567050e-64 | -8.615850e-47 |
| Msa0012460 | Msa0538000 | 0.813420 | 2.583492e-51 | -8.615850e-47 |
| Msa0017120 | Msa0538000 | 0.826493 | 2.632616e-54 | -8.615850e-47 |
| Msa0020630 | Msa0538000 | 0.800071 | 1.711536e-48 | -8.615850e-47 |
| Msa0038310 | Msa0538000 | 0.821713 | 3.488250e-53 | -8.615850e-47 |
| Msa0044380 | Msa0538000 | 0.805375 | 1.376114e-49 | -8.615850e-47 |
| Msa0047470 | Msa0538000 | 0.867372 | 1.436424e-65 | -8.615850e-47 |
| Msa0057260 | Msa0538000 | 0.805984 | 1.025071e-49 | -8.615850e-47 |
| Msa0057740 | Msa0538000 | 0.832370 | 9.826298e-56 | -8.615850e-47 |
| Msa0065390 | Msa0538000 | 0.823665 | 1.225968e-53 | -8.615850e-47 |
| Msa0083160 | Msa0538000 | 0.809710 | 1.653661e-50 | -8.615850e-47 |
| Msa0086090 | Msa0538000 | 0.804722 | 1.884455e-49 | -8.615850e-47 |
| Msa0089210 | Msa0538000 | 0.812830 | 3.479374e-51 | -8.615850e-47 |
| Msa0094970 | Msa0538000 | 0.823061 | 1.696705e-53 | -8.615850e-47 |
| Msa0098700 | Msa0538000 | 0.831236 | 1.871858e-55 | -8.615850e-47 |
| Msa0100250 | Msa0538000 | 0.847627 | 1.026005e-59 | -8.615850e-47 |
| Msa0103060 | Msa0538000 | 0.853912 | 1.746484e-61 | -8.615850e-47 |
| Msa0110710 | Msa0538000 | 0.818483 | 1.914567e-52 | -8.615850e-47 |
| Msa0114250 | Msa0538000 | 0.800463 | 1.424282e-48 | -8.615850e-47 |
| Msa0116950 | Msa0538000 | 0.820689 | 6.005187e-53 | -8.615850e-47 |
| Msa0125230 | Msa0538000 | 0.815140 | 1.076552e-51 | -8.615850e-47 |
| Msa0132620 | Msa0538000 | 0.800006 | 1.764252e-48 | -8.615850e-47 |
| Msa0144340 | Msa0538000 | 0.809050 | 2.291362e-50 | -8.615850e-47 |
| Msa0146470 | Msa0538000 | 0.830718 | 2.508517e-55 | -8.615850e-47 |
| Msa0149070 | Msa0538000 | 0.815405 | 9.402028e-52 | -8.615850e-47 |
| Msa0157020 | Msa0538000 | 0.827636 | 1.402525e-54 | -8.615850e-47 |
| Msa0159750 | Msa0538000 | 0.800158 | 1.643045e-48 | -8.615850e-47 |
| Msa0172370 | Msa0538000 | 0.800311 | 1.529282e-48 | -8.615850e-47 |
| Msa0175530 | Msa0538000 | 0.802713 | 4.922192e-49 | -8.615850e-47 |
| Msa0178940 | Msa0538000 | 0.850750 | 1.387122e-60 | -8.615850e-47 |
| Msa0185390 | Msa0538000 | 0.816025 | 6.840126e-52 | -8.615850e-47 |
| Msa0203180 | Msa0538000 | 0.812071 | 5.097805e-51 | -8.615850e-47 |
| Msa0210880 | Msa0538000 | 0.828907 | 6.924364e-55 | -8.615850e-47 |
| Msa0216210 | Msa0538000 | 0.813855 | 2.071824e-51 | -8.615850e-47 |
| Msa0217470 | Msa0538000 | 0.810664 | 1.030236e-50 | -8.615850e-47 |
| Msa0222070 | Msa0538000 | 0.828905 | 6.930404e-55 | -8.615850e-47 |
| Msa0222120 | Msa0538000 | 0.827437 | 1.564994e-54 | -8.615850e-47 |
| Msa0230980 | Msa0538000 | 0.802620 | 5.145049e-49 | -8.615850e-47 |
| Msa0365150 | Msa0538000 | 0.825808 | 3.830880e-54 | -8.615850e-47 |
| Msa0369780 | Msa0538000 | 0.809036 | 2.307282e-50 | -8.615850e-47 |
| Msa0375430 | Msa0538000 | 0.812503 | 4.102213e-51 | -8.615850e-47 |
| Msa0376900 | Msa0538000 | 0.804666 | 1.936272e-49 | -8.615850e-47 |
| Msa0380430 | Msa0538000 | 0.830892 | 2.273506e-55 | -8.615850e-47 |
| Msa0382500 | Msa0538000 | 0.801761 | 7.729359e-49 | -8.615850e-47 |
| Msa0387790 | Msa0538000 | 0.843164 | 1.657794e-58 | -8.615850e-47 |
| Msa0401340 | Msa0538000 | 0.812796 | 3.539266e-51 | -8.615850e-47 |
| Msa0417150 | Msa0538000 | 0.844431 | 7.592372e-59 | -8.615850e-47 |
| Msa0421800 | Msa0538000 | 0.869025 | 4.217368e-66 | -8.615850e-47 |
| Msa0426860 | Msa0538000 | 0.800923 | 1.147792e-48 | -8.615850e-47 |
| Msa0427050 | Msa0538000 | 0.822836 | 1.913638e-53 | -8.615850e-47 |
| Msa0432680 | Msa0538000 | 0.800781 | 1.227013e-48 | -8.615850e-47 |
| Msa0438460 | Msa0538000 | 0.816881 | 4.399421e-52 | -8.615850e-47 |
| Msa0456480 | Msa0538000 | 0.825580 | 4.338734e-54 | -8.615850e-47 |
| Msa0458790 | Msa0538000 | 0.804657 | 1.944535e-49 | -8.615850e-47 |
| Msa0467080 | Msa0538000 | 0.819688 | 1.018507e-52 | -8.615850e-47 |
| Msa0467800 | Msa0538000 | 0.847970 | 8.253602e-60 | -8.615850e-47 |
| Msa0467880 | Msa0538000 | 0.841366 | 4.965038e-58 | -8.615850e-47 |
| Msa0481050 | Msa0538000 | 0.804867 | 1.757435e-49 | -8.615850e-47 |
| Msa0242290 | Msa0538000 | 0.801287 | 9.669203e-49 | -8.615850e-47 |
| Msa0250520 | Msa0538000 | 0.814080 | 1.848453e-51 | -8.615850e-47 |
| Msa0251150 | Msa0538000 | 0.812650 | 3.809601e-51 | -8.615850e-47 |
| Msa0259330 | Msa0538000 | 0.825504 | 4.522540e-54 | -8.615850e-47 |
| Msa0263620 | Msa0538000 | 0.826943 | 2.054919e-54 | -8.615850e-47 |
| Msa0270460 | Msa0538000 | 0.822977 | 1.774748e-53 | -8.615850e-47 |
| Msa0280140 | Msa0538000 | 0.800272 | 1.557526e-48 | -8.615850e-47 |
| Msa0282860 | Msa0538000 | 0.805830 | 1.104743e-49 | -8.615850e-47 |
| Msa0284780 | Msa0538000 | 0.810983 | 8.786422e-51 | -8.615850e-47 |
| Msa0284870 | Msa0538000 | 0.823229 | 1.550118e-53 | -8.615850e-47 |
| Msa0303500 | Msa0538000 | 0.800453 | 1.430969e-48 | -8.615850e-47 |
| Msa0304870 | Msa0538000 | 0.809902 | 1.503594e-50 | -8.615850e-47 |
| Msa0333900 | Msa0538000 | 0.816994 | 4.150516e-52 | -8.615850e-47 |
| Msa0334020 | Msa0538000 | 0.818905 | 1.535463e-52 | -8.615850e-47 |
| Msa0336270 | Msa0538000 | 0.832002 | 1.212059e-55 | -8.615850e-47 |
| Msa0341260 | Msa0538000 | 0.807429 | 5.076058e-50 | -8.615850e-47 |
| Msa0354390 | Msa0538000 | 0.802801 | 4.722263e-49 | -8.615850e-47 |
| Msa0485280 | Msa0538000 | 0.809422 | 1.907216e-50 | -8.615850e-47 |
| Msa0500490 | Msa0538000 | 0.805394 | 1.363624e-49 | -8.615850e-47 |
| Msa0509540 | Msa0538000 | 0.805624 | 1.219972e-49 | -8.615850e-47 |
| Msa0512310 | Msa0538000 | 0.833346 | 5.623144e-56 | -8.615850e-47 |
| Msa0514260 | Msa0538000 | 0.871155 | 8.477448e-67 | -8.615850e-47 |
| Msa0534420 | Msa0538000 | 0.815690 | 8.124091e-52 | -8.615850e-47 |
| Msa0538000 | Msa0542040 | 0.802690 | 4.976995e-49 | -8.615850e-47 |
| Msa0538000 | Msa0545230 | 0.811049 | 8.503407e-51 | -8.615850e-47 |
| Msa0538000 | Msa0546740 | 0.805425 | 1.343132e-49 | -8.615850e-47 |
| Msa0538000 | Msa0549740 | 0.810636 | 1.044766e-50 | -8.615850e-47 |
| Msa0538000 | Msa0550630 | 0.842940 | 1.902366e-58 | -8.615850e-47 |
| Msa0538000 | Msa0553520 | 0.811065 | 8.434563e-51 | -8.615850e-47 |
| Msa0538000 | Msa0576420 | 0.802241 | 6.160752e-49 | -8.615850e-47 |
| Msa0538000 | Msa0576600 | 0.810236 | 1.274614e-50 | -8.615850e-47 |
| Msa0538000 | Msa0587900 | 0.807065 | 6.062491e-50 | -8.615850e-47 |
| Msa0538000 | Msa0595780 | 0.821144 | 4.720877e-53 | -8.615850e-47 |
| Msa0538000 | Msa0600390 | 0.807911 | 4.010196e-50 | -8.615850e-47 |
| Msa0538000 | Msa0606060 | 0.847435 | 1.158437e-59 | -8.615850e-47 |
| Msa0538000 | Msa0607280 | 0.819144 | 1.355389e-52 | -8.615850e-47 |
| Msa0538000 | Msa0607300 | 0.803558 | 3.292051e-49 | -8.615850e-47 |
| Msa0538000 | Msa0614230 | 0.801072 | 1.069903e-48 | -8.615850e-47 |
| Msa0538000 | Msa0615850 | 0.807782 | 4.272138e-50 | -8.615850e-47 |
| Msa0538000 | Msa0617830 | 0.813894 | 2.031642e-51 | -8.615850e-47 |
| Msa0538000 | Msa0619330 | 0.811299 | 7.506486e-51 | -8.615850e-47 |
| Msa0538000 | Msa0622390 | 0.828030 | 1.127469e-54 | -8.615850e-47 |
| Msa0538000 | Msa0625330 | 0.821597 | 3.710201e-53 | -8.615850e-47 |
| Msa0538000 | Msa0628060 | 0.815087 | 1.106599e-51 | -8.615850e-47 |
| Msa0538000 | Msa0640880 | 0.805284 | 1.438139e-49 | -8.615850e-47 |
| Msa0538000 | Msa0647000 | 0.806626 | 7.508821e-50 | -8.615850e-47 |
| Msa0538000 | Msa0649310 | 0.804229 | 2.388189e-49 | -8.615850e-47 |
| Msa0538000 | Msa0656270 | 0.810448 | 1.146932e-50 | -8.615850e-47 |
| Msa0538000 | Msa0656680 | 0.805559 | 1.259368e-49 | -8.615850e-47 |
| Msa0538000 | Msa0659040 | 0.802883 | 4.541244e-49 | -8.615850e-47 |
| Msa0538000 | Msa0660820 | 0.829931 | 3.904769e-55 | -8.615850e-47 |
| Msa0538000 | Msa0677110 | 0.801255 | 9.813129e-49 | -8.615850e-47 |
| Msa0538000 | Msa0686610 | 0.847238 | 1.312297e-59 | -8.615850e-47 |
| Msa0538000 | Msa0690720 | 0.816471 | 5.436344e-52 | -8.615850e-47 |
| Msa0538000 | Msa0698900 | 0.824532 | 7.669015e-54 | -8.615850e-47 |
| Msa0538000 | Msa0700070 | 0.802255 | 6.117918e-49 | -8.615850e-47 |
| Msa0538000 | Msa0702070 | 0.836969 | 6.851199e-57 | -8.615850e-47 |
| Msa0538000 | Msa0702120 | 0.839534 | 1.496205e-57 | -8.615850e-47 |
| Msa0538000 | Msa0704570 | 0.820183 | 7.847641e-53 | -8.615850e-47 |
| Msa0538000 | Msa0704990 | 0.810819 | 9.534452e-51 | -8.615850e-47 |
| Msa0538000 | Msa0705030 | 0.810173 | 1.315015e-50 | -8.615850e-47 |
| Msa0538000 | Msa0719340 | 0.804931 | 1.704434e-49 | -8.615850e-47 |
| Msa0538000 | Msa0724050 | 0.802341 | 5.873420e-49 | -8.615850e-47 |
| Msa0538000 | Msa0733000 | 0.802437 | 5.612370e-49 | -8.615850e-47 |
| Msa0538000 | Msa0738870 | 0.825702 | 4.057705e-54 | -8.615850e-47 |
| Msa0538000 | Msa0739610 | 0.822120 | 2.807254e-53 | -8.615850e-47 |
| Msa0538000 | Msa0740350 | -0.806318 | 8.717553e-50 | -8.615850e-47 |
| Msa0538000 | Msa0758820 | 0.804428 | 2.170793e-49 | -8.615850e-47 |
| Msa0538000 | Msa0763880 | 0.804149 | 2.480793e-49 | -8.615850e-47 |
| Msa0538000 | Msa0763910 | 0.801162 | 1.025335e-48 | -8.615850e-47 |
| Msa0538000 | Msa0766880 | 0.818867 | 1.566240e-52 | -8.615850e-47 |
| Msa0538000 | Msa0772210 | 0.814478 | 1.509803e-51 | -8.615850e-47 |
| Msa0538000 | Msa0781490 | -0.817343 | 3.464462e-52 | -8.615850e-47 |
| Msa0538000 | Msa0783270 | 0.825203 | 5.326305e-54 | -8.615850e-47 |
| Msa0538000 | Msa0819320 | 0.804777 | 1.835596e-49 | -8.615850e-47 |
| Msa0538000 | Msa0819330 | 0.827245 | 1.740240e-54 | -8.615850e-47 |
| Msa0538000 | Msa0819360 | 0.811857 | 5.677122e-51 | -8.615850e-47 |
| Msa0538000 | Msa0819370 | 0.802991 | 4.314413e-49 | -8.615850e-47 |
| Msa0538000 | Msa0838660 | 0.843740 | 1.163597e-58 | -8.615850e-47 |
| Msa0538000 | Msa0850740 | 0.823003 | 1.749622e-53 | -8.615850e-47 |
| Msa0538000 | Msa0851740 | 0.807590 | 4.693693e-50 | -8.615850e-47 |
| Msa0538000 | Msa0859520 | 0.829554 | 4.822819e-55 | -8.615850e-47 |
| Msa0538000 | Msa0859530 | 0.812198 | 4.783530e-51 | -8.615850e-47 |
| Msa0538000 | Msa0899700 | 0.804749 | 1.860686e-49 | -8.615850e-47 |
| Msa0538000 | Msa0906720 | 0.804044 | 2.609693e-49 | -8.615850e-47 |
| Msa0538000 | Msa0910650 | 0.804893 | 1.735685e-49 | -8.615850e-47 |
| Msa0538000 | Msa0925160 | 0.802669 | 5.027765e-49 | -8.615850e-47 |
| Msa0538000 | Msa0929820 | 0.806865 | 6.682416e-50 | -8.615850e-47 |
| Msa0538000 | Msa0934830 | 0.860688 | 1.734442e-63 | -8.615850e-47 |
| Msa0538000 | Msa0955310 | 0.835022 | 2.136837e-56 | -8.615850e-47 |
| Msa0538000 | Msa0964680 | 0.800207 | 1.606060e-48 | -8.615850e-47 |
| Msa0538000 | Msa0971860 | 0.859577 | 3.757258e-63 | -8.615850e-47 |
| Msa0538000 | Msa0975080 | 0.802685 | 4.989793e-49 | -8.615850e-47 |
| Msa0538000 | Msa0992590 | 0.808169 | 3.534900e-50 | -8.615850e-47 |
| Msa0538000 | Msa1002040 | 0.825591 | 4.311732e-54 | -8.615850e-47 |
| Msa0538000 | Msa1014350 | 0.803705 | 3.067996e-49 | -8.615850e-47 |
| Msa0538000 | Msa1033160 | 0.815908 | 7.264464e-52 | -8.615850e-47 |
| Msa0538000 | Msa1038320 | 0.805961 | 1.036638e-49 | -8.615850e-47 |
| Msa0538000 | Msa1043870 | 0.843450 | 1.390704e-58 | -8.615850e-47 |
| Msa0538000 | Msa1044040 | 0.800205 | 1.607612e-48 | -8.615850e-47 |
| Msa0538000 | Msa1055360 | 0.825200 | 5.335005e-54 | -8.615850e-47 |
| Msa0538000 | Msa1063920 | 0.802587 | 5.226450e-49 | -8.615850e-47 |
| Msa0538000 | Msa1067910 | 0.805326 | 1.409120e-49 | -8.615850e-47 |
| Msa0538000 | Msa1070900 | 0.839105 | 1.932786e-57 | -8.615850e-47 |
| Msa0538000 | Msa1081850 | 0.839729 | 1.331403e-57 | -8.615850e-47 |
| Msa0538000 | Msa1090230 | 0.822040 | 2.929445e-53 | -8.615850e-47 |
| Msa0538000 | Msa1093390 | 0.808719 | 2.697774e-50 | -8.615850e-47 |
| Msa0538000 | Msa1102180 | 0.808671 | 2.762024e-50 | -8.615850e-47 |
| Msa0538000 | Msa1102540 | 0.801692 | 7.985439e-49 | -8.615850e-47 |
| Msa0538000 | Msa1111670 | 0.807496 | 4.913628e-50 | -8.615850e-47 |
| Msa0538000 | Msa1115580 | 0.806452 | 8.168929e-50 | -8.615850e-47 |
| Msa0538000 | Msa1116010 | 0.823276 | 1.511642e-53 | -8.615850e-47 |
| Msa0538000 | Msa1126910 | 0.800489 | 1.407237e-48 | -8.615850e-47 |
| Msa0538000 | Msa1130660 | 0.816703 | 4.823665e-52 | -8.615850e-47 |
| Msa0538000 | Msa1161160 | 0.829596 | 4.710832e-55 | -8.615850e-47 |
| Msa0538000 | Msa1166180 | 0.816261 | 6.058519e-52 | -8.615850e-47 |
| Msa0538000 | Msa1166280 | 0.812202 | 4.773957e-51 | -8.615850e-47 |
| Msa0538000 | Msa1171340 | 0.802149 | 6.435116e-49 | -8.615850e-47 |
| Msa0538000 | Msa1198450 | 0.834261 | 3.320561e-56 | -8.615850e-47 |
| Msa0538000 | Msa1199210 | 0.803416 | 3.523365e-49 | -8.615850e-47 |
| Msa0538000 | Msa1214900 | 0.802685 | 4.988382e-49 | -8.615850e-47 |
| Msa0538000 | Msa1220740 | 0.845901 | 3.040636e-59 | -8.615850e-47 |
| Msa0538000 | Msa1226600 | 0.806565 | 7.734282e-50 | -8.615850e-47 |
| Msa0538000 | Msa1233770 | 0.824769 | 6.745236e-54 | -8.615850e-47 |
| Msa0538000 | Msa1269390 | 0.815813 | 7.628450e-52 | -8.615850e-47 |
| Msa0538000 | Msa1276080 | 0.826097 | 3.269608e-54 | -8.615850e-47 |
| Msa0538000 | Msa1286910 | 0.812906 | 3.348970e-51 | -8.615850e-47 |
| Msa0538000 | Msa1288730 | 0.847002 | 1.522738e-59 | -8.615850e-47 |
| Msa0538000 | Msa1298740 | 0.803388 | 3.570791e-49 | -8.615850e-47 |
| Msa0538000 | Msa1302780 | 0.801273 | 9.734517e-49 | -8.615850e-47 |
| Msa0538000 | Msa1306200 | 0.805519 | 1.283445e-49 | -8.615850e-47 |
| Msa0538000 | Msa1309100 | 0.804394 | 2.206772e-49 | -8.615850e-47 |
| Msa0538000 | Msa1325650 | 0.815800 | 7.678956e-52 | -8.615850e-47 |
| Msa0538000 | Msa1326000 | 0.807320 | 5.353710e-50 | -8.615850e-47 |
| Msa0538000 | Msa1327040 | 0.827951 | 1.177963e-54 | -8.615850e-47 |
| Msa0538000 | Msa1334650 | 0.838664 | 2.514548e-57 | -8.615850e-47 |
| Msa0538000 | Msa1341790 | 0.810728 | 9.977060e-51 | -8.615850e-47 |
| Msa0538000 | Msa1349360 | 0.813513 | 2.464221e-51 | -8.615850e-47 |
| Msa0538000 | Msa1352290 | 0.809703 | 1.659575e-50 | -8.615850e-47 |
| Msa0538000 | Msa1365210 | 0.848778 | 4.932725e-60 | -8.615850e-47 |
| Msa0538000 | Msa1367940 | 0.813613 | 2.342509e-51 | -8.615850e-47 |
| Msa0538000 | Msa1380720 | 0.811950 | 5.417518e-51 | -8.615850e-47 |
| Msa0538000 | Msa1381130 | 0.813926 | 1.998403e-51 | -8.615850e-47 |
| Msa0538000 | Msa1392680 | 0.804666 | 1.936272e-49 | -8.615850e-47 |
| Msa0538000 | Msa1405770 | 0.805723 | 1.163106e-49 | -8.615850e-47 |
| Msa0538000 | Msa1406230 | 0.809425 | 1.904605e-50 | -8.615850e-47 |
| Msa0538000 | Msa1412080 | 0.803688 | 3.093783e-49 | -8.615850e-47 |
| Msa0538000 | Msa1423190 | 0.813620 | 2.334256e-51 | -8.615850e-47 |
| Msa0538000 | Msa1428440 | 0.801028 | 1.092107e-48 | -8.615850e-47 |
| Msa0538000 | Msa1435470 | 0.822502 | 2.289090e-53 | -8.615850e-47 |
| Msa0538000 | Msa1439800 | 0.821106 | 4.816013e-53 | -8.615850e-47 |
| Msa0538000 | Msa1440180 | 0.859298 | 4.556997e-63 | -8.615850e-47 |
| Msa0538000 | Msa1449740 | 0.857655 | 1.408061e-62 | -8.615850e-47 |
| Msa0538000 | Msa1458920 | 0.833732 | 4.502906e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538000 | MtrunA17_Chr4g0000291 | 80.342 | 234 | 6 | 2 | 1 | 195 | 1 | 233 | 1.08e-131 | 369 |
| Msa0538000 | MtrunA17_Chr4g0000311 | 92.683 | 41 | 3 | 0 | 1 | 41 | 1 | 41 | 2.73e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538000 | AT3G20270.1 | 45.581 | 215 | 75 | 4 | 14 | 189 | 21 | 232 | 4.87e-59 | 196 |
| Msa0538000 | AT3G20270.3 | 45.581 | 215 | 75 | 4 | 14 | 189 | 21 | 232 | 4.87e-59 | 196 |
Find 52 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCTGTTCTTGACAATT+TGG | 0.246299 | 4_1:-17111895 | Msa0538000:CDS |
| TTGTACATTTAGTGTGTGTT+TGG | 0.316067 | 4_1:+17111278 | None:intergenic |
| AACACACACTTAATATGCTT+TGG | 0.328513 | 4_1:+17111438 | None:intergenic |
| ATCTCATCCACTTGTATATC+AGG | 0.333453 | 4_1:+17112360 | None:intergenic |
| TGTGTGTTTGGGAAGGCTTT+TGG | 0.364833 | 4_1:+17111290 | None:intergenic |
| ACTGATCTAGTGTAAGGATA+TGG | 0.366614 | 4_1:+17111611 | None:intergenic |
| TGATGATTTCAGAAGGTTCA+TGG | 0.389939 | 4_1:-17112418 | Msa0538000:intron |
| ATGAACTTGTATCTCGAATC+TGG | 0.411354 | 4_1:-17111917 | Msa0538000:CDS |
| ACCTCTATAATCACATGATC+TGG | 0.411609 | 4_1:+17112719 | None:intergenic |
| TAAGAACAGAAGTGAGTGAT+TGG | 0.415750 | 4_1:-17112691 | Msa0538000:CDS |
| TTTCACGTTGGTTGTGCATT+GGG | 0.419977 | 4_1:-17111350 | Msa0538000:three_prime_UTR |
| CCAATACCATCTGCTTGGTT+AGG | 0.422828 | 4_1:-17111482 | Msa0538000:CDS |
| TGTACATTTAGTGTGTGTTT+GGG | 0.435246 | 4_1:+17111279 | None:intergenic |
| TATTTGTTGACTTATATGTA+AGG | 0.446098 | 4_1:+17112395 | None:intergenic |
| CCTAACCAAGCAGATGGTAT+TGG | 0.447991 | 4_1:+17111482 | None:intergenic |
| ATACTTCACGGAACCATGAT+TGG | 0.450822 | 4_1:-17112270 | Msa0538000:intron |
| TACAAGTGGATGAGATTGTT+GGG | 0.457723 | 4_1:-17112353 | Msa0538000:CDS |
| ATATGATGACTACATGTCAT+TGG | 0.464014 | 4_1:-17111223 | Msa0538000:three_prime_UTR |
| TGTTGGCATGTGCTAAAAGT+AGG | 0.469168 | 4_1:-17111511 | Msa0538000:CDS |
| ACTTTGACTGATCTAGTGTA+AGG | 0.474599 | 4_1:+17111605 | None:intergenic |
| TCCACCATGAGGAGGCATAA+TGG | 0.492329 | 4_1:+17112293 | None:intergenic |
| TTCAGCCAATACCATCTGCT+TGG | 0.495555 | 4_1:-17111487 | Msa0538000:CDS |
| GCAGATCAGTTTATTGCCAA+TGG | 0.496622 | 4_1:-17111960 | Msa0538000:intron |
| AGATTCGAGATACAAGTTCA+TGG | 0.497424 | 4_1:+17111919 | None:intergenic |
| CTAGATCAGTCAAAGTTCAA+TGG | 0.503366 | 4_1:-17111598 | Msa0538000:CDS |
| CCTCATGGTGGAATACTTCA+CGG | 0.510920 | 4_1:-17112282 | Msa0538000:CDS |
| TACGTCTCTTGACTTGCCAT+TGG | 0.513346 | 4_1:+17111944 | None:intergenic |
| TGTAGATTATTATGATATGT+TGG | 0.518385 | 4_1:-17111528 | Msa0538000:CDS |
| CTTAAACGCCTTGCACATGA+AGG | 0.518985 | 4_1:-17111846 | Msa0538000:CDS |
| TCCAGATCATGTGATTATAG+AGG | 0.519370 | 4_1:-17112720 | Msa0538000:CDS |
| CATGTAGTCATCATATATAA+AGG | 0.522666 | 4_1:+17111230 | None:intergenic |
| GTGAATTGTGCATTGGGAAG+TGG | 0.528753 | 4_1:-17111323 | Msa0538000:three_prime_UTR |
| AAGGCGTTTAAGTAAGCAAA+AGG | 0.541095 | 4_1:+17111857 | None:intergenic |
| CATTTAGTGTGTGTTTGGGA+AGG | 0.548836 | 4_1:+17111283 | None:intergenic |
| AAGAACAGAAGTGAGTGATT+GGG | 0.550455 | 4_1:-17112690 | Msa0538000:CDS |
| GGGGCATGCCATACCAATCA+TGG | 0.551161 | 4_1:+17112257 | None:intergenic |
| CTTTCCATTATGCCTCCTCA+TGG | 0.553623 | 4_1:-17112297 | Msa0538000:CDS |
| GGTAGCGTGAATTGTGCATT+GGG | 0.561073 | 4_1:-17111329 | Msa0538000:three_prime_UTR |
| ATACAAGTGGATGAGATTGT+TGG | 0.562800 | 4_1:-17112354 | Msa0538000:CDS |
| GATTCGAGATACAAGTTCAT+GGG | 0.566517 | 4_1:+17111920 | None:intergenic |
| CTACATGGTTGAAGTAATCA+CGG | 0.589465 | 4_1:+17111546 | None:intergenic |
| GATCAGTCAAAGTTCAATGG+AGG | 0.590714 | 4_1:-17111595 | Msa0538000:CDS |
| GGGTAGCGTGAATTGTGCAT+TGG | 0.595883 | 4_1:-17111330 | Msa0538000:three_prime_UTR |
| ACATATCATAATAATCTACA+TGG | 0.601342 | 4_1:+17111531 | None:intergenic |
| ATCAGTCAAAGTTCAATGGA+GGG | 0.611627 | 4_1:-17111594 | Msa0538000:CDS |
| TAATAACCTAACCAAGCAGA+TGG | 0.613735 | 4_1:+17111476 | None:intergenic |
| TTACATCTCCTTCATGTGCA+AGG | 0.614326 | 4_1:+17111838 | None:intergenic |
| TCCATTATGCCTCCTCATGG+TGG | 0.618370 | 4_1:-17112294 | Msa0538000:CDS |
| TTCTGATCCTGATATACAAG+TGG | 0.625145 | 4_1:-17112367 | Msa0538000:CDS |
| TGAAGTATTCCACCATGAGG+AGG | 0.648479 | 4_1:+17112285 | None:intergenic |
| TTGGAGCTTTAGCCAAAACG+TGG | 0.682733 | 4_1:+17111389 | None:intergenic |
| CCGTGAAGTATTCCACCATG+AGG | 0.714100 | 4_1:+17112282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATAATTTTCAACATAAT+TGG | + | chr4_1:17112714-17112733 | None:intergenic | 15.0% |
| !!! | TCTATAATTTTCAACATAAT+TGG | + | chr4_1:17112714-17112733 | None:intergenic | 15.0% |
| !!! | TATTTGTTGACTTATATGTA+AGG | + | chr4_1:17111572-17111591 | None:intergenic | 20.0% |
| !! | TTCATTTCAATTAGAATCAT+AGG | + | chr4_1:17111877-17111896 | None:intergenic | 20.0% |
| !! | ACATATCATAATAATCTACA+TGG | + | chr4_1:17112436-17112455 | None:intergenic | 20.0% |
| !! | TGTAGATTATTATGATATGT+TGG | - | chr4_1:17112436-17112455 | Msa0538000:intron | 20.0% |
| !!! | TATTTGTTGACTTATATGTA+AGG | + | chr4_1:17111572-17111591 | None:intergenic | 20.0% |
| !! | TTCATTTCAATTAGAATCAT+AGG | + | chr4_1:17111877-17111896 | None:intergenic | 20.0% |
| !! | ACATATCATAATAATCTACA+TGG | + | chr4_1:17112436-17112455 | None:intergenic | 20.0% |
| !! | TGTAGATTATTATGATATGT+TGG | - | chr4_1:17112436-17112455 | Msa0538000:intron | 20.0% |
| ! | TGTAACAACAAAAGTAAAGA+AGG | + | chr4_1:17111734-17111753 | None:intergenic | 25.0% |
| !! | CTTATATCTTTATGTCCTTT+TGG | - | chr4_1:17111754-17111773 | Msa0538000:intron | 25.0% |
| !! | AATGAATTAGTTCTCTAAGT+TGG | - | chr4_1:17111891-17111910 | Msa0538000:CDS | 25.0% |
| ! | ATTTCTTAGATTTGTGCAAA+AGG | - | chr4_1:17112221-17112240 | Msa0538000:intron | 25.0% |
| !!! | TTTTTTCATTTTCAACGGTA+TGG | + | chr4_1:17112554-17112573 | None:intergenic | 25.0% |
| !!! | GTGGTTTTTTTCATTTTCAA+CGG | + | chr4_1:17112559-17112578 | None:intergenic | 25.0% |
| !! | AAATGAAAAAAACCACGTTT+TGG | - | chr4_1:17112563-17112582 | Msa0538000:intron | 25.0% |
| ! | CATGTAGTCATCATATATAA+AGG | + | chr4_1:17112737-17112756 | None:intergenic | 25.0% |
| ! | TGTAACAACAAAAGTAAAGA+AGG | + | chr4_1:17111734-17111753 | None:intergenic | 25.0% |
| !! | CTTATATCTTTATGTCCTTT+TGG | - | chr4_1:17111754-17111773 | Msa0538000:intron | 25.0% |
| !! | AATGAATTAGTTCTCTAAGT+TGG | - | chr4_1:17111891-17111910 | Msa0538000:CDS | 25.0% |
| ! | ATTTCTTAGATTTGTGCAAA+AGG | - | chr4_1:17112221-17112240 | Msa0538000:intron | 25.0% |
| !!! | TTTTTTCATTTTCAACGGTA+TGG | + | chr4_1:17112554-17112573 | None:intergenic | 25.0% |
| !!! | GTGGTTTTTTTCATTTTCAA+CGG | + | chr4_1:17112559-17112578 | None:intergenic | 25.0% |
| !! | AAATGAAAAAAACCACGTTT+TGG | - | chr4_1:17112563-17112582 | Msa0538000:intron | 25.0% |
| ! | CATGTAGTCATCATATATAA+AGG | + | chr4_1:17112737-17112756 | None:intergenic | 25.0% |
| ! | ATCAAGTTTTACTTACCTTC+TGG | + | chr4_1:17111435-17111454 | None:intergenic | 30.0% |
| GATCAAAGATTGTTACAATC+AGG | - | chr4_1:17111452-17111471 | Msa0538000:three_prime_UTR | 30.0% | |
| !! | TGTATGTTGATGATTTCAGA+AGG | - | chr4_1:17111539-17111558 | Msa0538000:CDS | 30.0% |
| ACAACAAAAGTAAAGAAGGT+GGG | + | chr4_1:17111730-17111749 | None:intergenic | 30.0% | |
| AACAACAAAAGTAAAGAAGG+TGG | + | chr4_1:17111731-17111750 | None:intergenic | 30.0% | |
| AGGATCAATTCAGTTTGATA+TGG | + | chr4_1:17111857-17111876 | None:intergenic | 30.0% | |
| TTGGTTTATCTTGTTCTTGT+TGG | - | chr4_1:17111910-17111929 | Msa0538000:CDS | 30.0% | |
| AAAGAGACAAAATGTTGATG+AGG | + | chr4_1:17112289-17112308 | None:intergenic | 30.0% | |
| ! | TTTTTGCAATAACTTTCAGC+AGG | - | chr4_1:17112322-17112341 | Msa0538000:CDS | 30.0% |
| AACACACACTTAATATGCTT+TGG | + | chr4_1:17112529-17112548 | None:intergenic | 30.0% | |
| TGTACATTTAGTGTGTGTTT+GGG | + | chr4_1:17112688-17112707 | None:intergenic | 30.0% | |
| TTGTACATTTAGTGTGTGTT+TGG | + | chr4_1:17112689-17112708 | None:intergenic | 30.0% | |
| ATATGATGACTACATGTCAT+TGG | - | chr4_1:17112741-17112760 | Msa0538000:CDS | 30.0% | |
| ! | ATCAAGTTTTACTTACCTTC+TGG | + | chr4_1:17111435-17111454 | None:intergenic | 30.0% |
| GATCAAAGATTGTTACAATC+AGG | - | chr4_1:17111452-17111471 | Msa0538000:three_prime_UTR | 30.0% | |
| !! | TGTATGTTGATGATTTCAGA+AGG | - | chr4_1:17111539-17111558 | Msa0538000:CDS | 30.0% |
| ACAACAAAAGTAAAGAAGGT+GGG | + | chr4_1:17111730-17111749 | None:intergenic | 30.0% | |
| AACAACAAAAGTAAAGAAGG+TGG | + | chr4_1:17111731-17111750 | None:intergenic | 30.0% | |
| AGGATCAATTCAGTTTGATA+TGG | + | chr4_1:17111857-17111876 | None:intergenic | 30.0% | |
| TTGGTTTATCTTGTTCTTGT+TGG | - | chr4_1:17111910-17111929 | Msa0538000:CDS | 30.0% | |
| AAAGAGACAAAATGTTGATG+AGG | + | chr4_1:17112289-17112308 | None:intergenic | 30.0% | |
| ! | TTTTTGCAATAACTTTCAGC+AGG | - | chr4_1:17112322-17112341 | Msa0538000:CDS | 30.0% |
| AACACACACTTAATATGCTT+TGG | + | chr4_1:17112529-17112548 | None:intergenic | 30.0% | |
| TGTACATTTAGTGTGTGTTT+GGG | + | chr4_1:17112688-17112707 | None:intergenic | 30.0% | |
| TTGTACATTTAGTGTGTGTT+TGG | + | chr4_1:17112689-17112708 | None:intergenic | 30.0% | |
| ATATGATGACTACATGTCAT+TGG | - | chr4_1:17112741-17112760 | Msa0538000:CDS | 30.0% | |
| TCCAGATCATGTGATTATAG+AGG | - | chr4_1:17111244-17111263 | Msa0538000:three_prime_UTR | 35.0% | |
| ACCTCTATAATCACATGATC+TGG | + | chr4_1:17111248-17111267 | None:intergenic | 35.0% | |
| TAAGAACAGAAGTGAGTGAT+TGG | - | chr4_1:17111273-17111292 | Msa0538000:three_prime_UTR | 35.0% | |
| AAGAACAGAAGTGAGTGATT+GGG | - | chr4_1:17111274-17111293 | Msa0538000:three_prime_UTR | 35.0% | |
| GAAACATTCGGTTCAGAAAA+GGG | + | chr4_1:17111333-17111352 | None:intergenic | 35.0% | |
| AGAAACATTCGGTTCAGAAA+AGG | + | chr4_1:17111334-17111353 | None:intergenic | 35.0% | |
| ! | TTTTCTGAACCGAATGTTTC+TGG | - | chr4_1:17111333-17111352 | Msa0538000:three_prime_UTR | 35.0% |
| GTTTGAGAAAGATTGGTGAA+TGG | + | chr4_1:17111383-17111402 | None:intergenic | 35.0% | |
| TCACCAATCTTTCTCAAACT+TGG | - | chr4_1:17111384-17111403 | Msa0538000:three_prime_UTR | 35.0% | |
| ! | TTACAATCAGGATTCGAGTT+CGG | - | chr4_1:17111464-17111483 | Msa0538000:exon | 35.0% |
| TGATGATTTCAGAAGGTTCA+TGG | - | chr4_1:17111546-17111565 | Msa0538000:CDS | 35.0% | |
| TTCTGATCCTGATATACAAG+TGG | - | chr4_1:17111597-17111616 | Msa0538000:CDS | 35.0% | |
| ATCTCATCCACTTGTATATC+AGG | + | chr4_1:17111607-17111626 | None:intergenic | 35.0% | |
| ATACAAGTGGATGAGATTGT+TGG | - | chr4_1:17111610-17111629 | Msa0538000:CDS | 35.0% | |
| TACAAGTGGATGAGATTGTT+GGG | - | chr4_1:17111611-17111630 | Msa0538000:CDS | 35.0% | |
| CAACAAAAGTAAAGAAGGTG+GGG | + | chr4_1:17111729-17111748 | None:intergenic | 35.0% | |
| TTGTTACGGGATAAACCAAA+AGG | + | chr4_1:17111772-17111791 | None:intergenic | 35.0% | |
| ACTCGACATAAGAGTTGTTA+CGG | + | chr4_1:17111786-17111805 | None:intergenic | 35.0% | |
| !! | ACTCTTATGTCGAGTTTTGT+AGG | - | chr4_1:17111791-17111810 | Msa0538000:intron | 35.0% |
| TTGTAGGAGAGAGGTTAATA+TGG | - | chr4_1:17111807-17111826 | Msa0538000:intron | 35.0% | |
| GATTCGAGATACAAGTTCAT+GGG | + | chr4_1:17112047-17112066 | None:intergenic | 35.0% | |
| AGATTCGAGATACAAGTTCA+TGG | + | chr4_1:17112048-17112067 | None:intergenic | 35.0% | |
| ATGAACTTGTATCTCGAATC+TGG | - | chr4_1:17112047-17112066 | Msa0538000:intron | 35.0% | |
| ! | AAGGCGTTTAAGTAAGCAAA+AGG | + | chr4_1:17112110-17112129 | None:intergenic | 35.0% |
| CAAAAGGATGAGATCTTTAC+TGG | - | chr4_1:17112237-17112256 | Msa0538000:intron | 35.0% | |
| ACTGATCTAGTGTAAGGATA+TGG | + | chr4_1:17112356-17112375 | None:intergenic | 35.0% | |
| ACTTTGACTGATCTAGTGTA+AGG | + | chr4_1:17112362-17112381 | None:intergenic | 35.0% | |
| CTAGATCAGTCAAAGTTCAA+TGG | - | chr4_1:17112366-17112385 | Msa0538000:CDS | 35.0% | |
| ATCAGTCAAAGTTCAATGGA+GGG | - | chr4_1:17112370-17112389 | Msa0538000:CDS | 35.0% | |
| CTACATGGTTGAAGTAATCA+CGG | + | chr4_1:17112421-17112440 | None:intergenic | 35.0% | |
| TAATAACCTAACCAAGCAGA+TGG | + | chr4_1:17112491-17112510 | None:intergenic | 35.0% | |
| !! | TTTTGGCTAAAGCTCCAATT+TGG | - | chr4_1:17112580-17112599 | Msa0538000:intron | 35.0% |
| AAAAAGCAGAAGCTCCAAAT+TGG | + | chr4_1:17112597-17112616 | None:intergenic | 35.0% | |
| TCCAGATCATGTGATTATAG+AGG | - | chr4_1:17111244-17111263 | Msa0538000:three_prime_UTR | 35.0% | |
| ACCTCTATAATCACATGATC+TGG | + | chr4_1:17111248-17111267 | None:intergenic | 35.0% | |
| TAAGAACAGAAGTGAGTGAT+TGG | - | chr4_1:17111273-17111292 | Msa0538000:three_prime_UTR | 35.0% | |
| AAGAACAGAAGTGAGTGATT+GGG | - | chr4_1:17111274-17111293 | Msa0538000:three_prime_UTR | 35.0% | |
| GAAACATTCGGTTCAGAAAA+GGG | + | chr4_1:17111333-17111352 | None:intergenic | 35.0% | |
| AGAAACATTCGGTTCAGAAA+AGG | + | chr4_1:17111334-17111353 | None:intergenic | 35.0% | |
| ! | TTTTCTGAACCGAATGTTTC+TGG | - | chr4_1:17111333-17111352 | Msa0538000:three_prime_UTR | 35.0% |
| GTTTGAGAAAGATTGGTGAA+TGG | + | chr4_1:17111383-17111402 | None:intergenic | 35.0% | |
| TCACCAATCTTTCTCAAACT+TGG | - | chr4_1:17111384-17111403 | Msa0538000:three_prime_UTR | 35.0% | |
| ! | TTACAATCAGGATTCGAGTT+CGG | - | chr4_1:17111464-17111483 | Msa0538000:exon | 35.0% |
| TGATGATTTCAGAAGGTTCA+TGG | - | chr4_1:17111546-17111565 | Msa0538000:CDS | 35.0% | |
| TTCTGATCCTGATATACAAG+TGG | - | chr4_1:17111597-17111616 | Msa0538000:CDS | 35.0% | |
| ATCTCATCCACTTGTATATC+AGG | + | chr4_1:17111607-17111626 | None:intergenic | 35.0% | |
| ATACAAGTGGATGAGATTGT+TGG | - | chr4_1:17111610-17111629 | Msa0538000:CDS | 35.0% | |
| TACAAGTGGATGAGATTGTT+GGG | - | chr4_1:17111611-17111630 | Msa0538000:CDS | 35.0% | |
| CAACAAAAGTAAAGAAGGTG+GGG | + | chr4_1:17111729-17111748 | None:intergenic | 35.0% | |
| TTGTTACGGGATAAACCAAA+AGG | + | chr4_1:17111772-17111791 | None:intergenic | 35.0% | |
| ACTCGACATAAGAGTTGTTA+CGG | + | chr4_1:17111786-17111805 | None:intergenic | 35.0% | |
| !! | ACTCTTATGTCGAGTTTTGT+AGG | - | chr4_1:17111791-17111810 | Msa0538000:intron | 35.0% |
| TTGTAGGAGAGAGGTTAATA+TGG | - | chr4_1:17111807-17111826 | Msa0538000:intron | 35.0% | |
| GATTCGAGATACAAGTTCAT+GGG | + | chr4_1:17112047-17112066 | None:intergenic | 35.0% | |
| AGATTCGAGATACAAGTTCA+TGG | + | chr4_1:17112048-17112067 | None:intergenic | 35.0% | |
| ATGAACTTGTATCTCGAATC+TGG | - | chr4_1:17112047-17112066 | Msa0538000:intron | 35.0% | |
| ! | AAGGCGTTTAAGTAAGCAAA+AGG | + | chr4_1:17112110-17112129 | None:intergenic | 35.0% |
| CAAAAGGATGAGATCTTTAC+TGG | - | chr4_1:17112237-17112256 | Msa0538000:intron | 35.0% | |
| ACTGATCTAGTGTAAGGATA+TGG | + | chr4_1:17112356-17112375 | None:intergenic | 35.0% | |
| ACTTTGACTGATCTAGTGTA+AGG | + | chr4_1:17112362-17112381 | None:intergenic | 35.0% | |
| CTAGATCAGTCAAAGTTCAA+TGG | - | chr4_1:17112366-17112385 | Msa0538000:CDS | 35.0% | |
| ATCAGTCAAAGTTCAATGGA+GGG | - | chr4_1:17112370-17112389 | Msa0538000:CDS | 35.0% | |
| CTACATGGTTGAAGTAATCA+CGG | + | chr4_1:17112421-17112440 | None:intergenic | 35.0% | |
| TAATAACCTAACCAAGCAGA+TGG | + | chr4_1:17112491-17112510 | None:intergenic | 35.0% | |
| !! | TTTTGGCTAAAGCTCCAATT+TGG | - | chr4_1:17112580-17112599 | Msa0538000:intron | 35.0% |
| AAAAAGCAGAAGCTCCAAAT+TGG | + | chr4_1:17112597-17112616 | None:intergenic | 35.0% | |
| TATCATGTGTGAAGAAGCAG+TGG | - | chr4_1:17111303-17111322 | Msa0538000:three_prime_UTR | 40.0% | |
| ATCATGTGTGAAGAAGCAGT+GGG | - | chr4_1:17111304-17111323 | Msa0538000:three_prime_UTR | 40.0% | |
| AGGCCAAGTTTGAGAAAGAT+TGG | + | chr4_1:17111390-17111409 | None:intergenic | 40.0% | |
| AATCTTTCTCAAACTTGGCC+TGG | - | chr4_1:17111389-17111408 | Msa0538000:three_prime_UTR | 40.0% | |
| ATACTTCACGGAACCATGAT+TGG | - | chr4_1:17111694-17111713 | Msa0538000:intron | 40.0% | |
| CTCGACATAAGAGTTGTTAC+GGG | + | chr4_1:17111785-17111804 | None:intergenic | 40.0% | |
| GCAGATCAGTTTATTGCCAA+TGG | - | chr4_1:17112004-17112023 | Msa0538000:intron | 40.0% | |
| !! | GCTTGCTGTTCTTGACAATT+TGG | - | chr4_1:17112069-17112088 | Msa0538000:intron | 40.0% |
| TTACATCTCCTTCATGTGCA+AGG | + | chr4_1:17112129-17112148 | None:intergenic | 40.0% | |
| GATCAGTCAAAGTTCAATGG+AGG | - | chr4_1:17112369-17112388 | Msa0538000:CDS | 40.0% | |
| TGTTGGCATGTGCTAAAAGT+AGG | - | chr4_1:17112453-17112472 | Msa0538000:intron | 40.0% | |
| !! | TTTTCACGTTGGTTGTGCAT+TGG | - | chr4_1:17112613-17112632 | Msa0538000:intron | 40.0% |
| ! | TTTCACGTTGGTTGTGCATT+GGG | - | chr4_1:17112614-17112633 | Msa0538000:intron | 40.0% |
| CATTTAGTGTGTGTTTGGGA+AGG | + | chr4_1:17112684-17112703 | None:intergenic | 40.0% | |
| TATCATGTGTGAAGAAGCAG+TGG | - | chr4_1:17111303-17111322 | Msa0538000:three_prime_UTR | 40.0% | |
| ATCATGTGTGAAGAAGCAGT+GGG | - | chr4_1:17111304-17111323 | Msa0538000:three_prime_UTR | 40.0% | |
| AGGCCAAGTTTGAGAAAGAT+TGG | + | chr4_1:17111390-17111409 | None:intergenic | 40.0% | |
| AATCTTTCTCAAACTTGGCC+TGG | - | chr4_1:17111389-17111408 | Msa0538000:three_prime_UTR | 40.0% | |
| ATACTTCACGGAACCATGAT+TGG | - | chr4_1:17111694-17111713 | Msa0538000:intron | 40.0% | |
| CTCGACATAAGAGTTGTTAC+GGG | + | chr4_1:17111785-17111804 | None:intergenic | 40.0% | |
| GCAGATCAGTTTATTGCCAA+TGG | - | chr4_1:17112004-17112023 | Msa0538000:intron | 40.0% | |
| !! | GCTTGCTGTTCTTGACAATT+TGG | - | chr4_1:17112069-17112088 | Msa0538000:intron | 40.0% |
| TTACATCTCCTTCATGTGCA+AGG | + | chr4_1:17112129-17112148 | None:intergenic | 40.0% | |
| GATCAGTCAAAGTTCAATGG+AGG | - | chr4_1:17112369-17112388 | Msa0538000:CDS | 40.0% | |
| TGTTGGCATGTGCTAAAAGT+AGG | - | chr4_1:17112453-17112472 | Msa0538000:intron | 40.0% | |
| !! | TTTTCACGTTGGTTGTGCAT+TGG | - | chr4_1:17112613-17112632 | Msa0538000:intron | 40.0% |
| ! | TTTCACGTTGGTTGTGCATT+GGG | - | chr4_1:17112614-17112633 | Msa0538000:intron | 40.0% |
| CATTTAGTGTGTGTTTGGGA+AGG | + | chr4_1:17112684-17112703 | None:intergenic | 40.0% | |
| AGCAGCTTGCCAGAAACATT+CGG | + | chr4_1:17111345-17111364 | None:intergenic | 45.0% | |
| ! | ACTTACCTTCTGGCTAAACC+TGG | + | chr4_1:17111425-17111444 | None:intergenic | 45.0% |
| CTTTCCATTATGCCTCCTCA+TGG | - | chr4_1:17111667-17111686 | Msa0538000:intron | 45.0% | |
| ! | TGAAGTATTCCACCATGAGG+AGG | + | chr4_1:17111682-17111701 | None:intergenic | 45.0% |
| ! | CCTCATGGTGGAATACTTCA+CGG | - | chr4_1:17111682-17111701 | Msa0538000:intron | 45.0% |
| TCACGGAACCATGATTGGTA+TGG | - | chr4_1:17111699-17111718 | Msa0538000:intron | 45.0% | |
| !! | TGTCGAGTTTTGTAGGAGAG+AGG | - | chr4_1:17111798-17111817 | Msa0538000:intron | 45.0% |
| !! | TACGTCTCTTGACTTGCCAT+TGG | + | chr4_1:17112023-17112042 | None:intergenic | 45.0% |
| CTTAAACGCCTTGCACATGA+AGG | - | chr4_1:17112118-17112137 | Msa0538000:intron | 45.0% | |
| TTCAGCCAATACCATCTGCT+TGG | - | chr4_1:17112477-17112496 | Msa0538000:intron | 45.0% | |
| CCTAACCAAGCAGATGGTAT+TGG | + | chr4_1:17112485-17112504 | None:intergenic | 45.0% | |
| CCAATACCATCTGCTTGGTT+AGG | - | chr4_1:17112482-17112501 | Msa0538000:intron | 45.0% | |
| ! | TTGGAGCTTTAGCCAAAACG+TGG | + | chr4_1:17112578-17112597 | None:intergenic | 45.0% |
| !!! | GAGCTTCTGCTTTTTCACGT+TGG | - | chr4_1:17112602-17112621 | Msa0538000:intron | 45.0% |
| GGTAGCGTGAATTGTGCATT+GGG | - | chr4_1:17112635-17112654 | Msa0538000:intron | 45.0% | |
| GTGAATTGTGCATTGGGAAG+TGG | - | chr4_1:17112641-17112660 | Msa0538000:intron | 45.0% | |
| ! | TGTGTGTTTGGGAAGGCTTT+TGG | + | chr4_1:17112677-17112696 | None:intergenic | 45.0% |
| AGCAGCTTGCCAGAAACATT+CGG | + | chr4_1:17111345-17111364 | None:intergenic | 45.0% | |
| ! | ACTTACCTTCTGGCTAAACC+TGG | + | chr4_1:17111425-17111444 | None:intergenic | 45.0% |
| CTTTCCATTATGCCTCCTCA+TGG | - | chr4_1:17111667-17111686 | Msa0538000:intron | 45.0% | |
| ! | TGAAGTATTCCACCATGAGG+AGG | + | chr4_1:17111682-17111701 | None:intergenic | 45.0% |
| ! | CCTCATGGTGGAATACTTCA+CGG | - | chr4_1:17111682-17111701 | Msa0538000:intron | 45.0% |
| TCACGGAACCATGATTGGTA+TGG | - | chr4_1:17111699-17111718 | Msa0538000:intron | 45.0% | |
| !! | TGTCGAGTTTTGTAGGAGAG+AGG | - | chr4_1:17111798-17111817 | Msa0538000:intron | 45.0% |
| !! | TACGTCTCTTGACTTGCCAT+TGG | + | chr4_1:17112023-17112042 | None:intergenic | 45.0% |
| CTTAAACGCCTTGCACATGA+AGG | - | chr4_1:17112118-17112137 | Msa0538000:intron | 45.0% | |
| TTCAGCCAATACCATCTGCT+TGG | - | chr4_1:17112477-17112496 | Msa0538000:intron | 45.0% | |
| CCTAACCAAGCAGATGGTAT+TGG | + | chr4_1:17112485-17112504 | None:intergenic | 45.0% | |
| CCAATACCATCTGCTTGGTT+AGG | - | chr4_1:17112482-17112501 | Msa0538000:intron | 45.0% | |
| ! | TTGGAGCTTTAGCCAAAACG+TGG | + | chr4_1:17112578-17112597 | None:intergenic | 45.0% |
| !!! | GAGCTTCTGCTTTTTCACGT+TGG | - | chr4_1:17112602-17112621 | Msa0538000:intron | 45.0% |
| GGTAGCGTGAATTGTGCATT+GGG | - | chr4_1:17112635-17112654 | Msa0538000:intron | 45.0% | |
| GTGAATTGTGCATTGGGAAG+TGG | - | chr4_1:17112641-17112660 | Msa0538000:intron | 45.0% | |
| ! | TGTGTGTTTGGGAAGGCTTT+TGG | + | chr4_1:17112677-17112696 | None:intergenic | 45.0% |
| !! | AAATAATGATAAAAATATAT+AGG | + | chr4_1:17112205-17112224 | None:intergenic | 5.0% |
| !! | AAATAATGATAAAAATATAT+AGG | + | chr4_1:17112205-17112224 | None:intergenic | 5.0% |
| AAACCTGGTGGAATAGGTCC+AGG | + | chr4_1:17111410-17111429 | None:intergenic | 50.0% | |
| CTGGCTAAACCTGGTGGAAT+AGG | + | chr4_1:17111416-17111435 | None:intergenic | 50.0% | |
| TTCCACCAGGTTTAGCCAGA+AGG | - | chr4_1:17111417-17111436 | Msa0538000:three_prime_UTR | 50.0% | |
| ! | TACCTTCTGGCTAAACCTGG+TGG | + | chr4_1:17111422-17111441 | None:intergenic | 50.0% |
| TCCATTATGCCTCCTCATGG+TGG | - | chr4_1:17111670-17111689 | Msa0538000:intron | 50.0% | |
| ! | TCCACCATGAGGAGGCATAA+TGG | + | chr4_1:17111674-17111693 | None:intergenic | 50.0% |
| ! | CCGTGAAGTATTCCACCATG+AGG | + | chr4_1:17111685-17111704 | None:intergenic | 50.0% |
| GGTCGCCCATAATCTAGCAA+AGG | - | chr4_1:17111828-17111847 | Msa0538000:intron | 50.0% | |
| CGCCCATAATCTAGCAAAGG+CGG | - | chr4_1:17111831-17111850 | Msa0538000:intron | 50.0% | |
| GGCCGCCTTTGCTAGATTAT+GGG | + | chr4_1:17111836-17111855 | None:intergenic | 50.0% | |
| TGGCCGCCTTTGCTAGATTA+TGG | + | chr4_1:17111837-17111856 | None:intergenic | 50.0% | |
| GGGTAGCGTGAATTGTGCAT+TGG | - | chr4_1:17112634-17112653 | Msa0538000:intron | 50.0% | |
| AAACCTGGTGGAATAGGTCC+AGG | + | chr4_1:17111410-17111429 | None:intergenic | 50.0% | |
| CTGGCTAAACCTGGTGGAAT+AGG | + | chr4_1:17111416-17111435 | None:intergenic | 50.0% | |
| TTCCACCAGGTTTAGCCAGA+AGG | - | chr4_1:17111417-17111436 | Msa0538000:three_prime_UTR | 50.0% | |
| ! | TACCTTCTGGCTAAACCTGG+TGG | + | chr4_1:17111422-17111441 | None:intergenic | 50.0% |
| TCCATTATGCCTCCTCATGG+TGG | - | chr4_1:17111670-17111689 | Msa0538000:intron | 50.0% | |
| ! | TCCACCATGAGGAGGCATAA+TGG | + | chr4_1:17111674-17111693 | None:intergenic | 50.0% |
| ! | CCGTGAAGTATTCCACCATG+AGG | + | chr4_1:17111685-17111704 | None:intergenic | 50.0% |
| GGTCGCCCATAATCTAGCAA+AGG | - | chr4_1:17111828-17111847 | Msa0538000:intron | 50.0% | |
| CGCCCATAATCTAGCAAAGG+CGG | - | chr4_1:17111831-17111850 | Msa0538000:intron | 50.0% | |
| GGCCGCCTTTGCTAGATTAT+GGG | + | chr4_1:17111836-17111855 | None:intergenic | 50.0% | |
| TGGCCGCCTTTGCTAGATTA+TGG | + | chr4_1:17111837-17111856 | None:intergenic | 50.0% | |
| GGGTAGCGTGAATTGTGCAT+TGG | - | chr4_1:17112634-17112653 | Msa0538000:intron | 50.0% | |
| GGGGCATGCCATACCAATCA+TGG | + | chr4_1:17111710-17111729 | None:intergenic | 55.0% | |
| GGGGCATGCCATACCAATCA+TGG | + | chr4_1:17111710-17111729 | None:intergenic | 55.0% | |
| TGGCCTGGACCTATTCCACC+AGG | - | chr4_1:17111404-17111423 | Msa0538000:three_prime_UTR | 60.0% | |
| TGGCCTGGACCTATTCCACC+AGG | - | chr4_1:17111404-17111423 | Msa0538000:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17111200 | 17112786 | 17111200 | ID=Msa0538000;Name=Msa0538000 |
| chr4_1 | mRNA | 17111200 | 17112786 | 17111200 | ID=Msa0538000-mRNA-1;Parent=Msa0538000;Name=Msa0538000-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.66|0.75|1|0.66|0.75|4|275|195 |
| chr4_1 | exon | 17111200 | 17111645 | 17111200 | ID=Msa0538000-mRNA-1:exon:5125;Parent=Msa0538000-mRNA-1 |
| chr4_1 | exon | 17111842 | 17111978 | 17111842 | ID=Msa0538000-mRNA-1:exon:5124;Parent=Msa0538000-mRNA-1 |
| chr4_1 | exon | 17112271 | 17112428 | 17112271 | ID=Msa0538000-mRNA-1:exon:5123;Parent=Msa0538000-mRNA-1 |
| chr4_1 | exon | 17112665 | 17112786 | 17112665 | ID=Msa0538000-mRNA-1:exon:5122;Parent=Msa0538000-mRNA-1 |
| chr4_1 | CDS | 17112665 | 17112786 | 17112665 | ID=Msa0538000-mRNA-1:cds;Parent=Msa0538000-mRNA-1 |
| chr4_1 | CDS | 17112271 | 17112428 | 17112271 | ID=Msa0538000-mRNA-1:cds;Parent=Msa0538000-mRNA-1 |
| chr4_1 | CDS | 17111842 | 17111978 | 17111842 | ID=Msa0538000-mRNA-1:cds;Parent=Msa0538000-mRNA-1 |
| chr4_1 | CDS | 17111475 | 17111645 | 17111475 | ID=Msa0538000-mRNA-1:cds;Parent=Msa0538000-mRNA-1 |
| chr4_1 | three_prime_UTR | 17111200 | 17111474 | 17111200 | ID=Msa0538000-mRNA-1:three_prime_utr;Parent=Msa0538000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
