AlfalfaGEDB | Msa0094970

M. sativa cultivar zhongmu-4 / Msa0094970

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094970	XP_024637536.1	97.863	234	5	0	1	234	1	234	7.76e-172	482

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094970	A0A072UFR3	97.436	234	5	1	1	234	1	233	1.27e-169	476

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005160	Msa0094970	0.801893	7.262343e-49	-8.615850e-47
Msa0006050	Msa0094970	0.834039	3.773494e-56	-8.615850e-47
Msa0012460	Msa0094970	0.813870	2.056340e-51	-8.615850e-47
Msa0017130	Msa0094970	0.801223	9.966750e-49	-8.615850e-47
Msa0017980	Msa0094970	0.809382	1.944820e-50	-8.615850e-47
Msa0018870	Msa0094970	0.800117	1.675461e-48	-8.615850e-47
Msa0021710	Msa0094970	0.810231	1.277298e-50	-8.615850e-47
Msa0030740	Msa0094970	0.805568	1.253562e-49	-8.615850e-47
Msa0032450	Msa0094970	0.809555	1.785831e-50	-8.615850e-47
Msa0033930	Msa0094970	0.817725	2.841064e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094970	MtrunA17_Chr4g0000291	97.436	234	5	1	1	234	1	233	2.44e-173	476
Msa0094970	MtrunA17_Chr4g0000311	88.043	92	11	0	1	92	1	92	3.16e-57	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094970	AT3G20270.1	54.884	215	94	3	14	228	21	232	1.85e-84	266
Msa0094970	AT3G20270.3	54.884	215	94	3	14	228	21	232	1.85e-84	266

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Find 81 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGTGGAATAGGTCC+AGG	0.554978	1_2:+78403128	None:intergenic
AACACACACTTAATATGCTT+TGG	0.328513	1_2:+78402009	None:intergenic
AAGAACAGAAGTGAGTGATT+GGG	0.550455	1_2:-78403261	Msa0094970:CDS
AAGGCGTTTAAGTAAGCAAA+AGG	0.541095	1_2:+78402428	None:intergenic
AATCCTTCTCAAACTTGGCC+TGG	0.475632	1_2:-78403146	Msa0094970:CDS
AATGAAGAGAAATTGGAGGT+TGG	0.520172	1_2:+78403409	None:intergenic
ACATATCATAATAATCTACA+TGG	0.601342	1_2:+78402102	None:intergenic
ACCTCTATAATCACATGATC+TGG	0.411609	1_2:+78403290	None:intergenic
ACTAATAGAAGAAATCTGTA+TGG	0.499181	1_2:-78403354	Msa0094970:exon
ACTGATCTAGTGTAAGGATA+TGG	0.366614	1_2:+78402182	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGGATGAAAATATGAGAA+TGG	+	chr1_2:78401933-78401952	None:intergenic	30.0%
ATAGAATGAAGAGAAATTGG+AGG	+	chr1_2:78401955-78401974	None:intergenic	30.0%
GATCAAAGATTGTTACAATC+AGG	-	chr1_2:78402274-78402293	Msa0094970:intron	30.0%
ACAACAAAAGTAAAGAAGGT+GGG	+	chr1_2:78402552-78402571	None:intergenic	30.0%
AACAACAAAAGTAAAGAAGG+TGG	+	chr1_2:78402553-78402572	None:intergenic	30.0%
AGGATCAATTCAGTTTGATA+TGG	+	chr1_2:78402679-78402698	None:intergenic	30.0%
TTGGTTTATCTTGTTCTTGT+TGG	-	chr1_2:78402732-78402751	Msa0094970:intron	30.0%
AAAGAGACAAAATGTTGATG+AGG	+	chr1_2:78403111-78403130	None:intergenic	30.0%
AACACACACTTAATATGCTT+TGG	+	chr1_2:78403351-78403370	None:intergenic	30.0%
TGTACATTTAGTGTGTGTTT+GGG	+	chr1_2:78403509-78403528	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	78401777	78403602	78401777	ID=Msa0094970;Name=Msa0094970
chr1_2	mRNA	78401777	78403602	78401777	ID=Msa0094970-mRNA-1;Parent=Msa0094970;Name=Msa0094970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=245\|1\|1\|1\|1\|1\|4\|269\|234
chr1_2	exon	78401777	78402216	78401777	ID=Msa0094970-mRNA-1:exon:27992;Parent=Msa0094970-mRNA-1
chr1_2	exon	78402413	78402549	78402413	ID=Msa0094970-mRNA-1:exon:27991;Parent=Msa0094970-mRNA-1
chr1_2	exon	78402842	78402999	78402842	ID=Msa0094970-mRNA-1:exon:27990;Parent=Msa0094970-mRNA-1
chr1_2	exon	78403119	78403602	78403119	ID=Msa0094970-mRNA-1:exon:27989;Parent=Msa0094970-mRNA-1
chr1_2	five_prime_UTR	78403358	78403602	78403358	ID=Msa0094970-mRNA-1:five_prime_utr;Parent=Msa0094970-mRNA-1
chr1_2	CDS	78403119	78403357	78403119	ID=Msa0094970-mRNA-1:cds;Parent=Msa0094970-mRNA-1
chr1_2	CDS	78402842	78402999	78402842	ID=Msa0094970-mRNA-1:cds;Parent=Msa0094970-mRNA-1
chr1_2	CDS	78402413	78402549	78402413	ID=Msa0094970-mRNA-1:cds;Parent=Msa0094970-mRNA-1
chr1_2	CDS	78402046	78402216	78402046	ID=Msa0094970-mRNA-1:cds;Parent=Msa0094970-mRNA-1
chr1_2	three_prime_UTR	78401777	78402045	78401777	ID=Msa0094970-mRNA-1:three_prime_utr;Parent=Msa0094970-mRNA-1

Gene Sequence

>Msa0094970

ATGGAGAGTAAAAATTCAAAAGAGATAATTGATATAGAGAAACTTCCAGATCATGTGATTATAGAGGTATTCATAAGAACAGAAGTGAGTGATTGGGCACAAATATCATGTGTGAAGAAGCAGTGGGCTTCCCTTTTCCGAACCGAATGTTTCTGGCAAGCTGCTCTTTCTCACATCTATCCATTCACCAATCCTTCTCAAACTTGGCCTGGACCTATTCCACCAGGTTTAGCCAGAAGAAGGTTCATGGCCTTACATATAAGTCAACAAATATTTGCTTCTGATCCTGATATACAAGTGGATGAGATTGTTGGGCATAGTTATCTGTTTTTGAAAGAGCAGCTTCAACTTTCCATTATGCCTCCTCATGGTGGAATACTTCACGGAACCATGATTGATCAGTTTATTGCCAATGGCAAGTCAAGAGACGTAGCCCATGAACTTGTATCTCGAATCTGGCTTGCTGTTCTTGACAATTTGGAAGAAAATCAGCATACCTTTTGCTTACTTAAACGCCTTGCACATGAAGGAGATCAGGTTTTTCTTCCATATCCTTACACTAGATCAGTCAAAGTTCAATGGAGGGTGTTTGAGAAGCTTTTTACTGATTTCCGTGATTGCTTCAACCATGTAGATTATTATGATATGTTGGCATGTGCTAAAAGTAGGTTTCAGCCAATACCATCTGCTTGGTTAGGTTATTAG

Protein sequence

>Msa0094970

MESKNSKEIIDIEKLPDHVIIEVFIRTEVSDWAQISCVKKQWASLFRTECFWQAALSHIYPFTNPSQTWPGPIPPGLARRRFMALHISQQIFASDPDIQVDEIVGHSYLFLKEQLQLSIMPPHGGILHGTMIDQFIANGKSRDVAHELVSRIWLAVLDNLEENQHTFCLLKRLAHEGDQVFLPYPYTRSVKVQWRVFEKLFTDFRDCFNHVDYYDMLACAKSRFQPIPSAWLGY*