AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792840 MtrunA17_Chr7g0236891 96.512 172 5 1 1 172 1 171 7.22e-121 338
Msa0792840 MtrunA17_Chr3g0094861 43.902 164 86 1 9 172 161 318 2.73e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792840 AT3G17609.2 60.000 130 47 2 40 168 22 147 7.93e-44 142
Msa0792840 AT3G17609.3 61.157 121 42 2 49 168 2 118 4.99e-41 134
Msa0792840 AT3G17609.1 74.444 90 22 1 80 168 44 133 6.16e-40 132
Msa0792840 AT3G17609.4 74.444 90 22 1 80 168 43 132 6.45e-40 132
Msa0792840 AT5G11260.1 48.175 137 54 3 32 162 26 151 9.02e-33 115
Msa0792840 AT5G11260.2 48.120 133 52 3 32 158 26 147 3.79e-30 108

Find 69 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGTGTAATTGATTA+AGG 0.121343 5_3:-4612519 Msa0792840:three_prime_UTR
ATATAAGGTTCTTCTAAATT+AGG 0.169445 5_3:-4612679 Msa0792840:three_prime_UTR
TGAGATACGTTCTTCTAAAT+TGG 0.194375 5_3:+4612908 None:intergenic
CTTCATCTTCATCTTCTTCA+TGG 0.209387 5_3:-4616461 Msa0792840:CDS
TCTTCCACGGCGGCGCTTGC+CGG 0.245919 5_3:+4613434 None:intergenic
CTTCCACGGCGGCGCTTGCC+GGG 0.275869 5_3:+4613435 None:intergenic
CAAATAGGTTGCTAAGGAAT+AGG 0.306771 5_3:-4613016 Msa0792840:intron
CTTCATCTTCTTCATGGAAT+AGG 0.316122 5_3:-4616455 Msa0792840:CDS
TCATTGCTCTCATCAACTTT+GGG 0.320674 5_3:+4612715 None:intergenic
TTCATTGCTCTCATCAACTT+TGG 0.343653 5_3:+4612714 None:intergenic
TATAAGGTTCTTCTAAATTA+GGG 0.349631 5_3:-4612678 Msa0792840:three_prime_UTR
GATGGGGCCTAAAAGAGTTT+TGG 0.353153 5_3:+4616685 None:intergenic
TAAATTGTGTAATTGATTAA+GGG 0.359378 5_3:-4612518 Msa0792840:three_prime_UTR
GAAGGTTAGACAGGGATATA+AGG 0.362469 5_3:-4612694 Msa0792840:exon
TACTGGTGTTCATAATGAAT+TGG 0.363579 5_3:+4612582 None:intergenic
CATTGTGTACCTTCCACATC+TGG 0.376399 5_3:+4613543 None:intergenic
CTTCTAAATTAGGGCATTGT+GGG 0.383047 5_3:-4612669 Msa0792840:three_prime_UTR
TTCCTTCATCTCAGTATCAT+TGG 0.395557 5_3:+4616506 None:intergenic
TGATTAAGGGTTGTGTTAAC+CGG 0.397964 5_3:-4612505 Msa0792840:three_prime_UTR
TCGGAGCATGGCGTTCTCAT+TGG 0.400151 5_3:+4612878 None:intergenic
GTTGTGTTAACCGGTGCTCC+CGG 0.404620 5_3:-4612496 Msa0792840:three_prime_UTR
TTTGATTTGTTAACTCAGAA+TGG 0.409238 5_3:+4613511 None:intergenic
CGTCTATGTTCCTTGTCTGC+AGG 0.409298 5_3:+4613408 None:intergenic
CCTATGCCTCCACATAGATT+TGG 0.415132 5_3:-4616426 Msa0792840:intron
AAATAGGTTGCTAAGGAATA+GGG 0.428080 5_3:-4613015 Msa0792840:intron
TTGTGTTAACCGGTGCTCCC+GGG 0.453179 5_3:-4612495 Msa0792840:three_prime_UTR
GAGAGCAATGAAGGTTAGAC+AGG 0.455193 5_3:-4612703 Msa0792840:exon
ATGAAGGAAGCTGCAACAAC+AGG 0.468007 5_3:-4616492 Msa0792840:CDS
TAAAACACAGAAGAAAGGTT+TGG 0.470706 5_3:-4616739 Msa0792840:five_prime_UTR
CAACTTCAAGCAGGCTTCCC+CGG 0.470731 5_3:-4613453 Msa0792840:CDS
GTCTATGTTCCTTGTCTGCA+GGG 0.478530 5_3:+4613409 None:intergenic
CGGTTACATTGCTTTGATTG+TGG 0.481791 5_3:+4613481 None:intergenic
GTTAATGCACTTGCAATGTT+GGG 0.495633 5_3:+4616617 None:intergenic
AGCCAATGATACTGAGATGA+AGG 0.496590 5_3:-4616508 Msa0792840:CDS
TGTCTGCAGGGTTTCTTCCA+CGG 0.500164 5_3:+4613421 None:intergenic
AAAGTTGATGAGAGCAATGA+AGG 0.515891 5_3:-4612712 Msa0792840:CDS
TTATGTTACCTTTCGGAGCA+TGG 0.517776 5_3:+4612866 None:intergenic
TCTTCTAAATTAGGGCATTG+TGG 0.522870 5_3:-4612670 Msa0792840:three_prime_UTR
TTCCACGGCGGCGCTTGCCG+GGG 0.522944 5_3:+4613436 None:intergenic
ATTGTCTTTGAAAGAGTGAT+GGG 0.523947 5_3:+4616668 None:intergenic
CCAAATCTATGTGGAGGCAT+AGG 0.526031 5_3:+4616426 None:intergenic
AATCAGTGCCCCGGGAGCAC+CGG 0.530351 5_3:+4612486 None:intergenic
AGATACTTTAATCAGTGCCC+CGG 0.532832 5_3:+4612477 None:intergenic
TGTTAATGCACTTGCAATGT+TGG 0.535125 5_3:+4616616 None:intergenic
AGGAACATAGACGTCTCAAA+AGG 0.535376 5_3:-4613398 Msa0792840:intron
CATTGTCTTTGAAAGAGTGA+TGG 0.546775 5_3:+4616667 None:intergenic
CATGAAGAAGATGAAGATGA+AGG 0.548208 5_3:+4616462 None:intergenic
TGGAAGAAACCCTGCAGACA+AGG 0.552255 5_3:-4613418 Msa0792840:CDS
TTGGTTACTTGAAATTTCTG+AGG 0.554202 5_3:-4616578 Msa0792840:five_prime_UTR
TGTGTTAACCGGTGCTCCCG+GGG 0.554531 5_3:-4612494 Msa0792840:three_prime_UTR
ACCGATGCTCAACTTCAAGC+AGG 0.560214 5_3:-4613462 Msa0792840:CDS
ACACGTAAAACACAGAAGAA+AGG 0.569598 5_3:-4616744 Msa0792840:five_prime_UTR
GTTGCTAAGGAATAGGGTCT+CGG 0.571634 5_3:-4613009 Msa0792840:CDS
AATCTATGTGGAGGCATAGG+AGG 0.581180 5_3:+4616429 None:intergenic
GTGTTACAAATAGGTTGCTA+AGG 0.586266 5_3:-4613022 Msa0792840:intron
GATACTTTAATCAGTGCCCC+GGG 0.587543 5_3:+4612478 None:intergenic
GCCTGCTTGAAGTTGAGCAT+CGG 0.588947 5_3:+4613461 None:intergenic
TTCCCCGGCAAGCGCCGCCG+TGG 0.608180 5_3:-4613438 Msa0792840:CDS
TGAGAACGCCATGCTCCGAA+AGG 0.615500 5_3:-4612874 Msa0792840:intron
AAGGAAGCTGCAACAACAGG+AGG 0.617328 5_3:-4616489 Msa0792840:CDS
TTCTAAATTAGGGCATTGTG+GGG 0.623760 5_3:-4612668 Msa0792840:three_prime_UTR
CACTTACCAAATCTATGTGG+AGG 0.634191 5_3:+4616420 None:intergenic
TCTGTTCGAAGTTCCAGATG+TGG 0.639704 5_3:-4613556 Msa0792840:CDS
TGACACTTACCAAATCTATG+TGG 0.640404 5_3:+4616417 None:intergenic
CTGCAGGGTTTCTTCCACGG+CGG 0.647406 5_3:+4613424 None:intergenic
TTCGAAGTTCCAGATGTGGA+AGG 0.651950 5_3:-4613552 Msa0792840:CDS
ATAATAGTGGTACACATGTG+AGG 0.674412 5_3:+4612633 None:intergenic
TTGTCTTTGAAAGAGTGATG+GGG 0.687323 5_3:+4616669 None:intergenic
AGAGCAATGAAGGTTAGACA+GGG 0.702347 5_3:-4612702 Msa0792840:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAAAATAAAAAAT+AGG + chr5_3:4613801-4613820 None:intergenic 0.0%
!!! ATATTTAAAATTTAAAAATT+TGG - chr5_3:4614318-4614337 Msa0792840:intron 0.0%
!! AATTAAAAAAAATAAAAAAT+AGG - chr5_3:4615176-4615195 Msa0792840:intron 0.0%
!! TTGTTAAATAAAAATTTAAC+GGG + chr5_3:4613177-4613196 None:intergenic 10.0%
!!! AAATTCAAAATATTGTTTTT+AGG - chr5_3:4613557-4613576 Msa0792840:CDS 10.0%
!!! TTTTTTCAAAACAAAAAAAA+TGG + chr5_3:4615138-4615157 None:intergenic 10.0%
!! TGAAAAAAATTTAAAAAAAG+AGG - chr5_3:4613853-4613872 Msa0792840:intron 10.0%
!! GAAAAAAATTTAAAAAAAGA+GGG - chr5_3:4613854-4613873 Msa0792840:intron 10.0%
!! ATTAAAATAATTTAATGATG+TGG + chr5_3:4614005-4614024 None:intergenic 10.0%
!! TAAAAAATTAGAAAAAAGTT+CGG - chr5_3:4614195-4614214 Msa0792840:intron 10.0%
!!! TTTAATTTTCATATTGTAAT+TGG - chr5_3:4614632-4614651 Msa0792840:intron 10.0%
!!! TTAGAAGATATTTAAAATAA+TGG + chr5_3:4614756-4614775 None:intergenic 10.0%
!! TTTGAAAAAATTAAAAAAGA+GGG + chr5_3:4615128-4615147 None:intergenic 10.0%
!!! TTTTGAAAAAATTAAAAAAG+AGG + chr5_3:4615129-4615148 None:intergenic 10.0%
!!! TTTTTCAAAACAAAAAAAAA+TGG - chr5_3:4615139-4615158 Msa0792840:intron 10.0%
!! ATTATAATTGTAATATGTAT+CGG + chr5_3:4615987-4616006 None:intergenic 10.0%
!! AAGAATATTAAGTATATTGT+TGG - chr5_3:4613027-4613046 Msa0792840:intron 15.0%
!! GGTATATATATAATATAAGT+TGG - chr5_3:4613091-4613110 Msa0792840:intron 15.0%
!! TAGAAGATATTTAAAAATAC+TGG - chr5_3:4614234-4614253 Msa0792840:intron 15.0%
!!! TTTAATTTTTCGATTGTAAT+TGG + chr5_3:4614363-4614382 None:intergenic 15.0%
!! TTAAAAAACTAGAAAAAGTT+CGG + chr5_3:4614793-4614812 None:intergenic 15.0%
!! ATTAAAATGATTTAATGATG+TGG - chr5_3:4614974-4614993 Msa0792840:intron 15.0%
!! CTGAAAAAATTTAAAAAAGT+TGG + chr5_3:4615070-4615089 None:intergenic 15.0%
!! ATGTCAAATTAAAATTTGAA+GGG + chr5_3:4615492-4615511 None:intergenic 15.0%
!! AATGTCAAATTAAAATTTGA+AGG + chr5_3:4615493-4615512 None:intergenic 15.0%
!! TTAAATTGTGTAATTGATTA+AGG - chr5_3:4616667-4616686 Msa0792840:five_prime_UTR 15.0%
!! TAAATTGTGTAATTGATTAA+GGG - chr5_3:4616668-4616687 Msa0792840:five_prime_UTR 15.0%
!!! ACAAGTTGTTTTTAAATGAT+CGG + chr5_3:4613056-4613075 None:intergenic 20.0%
!! TCAAATTGTTGATGTAAAAA+CGG + chr5_3:4613252-4613271 None:intergenic 20.0%
!! TCAAAATTTGCATTGAATTT+CGG - chr5_3:4613399-4613418 Msa0792840:CDS 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG + chr5_3:4615345-4615364 None:intergenic 20.0%
!!! TTTTTGCGAAATAAAAAAAC+TGG - chr5_3:4614292-4614311 Msa0792840:intron 20.0%
!!! AATTTTAGTTCAAAAGAGAT+TGG + chr5_3:4614577-4614596 None:intergenic 20.0%
!!! AATAGGCTTAATATTACTTT+TGG - chr5_3:4615193-4615212 Msa0792840:intron 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG - chr5_3:4615345-4615364 Msa0792840:intron 20.0%
!!! ATTTTGCATTGATAAAAACA+AGG + chr5_3:4615421-4615440 None:intergenic 20.0%
!! AATGCAAAATTGTTACTATT+AGG - chr5_3:4615431-4615450 Msa0792840:intron 20.0%
!!! TAATATGGACTAAATTGAAT+TGG + chr5_3:4615521-4615540 None:intergenic 20.0%
!! ATATAAGGTTCTTCTAAATT+AGG - chr5_3:4616507-4616526 Msa0792840:CDS 20.0%
!! TATAAGGTTCTTCTAAATTA+GGG - chr5_3:4616508-4616527 Msa0792840:CDS 20.0%
!!! TTTTTGGGAAATAAAAATAC+TGG + chr5_3:4616624-4616643 None:intergenic 20.0%
!!! ATGTAAACTATCAGTTTTTT+GGG + chr5_3:4616639-4616658 None:intergenic 20.0%
!!! AATGTAAACTATCAGTTTTT+TGG + chr5_3:4616640-4616659 None:intergenic 20.0%
!!! CTGATTAAAGTATCTAAAAA+AGG - chr5_3:4616717-4616736 Msa0792840:five_prime_UTR 20.0%
!! CATATTTTATCCTCAAGTTA+AGG - chr5_3:4612841-4612860 Msa0792840:intron 25.0%
!! AAATAAAAGACCTTAACTTG+AGG + chr5_3:4612854-4612873 None:intergenic 25.0%
! TATGAAGAATCTTGTAAGTT+TGG + chr5_3:4612953-4612972 None:intergenic 25.0%
! ACTTGTTTCATGAAAAGTAA+AGG - chr5_3:4613070-4613089 Msa0792840:intron 25.0%
!!! ATATAAGTTGGTCCATATTA+AGG - chr5_3:4613103-4613122 Msa0792840:intron 25.0%
!!! TATAAGTTGGTCCATATTAA+GGG - chr5_3:4613104-4613123 Msa0792840:intron 25.0%
! TATGCGTGTGTATATTATAA+GGG + chr5_3:4613131-4613150 None:intergenic 25.0%
! ATATGCGTGTGTATATTATA+AGG + chr5_3:4613132-4613151 None:intergenic 25.0%
! TACACACGCATATATTAAAT+TGG - chr5_3:4613139-4613158 Msa0792840:intron 25.0%
! AACTTTGTGATATGATATTG+TGG + chr5_3:4613296-4613315 None:intergenic 25.0%
! AACTACAGACAATTCAAATT+TGG - chr5_3:4613475-4613494 Msa0792840:CDS 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG + chr5_3:4615346-4615365 None:intergenic 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG + chr5_3:4615344-4615363 None:intergenic 25.0%
! TAAGAACGAAAACAAAAATC+TGG - chr5_3:4613943-4613962 Msa0792840:intron 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG - chr5_3:4615344-4615363 Msa0792840:intron 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG - chr5_3:4615346-4615365 Msa0792840:intron 25.0%
! AAAACAAGTCACGTTTAATA+TGG + chr5_3:4615536-4615555 None:intergenic 25.0%
!!! TTTGATTTGTTAACTCAGAA+TGG + chr5_3:4615678-4615697 None:intergenic 25.0%
! AATAGTGACTATAGAATGTA+AGG + chr5_3:4615848-4615867 None:intergenic 25.0%
! ATAACATCATGTTGATCAAA+TGG - chr5_3:4616401-4616420 Msa0792840:intron 25.0%
! TCAAATGGAAATTTATTCGA+TGG - chr5_3:4616416-4616435 Msa0792840:intron 25.0%
TAAAACACAGAAGAAAGGTT+TGG - chr5_3:4612447-4612466 Msa0792840:three_prime_UTR 30.0%
! TTCTGAACCAAAACTCTTTT+AGG - chr5_3:4612494-4612513 Msa0792840:three_prime_UTR 30.0%
! ATTGTCTTTGAAAGAGTGAT+GGG + chr5_3:4612521-4612540 None:intergenic 30.0%
! AACACGTTACACATTTTTCT+TGG - chr5_3:4612589-4612608 Msa0792840:three_prime_UTR 30.0%
TTGGTTACTTGAAATTTCTG+AGG - chr5_3:4612608-4612627 Msa0792840:three_prime_UTR 30.0%
AATCTTGTAAGTTTGGACTT+TGG + chr5_3:4612946-4612965 None:intergenic 30.0%
!! ATAAGTTGGTCCATATTAAG+GGG - chr5_3:4613105-4613124 Msa0792840:intron 30.0%
ATGATTATCGATCATTGTGA+AGG + chr5_3:4613325-4613344 None:intergenic 30.0%
ACATTAACATGTGCTAACAT+TGG + chr5_3:4613501-4613520 None:intergenic 30.0%
! TTTAGGCTTAATAGCACTTT+TGG - chr5_3:4613574-4613593 Msa0792840:CDS 30.0%
! TCGCAATTTTTGCAAACATA+GGG + chr5_3:4613601-4613620 None:intergenic 30.0%
! ATCGCAATTTTTGCAAACAT+AGG + chr5_3:4613602-4613621 None:intergenic 30.0%
GTTTGCAAAAATTGCGATTA+AGG - chr5_3:4613604-4613623 Msa0792840:intron 30.0%
! TTGTAGTTTTCAAAGATAGG+GGG + chr5_3:4615347-4615366 None:intergenic 30.0%
! AATAGGCTTAATAGCACTTT+TGG + chr5_3:4613784-4613803 None:intergenic 30.0%
TTTCTCGCGAAATAAAAAAC+TGG + chr5_3:4614703-4614722 None:intergenic 30.0%
! TTGTAGTTTTCAAAGATAGG+GGG - chr5_3:4615347-4615366 Msa0792840:intron 30.0%
GTTTGCAAATATTGCGATTA+AGG + chr5_3:4615373-4615392 None:intergenic 30.0%
ATCGCAATATTTGCAAACAT+AGG - chr5_3:4615375-4615394 Msa0792840:intron 30.0%
TCGCAATATTTGCAAACATA+GGG - chr5_3:4615376-4615395 Msa0792840:intron 30.0%
AGTCTGACTTTACTTATCTT+TGG - chr5_3:4616099-4616118 Msa0792840:intron 30.0%
GTCTGACTTTACTTATCTTT+GGG - chr5_3:4616100-4616119 Msa0792840:intron 30.0%
AAATGACGTGTGTTACAAAT+AGG - chr5_3:4616155-4616174 Msa0792840:intron 30.0%
AAATAGGTTGCTAAGGAATA+GGG - chr5_3:4616171-4616190 Msa0792840:intron 30.0%
!!! GTACACTTTTTTTCTTTCAC+GGG + chr5_3:4616212-4616231 None:intergenic 30.0%
!!! CGTACACTTTTTTTCTTTCA+CGG + chr5_3:4616213-4616232 None:intergenic 30.0%
TGAGATACGTTCTTCTAAAT+TGG + chr5_3:4616281-4616300 None:intergenic 30.0%
GTTCAGATTATGTTACCTTT+CGG + chr5_3:4616330-4616349 None:intergenic 30.0%
TACTGGTGTTCATAATGAAT+TGG + chr5_3:4616607-4616626 None:intergenic 30.0%
ACACGTAAAACACAGAAGAA+AGG - chr5_3:4612442-4612461 Msa0792840:three_prime_UTR 35.0%
! TTGTCTTTGAAAGAGTGATG+GGG + chr5_3:4612520-4612539 None:intergenic 35.0%
! CATTGTCTTTGAAAGAGTGA+TGG + chr5_3:4612522-4612541 None:intergenic 35.0%
GTTAATGCACTTGCAATGTT+GGG + chr5_3:4612572-4612591 None:intergenic 35.0%
TGTTAATGCACTTGCAATGT+TGG + chr5_3:4612573-4612592 None:intergenic 35.0%
TTCCTTCATCTCAGTATCAT+TGG + chr5_3:4612683-4612702 None:intergenic 35.0%
CATGAAGAAGATGAAGATGA+AGG + chr5_3:4612727-4612746 None:intergenic 35.0%
CTTCATCTTCATCTTCTTCA+TGG - chr5_3:4612725-4612744 Msa0792840:CDS 35.0%
CTTCATCTTCTTCATGGAAT+AGG - chr5_3:4612731-4612750 Msa0792840:CDS 35.0%
TGACACTTACCAAATCTATG+TGG + chr5_3:4612772-4612791 None:intergenic 35.0%
TATTGATAGGCTCTTGACTT+AGG + chr5_3:4612897-4612916 None:intergenic 35.0%
ATTATAAGGGCCCCTTAATA+TGG + chr5_3:4613118-4613137 None:intergenic 35.0%
ATTATCGATCATTGTGAAGG+TGG + chr5_3:4613322-4613341 None:intergenic 35.0%
! CGCAATTTTTGCAAACATAG+GGG + chr5_3:4613600-4613619 None:intergenic 35.0%
CAACGAAAACGAAACATAAG+GGG + chr5_3:4615319-4615338 None:intergenic 35.0%
GCAACGAAAACGAAACATAA+GGG + chr5_3:4615318-4615337 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG + chr5_3:4615317-4615336 None:intergenic 35.0%
! TTATGTTTCGTTTTCGTTGC+AGG - chr5_3:4613659-4613678 Msa0792840:intron 35.0%
ACCAGGTCAAAAATAACCAT+GGG + chr5_3:4613692-4613711 None:intergenic 35.0%
! GTTTGCAAAAGTTGCGATTT+TGG + chr5_3:4613753-4613772 None:intergenic 35.0%
! ATCGCAACTTTTGCAAACAT+AGG - chr5_3:4613755-4613774 Msa0792840:intron 35.0%
! TCGCAACTTTTGCAAACATA+GGG - chr5_3:4613756-4613775 Msa0792840:intron 35.0%
CTGAGAAGCTTGAATTACAT+AGG - chr5_3:4614450-4614469 Msa0792840:intron 35.0%
! TTTCGTTTTCGTTGCAGTTT+TGG + chr5_3:4615313-4615332 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG - chr5_3:4615317-4615336 Msa0792840:intron 35.0%
GCAACGAAAACGAAACATAA+GGG - chr5_3:4615318-4615337 Msa0792840:intron 35.0%
CAACGAAAACGAAACATAAG+GGG - chr5_3:4615319-4615338 Msa0792840:intron 35.0%
CGCAATATTTGCAAACATAG+GGG - chr5_3:4615377-4615396 Msa0792840:intron 35.0%
GCAATATTTGCAAACATAGG+GGG - chr5_3:4615378-4615397 Msa0792840:intron 35.0%
! ACAAGGCTTAATAGCACTTT+TGG + chr5_3:4615404-4615423 None:intergenic 35.0%
ATAGACGTCTCAAAAGGTAA+GGG - chr5_3:4615794-4615813 Msa0792840:intron 35.0%
CTCAAACGATTGTTGAACTT+CGG - chr5_3:4616035-4616054 Msa0792840:intron 35.0%
GTGTTACAAATAGGTTGCTA+AGG - chr5_3:4616164-4616183 Msa0792840:intron 35.0%
CAAATAGGTTGCTAAGGAAT+AGG - chr5_3:4616170-4616189 Msa0792840:intron 35.0%
!! TTCGATGGTTTTACTTGTAC+AGG - chr5_3:4616431-4616450 Msa0792840:CDS 35.0%
TCATTGCTCTCATCAACTTT+GGG + chr5_3:4616474-4616493 None:intergenic 35.0%
TTCATTGCTCTCATCAACTT+TGG + chr5_3:4616475-4616494 None:intergenic 35.0%
!! AAAGTTGATGAGAGCAATGA+AGG - chr5_3:4616474-4616493 Msa0792840:CDS 35.0%
!! TCTTCTAAATTAGGGCATTG+TGG - chr5_3:4616516-4616535 Msa0792840:CDS 35.0%
!! CTTCTAAATTAGGGCATTGT+GGG - chr5_3:4616517-4616536 Msa0792840:CDS 35.0%
!! TTCTAAATTAGGGCATTGTG+GGG - chr5_3:4616518-4616537 Msa0792840:CDS 35.0%
ATAATAGTGGTACACATGTG+AGG + chr5_3:4616556-4616575 None:intergenic 35.0%
TGATTAAGGGTTGTGTTAAC+CGG - chr5_3:4616681-4616700 Msa0792840:five_prime_UTR 35.0%
AGCCAATGATACTGAGATGA+AGG - chr5_3:4612678-4612697 Msa0792840:three_prime_UTR 40.0%
CACTTACCAAATCTATGTGG+AGG + chr5_3:4612769-4612788 None:intergenic 40.0%
! TTTCGTTTTCGTTGCAGGTT+TGG - chr5_3:4613664-4613683 Msa0792840:intron 40.0%
CAGGTCAAAAATAACCATGG+GGG + chr5_3:4613690-4613709 None:intergenic 40.0%
CCAGGTCAAAAATAACCATG+GGG + chr5_3:4613691-4613710 None:intergenic 40.0%
GACCAGGTCAAAAATAACCA+TGG + chr5_3:4613693-4613712 None:intergenic 40.0%
! CGCAACTTTTGCAAACATAG+GGG - chr5_3:4613757-4613776 Msa0792840:intron 40.0%
! GCAACTTTTGCAAACATAGG+GGG - chr5_3:4613758-4613777 Msa0792840:intron 40.0%
TCGCAACTTTGGCAAACATA+GGG + chr5_3:4615221-4615240 None:intergenic 40.0%
ATCGCAACTTTGGCAAACAT+AGG + chr5_3:4615222-4615241 None:intergenic 40.0%
! GTTTGCCAAAGTTGCGATTT+TGG - chr5_3:4615224-4615243 Msa0792840:intron 40.0%
ACCAGGTCAAAAATGACCAT+GGG - chr5_3:4615285-4615304 Msa0792840:intron 40.0%
CGGTTACATTGCTTTGATTG+TGG + chr5_3:4615708-4615727 None:intergenic 40.0%
AGGAACATAGACGTCTCAAA+AGG - chr5_3:4615788-4615807 Msa0792840:intron 40.0%
CATAGACGTCTCAAAAGGTA+AGG - chr5_3:4615793-4615812 Msa0792840:intron 40.0%
!! TTTTCTTTCACGGGCTTGTT+GGG + chr5_3:4616203-4616222 None:intergenic 40.0%
! TTTTTCTTTCACGGGCTTGT+TGG + chr5_3:4616204-4616223 None:intergenic 40.0%
TTATGTTACCTTTCGGAGCA+TGG + chr5_3:4616323-4616342 None:intergenic 40.0%
AGAGCAATGAAGGTTAGACA+GGG - chr5_3:4616484-4616503 Msa0792840:CDS 40.0%
GAAGGTTAGACAGGGATATA+AGG - chr5_3:4616492-4616511 Msa0792840:CDS 40.0%
AGATACTTTAATCAGTGCCC+CGG + chr5_3:4616712-4616731 None:intergenic 40.0%
! GATGGGGCCTAAAAGAGTTT+TGG + chr5_3:4612504-4612523 None:intergenic 45.0%
ATGAAGGAAGCTGCAACAAC+AGG - chr5_3:4612694-4612713 Msa0792840:exon 45.0%
! AATCTATGTGGAGGCATAGG+AGG + chr5_3:4612760-4612779 None:intergenic 45.0%
! CCAAATCTATGTGGAGGCAT+AGG + chr5_3:4612763-4612782 None:intergenic 45.0%
CCTATGCCTCCACATAGATT+TGG - chr5_3:4612760-4612779 Msa0792840:intron 45.0%
GGTGACAGTTGGATCTAGAT+TGG + chr5_3:4613429-4613448 None:intergenic 45.0%
TAGATCCAACTGTCACCTGA+GGG - chr5_3:4613432-4613451 Msa0792840:CDS 45.0%
CGAAAACGAAACATAAGGGG+CGG + chr5_3:4615322-4615341 None:intergenic 45.0%
!!! CCCCATGGTTATTTTTGACC+TGG - chr5_3:4613688-4613707 Msa0792840:intron 45.0%
CACCCACATCACTTATGTGA+GGG - chr5_3:4613726-4613745 Msa0792840:intron 45.0%
ACCCACATCACTTATGTGAG+GGG - chr5_3:4613727-4613746 Msa0792840:intron 45.0%
GAGATTGGAAGAGCAACTTG+AGG + chr5_3:4614562-4614581 None:intergenic 45.0%
GCAACTTTGGCAAACATAGG+GGG + chr5_3:4615219-4615238 None:intergenic 45.0%
CGCAACTTTGGCAAACATAG+GGG + chr5_3:4615220-4615239 None:intergenic 45.0%
ACCCACATCACTTATGTGAG+GGG + chr5_3:4613727-4613746 None:intergenic 45.0%
CACCCACATCACTTATGTGA+GGG + chr5_3:4613726-4613745 None:intergenic 45.0%
GACCAGGTCAAAAATGACCA+TGG - chr5_3:4615284-4615303 Msa0792840:intron 45.0%
CCAGGTCAAAAATGACCATG+GGG - chr5_3:4615286-4615305 Msa0792840:intron 45.0%
CAGGTCAAAAATGACCATGG+GGG - chr5_3:4615287-4615306 Msa0792840:intron 45.0%
CGAAAACGAAACATAAGGGG+CGG - chr5_3:4615322-4615341 Msa0792840:intron 45.0%
TCTGTTCGAAGTTCCAGATG+TGG - chr5_3:4615630-4615649 Msa0792840:intron 45.0%
TTCGAAGTTCCAGATGTGGA+AGG - chr5_3:4615634-4615653 Msa0792840:intron 45.0%
CATTGTGTACCTTCCACATC+TGG + chr5_3:4615646-4615665 None:intergenic 45.0%
GTCTATGTTCCTTGTCTGCA+GGG + chr5_3:4615780-4615799 None:intergenic 45.0%
GTTGCTAAGGAATAGGGTCT+CGG - chr5_3:4616177-4616196 Msa0792840:intron 45.0%
GAGAGCAATGAAGGTTAGAC+AGG - chr5_3:4616483-4616502 Msa0792840:CDS 45.0%
GATACTTTAATCAGTGCCCC+GGG + chr5_3:4616711-4616730 None:intergenic 45.0%
!!! TTTTTTAATTAAATATTGAT+AGG + chr5_3:4612910-4612929 None:intergenic 5.0%
!! ATTGTTAAATAAAAATTTAA+CGG + chr5_3:4613178-4613197 None:intergenic 5.0%
!!! TTTAGTTTAATTAAAAATTT+AGG - chr5_3:4614419-4614438 Msa0792840:intron 5.0%
!!! TATTTAAAATTTTAAAAATC+TGG + chr5_3:4614676-4614695 None:intergenic 5.0%
!!! ATTTTATAAATATATAATAG+TGG + chr5_3:4616569-4616588 None:intergenic 5.0%
AAGGAAGCTGCAACAACAGG+AGG - chr5_3:4612697-4612716 Msa0792840:exon 50.0%
CTAGATCCAACTGTCACCTG+AGG - chr5_3:4613431-4613450 Msa0792840:CDS 50.0%
GCACCCACATCACTTATGTG+AGG - chr5_3:4613725-4613744 Msa0792840:intron 50.0%
GCCCCTCACATAAGTGATGT+GGG + chr5_3:4615246-4615265 None:intergenic 50.0%
AGGGGCCAAAATCGCAACTT+TGG + chr5_3:4613745-4613764 None:intergenic 50.0%
GCCCCTCACATAAGTGATGT+GGG - chr5_3:4615246-4615265 Msa0792840:intron 50.0%
GCACCCACATCACTTATGTG+AGG + chr5_3:4613725-4613744 None:intergenic 50.0%
!!! CCCCATGGTCATTTTTGACC+TGG + chr5_3:4615289-4615308 None:intergenic 50.0%
ACCGATGCTCAACTTCAAGC+AGG - chr5_3:4615724-4615743 Msa0792840:intron 50.0%
GCCTGCTTGAAGTTGAGCAT+CGG + chr5_3:4615728-4615747 None:intergenic 50.0%
TGTCTGCAGGGTTTCTTCCA+CGG + chr5_3:4615768-4615787 None:intergenic 50.0%
TGGAAGAAACCCTGCAGACA+AGG - chr5_3:4615768-4615787 Msa0792840:intron 50.0%
CGTCTATGTTCCTTGTCTGC+AGG + chr5_3:4615781-4615800 None:intergenic 50.0%
TCACTCCCTCAGGTGACAGT+TGG + chr5_3:4613440-4613459 None:intergenic 55.0%
TCTCGTGCATTCACTCCCTC+AGG + chr5_3:4613450-4613469 None:intergenic 55.0%
GGCCCCTCACATAAGTGATG+TGG + chr5_3:4615245-4615264 None:intergenic 55.0%
GGCCCCTCACATAAGTGATG+TGG - chr5_3:4615245-4615264 Msa0792840:intron 55.0%
CAACTTCAAGCAGGCTTCCC+CGG - chr5_3:4615733-4615752 Msa0792840:intron 55.0%
TCGGAGCATGGCGTTCTCAT+TGG + chr5_3:4616311-4616330 None:intergenic 55.0%
TGAGAACGCCATGCTCCGAA+AGG - chr5_3:4616312-4616331 Msa0792840:intron 55.0%
GTTGTGTTAACCGGTGCTCC+CGG - chr5_3:4616690-4616709 Msa0792840:five_prime_UTR 55.0%
TTGTGTTAACCGGTGCTCCC+GGG - chr5_3:4616691-4616710 Msa0792840:five_prime_UTR 55.0%
TGACCTGGTCCACGCTGACA+TGG - chr5_3:4613703-4613722 Msa0792840:intron 60.0%
! ATGTGGGTGCCATGTCAGCG+TGG + chr5_3:4615262-4615281 None:intergenic 60.0%
! ATGTGGGTGCCATGTCAGCG+TGG - chr5_3:4615262-4615281 Msa0792840:intron 60.0%
TGACCTGGTCCACGCTGACA+TGG + chr5_3:4613703-4613722 None:intergenic 60.0%
!! CGTTGCAGTTTTGGCCCCCA+TGG + chr5_3:4615304-4615323 None:intergenic 60.0%
CTGCAGGGTTTCTTCCACGG+CGG + chr5_3:4615765-4615784 None:intergenic 60.0%
TGTGTTAACCGGTGCTCCCG+GGG - chr5_3:4616692-4616711 Msa0792840:five_prime_UTR 60.0%
CGTTGCAGGTTTGGCCCCCA+TGG - chr5_3:4613673-4613692 Msa0792840:intron 65.0%
GTGCCATGTCAGCGTGGACC+AGG + chr5_3:4615268-4615287 None:intergenic 65.0%
GTGCCATGTCAGCGTGGACC+AGG - chr5_3:4615268-4615287 Msa0792840:intron 65.0%
! AATCAGTGCCCCGGGAGCAC+CGG + chr5_3:4616703-4616722 None:intergenic 65.0%
TCTTCCACGGCGGCGCTTGC+CGG + chr5_3:4615755-4615774 None:intergenic 70.0%
TTCCACGGCGGCGCTTGCCG+GGG + chr5_3:4615753-4615772 None:intergenic 75.0%
CTTCCACGGCGGCGCTTGCC+GGG + chr5_3:4615754-4615773 None:intergenic 75.0%
!! TTCCCCGGCAAGCGCCGCCG+TGG - chr5_3:4615748-4615767 Msa0792840:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 4612431 4616777 4612431 ID=Msa0792840;Name=Msa0792840
chr5_3 mRNA 4612431 4616777 4612431 ID=Msa0792840-mRNA-1;Parent=Msa0792840;Name=Msa0792840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=233|1|1|1|1|1|4|277|172
chr5_3 exon 4612431 4612755 4612431 ID=Msa0792840-mRNA-1:exon:1807;Parent=Msa0792840-mRNA-1
chr5_3 exon 4612875 4613031 4612875 ID=Msa0792840-mRNA-1:exon:1806;Parent=Msa0792840-mRNA-1
chr5_3 exon 4613399 4613594 4613399 ID=Msa0792840-mRNA-1:exon:1805;Parent=Msa0792840-mRNA-1
chr5_3 exon 4616427 4616777 4616427 ID=Msa0792840-mRNA-1:exon:1804;Parent=Msa0792840-mRNA-1
chr5_3 five_prime_UTR 4616545 4616777 4616545 ID=Msa0792840-mRNA-1:five_prime_utr;Parent=Msa0792840-mRNA-1
chr5_3 CDS 4616427 4616544 4616427 ID=Msa0792840-mRNA-1:cds;Parent=Msa0792840-mRNA-1
chr5_3 CDS 4613399 4613594 4613399 ID=Msa0792840-mRNA-1:cds;Parent=Msa0792840-mRNA-1
chr5_3 CDS 4612875 4613031 4612875 ID=Msa0792840-mRNA-1:cds;Parent=Msa0792840-mRNA-1
chr5_3 CDS 4612708 4612755 4612708 ID=Msa0792840-mRNA-1:cds;Parent=Msa0792840-mRNA-1
chr5_3 three_prime_UTR 4612431 4612707 4612431 ID=Msa0792840-mRNA-1:three_prime_utr;Parent=Msa0792840-mRNA-1
Gene Sequence

>Msa0792840

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACAGGAGGAGCACCTTCATCTTCATCTTCTTCATGGAATAGGCTACCTCCTATGCCTCCACATAGATTTGACGATAGCGATGAAGATCTGTTCGAAGTTCCAGATGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCCGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCCCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>Msa0792840

MSLSRANDTEMKEAATTGGAPSSSSSSWNRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDESNEG*