AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004018.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004018.01.T01 MTR_1g073140 95.816 239 10 0 1 239 1 239 1.16e-174 479
MsG0180004018.01.T01 MTR_1g073140 92.340 235 16 1 1 235 1 233 2.29e-162 449
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004018.01.T01 AT2G33255 68.161 223 69 1 19 239 23 245 1.30e-115 331

Find 78 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGCTTTATTGACTTCTT+AGG 0.133455 1:+71924976 MsG0180004018.01.T01:three_prime_UTR
AACCACTTACATCATCTTTA+AGG 0.144402 1:-71924072 None:intergenic
TTACCTATTACTAGTTTCTT+TGG 0.219683 1:+71925061 MsG0180004018.01.T01:three_prime_UTR
ATTTATTCCACCAACGCTTT+GGG 0.274021 1:+71922834 MsG0180004018.01.T01:CDS
GAAATCGACATTAGCATATT+CGG 0.286039 1:-71924684 None:intergenic
TTCTTGATTCAAAGAAAATT+AGG 0.286367 1:+71922774 MsG0180004018.01.T01:CDS
TACTGCATATCTGTTCTCTT+TGG 0.304882 1:+71924011 MsG0180004018.01.T01:CDS
ATTTACTACCAGGCATGATT+TGG 0.318202 1:-71922661 None:intergenic
GATTTATTCCACCAACGCTT+TGG 0.319915 1:+71922833 MsG0180004018.01.T01:CDS
ATCATAAACCACAAAATAAA+TGG 0.325555 1:-71924804 None:intergenic
GACGCCACGGAGGCGCGTTT+TGG 0.336627 1:-71922426 None:intergenic
AATCCAAAGAAACTAGTAAT+AGG 0.348757 1:-71925064 None:intergenic
ACTGCATATCTGTTCTCTTT+GGG 0.358743 1:+71924012 MsG0180004018.01.T01:CDS
AATAATGTTGTATCATATCT+TGG 0.360992 1:+71924944 MsG0180004018.01.T01:three_prime_UTR
AAAATGAGCAATGGTATCAT+AGG 0.361847 1:-71922615 None:intergenic
CCGACCATTACTACTTCATT+TGG 0.368014 1:-71924043 None:intergenic
AGGGAAGTTACCTTGAAATC+TGG 0.368119 1:-71924710 None:intergenic
AAATCGACATTAGCATATTC+GGG 0.370379 1:-71924683 None:intergenic
TAAGCTTTATTGACTTCTTA+GGG 0.375413 1:+71924977 MsG0180004018.01.T01:three_prime_UTR
GGAGCTGGATCAGGTTTATA+AGG 0.385703 1:-71923986 None:intergenic
TGGTTTATGATATAAGAATC+TGG 0.392922 1:+71924816 MsG0180004018.01.T01:three_prime_UTR
TAGAATGAGAATATTATGAT+TGG 0.415015 1:-71922322 None:intergenic
CGATTTCAAACCAGATTTCA+AGG 0.418712 1:+71924700 MsG0180004018.01.T01:CDS
ACTTGTCTGCTTGATCAAAC+TGG 0.423784 1:+71924647 MsG0180004018.01.T01:CDS
TTTATTCCTCACCTCATGTA+AGG 0.429471 1:+71924868 MsG0180004018.01.T01:three_prime_UTR
TACTAGTTTCTTTGGATTCG+CGG 0.435189 1:+71925069 MsG0180004018.01.T01:three_prime_UTR
ATTGCTTGTGGAGGGCGAGC+AGG 0.444789 1:+71924617 MsG0180004018.01.T01:CDS
TTAGGAGGGGTTTGATTACA+AGG 0.448691 1:+71922792 MsG0180004018.01.T01:CDS
CAAATGAAGTAGTAATGGTC+GGG 0.454036 1:+71924044 MsG0180004018.01.T01:CDS
TGCAGTAGTGGAGCTGGATC+AGG 0.459438 1:-71923995 None:intergenic
ATCGATTCCAGCAGGGTTTG+AGG 0.464862 1:-71922546 None:intergenic
AACTGACCCCAAAGCGTTGG+TGG 0.466469 1:-71922841 None:intergenic
GAGGAGGTGACATCTACATT+TGG 0.473312 1:+71924838 MsG0180004018.01.T01:three_prime_UTR
TTCAAGATATCGATTCCAGC+AGG 0.477823 1:-71922554 None:intergenic
CAGATATGCAGTAGTGGAGC+TGG 0.491301 1:-71924001 None:intergenic
CGAAATTCCCTGCTTAATGC+TGG 0.499413 1:-71923962 None:intergenic
TACTACCAGGCATGATTTGG+AGG 0.499592 1:-71922658 None:intergenic
ACTAGTTTCTTTGGATTCGC+GGG 0.509737 1:+71925070 MsG0180004018.01.T01:three_prime_UTR
GCCGAGTACTGCTTTGTACA+TGG 0.510991 1:-71922498 None:intergenic
AGAATGAGAATATTATGATT+GGG 0.516842 1:-71922321 None:intergenic
GCGAACAAAACTTGAGATCA+TGG 0.518487 1:-71924776 None:intergenic
GTCAAAGCCTCAAACCCTGC+TGG 0.521374 1:+71922539 MsG0180004018.01.T01:CDS
ACATGGTGCGTGGGAAGAGA+AGG 0.533604 1:-71922388 None:intergenic
GAGCAATGGTATCATAGGCT+TGG 0.543525 1:-71922610 None:intergenic
TTGATTCAAAGAAAATTAGG+AGG 0.544314 1:+71922777 MsG0180004018.01.T01:CDS
TCTTGAAACTCATTGATCAC+TGG 0.545427 1:+71922570 MsG0180004018.01.T01:CDS
GAATGAATGTCACAAAATAG+TGG 0.551438 1:+71924999 MsG0180004018.01.T01:three_prime_UTR
TCAACCAAATGAAGTAGTAA+TGG 0.553506 1:+71924039 MsG0180004018.01.T01:CDS
GATCACCTCCAAATCATGCC+TGG 0.556305 1:+71922653 MsG0180004018.01.T01:CDS
AGGGAAATCAATGACGGGGA+CGG 0.561282 1:-71922474 None:intergenic
TCCATGTACAAAGCAGTACT+CGG 0.569767 1:+71922497 MsG0180004018.01.T01:CDS
ATGGAAGGGAAATCAATGAC+GGG 0.572088 1:-71922479 None:intergenic
AGTACTGCTTTGTACATGGA+AGG 0.576818 1:-71922494 None:intergenic
CCAAATGAAGTAGTAATGGT+CGG 0.579295 1:+71924043 MsG0180004018.01.T01:CDS
TAGGCTTGGCGTTGTTGATG+TGG 0.585097 1:-71922596 None:intergenic
AGAGAACAGATATGCAGTAG+TGG 0.586307 1:-71924007 None:intergenic
GGTGGTTAAGTGTGATGACA+TGG 0.587907 1:-71922405 None:intergenic
CAAAACTGACCCCAAAGCGT+TGG 0.588066 1:-71922844 None:intergenic
TGATTCAAAGAAAATTAGGA+GGG 0.590623 1:+71922778 MsG0180004018.01.T01:CDS
ATGATATAAGAATCTGGAGG+AGG 0.593886 1:+71924822 MsG0180004018.01.T01:three_prime_UTR
TCATGACCTTACATGAGGTG+AGG 0.596319 1:-71924874 None:intergenic
AAATGAAGTAGTAATGGTCG+GGG 0.605638 1:+71924045 MsG0180004018.01.T01:CDS
AATTGAGTAAACTTCAGAGA+GGG 0.606847 1:-71924729 None:intergenic
GATTCAAAGAAAATTAGGAG+GGG 0.613293 1:+71922779 MsG0180004018.01.T01:CDS
CATGGAAGGGAAATCAATGA+CGG 0.615972 1:-71922480 None:intergenic
TTTATTCCACCAACGCTTTG+GGG 0.616024 1:+71922835 MsG0180004018.01.T01:CDS
GAGGTGACATCTACATTTGG+AGG 0.618466 1:+71924841 MsG0180004018.01.T01:three_prime_UTR
GTCTGCTTGATCAAACTGGA+AGG 0.626822 1:+71924651 MsG0180004018.01.T01:CDS
AAGTGTGATGACATGGTGCG+TGG 0.628658 1:-71922398 None:intergenic
TCAAGATATCGATTCCAGCA+GGG 0.632481 1:-71922553 None:intergenic
ACCACCAAAACGCGCCTCCG+TGG 0.633706 1:+71922422 MsG0180004018.01.T01:CDS
GTACTGCTTTGTACATGGAA+GGG 0.645077 1:-71922493 None:intergenic
CCATGTCGAAAACGACGCCA+CGG 0.669079 1:-71922439 None:intergenic
AGTGTGATGACATGGTGCGT+GGG 0.699733 1:-71922397 None:intergenic
TGTCGAAAACGACGCCACGG+AGG 0.727352 1:-71922436 None:intergenic
TGGAAGGGAAATCAATGACG+GGG 0.729656 1:-71922478 None:intergenic
GAATTGAGTAAACTTCAGAG+AGG 0.733429 1:-71924730 None:intergenic
TTTATGATATAAGAATCTGG+AGG 0.768254 1:+71924819 MsG0180004018.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTACTTTTTTTATTATATT+AGG + Chr1:71922704-71922723 MsG0180004018.01.T01:intron 10.0%
!! ATTGAATATGAACAAATAAA+AGG - Chr1:71923829-71923848 None:intergenic 15.0%
!!! TGATTTTTTCAAATTATTAG+CGG + Chr1:71923023-71923042 MsG0180004018.01.T01:intron 15.0%
!!! TTTTATTTGTTCATATTCAA+TGG + Chr1:71923828-71923847 MsG0180004018.01.T01:intron 15.0%
!! AATAATGTTGTATCATATCT+TGG + Chr1:71924944-71924963 MsG0180004018.01.T01:three_prime_UTR 20.0%
!! AATATGAACAAATAAAAGGA+GGG - Chr1:71923825-71923844 None:intergenic 20.0%
!! AGAATGAGAATATTATGATT+GGG - Chr1:71922324-71922343 None:intergenic 20.0%
!! AGAGCATGTTTATAAAAAAA+AGG - Chr1:71923288-71923307 None:intergenic 20.0%
!! ATCATAAACCACAAAATAAA+TGG - Chr1:71924807-71924826 None:intergenic 20.0%
!! GAACATTCAATCAAATTAAT+GGG - Chr1:71924103-71924122 None:intergenic 20.0%
!! GAGCATGTTTATAAAAAAAA+GGG - Chr1:71923287-71923306 None:intergenic 20.0%
!! GGAGTTAAATTTATAAAGTT+TGG + Chr1:71923360-71923379 MsG0180004018.01.T01:intron 20.0%
!! TAGAATGAGAATATTATGAT+TGG - Chr1:71922325-71922344 None:intergenic 20.0%
!! TCAATTTACATTACACAATT+GGG + Chr1:71922912-71922931 MsG0180004018.01.T01:intron 20.0%
!! TGAACATTCAATCAAATTAA+TGG - Chr1:71924104-71924123 None:intergenic 20.0%
!! TTCTTGATTCAAAGAAAATT+AGG + Chr1:71922774-71922793 MsG0180004018.01.T01:CDS 20.0%
!! TTGAATGTTCATGATTTATA+TGG + Chr1:71924113-71924132 MsG0180004018.01.T01:intron 20.0%
!! TTTCTCAAAGATTAACAAAA+TGG - Chr1:71923398-71923417 None:intergenic 20.0%
!!! GATTTTATTCTATCTTGTTA+TGG - Chr1:71923549-71923568 None:intergenic 20.0%
!!! TTGTTTGAATTGACTTATTT+AGG - Chr1:71923720-71923739 None:intergenic 20.0%
! AATCCAAAGAAACTAGTAAT+AGG - Chr1:71925067-71925086 None:intergenic 25.0%
! AATTCAAACAAACCCTTAAA+AGG + Chr1:71923729-71923748 MsG0180004018.01.T01:intron 25.0%
! AATTGAAACGGTTAAAGTTA+TGG - Chr1:71924382-71924401 None:intergenic 25.0%
! AGAAACAATTGTAAAATCGA+AGG + Chr1:71924178-71924197 MsG0180004018.01.T01:intron 25.0%
! ATATGAACAAATAAAAGGAG+GGG - Chr1:71923824-71923843 None:intergenic 25.0%
! ATTGAAACGGTTAAAGTTAT+GGG - Chr1:71924381-71924400 None:intergenic 25.0%
! CTCAATTTACATTACACAAT+TGG + Chr1:71922911-71922930 MsG0180004018.01.T01:intron 25.0%
! GAATATGAACAAATAAAAGG+AGG - Chr1:71923826-71923845 None:intergenic 25.0%
! GAGAAAACAAAATCAGTAAA+AGG + Chr1:71923412-71923431 MsG0180004018.01.T01:intron 25.0%
! GCATAATAAATTGAACTAAC+AGG + Chr1:71923784-71923803 MsG0180004018.01.T01:intron 25.0%
! TAAGTGGCATAAAATTGAAA+CGG - Chr1:71924394-71924413 None:intergenic 25.0%
! TACAAAAGAAGAAGAAAAGT+AGG - Chr1:71922688-71922707 None:intergenic 25.0%
! TCTTCACAATCATAAATAAG+TGG + Chr1:71924450-71924469 MsG0180004018.01.T01:intron 25.0%
! TGAATCAACAAATATTTCGT+TGG - Chr1:71924538-71924557 None:intergenic 25.0%
! TGATTAATTAATTATGCTGC+AGG + Chr1:71922731-71922750 MsG0180004018.01.T01:intron 25.0%
! TGATTCAAAGAAAATTAGGA+GGG + Chr1:71922778-71922797 MsG0180004018.01.T01:CDS 25.0%
! TGGTTTATGATATAAGAATC+TGG + Chr1:71924816-71924835 MsG0180004018.01.T01:three_prime_UTR 25.0%
! TGTTATCAAGTTACTACTAT+TGG + Chr1:71923320-71923339 MsG0180004018.01.T01:intron 25.0%
! TTCATTGTAATTATGTGTGT+TGG - Chr1:71922998-71923017 None:intergenic 25.0%
! TTGATTCAAAGAAAATTAGG+AGG + Chr1:71922777-71922796 MsG0180004018.01.T01:CDS 25.0%
! TTTATGATATAAGAATCTGG+AGG + Chr1:71924819-71924838 MsG0180004018.01.T01:three_prime_UTR 25.0%
!! GACAACTGAGTAATTTTATA+TGG + Chr1:71923456-71923475 MsG0180004018.01.T01:intron 25.0%
!! TCTTGAGACAAATTTTGAAT+TGG + Chr1:71924751-71924770 MsG0180004018.01.T01:CDS 25.0%
!! TTACCTATTACTAGTTTCTT+TGG + Chr1:71925061-71925080 MsG0180004018.01.T01:three_prime_UTR 25.0%
!!! AAAAAGTCCTTGACATTTTT+TGG + Chr1:71924900-71924919 MsG0180004018.01.T01:three_prime_UTR 25.0%
!!! AGATGTTCATAAGTTGTTTT+CGG - Chr1:71923637-71923656 None:intergenic 25.0%
!!! TAAGCTTTATTGACTTCTTA+GGG + Chr1:71924977-71924996 MsG0180004018.01.T01:three_prime_UTR 25.0%
!!! TTTGTTGATTCAGATGTATT+TGG + Chr1:71924546-71924565 MsG0180004018.01.T01:intron 25.0%
!!! TTTTATGCCACTTATAATAC+CGG + Chr1:71924400-71924419 MsG0180004018.01.T01:intron 25.0%
AAAAGTAGGTATTTACTACC+AGG - Chr1:71922674-71922693 None:intergenic 30.0%
AAAATGAGCAATGGTATCAT+AGG - Chr1:71922618-71922637 None:intergenic 30.0%
AAATCGACATTAGCATATTC+GGG - Chr1:71924686-71924705 None:intergenic 30.0%
AACCACTTACATCATCTTTA+AGG - Chr1:71924075-71924094 None:intergenic 30.0%
AAGCCAATGTTGTTAAATAG+CGG - Chr1:71923179-71923198 None:intergenic 30.0%
AATTGAGTAAACTTCAGAGA+GGG - Chr1:71924732-71924751 None:intergenic 30.0%
ATACCAAAATGCATAGTGAA+AGG - Chr1:71924355-71924374 None:intergenic 30.0%
ATACTGTTTGAGAAAGCTTA+TGG - Chr1:71923672-71923691 None:intergenic 30.0%
ATTATGCCTCCAATAGAATT+GGG - Chr1:71923771-71923790 None:intergenic 30.0%
CATTATTGTCATGTCAACAA+AGG + Chr1:71923231-71923250 MsG0180004018.01.T01:intron 30.0%
CTATGAACCAAAAAATGTCA+AGG - Chr1:71924910-71924929 None:intergenic 30.0%
GAAATCGACATTAGCATATT+CGG - Chr1:71924687-71924706 None:intergenic 30.0%
GAATGAATGTCACAAAATAG+TGG + Chr1:71924999-71925018 MsG0180004018.01.T01:three_prime_UTR 30.0%
GATTCAAAGAAAATTAGGAG+GGG + Chr1:71922779-71922798 MsG0180004018.01.T01:CDS 30.0%
TACTTACAACTATTCAGAGT+TGG + Chr1:71922887-71922906 MsG0180004018.01.T01:intron 30.0%
TATTATGCCTCCAATAGAAT+TGG - Chr1:71923772-71923791 None:intergenic 30.0%
TCAACCAAATGAAGTAGTAA+TGG + Chr1:71924039-71924058 MsG0180004018.01.T01:CDS 30.0%
TGGAAAATATGTGCATAGAA+TGG - Chr1:71924518-71924537 None:intergenic 30.0%
TTTACAAGCAATCACACTAT+GGG - Chr1:71924314-71924333 None:intergenic 30.0%
TTTACATTACACAATTGGGT+TGG + Chr1:71922916-71922935 MsG0180004018.01.T01:intron 30.0%
TTTCAAATTATTAGCGGTGT+CGG + Chr1:71923029-71923048 MsG0180004018.01.T01:intron 30.0%
TTTCACAACAAAATCCAGAA+AGG + Chr1:71924224-71924243 MsG0180004018.01.T01:intron 30.0%
! AAAAGCAGATGAACCTTTTA+AGG - Chr1:71923745-71923764 None:intergenic 30.0%
! AAAGCAGATGAACCTTTTAA+GGG - Chr1:71923744-71923763 None:intergenic 30.0%
! ATTGAACTAACAGGTTTTTC+TGG + Chr1:71923793-71923812 MsG0180004018.01.T01:intron 30.0%
! GATTCAGATGTATTTGGAAT+TGG + Chr1:71924552-71924571 MsG0180004018.01.T01:intron 30.0%
! GTCTACTAGTTAGAACTTTT+AGG - Chr1:71924251-71924270 None:intergenic 30.0%
! TTTTACAAGCAATCACACTA+TGG - Chr1:71924315-71924334 None:intergenic 30.0%
! TTTTTACCCAATTCTATTGG+AGG + Chr1:71923762-71923781 MsG0180004018.01.T01:intron 30.0%
!! CATTGCTCATTTTGAAAAAC+AGG + Chr1:71922625-71922644 MsG0180004018.01.T01:CDS 30.0%
!! CTGTTTTTCAAAATGAGCAA+TGG - Chr1:71922627-71922646 None:intergenic 30.0%
!! GTAAGCTTTATTGACTTCTT+AGG + Chr1:71924976-71924995 MsG0180004018.01.T01:three_prime_UTR 30.0%
!! TTGATTTGCAATAAGGATGA+GGG + Chr1:71924426-71924445 MsG0180004018.01.T01:intron 30.0%
!! TTTGATTTGCAATAAGGATG+AGG + Chr1:71924425-71924444 MsG0180004018.01.T01:intron 30.0%
!!! ACATTTTTTGGTTCATAGGT+GGG + Chr1:71924912-71924931 MsG0180004018.01.T01:three_prime_UTR 30.0%
!!! CTTGACATTTTTTGGTTCAT+AGG + Chr1:71924908-71924927 MsG0180004018.01.T01:three_prime_UTR 30.0%
!!! GCTTTTTTACCCAATTCTAT+TGG + Chr1:71923759-71923778 MsG0180004018.01.T01:intron 30.0%
!!! TTTTTTCATGACCTTACATG+AGG - Chr1:71924882-71924901 None:intergenic 30.0%
AAATGAAGTAGTAATGGTCG+GGG + Chr1:71924045-71924064 MsG0180004018.01.T01:CDS 35.0%
ACAACACTGAATATGAAGCA+CGG - Chr1:71923085-71923104 None:intergenic 35.0%
ACTGCATATCTGTTCTCTTT+GGG + Chr1:71924012-71924031 MsG0180004018.01.T01:CDS 35.0%
AGCCTTAAAGATGATGTAAG+TGG + Chr1:71924070-71924089 MsG0180004018.01.T01:intron 35.0%
ATATTCAATGGCTCATCGTA+TGG + Chr1:71923840-71923859 MsG0180004018.01.T01:intron 35.0%
ATGATATAAGAATCTGGAGG+AGG + Chr1:71924822-71924841 MsG0180004018.01.T01:three_prime_UTR 35.0%
ATTGGCTGTGGTTTCAATAT+TGG + Chr1:71923338-71923357 MsG0180004018.01.T01:intron 35.0%
ATTTACTACCAGGCATGATT+TGG - Chr1:71922664-71922683 None:intergenic 35.0%
ATTTATTCCACCAACGCTTT+GGG + Chr1:71922834-71922853 MsG0180004018.01.T01:CDS 35.0%
CAAATGAAGTAGTAATGGTC+GGG + Chr1:71924044-71924063 MsG0180004018.01.T01:CDS 35.0%
CATGTCAACAAAGGTTTGTA+TGG + Chr1:71923240-71923259 MsG0180004018.01.T01:intron 35.0%
CCAAATGAAGTAGTAATGGT+CGG + Chr1:71924043-71924062 MsG0180004018.01.T01:CDS 35.0%
CCTTATTGCAAATCAAATGC+CGG - Chr1:71924422-71924441 None:intergenic 35.0%
CGATTTCAAACCAGATTTCA+AGG + Chr1:71924700-71924719 MsG0180004018.01.T01:CDS 35.0%
GAAAGATATTGCTTCAAGCT+GGG - Chr1:71924496-71924515 None:intergenic 35.0%
GAATTGAGTAAACTTCAGAG+AGG - Chr1:71924733-71924752 None:intergenic 35.0%
GATTGTTCATTTGTACCCAA+AGG - Chr1:71924155-71924174 None:intergenic 35.0%
GCACAGATTGCAAAAAATAG+TGG + Chr1:71923108-71923127 MsG0180004018.01.T01:intron 35.0%
TACTGCATATCTGTTCTCTT+TGG + Chr1:71924011-71924030 MsG0180004018.01.T01:CDS 35.0%
TAGCCGCTATTTAACAACAT+TGG + Chr1:71923173-71923192 MsG0180004018.01.T01:intron 35.0%
TCAAATGCCGGTATTATAAG+TGG - Chr1:71924410-71924429 None:intergenic 35.0%
TCTTGAAACTCATTGATCAC+TGG + Chr1:71922570-71922589 MsG0180004018.01.T01:CDS 35.0%
TGTAAAAGAACCCTATGACT+CGG + Chr1:71924328-71924347 MsG0180004018.01.T01:intron 35.0%
TTGGCTGTGGTTTCAATATT+GGG + Chr1:71923339-71923358 MsG0180004018.01.T01:intron 35.0%
TTTATTCCTCACCTCATGTA+AGG + Chr1:71924868-71924887 MsG0180004018.01.T01:three_prime_UTR 35.0%
! AAGCTATCTTAGAGAGCTTT+TGG + Chr1:71923604-71923623 MsG0180004018.01.T01:intron 35.0%
! ATTTTCTCCAGCATTAAGCA+GGG + Chr1:71923955-71923974 MsG0180004018.01.T01:CDS 35.0%
! CAGATGTATTTGGAATTGGA+TGG + Chr1:71924556-71924575 MsG0180004018.01.T01:intron 35.0%
! GCTATTTAACAACATTGGCT+TGG + Chr1:71923178-71923197 MsG0180004018.01.T01:intron 35.0%
! GTAAAAGGAATTTGAGACTG+TGG + Chr1:71923427-71923446 MsG0180004018.01.T01:intron 35.0%
! GTAATTATGTGTGTTGGTGT+CGG - Chr1:71922992-71923011 None:intergenic 35.0%
! TACTAGTTTCTTTGGATTCG+CGG + Chr1:71925069-71925088 MsG0180004018.01.T01:three_prime_UTR 35.0%
!! TAGAACTTTTAGGTCCTTTC+TGG - Chr1:71924241-71924260 None:intergenic 35.0%
!!! GACATTTTTTGGTTCATAGG+TGG + Chr1:71924911-71924930 MsG0180004018.01.T01:three_prime_UTR 35.0%
AAATGTAATCTGCAGCAACG+AGG - Chr1:71923939-71923958 None:intergenic 40.0%
AAGCCATAATTGTCCACCTT+TGG + Chr1:71924136-71924155 MsG0180004018.01.T01:intron 40.0%
ACTTGTCTGCTTGATCAAAC+TGG + Chr1:71924647-71924666 MsG0180004018.01.T01:CDS 40.0%
AGAGAACAGATATGCAGTAG+TGG - Chr1:71924010-71924029 None:intergenic 40.0%
AGCCATAATTGTCCACCTTT+GGG + Chr1:71924137-71924156 MsG0180004018.01.T01:intron 40.0%
AGGGAAGTTACCTTGAAATC+TGG - Chr1:71924713-71924732 None:intergenic 40.0%
AGTACTGCTTTGTACATGGA+AGG - Chr1:71922497-71922516 None:intergenic 40.0%
ATAAATAAGTGGCCTGCACA+GGG + Chr1:71924461-71924480 MsG0180004018.01.T01:intron 40.0%
ATGGAAGGGAAATCAATGAC+GGG - Chr1:71922482-71922501 None:intergenic 40.0%
CACAAAGGACAGCTAATTTG+AGG - Chr1:71922968-71922987 None:intergenic 40.0%
CATGGAAGGGAAATCAATGA+CGG - Chr1:71922483-71922502 None:intergenic 40.0%
CCGACCATTACTACTTCATT+TGG - Chr1:71924046-71924065 None:intergenic 40.0%
CTGAATATGAAGCACGGATA+CGG - Chr1:71923079-71923098 None:intergenic 40.0%
GATTTATTCCACCAACGCTT+TGG + Chr1:71922833-71922852 MsG0180004018.01.T01:CDS 40.0%
GCGAACAAAACTTGAGATCA+TGG - Chr1:71924779-71924798 None:intergenic 40.0%
GGAAAGATATTGCTTCAAGC+TGG - Chr1:71924497-71924516 None:intergenic 40.0%
GTACTGCTTTGTACATGGAA+GGG - Chr1:71922496-71922515 None:intergenic 40.0%
TACCCAAAGGTGGACAATTA+TGG - Chr1:71924142-71924161 None:intergenic 40.0%
TCCACAAGCAATCTGCAAAA+TGG - Chr1:71924609-71924628 None:intergenic 40.0%
TCCATGTACAAAGCAGTACT+CGG + Chr1:71922497-71922516 MsG0180004018.01.T01:CDS 40.0%
TGTTCATTTGTACCCAAAGG+TGG - Chr1:71924152-71924171 None:intergenic 40.0%
TTAGGAGGGGTTTGATTACA+AGG + Chr1:71922792-71922811 MsG0180004018.01.T01:CDS 40.0%
TTTATTCCACCAACGCTTTG+GGG + Chr1:71922835-71922854 MsG0180004018.01.T01:CDS 40.0%
! ACCATTTTGCAGATTGCTTG+TGG + Chr1:71924605-71924624 MsG0180004018.01.T01:intron 40.0%
! ACTAGTTTCTTTGGATTCGC+GGG + Chr1:71925070-71925089 MsG0180004018.01.T01:three_prime_UTR 40.0%
! ATTTTGCAGATTGCTTGTGG+AGG + Chr1:71924608-71924627 MsG0180004018.01.T01:intron 40.0%
! CAAGTTACTACTATTGGCTG+TGG + Chr1:71923326-71923345 MsG0180004018.01.T01:intron 40.0%
! CATTTTCTCCAGCATTAAGC+AGG + Chr1:71923954-71923973 MsG0180004018.01.T01:CDS 40.0%
! GAAGAGAAGGAAAGCTTTTG+CGG - Chr1:71922378-71922397 None:intergenic 40.0%
! GAATTTGAGACTGTGGCATT+TGG + Chr1:71923434-71923453 MsG0180004018.01.T01:intron 40.0%
! GGTCCTTTCACTATGCATTT+TGG + Chr1:71924349-71924368 MsG0180004018.01.T01:intron 40.0%
! TTTTGCAGATTGCTTGTGGA+GGG + Chr1:71924609-71924628 MsG0180004018.01.T01:intron 40.0%
!! CCGGCATTTGATTTGCAATA+AGG + Chr1:71924419-71924438 MsG0180004018.01.T01:intron 40.0%
!! TCAAGATATCGATTCCAGCA+GGG - Chr1:71922556-71922575 None:intergenic 40.0%
!! TTCAAGATATCGATTCCAGC+AGG - Chr1:71922557-71922576 None:intergenic 40.0%
AATGGCTCATCGTATGGTGA+AGG + Chr1:71923846-71923865 MsG0180004018.01.T01:intron 45.0%
AGTGAAAGGACCGAGTCATA+GGG - Chr1:71924341-71924360 None:intergenic 45.0%
ATGAAGCACGGATACGGATA+CGG - Chr1:71923073-71923092 None:intergenic 45.0%
CATAAATAAGTGGCCTGCAC+AGG + Chr1:71924460-71924479 MsG0180004018.01.T01:intron 45.0%
CGAAATTCCCTGCTTAATGC+TGG - Chr1:71923965-71923984 None:intergenic 45.0%
GAGCAATGGTATCATAGGCT+TGG - Chr1:71922613-71922632 None:intergenic 45.0%
GAGGAGGTGACATCTACATT+TGG + Chr1:71924838-71924857 MsG0180004018.01.T01:three_prime_UTR 45.0%
GAGGTGACATCTACATTTGG+AGG + Chr1:71924841-71924860 MsG0180004018.01.T01:three_prime_UTR 45.0%
GGAGCTGGATCAGGTTTATA+AGG - Chr1:71923989-71924008 None:intergenic 45.0%
GGTGGTTAAGTGTGATGACA+TGG - Chr1:71922408-71922427 None:intergenic 45.0%
GTCTGCTTGATCAAACTGGA+AGG + Chr1:71924651-71924670 MsG0180004018.01.T01:CDS 45.0%
TAGTGAAAGGACCGAGTCAT+AGG - Chr1:71924342-71924361 None:intergenic 45.0%
TCATGACCTTACATGAGGTG+AGG - Chr1:71924877-71924896 None:intergenic 45.0%
TGGAAGGGAAATCAATGACG+GGG - Chr1:71922481-71922500 None:intergenic 45.0%
! TACTACCAGGCATGATTTGG+AGG - Chr1:71922661-71922680 None:intergenic 45.0%
!!! CGCGTGGACCATTTATTTTG+TGG + Chr1:71924796-71924815 MsG0180004018.01.T01:three_prime_UTR 45.0%
!!! GATCTCAAGTTTTGTTCGCG+TGG + Chr1:71924780-71924799 MsG0180004018.01.T01:exon 45.0%
AAGTGTGATGACATGGTGCG+TGG - Chr1:71922401-71922420 None:intergenic 50.0%
AGTGTGATGACATGGTGCGT+GGG - Chr1:71922400-71922419 None:intergenic 50.0%
CAAAACTGACCCCAAAGCGT+TGG - Chr1:71922847-71922866 None:intergenic 50.0%
GATCACCTCCAAATCATGCC+TGG + Chr1:71922653-71922672 MsG0180004018.01.T01:CDS 50.0%
TAGGCTTGGCGTTGTTGATG+TGG - Chr1:71922599-71922618 None:intergenic 50.0%
! AGGGAAATCAATGACGGGGA+CGG - Chr1:71922477-71922496 None:intergenic 50.0%
! ATCGATTCCAGCAGGGTTTG+AGG - Chr1:71922549-71922568 None:intergenic 50.0%
! CAGATATGCAGTAGTGGAGC+TGG - Chr1:71924004-71924023 None:intergenic 50.0%
! GCCGAGTACTGCTTTGTACA+TGG - Chr1:71922501-71922520 None:intergenic 50.0%
! GCTTTTGCGGAAGAGAGCAA+TGG - Chr1:71922365-71922384 None:intergenic 50.0%
!! TGTGTTGGTGTCGGACACAA+AGG - Chr1:71922983-71923002 None:intergenic 50.0%
ACATGGTGCGTGGGAAGAGA+AGG - Chr1:71922391-71922410 None:intergenic 55.0%
ACGGATACGGATACGGACAC+CGG - Chr1:71923066-71923085 None:intergenic 55.0%
CCATGTCGAAAACGACGCCA+CGG - Chr1:71922442-71922461 None:intergenic 55.0%
GGGTTGAAGTTACCCTGTGC+AGG - Chr1:71924476-71924495 None:intergenic 55.0%
GTCAAAGCCTCAAACCCTGC+TGG + Chr1:71922539-71922558 MsG0180004018.01.T01:CDS 55.0%
! TGCAGTAGTGGAGCTGGATC+AGG - Chr1:71923998-71924017 None:intergenic 55.0%
!! AACTGACCCCAAAGCGTTGG+TGG - Chr1:71922844-71922863 None:intergenic 55.0%
!! GGCGTCGTTTTCGACATGGA+CGG + Chr1:71922443-71922462 MsG0180004018.01.T01:CDS 55.0%
ATTGCTTGTGGAGGGCGAGC+AGG + Chr1:71924617-71924636 MsG0180004018.01.T01:CDS 60.0%
TGTCGAAAACGACGCCACGG+AGG - Chr1:71922439-71922458 None:intergenic 60.0%
!! CCGTGGCGTCGTTTTCGACA+TGG + Chr1:71922439-71922458 MsG0180004018.01.T01:CDS 60.0%
ACCACCAAAACGCGCCTCCG+TGG + Chr1:71922422-71922441 MsG0180004018.01.T01:CDS 65.0%
!! GGTGTCGGCGTGTCAGTGTC+CGG + Chr1:71923044-71923063 MsG0180004018.01.T01:intron 65.0%
!! GACGCCACGGAGGCGCGTTT+TGG - Chr1:71922429-71922448 None:intergenic 70.0%
!! GCCACGGAGGCGCGTTTTGG+TGG - Chr1:71922426-71922445 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 71922320 71925100 71922320 ID=MsG0180004018.01;Name=MsG0180004018.01
Chr1 mRNA 71922320 71925100 71922320 ID=MsG0180004018.01.T01;Parent=MsG0180004018.01;Name=MsG0180004018.01.T01;_AED=0.33;_eAED=0.33;_QI=39|1|1|1|1|1|4|319|239
Chr1 exon 71922320 71922674 71922320 ID=MsG0180004018.01.T01:exon:30993;Parent=MsG0180004018.01.T01
Chr1 exon 71922753 71922856 71922753 ID=MsG0180004018.01.T01:exon:30994;Parent=MsG0180004018.01.T01
Chr1 exon 71923950 71924084 71923950 ID=MsG0180004018.01.T01:exon:30995;Parent=MsG0180004018.01.T01
Chr1 exon 71924617 71925100 71924617 ID=MsG0180004018.01.T01:exon:30996;Parent=MsG0180004018.01.T01
Chr1 five_prime_UTR 71922320 71922358 71922320 ID=MsG0180004018.01.T01:five_prime_utr;Parent=MsG0180004018.01.T01
Chr1 CDS 71922359 71922674 71922359 ID=MsG0180004018.01.T01:cds;Parent=MsG0180004018.01.T01
Chr1 CDS 71922753 71922856 71922753 ID=MsG0180004018.01.T01:cds;Parent=MsG0180004018.01.T01
Chr1 CDS 71923950 71924084 71923950 ID=MsG0180004018.01.T01:cds;Parent=MsG0180004018.01.T01
Chr1 CDS 71924617 71924781 71924617 ID=MsG0180004018.01.T01:cds;Parent=MsG0180004018.01.T01
Chr1 three_prime_UTR 71924782 71925100 71924782 ID=MsG0180004018.01.T01:three_prime_utr;Parent=MsG0180004018.01.T01
Gene Sequence

>MsG0180004018.01.T01

ATGCCATTGCTCTCTTCCGCAAAAGCTTTCCTTCTCTTCCCACGCACCATGTCATCACACTTAACCACCAAAACGCGCCTCCGTGGCGTCGTTTTCGACATGGACGGAACTCTCACCGTCCCCGTCATTGATTTCCCTTCCATGTACAAAGCAGTACTCGGCGACGATGAGTATCTACGCGTCAAAGCCTCAAACCCTGCTGGAATCGATATCTTGAAACTCATTGATCACTGGTCTCCACATCAACAACGCCAAGCCTATGATACCATTGCTCATTTTGAAAAACAGGCTCTCGATCACCTCCAAATCATGCCTGGTGCTTCTGAGCTTTGTAATGTTCTTGATTCAAAGAAAATTAGGAGGGGTTTGATTACAAGGAATATGAAATCTGCTGTTGATTTATTCCACCAACGCTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCTGATCCAGCTCCACTACTGCATATCTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTAGTAATGGTCGGGGATAGCCTTAAAGATGATATTGCTTGTGGAGGGCGAGCAGGAGCACATACTTGTCTGCTTGATCAAACTGGAAGGTATGATTCTCCCGAATATGCTAATGTCGATTTCAAACCAGATTTCAAGGTAACTTCCCTCTCTGAAGTTTACTCAATTCTTGAGACAAATTTTGAATTGGCACCATGA

Protein sequence

>MsG0180004018.01.T01

MPLLSSAKAFLLFPRTMSSHLTTKTRLRGVVFDMDGTLTVPVIDFPSMYKAVLGDDEYLRVKASNPAGIDILKLIDHWSPHQQRQAYDTIAHFEKQALDHLQIMPGASELCNVLDSKKIRRGLITRNMKSAVDLFHQRFGITFSPALSREFRPYKPDPAPLLHICSLWEVQPNEVVMVGDSLKDDIACGGRAGAHTCLLDQTGRYDSPEYANVDFKPDFKVTSLSEVYSILETNFELAP*