AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081520 MtrunA17_Chr7g0268601 86.264 182 17 2 1 174 1 182 5.02e-100 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081520 AT4G03150.1 60.000 130 50 1 41 168 52 181 5.44e-52 164

Find 65 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTTACTTTACATAAA+TGG 0.225005 7_2:-81302877 Msa1081520:CDS
ATTGGAAACCATTTCTTATA+AGG 0.243835 7_2:-81302726 Msa1081520:CDS
TGGAGCCATGAAATTCAATT+TGG 0.275671 7_2:+81302626 None:intergenic
TTCTCATTAAACTCTTTAAC+TGG 0.275999 7_2:+81302446 None:intergenic
GCCACCCAAATTGAATTTCA+TGG 0.289527 7_2:-81302631 Msa1081520:exon
GTTCAATCCGCTGCGCGATT+AGG 0.295554 7_2:+81302660 None:intergenic
ACTTGGTCGTCATCGGGTTC+TGG 0.304693 7_2:+81303300 None:intergenic
CAAAGAATTGTAGTAGGATT+TGG 0.316745 7_2:+81302799 None:intergenic
ATTAGGAATCAGAGTGGCTT+AGG 0.341814 7_2:-81302895 Msa1081520:intron
GAGGAGGAAGATGGCGTGAA+TGG 0.349139 7_2:+81303417 None:intergenic
AAAACTTTCCTTATAAGAAA+TGG 0.350129 7_2:+81302718 None:intergenic
TTTCATGGCTCCACATGGTT+TGG 0.362668 7_2:-81302616 Msa1081520:three_prime_UTR
GAGTGTAACGGAGGAGGAGG+AGG 0.364201 7_2:+81303398 None:intergenic
ACGAATGGCTCATATTATAT+TGG 0.370827 7_2:-81303576 Msa1081520:five_prime_UTR
ATCTCCACATTTGTTTCCTC+AGG 0.391134 7_2:+81302836 None:intergenic
GTTGAATATGGCACGTGAAT+TGG 0.399859 7_2:-81302744 Msa1081520:CDS
GTCTTCAACTTGGTCGTCAT+CGG 0.400136 7_2:+81303293 None:intergenic
GATAGAATGATGGGATGAAC+TGG 0.407971 7_2:+81303456 None:intergenic
TGTAACGGAGGAGGAGGAGG+AGG 0.411488 7_2:+81303401 None:intergenic
TCGTCATCGGGTTCTGGAAA+TGG 0.412464 7_2:+81303306 None:intergenic
GTGAAGAGGAAGCGTGTTGA+TGG 0.422901 7_2:+81303370 None:intergenic
GGTGAGTGTAACGGAGGAGG+AGG 0.437081 7_2:+81303395 None:intergenic
AGGAGGAAGATGGCGTGAAT+GGG 0.452880 7_2:+81303418 None:intergenic
AAAGTGAGTTAGGAAATTCT+AGG 0.459966 7_2:+81302545 None:intergenic
TCTTCAACTTGGTCGTCATC+GGG 0.460270 7_2:+81303294 None:intergenic
CCGTATCAAAGAATTGTAGT+AGG 0.472999 7_2:+81302793 None:intergenic
GTGGGTGAGTGTAACGGAGG+AGG 0.477449 7_2:+81303392 None:intergenic
CTACCTGGGAGGCATTGGTT+GGG 0.478796 7_2:+81303244 None:intergenic
AGTACCTACCTGGGAGGCAT+TGG 0.485202 7_2:+81303239 None:intergenic
GGTTACTTTACATAAATGGT+TGG 0.503773 7_2:-81302873 Msa1081520:CDS
GGAGCCATGAAATTCAATTT+GGG 0.504011 7_2:+81302627 None:intergenic
GAAATGGATGAGAATGTGAA+TGG 0.509383 7_2:+81303322 None:intergenic
AGAAGCAATTGCACAGGGAC+AGG 0.510296 7_2:+81303548 None:intergenic
CCTACTACAATTCTTTGATA+CGG 0.511408 7_2:-81302793 Msa1081520:CDS
CGTGAATGGGATGATGCTGC+GGG 0.519340 7_2:+81303431 None:intergenic
AAGAGGAAGCGTGTTGATGG+TGG 0.520055 7_2:+81303373 None:intergenic
TTAGGAATCAGAGTGGCTTA+GGG 0.523126 7_2:-81302894 Msa1081520:intron
ACTCCCAACCAATGCCTCCC+AGG 0.538117 7_2:-81303247 Msa1081520:intron
TAATAAAGTTTCTGAACGAA+TGG 0.541566 7_2:-81303591 Msa1081520:five_prime_UTR
AAATAAAGAAGCAATTGCAC+AGG 0.543286 7_2:+81303542 None:intergenic
CCTACCTGGGAGGCATTGGT+TGG 0.555347 7_2:+81303243 None:intergenic
GCGTGAATGGGATGATGCTG+CGG 0.561357 7_2:+81303430 None:intergenic
GAACACGAAGGTCTTCAACT+TGG 0.573094 7_2:+81303283 None:intergenic
GCCATGAAATTCAATTTGGG+TGG 0.591269 7_2:+81302630 None:intergenic
TTGAATTTCATGGCTCCACA+TGG 0.595728 7_2:-81302621 Msa1081520:exon
TGGTTGGGAGTAACCAATGA+GGG 0.597474 7_2:+81303259 None:intergenic
AGCCGCATTTGCAGATGTGT+AGG 0.600800 7_2:+81302688 None:intergenic
CTGTCCTGAGGAAACAAATG+TGG 0.608003 7_2:-81302840 Msa1081520:CDS
GCTGCGGGGAGATAGAATGA+TGG 0.616289 7_2:+81303446 None:intergenic
CTGCGGGGAGATAGAATGAT+GGG 0.626194 7_2:+81303447 None:intergenic
AGTTAGGAAATTCTAGGACA+AGG 0.631584 7_2:+81302551 None:intergenic
AGAGGAAGCGTGTTGATGGT+GGG 0.631850 7_2:+81303374 None:intergenic
ATGGTGGGTGAGTGTAACGG+AGG 0.641106 7_2:+81303389 None:intergenic
GGCCTACACATCTGCAAATG+CGG 0.641836 7_2:-81302690 Msa1081520:CDS
AAATGGATGAGAATGTGAAT+GGG 0.656050 7_2:+81303323 None:intergenic
TTGATGGTGGGTGAGTGTAA+CGG 0.662684 7_2:+81303386 None:intergenic
TTGGTTGGGAGTAACCAATG+AGG 0.663293 7_2:+81303258 None:intergenic
AATAAAGAAGCAATTGCACA+GGG 0.666063 7_2:+81303543 None:intergenic
ACAATTATTAGGAATCAGAG+TGG 0.674841 7_2:-81302901 Msa1081520:intron
CTGTAAACCTAATCGCGCAG+CGG 0.684704 7_2:-81302667 Msa1081520:CDS
GTTGGGAGTAACCAATGAGG+GGG 0.704622 7_2:+81303261 None:intergenic
GGTTGGGAGTAACCAATGAG+GGG 0.709296 7_2:+81303260 None:intergenic
GTGAATGGGATGATGCTGCG+GGG 0.710234 7_2:+81303432 None:intergenic
GGATGATGAATACTGTCCTG+AGG 0.725475 7_2:-81302852 Msa1081520:CDS
GAAAAGAGTACCTACCTGGG+AGG 0.727204 7_2:+81303233 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAACTTTATTATTTTTCT+CGG + chr7_2:81302386-81302405 None:intergenic 15.0%
!! GAATTGGTTAAATATTGTTA+AGG - chr7_2:81302835-81302854 Msa1081520:CDS 20.0%
!!! CTATTTTCTCAAATTATTAC+CGG + chr7_2:81302937-81302956 None:intergenic 20.0%
!!! TTTTTCCATTCACAATTATT+AGG - chr7_2:81303072-81303091 Msa1081520:intron 20.0%
!! AAAACTTTCCTTATAAGAAA+TGG + chr7_2:81303269-81303288 None:intergenic 20.0%
!! GAATTGGTTAAATATTGTTA+AGG - chr7_2:81302835-81302854 Msa1081520:CDS 20.0%
!!! CTATTTTCTCAAATTATTAC+CGG + chr7_2:81302937-81302956 None:intergenic 20.0%
!!! TTTTTCCATTCACAATTATT+AGG - chr7_2:81303072-81303091 Msa1081520:intron 20.0%
!! AAAACTTTCCTTATAAGAAA+TGG + chr7_2:81303269-81303288 None:intergenic 20.0%
! TAATAAAGTTTCTGAACGAA+TGG - chr7_2:81302393-81302412 Msa1081520:three_prime_UTR 25.0%
! TGATTCCTAATAATTGTGAA+TGG + chr7_2:81303080-81303099 None:intergenic 25.0%
!! TTAGGGTTACTTTACATAAA+TGG - chr7_2:81303107-81303126 Msa1081520:intron 25.0%
! ATTGGAAACCATTTCTTATA+AGG - chr7_2:81303258-81303277 Msa1081520:CDS 25.0%
!! TCTTATAAGGAAAGTTTTCA+TGG - chr7_2:81303271-81303290 Msa1081520:CDS 25.0%
!! CTTATAAGGAAAGTTTTCAT+GGG - chr7_2:81303272-81303291 Msa1081520:CDS 25.0%
!! TTATAAGGAAAGTTTTCATG+GGG - chr7_2:81303273-81303292 Msa1081520:CDS 25.0%
! TTCTCATTAAACTCTTTAAC+TGG + chr7_2:81303541-81303560 None:intergenic 25.0%
! TAATAAAGTTTCTGAACGAA+TGG - chr7_2:81302393-81302412 Msa1081520:three_prime_UTR 25.0%
! TGATTCCTAATAATTGTGAA+TGG + chr7_2:81303080-81303099 None:intergenic 25.0%
!! TTAGGGTTACTTTACATAAA+TGG - chr7_2:81303107-81303126 Msa1081520:intron 25.0%
! ATTGGAAACCATTTCTTATA+AGG - chr7_2:81303258-81303277 Msa1081520:CDS 25.0%
!! TCTTATAAGGAAAGTTTTCA+TGG - chr7_2:81303271-81303290 Msa1081520:CDS 25.0%
!! CTTATAAGGAAAGTTTTCAT+GGG - chr7_2:81303272-81303291 Msa1081520:CDS 25.0%
!! TTATAAGGAAAGTTTTCATG+GGG - chr7_2:81303273-81303292 Msa1081520:CDS 25.0%
! TTCTCATTAAACTCTTTAAC+TGG + chr7_2:81303541-81303560 None:intergenic 25.0%
ACGAATGGCTCATATTATAT+TGG - chr7_2:81302408-81302427 Msa1081520:three_prime_UTR 30.0%
AATAAAGAAGCAATTGCACA+GGG + chr7_2:81302444-81302463 None:intergenic 30.0%
AAATAAAGAAGCAATTGCAC+AGG + chr7_2:81302445-81302464 None:intergenic 30.0%
AAATGGATGAGAATGTGAAT+GGG + chr7_2:81302664-81302683 None:intergenic 30.0%
!! GCATGTTTCTAAAATTTGAG+AGG + chr7_2:81302784-81302803 None:intergenic 30.0%
TGAGATGTTCATGTTAGAAT+TGG - chr7_2:81302819-81302838 Msa1081520:CDS 30.0%
ACAATTATTAGGAATCAGAG+TGG - chr7_2:81303083-81303102 Msa1081520:intron 30.0%
! GGTTACTTTACATAAATGGT+TGG - chr7_2:81303111-81303130 Msa1081520:intron 30.0%
CAAAGAATTGTAGTAGGATT+TGG + chr7_2:81303188-81303207 None:intergenic 30.0%
CCTACTACAATTCTTTGATA+CGG - chr7_2:81303191-81303210 Msa1081520:intron 30.0%
! AGCTGACATTTTGTTGAATA+TGG - chr7_2:81303228-81303247 Msa1081520:intron 30.0%
AAAGTGAGTTAGGAAATTCT+AGG + chr7_2:81303442-81303461 None:intergenic 30.0%
!! GAATTTCCTAACTCACTTTT+TGG - chr7_2:81303443-81303462 Msa1081520:CDS 30.0%
ACGAATGGCTCATATTATAT+TGG - chr7_2:81302408-81302427 Msa1081520:three_prime_UTR 30.0%
AATAAAGAAGCAATTGCACA+GGG + chr7_2:81302444-81302463 None:intergenic 30.0%
AAATAAAGAAGCAATTGCAC+AGG + chr7_2:81302445-81302464 None:intergenic 30.0%
AAATGGATGAGAATGTGAAT+GGG + chr7_2:81302664-81302683 None:intergenic 30.0%
!! GCATGTTTCTAAAATTTGAG+AGG + chr7_2:81302784-81302803 None:intergenic 30.0%
TGAGATGTTCATGTTAGAAT+TGG - chr7_2:81302819-81302838 Msa1081520:CDS 30.0%
ACAATTATTAGGAATCAGAG+TGG - chr7_2:81303083-81303102 Msa1081520:intron 30.0%
! GGTTACTTTACATAAATGGT+TGG - chr7_2:81303111-81303130 Msa1081520:intron 30.0%
CAAAGAATTGTAGTAGGATT+TGG + chr7_2:81303188-81303207 None:intergenic 30.0%
CCTACTACAATTCTTTGATA+CGG - chr7_2:81303191-81303210 Msa1081520:intron 30.0%
! AGCTGACATTTTGTTGAATA+TGG - chr7_2:81303228-81303247 Msa1081520:intron 30.0%
AAAGTGAGTTAGGAAATTCT+AGG + chr7_2:81303442-81303461 None:intergenic 30.0%
!! GAATTTCCTAACTCACTTTT+TGG - chr7_2:81303443-81303462 Msa1081520:CDS 30.0%
!! TATTTTTCTAGTCGAGCAAG+CGG - chr7_2:81302460-81302479 Msa1081520:three_prime_UTR 35.0%
!!! GTGAACAATTTTTGGTGAAG+AGG + chr7_2:81302631-81302650 None:intergenic 35.0%
! CGAGTAGTGTGAACAATTTT+TGG + chr7_2:81302639-81302658 None:intergenic 35.0%
GAAATGGATGAGAATGTGAA+TGG + chr7_2:81302665-81302684 None:intergenic 35.0%
!! AATGAAAAGAGTACCTACCT+GGG + chr7_2:81302757-81302776 None:intergenic 35.0%
ATGAAGATATAAATGAGCGC+AGG + chr7_2:81303043-81303062 None:intergenic 35.0%
CCGTATCAAAGAATTGTAGT+AGG + chr7_2:81303194-81303213 None:intergenic 35.0%
GGAGCCATGAAATTCAATTT+GGG + chr7_2:81303360-81303379 None:intergenic 35.0%
TGGAGCCATGAAATTCAATT+TGG + chr7_2:81303361-81303380 None:intergenic 35.0%
AGTGAAAAAACCAAACCATG+TGG + chr7_2:81303381-81303400 None:intergenic 35.0%
!! AGTTAGGAAATTCTAGGACA+AGG + chr7_2:81303436-81303455 None:intergenic 35.0%
!! TATTTTTCTAGTCGAGCAAG+CGG - chr7_2:81302460-81302479 Msa1081520:three_prime_UTR 35.0%
!!! GTGAACAATTTTTGGTGAAG+AGG + chr7_2:81302631-81302650 None:intergenic 35.0%
! CGAGTAGTGTGAACAATTTT+TGG + chr7_2:81302639-81302658 None:intergenic 35.0%
GAAATGGATGAGAATGTGAA+TGG + chr7_2:81302665-81302684 None:intergenic 35.0%
!! AATGAAAAGAGTACCTACCT+GGG + chr7_2:81302757-81302776 None:intergenic 35.0%
ATGAAGATATAAATGAGCGC+AGG + chr7_2:81303043-81303062 None:intergenic 35.0%
CCGTATCAAAGAATTGTAGT+AGG + chr7_2:81303194-81303213 None:intergenic 35.0%
GGAGCCATGAAATTCAATTT+GGG + chr7_2:81303360-81303379 None:intergenic 35.0%
TGGAGCCATGAAATTCAATT+TGG + chr7_2:81303361-81303380 None:intergenic 35.0%
AGTGAAAAAACCAAACCATG+TGG + chr7_2:81303381-81303400 None:intergenic 35.0%
!! AGTTAGGAAATTCTAGGACA+AGG + chr7_2:81303436-81303455 None:intergenic 35.0%
! GATAGAATGATGGGATGAAC+TGG + chr7_2:81302531-81302550 None:intergenic 40.0%
!! GAATGAAAAGAGTACCTACC+TGG + chr7_2:81302758-81302777 None:intergenic 40.0%
ATTTCAACACCGAAAGGACA+CGG + chr7_2:81302985-81303004 None:intergenic 40.0%
CTAGTGATTTCAACACCGAA+AGG + chr7_2:81302991-81303010 None:intergenic 40.0%
!! CTTTCGGTGTTGAAATCACT+AGG - chr7_2:81302989-81303008 Msa1081520:intron 40.0%
GTTGAAATCACTAGGTGGTT+AGG - chr7_2:81302997-81303016 Msa1081520:intron 40.0%
ATTAGGAATCAGAGTGGCTT+AGG - chr7_2:81303089-81303108 Msa1081520:intron 40.0%
TTAGGAATCAGAGTGGCTTA+GGG - chr7_2:81303090-81303109 Msa1081520:intron 40.0%
ATCTCCACATTTGTTTCCTC+AGG + chr7_2:81303151-81303170 None:intergenic 40.0%
GTTGAATATGGCACGTGAAT+TGG - chr7_2:81303240-81303259 Msa1081520:intron 40.0%
GCCACCCAAATTGAATTTCA+TGG - chr7_2:81303353-81303372 Msa1081520:CDS 40.0%
GCCATGAAATTCAATTTGGG+TGG + chr7_2:81303357-81303376 None:intergenic 40.0%
TTGAATTTCATGGCTCCACA+TGG - chr7_2:81303363-81303382 Msa1081520:CDS 40.0%
GAGTCACCAAAAAGTGAGTT+AGG + chr7_2:81303452-81303471 None:intergenic 40.0%
! GATAGAATGATGGGATGAAC+TGG + chr7_2:81302531-81302550 None:intergenic 40.0%
!! GAATGAAAAGAGTACCTACC+TGG + chr7_2:81302758-81302777 None:intergenic 40.0%
ATTTCAACACCGAAAGGACA+CGG + chr7_2:81302985-81303004 None:intergenic 40.0%
CTAGTGATTTCAACACCGAA+AGG + chr7_2:81302991-81303010 None:intergenic 40.0%
!! CTTTCGGTGTTGAAATCACT+AGG - chr7_2:81302989-81303008 Msa1081520:intron 40.0%
GTTGAAATCACTAGGTGGTT+AGG - chr7_2:81302997-81303016 Msa1081520:intron 40.0%
ATTAGGAATCAGAGTGGCTT+AGG - chr7_2:81303089-81303108 Msa1081520:intron 40.0%
TTAGGAATCAGAGTGGCTTA+GGG - chr7_2:81303090-81303109 Msa1081520:intron 40.0%
ATCTCCACATTTGTTTCCTC+AGG + chr7_2:81303151-81303170 None:intergenic 40.0%
GTTGAATATGGCACGTGAAT+TGG - chr7_2:81303240-81303259 Msa1081520:intron 40.0%
GCCACCCAAATTGAATTTCA+TGG - chr7_2:81303353-81303372 Msa1081520:CDS 40.0%
GCCATGAAATTCAATTTGGG+TGG + chr7_2:81303357-81303376 None:intergenic 40.0%
TTGAATTTCATGGCTCCACA+TGG - chr7_2:81303363-81303382 Msa1081520:CDS 40.0%
GAGTCACCAAAAAGTGAGTT+AGG + chr7_2:81303452-81303471 None:intergenic 40.0%
!! TTGATGGTGGGTGAGTGTAA+CGG + chr7_2:81302601-81302620 None:intergenic 45.0%
TCTTCAACTTGGTCGTCATC+GGG + chr7_2:81302693-81302712 None:intergenic 45.0%
GTCTTCAACTTGGTCGTCAT+CGG + chr7_2:81302694-81302713 None:intergenic 45.0%
GAACACGAAGGTCTTCAACT+TGG + chr7_2:81302704-81302723 None:intergenic 45.0%
TGGTTGGGAGTAACCAATGA+GGG + chr7_2:81302728-81302747 None:intergenic 45.0%
TTGGTTGGGAGTAACCAATG+AGG + chr7_2:81302729-81302748 None:intergenic 45.0%
! TAGTTAGCTTAGACCGACGA+AGG - chr7_2:81302900-81302919 Msa1081520:intron 45.0%
!! TCGGTGTTGAAATCACTAGG+TGG - chr7_2:81302992-81303011 Msa1081520:intron 45.0%
GGATGATGAATACTGTCCTG+AGG - chr7_2:81303132-81303151 Msa1081520:intron 45.0%
CTGTCCTGAGGAAACAAATG+TGG - chr7_2:81303144-81303163 Msa1081520:intron 45.0%
TTTCATGGCTCCACATGGTT+TGG - chr7_2:81303368-81303387 Msa1081520:CDS 45.0%
!! TTGATGGTGGGTGAGTGTAA+CGG + chr7_2:81302601-81302620 None:intergenic 45.0%
TCTTCAACTTGGTCGTCATC+GGG + chr7_2:81302693-81302712 None:intergenic 45.0%
GTCTTCAACTTGGTCGTCAT+CGG + chr7_2:81302694-81302713 None:intergenic 45.0%
GAACACGAAGGTCTTCAACT+TGG + chr7_2:81302704-81302723 None:intergenic 45.0%
TGGTTGGGAGTAACCAATGA+GGG + chr7_2:81302728-81302747 None:intergenic 45.0%
TTGGTTGGGAGTAACCAATG+AGG + chr7_2:81302729-81302748 None:intergenic 45.0%
! TAGTTAGCTTAGACCGACGA+AGG - chr7_2:81302900-81302919 Msa1081520:intron 45.0%
!! TCGGTGTTGAAATCACTAGG+TGG - chr7_2:81302992-81303011 Msa1081520:intron 45.0%
GGATGATGAATACTGTCCTG+AGG - chr7_2:81303132-81303151 Msa1081520:intron 45.0%
CTGTCCTGAGGAAACAAATG+TGG - chr7_2:81303144-81303163 Msa1081520:intron 45.0%
TTTCATGGCTCCACATGGTT+TGG - chr7_2:81303368-81303387 Msa1081520:CDS 45.0%
AGAAGCAATTGCACAGGGAC+AGG + chr7_2:81302439-81302458 None:intergenic 50.0%
CTGCGGGGAGATAGAATGAT+GGG + chr7_2:81302540-81302559 None:intergenic 50.0%
AGGAGGAAGATGGCGTGAAT+GGG + chr7_2:81302569-81302588 None:intergenic 50.0%
!! AGAGGAAGCGTGTTGATGGT+GGG + chr7_2:81302613-81302632 None:intergenic 50.0%
! AAGAGGAAGCGTGTTGATGG+TGG + chr7_2:81302614-81302633 None:intergenic 50.0%
! GTGAAGAGGAAGCGTGTTGA+TGG + chr7_2:81302617-81302636 None:intergenic 50.0%
!! TCGTCATCGGGTTCTGGAAA+TGG + chr7_2:81302681-81302700 None:intergenic 50.0%
GTTGGGAGTAACCAATGAGG+GGG + chr7_2:81302726-81302745 None:intergenic 50.0%
GGTTGGGAGTAACCAATGAG+GGG + chr7_2:81302727-81302746 None:intergenic 50.0%
!! GAAAAGAGTACCTACCTGGG+AGG + chr7_2:81302754-81302773 None:intergenic 50.0%
CACATGTGTCCGTGTCCTTT+CGG - chr7_2:81302973-81302992 Msa1081520:intron 50.0%
GGCCTACACATCTGCAAATG+CGG - chr7_2:81303294-81303313 Msa1081520:CDS 50.0%
AGCCGCATTTGCAGATGTGT+AGG + chr7_2:81303299-81303318 None:intergenic 50.0%
CTGTAAACCTAATCGCGCAG+CGG - chr7_2:81303317-81303336 Msa1081520:CDS 50.0%
AGAAGCAATTGCACAGGGAC+AGG + chr7_2:81302439-81302458 None:intergenic 50.0%
CTGCGGGGAGATAGAATGAT+GGG + chr7_2:81302540-81302559 None:intergenic 50.0%
AGGAGGAAGATGGCGTGAAT+GGG + chr7_2:81302569-81302588 None:intergenic 50.0%
!! AGAGGAAGCGTGTTGATGGT+GGG + chr7_2:81302613-81302632 None:intergenic 50.0%
! AAGAGGAAGCGTGTTGATGG+TGG + chr7_2:81302614-81302633 None:intergenic 50.0%
! GTGAAGAGGAAGCGTGTTGA+TGG + chr7_2:81302617-81302636 None:intergenic 50.0%
!! TCGTCATCGGGTTCTGGAAA+TGG + chr7_2:81302681-81302700 None:intergenic 50.0%
GTTGGGAGTAACCAATGAGG+GGG + chr7_2:81302726-81302745 None:intergenic 50.0%
GGTTGGGAGTAACCAATGAG+GGG + chr7_2:81302727-81302746 None:intergenic 50.0%
!! GAAAAGAGTACCTACCTGGG+AGG + chr7_2:81302754-81302773 None:intergenic 50.0%
CACATGTGTCCGTGTCCTTT+CGG - chr7_2:81302973-81302992 Msa1081520:intron 50.0%
GGCCTACACATCTGCAAATG+CGG - chr7_2:81303294-81303313 Msa1081520:CDS 50.0%
AGCCGCATTTGCAGATGTGT+AGG + chr7_2:81303299-81303318 None:intergenic 50.0%
CTGTAAACCTAATCGCGCAG+CGG - chr7_2:81303317-81303336 Msa1081520:CDS 50.0%
GCTGCGGGGAGATAGAATGA+TGG + chr7_2:81302541-81302560 None:intergenic 55.0%
GTGAATGGGATGATGCTGCG+GGG + chr7_2:81302555-81302574 None:intergenic 55.0%
CGTGAATGGGATGATGCTGC+GGG + chr7_2:81302556-81302575 None:intergenic 55.0%
GCGTGAATGGGATGATGCTG+CGG + chr7_2:81302557-81302576 None:intergenic 55.0%
GAGGAGGAAGATGGCGTGAA+TGG + chr7_2:81302570-81302589 None:intergenic 55.0%
!! ATGGTGGGTGAGTGTAACGG+AGG + chr7_2:81302598-81302617 None:intergenic 55.0%
ACTTGGTCGTCATCGGGTTC+TGG + chr7_2:81302687-81302706 None:intergenic 55.0%
ACCTTCGTGTTCCCCCTCAT+TGG - chr7_2:81302712-81302731 Msa1081520:CDS 55.0%
ACCAATGAGGGGGAACACGA+AGG + chr7_2:81302716-81302735 None:intergenic 55.0%
!! CTACCTGGGAGGCATTGGTT+GGG + chr7_2:81302743-81302762 None:intergenic 55.0%
! AGTACCTACCTGGGAGGCAT+TGG + chr7_2:81302748-81302767 None:intergenic 55.0%
!! GGTGTTGACGTGTCCTTCGT+CGG + chr7_2:81302916-81302935 None:intergenic 55.0%
GACGAAGGACACGTCAACAC+CGG - chr7_2:81302915-81302934 Msa1081520:intron 55.0%
GTTCAATCCGCTGCGCGATT+AGG + chr7_2:81303327-81303346 None:intergenic 55.0%
GCTGCGGGGAGATAGAATGA+TGG + chr7_2:81302541-81302560 None:intergenic 55.0%
GTGAATGGGATGATGCTGCG+GGG + chr7_2:81302555-81302574 None:intergenic 55.0%
CGTGAATGGGATGATGCTGC+GGG + chr7_2:81302556-81302575 None:intergenic 55.0%
GCGTGAATGGGATGATGCTG+CGG + chr7_2:81302557-81302576 None:intergenic 55.0%
GAGGAGGAAGATGGCGTGAA+TGG + chr7_2:81302570-81302589 None:intergenic 55.0%
!! ATGGTGGGTGAGTGTAACGG+AGG + chr7_2:81302598-81302617 None:intergenic 55.0%
ACTTGGTCGTCATCGGGTTC+TGG + chr7_2:81302687-81302706 None:intergenic 55.0%
ACCTTCGTGTTCCCCCTCAT+TGG - chr7_2:81302712-81302731 Msa1081520:CDS 55.0%
ACCAATGAGGGGGAACACGA+AGG + chr7_2:81302716-81302735 None:intergenic 55.0%
!! CTACCTGGGAGGCATTGGTT+GGG + chr7_2:81302743-81302762 None:intergenic 55.0%
! AGTACCTACCTGGGAGGCAT+TGG + chr7_2:81302748-81302767 None:intergenic 55.0%
!! GGTGTTGACGTGTCCTTCGT+CGG + chr7_2:81302916-81302935 None:intergenic 55.0%
GACGAAGGACACGTCAACAC+CGG - chr7_2:81302915-81302934 Msa1081520:intron 55.0%
GTTCAATCCGCTGCGCGATT+AGG + chr7_2:81303327-81303346 None:intergenic 55.0%
GAGGAGGAGGAGGAGGAAGA+TGG + chr7_2:81302579-81302598 None:intergenic 60.0%
! TGTAACGGAGGAGGAGGAGG+AGG + chr7_2:81302586-81302605 None:intergenic 60.0%
! GAGTGTAACGGAGGAGGAGG+AGG + chr7_2:81302589-81302608 None:intergenic 60.0%
! GGTGAGTGTAACGGAGGAGG+AGG + chr7_2:81302592-81302611 None:intergenic 60.0%
! GTGGGTGAGTGTAACGGAGG+AGG + chr7_2:81302595-81302614 None:intergenic 60.0%
ACTCCCAACCAATGCCTCCC+AGG - chr7_2:81302737-81302756 Msa1081520:CDS 60.0%
!! CCTACCTGGGAGGCATTGGT+TGG + chr7_2:81302744-81302763 None:intergenic 60.0%
CCAACCAATGCCTCCCAGGT+AGG - chr7_2:81302741-81302760 Msa1081520:CDS 60.0%
GAGGAGGAGGAGGAGGAAGA+TGG + chr7_2:81302579-81302598 None:intergenic 60.0%
! TGTAACGGAGGAGGAGGAGG+AGG + chr7_2:81302586-81302605 None:intergenic 60.0%
! GAGTGTAACGGAGGAGGAGG+AGG + chr7_2:81302589-81302608 None:intergenic 60.0%
! GGTGAGTGTAACGGAGGAGG+AGG + chr7_2:81302592-81302611 None:intergenic 60.0%
! GTGGGTGAGTGTAACGGAGG+AGG + chr7_2:81302595-81302614 None:intergenic 60.0%
ACTCCCAACCAATGCCTCCC+AGG - chr7_2:81302737-81302756 Msa1081520:CDS 60.0%
!! CCTACCTGGGAGGCATTGGT+TGG + chr7_2:81302744-81302763 None:intergenic 60.0%
CCAACCAATGCCTCCCAGGT+AGG - chr7_2:81302741-81302760 Msa1081520:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81302386 81303620 81302386 ID=Msa1081520;Name=Msa1081520
chr7_2 mRNA 81302386 81303620 81302386 ID=Msa1081520-mRNA-1;Parent=Msa1081520;Name=Msa1081520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|2|254|174
chr7_2 exon 81302386 81302912 81302386 ID=Msa1081520-mRNA-1:exon:20819;Parent=Msa1081520-mRNA-1
chr7_2 exon 81303248 81303620 81303248 ID=Msa1081520-mRNA-1:exon:20818;Parent=Msa1081520-mRNA-1
chr7_2 five_prime_UTR 81303500 81303620 81303500 ID=Msa1081520-mRNA-1:five_prime_utr;Parent=Msa1081520-mRNA-1
chr7_2 CDS 81303248 81303499 81303248 ID=Msa1081520-mRNA-1:cds;Parent=Msa1081520-mRNA-1
chr7_2 CDS 81302640 81302912 81302640 ID=Msa1081520-mRNA-1:cds;Parent=Msa1081520-mRNA-1
chr7_2 three_prime_UTR 81302386 81302639 81302386 ID=Msa1081520-mRNA-1:three_prime_utr;Parent=Msa1081520-mRNA-1
Gene Sequence

>Msa1081520

ATGTCAAGCTTGAAATTGAATCCAGTTCATCCCATCATTCTATCTCCCCGCAGCATCATCCCATTCACGCCATCTTCCTCCTCCTCCTCCTCCGTTACACTCACCCACCATCAACACGCTTCCTCTTCACCAAAAATTGTTCACACTACTCGTACCCATTCACATTCTCATCCATTTCCAGAACCCGATGACGACCAAGTTGAAGACCTTCGTGTTCCCCCTCATTGGTTACTCCCAACCAATGCCTCCCAGGAATCAGAGTGGCTTAGGGTTACTTTACATAAATGGTTGGATGATGAATACTGTCCTGAGGAAACAAATGTGGAGATAAGCAGAGTTGCTGCCAAATCCTACTACAATTCTTTGATACGGAAACAAGCTGATTTAGCTGACATTTTGTTGAATATGGCACGTGAATTGGAAACCATTTCTTATAAGGAAAGTTTTCATGGGGCCTACACATCTGCAAATGCGGCTGTAAACCTAATCGCGCAGCGGATTGAACAATTCTGCCACCCAAATTGA

Protein sequence

>Msa1081520

MSSLKLNPVHPIILSPRSIIPFTPSSSSSSSVTLTHHQHASSSPKIVHTTRTHSHSHPFPEPDDDQVEDLRVPPHWLLPTNASQESEWLRVTLHKWLDDEYCPEETNVEISRVAAKSYYNSLIRKQADLADILLNMARELETISYKESFHGAYTSANAAVNLIAQRIEQFCHPN*