AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0757110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757110 MtrunA17_Chr5g0402391 95.652 184 5 2 1 182 1 183 2.50e-124 347
Msa0757110 MtrunA17_Chr8g0374981 38.983 177 97 4 8 181 6 174 1.12e-25 97.1
Msa0757110 MtrunA17_Chr7g0237211 31.795 195 101 7 5 180 25 206 1.17e-18 79.7
Msa0757110 MtrunA17_Chr7g0237171 32.143 196 96 7 5 178 65 245 2.62e-15 71.6
Msa0757110 MtrunA17_Chr4g0045111 61.905 42 16 0 139 180 111 152 2.24e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757110 AT1G49620.1 71.739 46 13 0 137 182 150 195 2.06e-18 79.0
Msa0757110 AT1G49620.3 71.739 46 13 0 137 182 155 200 2.18e-18 79.3
Msa0757110 AT5G48820.1 30.233 215 108 8 1 182 17 222 1.34e-16 74.7
Msa0757110 AT5G48820.2 63.830 47 17 0 136 182 194 240 2.59e-16 74.3
Msa0757110 AT3G24810.1 36.364 88 42 2 95 182 116 189 2.00e-12 63.2

Find 71 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTGTATAGATTTAATATT+TGG 0.143028 5_2:-11832570 Msa0757110:three_prime_UTR
GGGATGTGGTGGGTTATTTA+TGG 0.174091 5_2:-11832549 Msa0757110:three_prime_UTR
AATGTTATTGTTAACGTTCA+TGG 0.256129 5_2:+11832730 None:intergenic
CTGCAGACTGCGTTTGCGTT+TGG 0.306961 5_2:+11834336 None:intergenic
TCGTTGGTTCGTTCTTTGAA+TGG 0.337118 5_2:-11832504 Msa0757110:three_prime_UTR
GAGATTTCTTCTCAGGTTGT+AGG 0.348310 5_2:-11833875 Msa0757110:CDS
CTTCTCAGGTTGTAGGTGTC+AGG 0.365163 5_2:-11833868 Msa0757110:CDS
ATCAATGGAGATTTCTTCTC+AGG 0.379055 5_2:-11833882 Msa0757110:exon
CGTTGGTTCGTTCTTTGAAT+GGG 0.382563 5_2:-11832503 Msa0757110:three_prime_UTR
AGTGTATAGATTTAATATTT+GGG 0.387507 5_2:-11832569 Msa0757110:three_prime_UTR
GACACGTCGTTGTAACTAAC+GGG 0.389369 5_2:+11834239 None:intergenic
GGATCCATTGCTTGAACAAC+AGG 0.405756 5_2:+11833673 None:intergenic
TTCAAACGAGTTTGAGTCAA+TGG 0.407914 5_2:-11833011 Msa0757110:CDS
TCGCTGAATTTCATCATCAA+TGG 0.423818 5_2:-11833897 Msa0757110:exon
GGAAAATTATGAAGGGATCA+TGG 0.430084 5_2:+11834428 None:intergenic
TTGCAAGTGGAAAATTATGA+AGG 0.432757 5_2:+11834420 None:intergenic
GCCGACGATTCTTCCTCAAC+TGG 0.440359 5_2:-11833747 Msa0757110:CDS
AGAAATTGAACGGTTAGGAT+TGG 0.454247 5_2:+11834107 None:intergenic
TCCCTTGTTTAATCAGATAA+CGG 0.456647 5_2:-11834214 Msa0757110:five_prime_UTR
GAAAATTATGAAGGGATCAT+GGG 0.462110 5_2:+11834429 None:intergenic
ATAGGAATGGGAAGAGGATG+AGG 0.467161 5_2:+11834294 None:intergenic
GATTCTTCCTCAACTGGAAA+AGG 0.467164 5_2:-11833741 Msa0757110:CDS
TGATAAGAAATTGAACGGTT+AGG 0.471693 5_2:+11834102 None:intergenic
AAAGATTAAGGTAGTTTCGT+TGG 0.472995 5_2:-11832520 Msa0757110:three_prime_UTR
ATTTAATATTTGGGATGTGG+TGG 0.487137 5_2:-11832560 Msa0757110:three_prime_UTR
CAGTCTCCGTTAATAGTGAC+GGG 0.487784 5_2:+11834162 None:intergenic
CGCTCAAGCTGCATTAGCCA+TGG 0.498701 5_2:-11833840 Msa0757110:CDS
GTTGGAATAGGAATGGGAAG+AGG 0.501706 5_2:+11834288 None:intergenic
CGCCGTTATCTGATTAAACA+AGG 0.505496 5_2:+11834212 None:intergenic
GATGAAATTCAGCGAAGTAC+GGG 0.509147 5_2:+11833905 None:intergenic
TCTCAAAACGGGGAATTTGA+CGG 0.510894 5_2:+11834189 None:intergenic
TTGATAACGCGCGTGGAGTA+CGG 0.517751 5_2:+11834060 None:intergenic
CACTCGTAGCGTCCTTCCAA+TGG 0.522068 5_2:+11832766 None:intergenic
CCAGTCTCCGTTAATAGTGA+CGG 0.523295 5_2:+11834161 None:intergenic
TAGATTTAATATTTGGGATG+TGG 0.523492 5_2:-11832563 Msa0757110:three_prime_UTR
TGATGAAATTCAGCGAAGTA+CGG 0.524846 5_2:+11833904 None:intergenic
CCGTTCAACTCGATGAAGAA+AGG 0.525470 5_2:-11833652 Msa0757110:CDS
TTTAATATTTGGGATGTGGT+GGG 0.527047 5_2:-11832559 Msa0757110:three_prime_UTR
CCTTTCTTCATCGAGTTGAA+CGG 0.528328 5_2:+11833652 None:intergenic
CCGTCACTATTAACGGAGAC+TGG 0.530529 5_2:-11834161 Msa0757110:five_prime_UTR
GTGAAGGATGTTCCATTGGA+AGG 0.536178 5_2:-11832778 Msa0757110:CDS
TCCAGTTGAGGAAGAATCGT+CGG 0.551036 5_2:+11833746 None:intergenic
TCTTCAAGCTCAAATTCCGT+TGG 0.553314 5_2:+11832947 None:intergenic
GCGTCCTGTTGTTCAAGCAA+TGG 0.555643 5_2:-11833677 Msa0757110:CDS
TGCAAGTGGAAAATTATGAA+GGG 0.556850 5_2:+11834421 None:intergenic
TTACTATTCACACCTCACTC+TGG 0.568694 5_2:+11833949 None:intergenic
TATTGTGAAGGATGTTCCAT+TGG 0.578054 5_2:-11832782 Msa0757110:CDS
TCTTCCTCAACTGGAAAAGG+AGG 0.580715 5_2:-11833738 Msa0757110:CDS
TTGGAATTTACATACAACAA+AGG 0.586695 5_2:+11834385 None:intergenic
GATCAAATCGTTAGATCTAG+AGG 0.589450 5_2:-11833630 Msa0757110:intron
TGACACGTCGTTGTAACTAA+CGG 0.593876 5_2:+11834238 None:intergenic
GAAACGCGATTATTTGCAAG+TGG 0.593999 5_2:+11834407 None:intergenic
CATTGGAAGGACGCTACGAG+TGG 0.598974 5_2:-11832765 Msa0757110:CDS
TTCTTCATCGGAGATATCAC+CGG 0.604193 5_2:+11833706 None:intergenic
TGAAGTTGTAGCTTCATCCA+TGG 0.608270 5_2:+11833823 None:intergenic
ATTGCTTGAACAACAGGACG+CGG 0.618562 5_2:+11833679 None:intergenic
ACAGTGAAGAAGAATTTCAG+AGG 0.627175 5_2:-11833393 Msa0757110:intron
GGACGCGGGAAATTCTTCAT+CGG 0.641501 5_2:+11833694 None:intergenic
GAGAGTGTTGATAACGCGCG+TGG 0.646351 5_2:+11834053 None:intergenic
TGTGATGATAAGAAATTGAA+CGG 0.647986 5_2:+11834097 None:intergenic
TTGCTTGAACAACAGGACGC+GGG 0.649814 5_2:+11833680 None:intergenic
TTCATCGGAGATATCACCGG+AGG 0.654993 5_2:+11833709 None:intergenic
ATTGGAAGGACGCTACGAGT+GGG 0.655621 5_2:-11832764 Msa0757110:CDS
ACACCTGAAAAGCCAGAGTG+AGG 0.658166 5_2:-11833961 Msa0757110:five_prime_UTR
GTATAATTATGATATTGTGA+AGG 0.659384 5_2:-11832794 Msa0757110:CDS
AAAATTATGAAGGGATCATG+GGG 0.661542 5_2:+11834430 None:intergenic
GTCTCCGTTAATAGTGACGG+GGG 0.678897 5_2:+11834164 None:intergenic
ACACGTCGTTGTAACTAACG+GGG 0.680569 5_2:+11834240 None:intergenic
GCCGTTATCTGATTAAACAA+GGG 0.689324 5_2:+11834213 None:intergenic
AGTCTCCGTTAATAGTGACG+GGG 0.697219 5_2:+11834163 None:intergenic
CACGTCGTTGTAACTAACGG+GGG 0.714208 5_2:+11834241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTACTATTTTAGTTT+AGG - chr5_2:11834249-11834268 Msa0757110:five_prime_UTR 15.0%
!! TAGTGTATAGATTTAATATT+TGG - chr5_2:11834333-11834352 Msa0757110:five_prime_UTR 15.0%
!! AGTGTATAGATTTAATATTT+GGG - chr5_2:11834334-11834353 Msa0757110:five_prime_UTR 15.0%
!!! TTTTCTTACTATTTTAGTTT+AGG - chr5_2:11834249-11834268 Msa0757110:five_prime_UTR 15.0%
!! TAGTGTATAGATTTAATATT+TGG - chr5_2:11834333-11834352 Msa0757110:five_prime_UTR 15.0%
!! AGTGTATAGATTTAATATTT+GGG - chr5_2:11834334-11834353 Msa0757110:five_prime_UTR 15.0%
!!! TTTGAAATTTGAATTTGCTT+TGG - chr5_2:11833535-11833554 Msa0757110:intron 20.0%
!!! TTAGTTATAGTTTTTGAGTT+AGG - chr5_2:11833568-11833587 Msa0757110:intron 20.0%
!!! ATATTTTTTGGAGAAGAAAT+CGG + chr5_2:11833935-11833954 None:intergenic 20.0%
!! GTATAATTATGATATTGTGA+AGG - chr5_2:11834109-11834128 Msa0757110:five_prime_UTR 20.0%
!! TTATGGAAGAAAAAAGATTA+AGG - chr5_2:11834371-11834390 Msa0757110:five_prime_UTR 20.0%
!!! TTTGAAATTTGAATTTGCTT+TGG - chr5_2:11833535-11833554 Msa0757110:intron 20.0%
!!! TTAGTTATAGTTTTTGAGTT+AGG - chr5_2:11833568-11833587 Msa0757110:intron 20.0%
!!! ATATTTTTTGGAGAAGAAAT+CGG + chr5_2:11833935-11833954 None:intergenic 20.0%
!! GTATAATTATGATATTGTGA+AGG - chr5_2:11834109-11834128 Msa0757110:five_prime_UTR 20.0%
!! TTATGGAAGAAAAAAGATTA+AGG - chr5_2:11834371-11834390 Msa0757110:five_prime_UTR 20.0%
! TTGGAATTTACATACAACAA+AGG + chr5_2:11832521-11832540 None:intergenic 25.0%
! TGTGATGATAAGAAATTGAA+CGG + chr5_2:11832809-11832828 None:intergenic 25.0%
!!! TTTCTTCTCTTTGAAGTTTT+TGG + chr5_2:11833109-11833128 None:intergenic 25.0%
! CTGAAATGAACAATTTAATG+CGG - chr5_2:11833325-11833344 Msa0757110:intron 25.0%
! CATTAAACGTTTCTATTTAC+AGG - chr5_2:11833451-11833470 Msa0757110:intron 25.0%
! AATGTTATTGTTAACGTTCA+TGG + chr5_2:11834176-11834195 None:intergenic 25.0%
!! TAGATTTAATATTTGGGATG+TGG - chr5_2:11834340-11834359 Msa0757110:five_prime_UTR 25.0%
! TTGGAATTTACATACAACAA+AGG + chr5_2:11832521-11832540 None:intergenic 25.0%
! TGTGATGATAAGAAATTGAA+CGG + chr5_2:11832809-11832828 None:intergenic 25.0%
!!! TTTCTTCTCTTTGAAGTTTT+TGG + chr5_2:11833109-11833128 None:intergenic 25.0%
! CTGAAATGAACAATTTAATG+CGG - chr5_2:11833325-11833344 Msa0757110:intron 25.0%
! CATTAAACGTTTCTATTTAC+AGG - chr5_2:11833451-11833470 Msa0757110:intron 25.0%
! AATGTTATTGTTAACGTTCA+TGG + chr5_2:11834176-11834195 None:intergenic 25.0%
!! TAGATTTAATATTTGGGATG+TGG - chr5_2:11834340-11834359 Msa0757110:five_prime_UTR 25.0%
AAAATTATGAAGGGATCATG+GGG + chr5_2:11832476-11832495 None:intergenic 30.0%
GAAAATTATGAAGGGATCAT+GGG + chr5_2:11832477-11832496 None:intergenic 30.0%
TGCAAGTGGAAAATTATGAA+GGG + chr5_2:11832485-11832504 None:intergenic 30.0%
TTGCAAGTGGAAAATTATGA+AGG + chr5_2:11832486-11832505 None:intergenic 30.0%
!! TGTTTTGTTGGAATAGGAAT+GGG + chr5_2:11832624-11832643 None:intergenic 30.0%
! TCCCTTGTTTAATCAGATAA+CGG - chr5_2:11832689-11832708 Msa0757110:three_prime_UTR 30.0%
TGATAAGAAATTGAACGGTT+AGG + chr5_2:11832804-11832823 None:intergenic 30.0%
ATAGAAACGTTTAATGCGTT+AGG + chr5_2:11833447-11833466 None:intergenic 30.0%
TAAACGTTTCTATTTACAGG+TGG - chr5_2:11833454-11833473 Msa0757110:intron 30.0%
! TCAGTTACTACGATTTTGAA+CGG + chr5_2:11833753-11833772 None:intergenic 30.0%
! ACAGAATATTTTGTGAGTGT+AGG - chr5_2:11833855-11833874 Msa0757110:CDS 30.0%
TTCTCCAAAAAATATGCCAA+CGG - chr5_2:11833940-11833959 Msa0757110:five_prime_UTR 30.0%
!!! AATTCCGTTGGCATATTTTT+TGG + chr5_2:11833947-11833966 None:intergenic 30.0%
! TTCTTGAAGAATGATTTTGC+AGG - chr5_2:11834087-11834106 Msa0757110:five_prime_UTR 30.0%
AAGAAAAAATGTCAGCAAAG+TGG + chr5_2:11834236-11834255 None:intergenic 30.0%
! ATTTAATATTTGGGATGTGG+TGG - chr5_2:11834343-11834362 Msa0757110:five_prime_UTR 30.0%
! TTTAATATTTGGGATGTGGT+GGG - chr5_2:11834344-11834363 Msa0757110:five_prime_UTR 30.0%
AAAGATTAAGGTAGTTTCGT+TGG - chr5_2:11834383-11834402 Msa0757110:five_prime_UTR 30.0%
TCATCATCATCATGTATTTG+CGG + chr5_2:11832438-11832457 None:intergenic 30.0%
AAAATTATGAAGGGATCATG+GGG + chr5_2:11832476-11832495 None:intergenic 30.0%
GAAAATTATGAAGGGATCAT+GGG + chr5_2:11832477-11832496 None:intergenic 30.0%
TGCAAGTGGAAAATTATGAA+GGG + chr5_2:11832485-11832504 None:intergenic 30.0%
TTGCAAGTGGAAAATTATGA+AGG + chr5_2:11832486-11832505 None:intergenic 30.0%
!! TGTTTTGTTGGAATAGGAAT+GGG + chr5_2:11832624-11832643 None:intergenic 30.0%
! TCCCTTGTTTAATCAGATAA+CGG - chr5_2:11832689-11832708 Msa0757110:three_prime_UTR 30.0%
TGATAAGAAATTGAACGGTT+AGG + chr5_2:11832804-11832823 None:intergenic 30.0%
ATAGAAACGTTTAATGCGTT+AGG + chr5_2:11833447-11833466 None:intergenic 30.0%
TAAACGTTTCTATTTACAGG+TGG - chr5_2:11833454-11833473 Msa0757110:intron 30.0%
! TCAGTTACTACGATTTTGAA+CGG + chr5_2:11833753-11833772 None:intergenic 30.0%
! ACAGAATATTTTGTGAGTGT+AGG - chr5_2:11833855-11833874 Msa0757110:CDS 30.0%
TTCTCCAAAAAATATGCCAA+CGG - chr5_2:11833940-11833959 Msa0757110:five_prime_UTR 30.0%
!!! AATTCCGTTGGCATATTTTT+TGG + chr5_2:11833947-11833966 None:intergenic 30.0%
! TTCTTGAAGAATGATTTTGC+AGG - chr5_2:11834087-11834106 Msa0757110:five_prime_UTR 30.0%
AAGAAAAAATGTCAGCAAAG+TGG + chr5_2:11834236-11834255 None:intergenic 30.0%
! ATTTAATATTTGGGATGTGG+TGG - chr5_2:11834343-11834362 Msa0757110:five_prime_UTR 30.0%
! TTTAATATTTGGGATGTGGT+GGG - chr5_2:11834344-11834363 Msa0757110:five_prime_UTR 30.0%
AAAGATTAAGGTAGTTTCGT+TGG - chr5_2:11834383-11834402 Msa0757110:five_prime_UTR 30.0%
GGAAAATTATGAAGGGATCA+TGG + chr5_2:11832478-11832497 None:intergenic 35.0%
!! TTTTGAGTGAAAAGTGCGTT+TGG + chr5_2:11832540-11832559 None:intergenic 35.0%
!! GTGTTTTGTTGGAATAGGAA+TGG + chr5_2:11832625-11832644 None:intergenic 35.0%
!! AAACGGTGTTTTGTTGGAAT+AGG + chr5_2:11832630-11832649 None:intergenic 35.0%
GCCGTTATCTGATTAAACAA+GGG + chr5_2:11832693-11832712 None:intergenic 35.0%
AGAAATTGAACGGTTAGGAT+TGG + chr5_2:11832799-11832818 None:intergenic 35.0%
!!! TGCTTTTTCTGCGATTTTTC+TGG + chr5_2:11832917-11832936 None:intergenic 35.0%
TGATGAAATTCAGCGAAGTA+CGG + chr5_2:11833002-11833021 None:intergenic 35.0%
TCGCTGAATTTCATCATCAA+TGG - chr5_2:11833006-11833025 Msa0757110:CDS 35.0%
ATCAATGGAGATTTCTTCTC+AGG - chr5_2:11833021-11833040 Msa0757110:CDS 35.0%
GATCAAATCGTTAGATCTAG+AGG - chr5_2:11833273-11833292 Msa0757110:intron 35.0%
ACAGTGAAGAAGAATTTCAG+AGG - chr5_2:11833510-11833529 Msa0757110:intron 35.0%
TTCAAACGAGTTTGAGTCAA+TGG - chr5_2:11833892-11833911 Msa0757110:exon 35.0%
!! TTTTTGGAGAAGAAATCGGA+CGG + chr5_2:11833931-11833950 None:intergenic 35.0%
TATTGTGAAGGATGTTCCAT+TGG - chr5_2:11834121-11834140 Msa0757110:five_prime_UTR 35.0%
GGAAAATTATGAAGGGATCA+TGG + chr5_2:11832478-11832497 None:intergenic 35.0%
!! TTTTGAGTGAAAAGTGCGTT+TGG + chr5_2:11832540-11832559 None:intergenic 35.0%
!! GTGTTTTGTTGGAATAGGAA+TGG + chr5_2:11832625-11832644 None:intergenic 35.0%
!! AAACGGTGTTTTGTTGGAAT+AGG + chr5_2:11832630-11832649 None:intergenic 35.0%
GCCGTTATCTGATTAAACAA+GGG + chr5_2:11832693-11832712 None:intergenic 35.0%
AGAAATTGAACGGTTAGGAT+TGG + chr5_2:11832799-11832818 None:intergenic 35.0%
!!! TGCTTTTTCTGCGATTTTTC+TGG + chr5_2:11832917-11832936 None:intergenic 35.0%
TGATGAAATTCAGCGAAGTA+CGG + chr5_2:11833002-11833021 None:intergenic 35.0%
TCGCTGAATTTCATCATCAA+TGG - chr5_2:11833006-11833025 Msa0757110:CDS 35.0%
ATCAATGGAGATTTCTTCTC+AGG - chr5_2:11833021-11833040 Msa0757110:CDS 35.0%
GATCAAATCGTTAGATCTAG+AGG - chr5_2:11833273-11833292 Msa0757110:intron 35.0%
ACAGTGAAGAAGAATTTCAG+AGG - chr5_2:11833510-11833529 Msa0757110:intron 35.0%
TTCAAACGAGTTTGAGTCAA+TGG - chr5_2:11833892-11833911 Msa0757110:exon 35.0%
!! TTTTTGGAGAAGAAATCGGA+CGG + chr5_2:11833931-11833950 None:intergenic 35.0%
TATTGTGAAGGATGTTCCAT+TGG - chr5_2:11834121-11834140 Msa0757110:five_prime_UTR 35.0%
GAAACGCGATTATTTGCAAG+TGG + chr5_2:11832499-11832518 None:intergenic 40.0%
TAACTAACGGGGGATGAAAA+CGG + chr5_2:11832655-11832674 None:intergenic 40.0%
TGACACGTCGTTGTAACTAA+CGG + chr5_2:11832668-11832687 None:intergenic 40.0%
CGCCGTTATCTGATTAAACA+AGG + chr5_2:11832694-11832713 None:intergenic 40.0%
TCTCAAAACGGGGAATTTGA+CGG + chr5_2:11832717-11832736 None:intergenic 40.0%
!!! GGATGATTGCTTTTTCGTAG+TGG + chr5_2:11832778-11832797 None:intergenic 40.0%
TTACTATTCACACCTCACTC+TGG + chr5_2:11832957-11832976 None:intergenic 40.0%
GATGAAATTCAGCGAAGTAC+GGG + chr5_2:11833001-11833020 None:intergenic 40.0%
! GAGATTTCTTCTCAGGTTGT+AGG - chr5_2:11833028-11833047 Msa0757110:CDS 40.0%
TGAAGTTGTAGCTTCATCCA+TGG + chr5_2:11833083-11833102 None:intergenic 40.0%
GATTCTTCCTCAACTGGAAA+AGG - chr5_2:11833162-11833181 Msa0757110:intron 40.0%
! TTTTCCTCCTTTTCCAGTTG+AGG + chr5_2:11833172-11833191 None:intergenic 40.0%
GAAAAGGAGGAAAAATCCTC+CGG - chr5_2:11833178-11833197 Msa0757110:intron 40.0%
TTCTTCATCGGAGATATCAC+CGG + chr5_2:11833200-11833219 None:intergenic 40.0%
!! CCTTTCTTCATCGAGTTGAA+CGG + chr5_2:11833254-11833273 None:intergenic 40.0%
TCTTCAAGCTCAAATTCCGT+TGG + chr5_2:11833959-11833978 None:intergenic 40.0%
!! TCGTTGGTTCGTTCTTTGAA+TGG - chr5_2:11834399-11834418 Msa0757110:five_prime_UTR 40.0%
!! CGTTGGTTCGTTCTTTGAAT+GGG - chr5_2:11834400-11834419 Msa0757110:five_prime_UTR 40.0%
GAAACGCGATTATTTGCAAG+TGG + chr5_2:11832499-11832518 None:intergenic 40.0%
TAACTAACGGGGGATGAAAA+CGG + chr5_2:11832655-11832674 None:intergenic 40.0%
TGACACGTCGTTGTAACTAA+CGG + chr5_2:11832668-11832687 None:intergenic 40.0%
CGCCGTTATCTGATTAAACA+AGG + chr5_2:11832694-11832713 None:intergenic 40.0%
TCTCAAAACGGGGAATTTGA+CGG + chr5_2:11832717-11832736 None:intergenic 40.0%
!!! GGATGATTGCTTTTTCGTAG+TGG + chr5_2:11832778-11832797 None:intergenic 40.0%
TTACTATTCACACCTCACTC+TGG + chr5_2:11832957-11832976 None:intergenic 40.0%
GATGAAATTCAGCGAAGTAC+GGG + chr5_2:11833001-11833020 None:intergenic 40.0%
! GAGATTTCTTCTCAGGTTGT+AGG - chr5_2:11833028-11833047 Msa0757110:CDS 40.0%
TGAAGTTGTAGCTTCATCCA+TGG + chr5_2:11833083-11833102 None:intergenic 40.0%
GATTCTTCCTCAACTGGAAA+AGG - chr5_2:11833162-11833181 Msa0757110:intron 40.0%
! TTTTCCTCCTTTTCCAGTTG+AGG + chr5_2:11833172-11833191 None:intergenic 40.0%
GAAAAGGAGGAAAAATCCTC+CGG - chr5_2:11833178-11833197 Msa0757110:intron 40.0%
TTCTTCATCGGAGATATCAC+CGG + chr5_2:11833200-11833219 None:intergenic 40.0%
!! CCTTTCTTCATCGAGTTGAA+CGG + chr5_2:11833254-11833273 None:intergenic 40.0%
TCTTCAAGCTCAAATTCCGT+TGG + chr5_2:11833959-11833978 None:intergenic 40.0%
!! TCGTTGGTTCGTTCTTTGAA+TGG - chr5_2:11834399-11834418 Msa0757110:five_prime_UTR 40.0%
!! CGTTGGTTCGTTCTTTGAAT+GGG - chr5_2:11834400-11834419 Msa0757110:five_prime_UTR 40.0%
ATAGGAATGGGAAGAGGATG+AGG + chr5_2:11832612-11832631 None:intergenic 45.0%
GTTGGAATAGGAATGGGAAG+AGG + chr5_2:11832618-11832637 None:intergenic 45.0%
! ACGGAGAAACGGTGTTTTGT+TGG + chr5_2:11832636-11832655 None:intergenic 45.0%
ACACGTCGTTGTAACTAACG+GGG + chr5_2:11832666-11832685 None:intergenic 45.0%
GACACGTCGTTGTAACTAAC+GGG + chr5_2:11832667-11832686 None:intergenic 45.0%
GATTCCCCCGTCACTATTAA+CGG - chr5_2:11832735-11832754 Msa0757110:exon 45.0%
AGTCTCCGTTAATAGTGACG+GGG + chr5_2:11832743-11832762 None:intergenic 45.0%
CAGTCTCCGTTAATAGTGAC+GGG + chr5_2:11832744-11832763 None:intergenic 45.0%
CCAGTCTCCGTTAATAGTGA+CGG + chr5_2:11832745-11832764 None:intergenic 45.0%
!! CTTTTTCGTAGTGGTGTGTG+TGG + chr5_2:11832769-11832788 None:intergenic 45.0%
!! TCGTCGGCGTTGAGAATTTT+CGG + chr5_2:11833144-11833163 None:intergenic 45.0%
TCCAGTTGAGGAAGAATCGT+CGG + chr5_2:11833160-11833179 None:intergenic 45.0%
TCTTCCTCAACTGGAAAAGG+AGG - chr5_2:11833165-11833184 Msa0757110:intron 45.0%
ATTGCTTGAACAACAGGACG+CGG + chr5_2:11833227-11833246 None:intergenic 45.0%
GGATCCATTGCTTGAACAAC+AGG + chr5_2:11833233-11833252 None:intergenic 45.0%
CCGTTCAACTCGATGAAGAA+AGG - chr5_2:11833251-11833270 Msa0757110:intron 45.0%
GTGAAGGATGTTCCATTGGA+AGG - chr5_2:11834125-11834144 Msa0757110:five_prime_UTR 45.0%
!! GGGATGTGGTGGGTTATTTA+TGG - chr5_2:11834354-11834373 Msa0757110:five_prime_UTR 45.0%
ATAGGAATGGGAAGAGGATG+AGG + chr5_2:11832612-11832631 None:intergenic 45.0%
GTTGGAATAGGAATGGGAAG+AGG + chr5_2:11832618-11832637 None:intergenic 45.0%
! ACGGAGAAACGGTGTTTTGT+TGG + chr5_2:11832636-11832655 None:intergenic 45.0%
ACACGTCGTTGTAACTAACG+GGG + chr5_2:11832666-11832685 None:intergenic 45.0%
GACACGTCGTTGTAACTAAC+GGG + chr5_2:11832667-11832686 None:intergenic 45.0%
GATTCCCCCGTCACTATTAA+CGG - chr5_2:11832735-11832754 Msa0757110:exon 45.0%
AGTCTCCGTTAATAGTGACG+GGG + chr5_2:11832743-11832762 None:intergenic 45.0%
CAGTCTCCGTTAATAGTGAC+GGG + chr5_2:11832744-11832763 None:intergenic 45.0%
CCAGTCTCCGTTAATAGTGA+CGG + chr5_2:11832745-11832764 None:intergenic 45.0%
!! CTTTTTCGTAGTGGTGTGTG+TGG + chr5_2:11832769-11832788 None:intergenic 45.0%
!! TCGTCGGCGTTGAGAATTTT+CGG + chr5_2:11833144-11833163 None:intergenic 45.0%
TCCAGTTGAGGAAGAATCGT+CGG + chr5_2:11833160-11833179 None:intergenic 45.0%
TCTTCCTCAACTGGAAAAGG+AGG - chr5_2:11833165-11833184 Msa0757110:intron 45.0%
ATTGCTTGAACAACAGGACG+CGG + chr5_2:11833227-11833246 None:intergenic 45.0%
GGATCCATTGCTTGAACAAC+AGG + chr5_2:11833233-11833252 None:intergenic 45.0%
CCGTTCAACTCGATGAAGAA+AGG - chr5_2:11833251-11833270 Msa0757110:intron 45.0%
GTGAAGGATGTTCCATTGGA+AGG - chr5_2:11834125-11834144 Msa0757110:five_prime_UTR 45.0%
!! GGGATGTGGTGGGTTATTTA+TGG - chr5_2:11834354-11834373 Msa0757110:five_prime_UTR 45.0%
GGGGGATGAAAACGGAGAAA+CGG + chr5_2:11832647-11832666 None:intergenic 50.0%
CACGTCGTTGTAACTAACGG+GGG + chr5_2:11832665-11832684 None:intergenic 50.0%
TGACGGGGGAATCTCAAAAC+GGG + chr5_2:11832728-11832747 None:intergenic 50.0%
! GTGACGGGGGAATCTCAAAA+CGG + chr5_2:11832729-11832748 None:intergenic 50.0%
GTCTCCGTTAATAGTGACGG+GGG + chr5_2:11832742-11832761 None:intergenic 50.0%
CCGTCACTATTAACGGAGAC+TGG - chr5_2:11832742-11832761 Msa0757110:exon 50.0%
!! TTGATAACGCGCGTGGAGTA+CGG + chr5_2:11832846-11832865 None:intergenic 50.0%
ACACCTGAAAAGCCAGAGTG+AGG - chr5_2:11832942-11832961 Msa0757110:CDS 50.0%
!!! ACACCTCACTCTGGCTTTTC+AGG + chr5_2:11832948-11832967 None:intergenic 50.0%
! CTTCTCAGGTTGTAGGTGTC+AGG - chr5_2:11833035-11833054 Msa0757110:intron 50.0%
TTCATCGGAGATATCACCGG+AGG + chr5_2:11833197-11833216 None:intergenic 50.0%
GGACGCGGGAAATTCTTCAT+CGG + chr5_2:11833212-11833231 None:intergenic 50.0%
TTGCTTGAACAACAGGACGC+GGG + chr5_2:11833226-11833245 None:intergenic 50.0%
GCGTCCTGTTGTTCAAGCAA+TGG - chr5_2:11833226-11833245 Msa0757110:intron 50.0%
ATTGGAAGGACGCTACGAGT+GGG - chr5_2:11834139-11834158 Msa0757110:five_prime_UTR 50.0%
GGGGGATGAAAACGGAGAAA+CGG + chr5_2:11832647-11832666 None:intergenic 50.0%
CACGTCGTTGTAACTAACGG+GGG + chr5_2:11832665-11832684 None:intergenic 50.0%
TGACGGGGGAATCTCAAAAC+GGG + chr5_2:11832728-11832747 None:intergenic 50.0%
! GTGACGGGGGAATCTCAAAA+CGG + chr5_2:11832729-11832748 None:intergenic 50.0%
GTCTCCGTTAATAGTGACGG+GGG + chr5_2:11832742-11832761 None:intergenic 50.0%
CCGTCACTATTAACGGAGAC+TGG - chr5_2:11832742-11832761 Msa0757110:exon 50.0%
!! TTGATAACGCGCGTGGAGTA+CGG + chr5_2:11832846-11832865 None:intergenic 50.0%
ACACCTGAAAAGCCAGAGTG+AGG - chr5_2:11832942-11832961 Msa0757110:CDS 50.0%
!!! ACACCTCACTCTGGCTTTTC+AGG + chr5_2:11832948-11832967 None:intergenic 50.0%
! CTTCTCAGGTTGTAGGTGTC+AGG - chr5_2:11833035-11833054 Msa0757110:intron 50.0%
TTCATCGGAGATATCACCGG+AGG + chr5_2:11833197-11833216 None:intergenic 50.0%
GGACGCGGGAAATTCTTCAT+CGG + chr5_2:11833212-11833231 None:intergenic 50.0%
TTGCTTGAACAACAGGACGC+GGG + chr5_2:11833226-11833245 None:intergenic 50.0%
GCGTCCTGTTGTTCAAGCAA+TGG - chr5_2:11833226-11833245 Msa0757110:intron 50.0%
ATTGGAAGGACGCTACGAGT+GGG - chr5_2:11834139-11834158 Msa0757110:five_prime_UTR 50.0%
CTGCAGACTGCGTTTGCGTT+TGG + chr5_2:11832570-11832589 None:intergenic 55.0%
GACGGGGGAATCTCAAAACG+GGG + chr5_2:11832727-11832746 None:intergenic 55.0%
!! GAGAGTGTTGATAACGCGCG+TGG + chr5_2:11832853-11832872 None:intergenic 55.0%
CGCTCAAGCTGCATTAGCCA+TGG - chr5_2:11833063-11833082 Msa0757110:intron 55.0%
GCCGACGATTCTTCCTCAAC+TGG - chr5_2:11833156-11833175 Msa0757110:intron 55.0%
CACTCGTAGCGTCCTTCCAA+TGG + chr5_2:11834140-11834159 None:intergenic 55.0%
CATTGGAAGGACGCTACGAG+TGG - chr5_2:11834138-11834157 Msa0757110:five_prime_UTR 55.0%
CTGCAGACTGCGTTTGCGTT+TGG + chr5_2:11832570-11832589 None:intergenic 55.0%
GACGGGGGAATCTCAAAACG+GGG + chr5_2:11832727-11832746 None:intergenic 55.0%
!! GAGAGTGTTGATAACGCGCG+TGG + chr5_2:11832853-11832872 None:intergenic 55.0%
CGCTCAAGCTGCATTAGCCA+TGG - chr5_2:11833063-11833082 Msa0757110:intron 55.0%
GCCGACGATTCTTCCTCAAC+TGG - chr5_2:11833156-11833175 Msa0757110:intron 55.0%
CACTCGTAGCGTCCTTCCAA+TGG + chr5_2:11834140-11834159 None:intergenic 55.0%
CATTGGAAGGACGCTACGAG+TGG - chr5_2:11834138-11834157 Msa0757110:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 11832436 11834489 11832436 ID=Msa0757110;Name=Msa0757110
chr5_2 mRNA 11832436 11834489 11832436 ID=Msa0757110-mRNA-1;Parent=Msa0757110;Name=Msa0757110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=589|1|1|1|1|1|4|311|182
chr5_2 exon 11832436 11832816 11832436 ID=Msa0757110-mRNA-1:exon:5301;Parent=Msa0757110-mRNA-1
chr5_2 exon 11832899 11833048 11832899 ID=Msa0757110-mRNA-1:exon:5300;Parent=Msa0757110-mRNA-1
chr5_2 exon 11833394 11833452 11833394 ID=Msa0757110-mRNA-1:exon:5299;Parent=Msa0757110-mRNA-1
chr5_2 exon 11833631 11834489 11833631 ID=Msa0757110-mRNA-1:exon:5298;Parent=Msa0757110-mRNA-1
chr5_2 five_prime_UTR 11833901 11834489 11833901 ID=Msa0757110-mRNA-1:five_prime_utr;Parent=Msa0757110-mRNA-1
chr5_2 CDS 11833631 11833900 11833631 ID=Msa0757110-mRNA-1:cds;Parent=Msa0757110-mRNA-1
chr5_2 CDS 11833394 11833452 11833394 ID=Msa0757110-mRNA-1:cds;Parent=Msa0757110-mRNA-1
chr5_2 CDS 11832899 11833048 11832899 ID=Msa0757110-mRNA-1:cds;Parent=Msa0757110-mRNA-1
chr5_2 CDS 11832747 11832816 11832747 ID=Msa0757110-mRNA-1:cds;Parent=Msa0757110-mRNA-1
chr5_2 three_prime_UTR 11832436 11832746 11832436 ID=Msa0757110-mRNA-1:three_prime_utr;Parent=Msa0757110-mRNA-1
Gene Sequence

>Msa0757110

ATGGAGATTTCTTCTCAGGTTGTAGGTGTCAGGACTCGCGCTCAAGCTGCATTAGCCATGGATGAAGCTACAACTTCATCTCCAAAAACTTCAAAGAGAAGAAAAATCAACAACAACCGAAAATTCTCAACGCCGACGATTCTTCCTCAACTGGAAAAGGAGGAAAAATCCTCCGGTGATATCTCCGATGAAGAATTTCCCGCGTCCTGTTGTTCAAGCAATGGATCCGTTCAACTCGATGAAGAAAGGATCAAATCGTTAGATCTAGAGGTGGAGAGCGCGCAAGTTGAAACGTCGACGTGCAATTACAGTGAAGAAGAATTTCAGAGGAGAGAGATGAGTCGTTCAAACGAGTTTGAGTCAATGGAAACAAATTCTAACCGTCCGATTTCTTCTCCAAAAAATATGCCAACGGAATTTGAGCTTGAAGAATTTTTCTCTGCTGCTGAGAAAAACATTCAGAAAAAGTTTCAAGAAAAGTATAATTATGATATTGTGAAGGATGTTCCATTGGAAGGACGCTACGAGTGGGTTCAGTTGAAGCCATGA

Protein sequence

>Msa0757110

MEISSQVVGVRTRAQAALAMDEATTSSPKTSKRRKINNNRKFSTPTILPQLEKEEKSSGDISDEEFPASCCSSNGSVQLDEERIKSLDLEVESAQVETSTCNYSEEEFQRREMSRSNEFESMETNSNRPISSPKNMPTEFELEEFFSAAEKNIQKKFQEKYNYDIVKDVPLEGRYEWVQLKP*