AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369780 MtrunA17_Chr4g0058091 99.027 514 5 0 1 514 1 514 0.0 1046
Msa1369780 MtrunA17_Chr3g0116561 74.409 508 130 0 7 514 2 509 0.0 785
Msa1369780 MtrunA17_Chr4g0001841 86.296 270 13 1 30 299 20 265 2.74e-161 458
Msa1369780 MtrunA17_Chr4g0001851 84.106 151 8 1 345 495 1 135 6.66e-84 256
Msa1369780 MtrunA17_Chr8g0383711 27.397 292 200 6 226 513 14 297 1.60e-31 123
Msa1369780 MtrunA17_Chr4g0067151 29.804 255 167 6 228 475 76 325 1.11e-29 119
Msa1369780 MtrunA17_Chr4g0067151 26.792 265 175 7 263 513 18 277 3.43e-19 88.6
Msa1369780 MtrunA17_Chr7g0253861 27.206 272 193 2 226 492 51 322 9.52e-28 114
Msa1369780 MtrunA17_Chr7g0253861 27.143 210 138 6 310 513 51 251 4.80e-15 76.6
Msa1369780 MtrunA17_Chr1g0185891 25.962 312 206 8 218 513 281 583 3.01e-24 106
Msa1369780 MtrunA17_Chr1g0185891 33.019 106 65 3 289 392 272 373 4.89e-12 68.6
Msa1369780 MtrunA17_Chr4g0057141 25.962 312 206 8 218 513 342 644 3.22e-24 106
Msa1369780 MtrunA17_Chr4g0057141 33.019 106 65 3 289 392 333 434 6.38e-12 68.2
Msa1369780 MtrunA17_Chr8g0392701 26.948 308 176 9 241 513 27 320 1.95e-22 98.2
Msa1369780 MtrunA17_Chr8g0392701 25.818 275 172 8 225 475 58 324 5.94e-17 82.0
Msa1369780 MtrunA17_Chr8g0392701 27.027 222 140 7 306 513 7 220 1.42e-13 72.0
Msa1369780 MtrunA17_Chr1g0185501 26.073 303 214 6 219 513 12 312 2.90e-22 97.4
Msa1369780 MtrunA17_Chr2g0281451 26.906 223 157 3 245 466 31 248 1.48e-20 95.9
Msa1369780 MtrunA17_Chr2g0281451 26.974 152 109 2 228 378 98 248 2.60e-15 79.3
Msa1369780 MtrunA17_Chr2g0281451 23.684 228 164 4 285 509 29 249 1.35e-14 77.0
Msa1369780 MtrunA17_Chr6g0448921 27.049 244 168 5 224 462 7 245 1.63e-20 95.5
Msa1369780 MtrunA17_Chr6g0448921 24.887 221 156 4 284 501 29 242 3.36e-16 82.0
Msa1369780 MtrunA17_Chr6g0448921 24.103 195 146 2 221 414 50 243 1.06e-12 70.9
Msa1369780 MtrunA17_Chr6g0448921 21.154 208 153 4 310 513 12 212 2.12e-11 66.6
Msa1369780 MtrunA17_Chr4g0059031 26.394 269 175 8 263 514 350 612 1.14e-17 86.7
Msa1369780 MtrunA17_Chr4g0059031 31.351 185 116 5 253 427 41 224 2.26e-16 82.4
Msa1369780 MtrunA17_Chr8g0390861 25.322 233 163 4 283 513 880 1103 7.18e-17 84.3
Msa1369780 MtrunA17_Chr8g0390861 26.119 268 163 13 226 471 949 1203 4.81e-13 72.0
Msa1369780 MtrunA17_Chr1g0200901 24.912 285 199 7 225 504 118 392 7.44e-17 82.8
Msa1369780 MtrunA17_Chr1g0200901 24.306 288 155 8 224 498 74 311 4.44e-11 64.7
Msa1369780 MtrunA17_Chr2g0295791 22.222 261 185 7 224 477 163 412 2.88e-16 81.3
Msa1369780 MtrunA17_Chr8g0352821 22.635 296 181 5 221 514 216 465 1.37e-15 79.7
Msa1369780 MtrunA17_Chr3g0136971 27.815 302 188 11 218 513 337 614 4.14e-15 78.2
Msa1369780 MtrunA17_Chr3g0136971 21.951 205 158 2 226 429 415 618 9.26e-12 67.8
Msa1369780 MtrunA17_Chr1g0176241 27.660 141 101 1 202 342 342 481 1.01e-14 76.6
Msa1369780 MtrunA17_Chr1g0176241 25.630 238 146 7 245 471 264 481 1.16e-11 67.0
Msa1369780 MtrunA17_Chr4g0053651 23.000 300 172 6 223 512 323 573 1.83e-14 75.9
Msa1369780 MtrunA17_Chr1g0172501 22.807 285 210 5 232 514 277 553 1.92e-14 75.9
Msa1369780 MtrunA17_Chr3g0093681 22.807 285 210 5 232 514 277 553 2.21e-14 75.9
Msa1369780 MtrunA17_Chr3g0095501 24.522 314 209 11 215 513 255 555 8.42e-14 73.9
Msa1369780 MtrunA17_Chr5g0401661 23.381 278 195 6 245 512 411 680 5.43e-13 71.6
Msa1369780 MtrunA17_Chr5g0401671 24.172 302 166 7 223 512 340 590 7.84e-13 70.9
Msa1369780 MtrunA17_Chr2g0284241 23.693 287 193 8 245 514 23 300 1.47e-12 68.9
Msa1369780 MtrunA17_Chr1g0162961 23.113 212 141 3 240 429 86 297 1.96e-12 69.3
Msa1369780 MtrunA17_Chr4g0070791 24.812 266 169 8 245 489 33 288 6.03e-12 67.0
Msa1369780 MtrunA17_Chr3g0099061 22.422 223 144 7 280 482 222 435 6.51e-12 67.8
Msa1369780 MtrunA17_Chr3g0099061 27.108 166 107 4 328 483 227 388 9.02e-12 67.4
Msa1369780 MtrunA17_Chr7g0246741 25.243 206 146 4 281 483 378 578 8.65e-12 67.8
Msa1369780 MtrunA17_Chr6g0449701 23.741 278 172 11 274 513 110 385 9.33e-12 67.4
Msa1369780 MtrunA17_Chr2g0292301 23.377 231 162 5 245 473 225 442 1.10e-11 67.0
Msa1369780 MtrunA17_Chr2g0294611 24.188 277 161 9 225 471 239 496 1.29e-11 67.8
Msa1369780 MtrunA17_Chr4g0035611 26.394 269 166 12 225 485 46 290 1.88e-11 67.0
Msa1369780 MtrunA17_Chr1g0168391 25.000 204 147 4 232 431 226 427 4.07e-11 65.5
Msa1369780 MtrunA17_Chr1g0183051 24.127 315 207 14 217 513 203 503 5.83e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369780 AT5G50230.1 71.203 507 146 0 8 514 3 509 0.0 784
Msa1369780 AT5G64730.1 26.490 302 216 4 213 513 1 297 4.74e-30 119
Msa1369780 AT3G49660.1 28.682 258 168 5 226 475 67 316 1.39e-29 119
Msa1369780 AT3G49660.1 25.581 301 205 6 226 514 20 313 1.38e-27 113
Msa1369780 AT2G43770.1 26.838 272 194 2 226 492 49 320 2.02e-28 116
Msa1369780 AT2G43770.1 26.923 208 141 5 310 513 49 249 4.68e-15 77.0
Msa1369780 AT1G48630.1 26.403 303 185 8 241 513 27 321 2.66e-22 98.2
Msa1369780 AT1G48630.1 26.087 276 171 8 225 475 58 325 1.49e-17 84.3
Msa1369780 AT1G48630.1 25.455 220 146 7 306 513 7 220 1.44e-12 69.3
Msa1369780 AT3G18130.1 26.733 303 184 8 241 513 27 321 3.10e-22 98.2
Msa1369780 AT3G18130.1 26.087 276 171 8 225 475 58 325 1.68e-17 84.0
Msa1369780 AT3G18130.1 25.000 220 147 7 306 513 7 220 1.12e-11 66.6
Msa1369780 AT1G10580.1 24.038 312 212 8 218 513 270 572 3.48e-21 97.4
Msa1369780 AT3G16650.1 25.191 262 175 8 224 477 163 411 7.61e-21 95.9
Msa1369780 AT5G23430.3 28.111 217 150 4 224 435 7 222 1.17e-20 96.3
Msa1369780 AT5G23430.3 25.229 218 153 4 285 499 30 240 1.81e-15 80.1
Msa1369780 AT5G23430.3 24.103 195 146 2 221 414 50 243 9.81e-12 68.2
Msa1369780 AT5G23430.2 28.111 217 150 4 224 435 7 222 1.17e-20 96.3
Msa1369780 AT5G23430.2 25.229 218 153 4 285 499 30 240 1.81e-15 80.1
Msa1369780 AT5G23430.2 24.103 195 146 2 221 414 50 243 9.81e-12 68.2
Msa1369780 AT5G23430.1 28.111 217 150 4 224 435 7 222 1.22e-20 96.3
Msa1369780 AT5G23430.1 25.229 218 153 4 285 499 30 240 1.86e-15 80.1
Msa1369780 AT5G23430.1 24.103 195 146 2 221 414 50 243 1.02e-11 68.2
Msa1369780 AT1G11160.2 27.165 254 174 6 224 471 6 254 1.26e-20 96.3
Msa1369780 AT1G11160.2 23.348 227 168 3 284 509 28 249 7.02e-13 72.0
Msa1369780 AT1G11160.1 27.165 254 174 6 224 471 6 254 1.34e-20 96.3
Msa1369780 AT1G11160.1 23.348 227 168 3 284 509 28 249 7.40e-13 72.0
Msa1369780 AT1G18080.1 25.484 310 180 9 241 513 27 322 1.67e-20 93.2
Msa1369780 AT1G18080.1 28.440 218 143 6 306 513 7 221 5.10e-15 76.6
Msa1369780 AT1G18080.1 23.827 277 177 8 225 475 58 326 2.43e-14 74.7
Msa1369780 AT1G11160.4 27.165 254 174 6 224 471 6 254 1.78e-20 95.9
Msa1369780 AT1G11160.4 23.348 227 168 3 284 509 28 249 9.53e-13 71.6
Msa1369780 AT5G08390.1 28.571 217 149 4 224 435 7 222 2.85e-20 95.1
Msa1369780 AT5G08390.1 24.074 216 158 3 285 499 30 240 6.70e-15 78.2
Msa1369780 AT5G08390.1 22.564 195 149 2 221 414 50 243 4.69e-11 65.9
Msa1369780 AT5G08390.1 25.974 154 104 3 226 374 97 245 6.92e-11 65.5
Msa1369780 AT4G15900.1 23.970 267 173 9 224 477 169 418 3.14e-19 90.9
Msa1369780 AT4G02730.1 25.704 284 202 6 214 490 23 304 3.59e-19 89.4
Msa1369780 AT4G02730.1 21.654 254 186 7 267 513 38 285 1.77e-13 72.0
Msa1369780 AT1G04510.1 26.509 381 234 13 58 431 87 428 1.57e-18 89.0
Msa1369780 AT1G04510.2 26.509 381 234 13 58 431 87 428 1.57e-18 89.0
Msa1369780 AT1G61210.3 26.378 254 176 6 224 472 6 253 5.33e-18 88.2
Msa1369780 AT1G61210.3 24.324 222 156 5 284 501 28 241 1.42e-12 70.9
Msa1369780 AT5G13480.2 23.469 294 179 4 221 513 167 415 6.10e-18 87.4
Msa1369780 AT5G13480.3 23.469 294 179 4 221 513 144 392 6.34e-18 87.4
Msa1369780 AT5G13480.4 23.469 294 179 4 221 513 144 392 8.93e-18 87.0
Msa1369780 AT1G61210.2 26.872 227 160 4 224 445 6 231 9.21e-18 87.4
Msa1369780 AT1G61210.2 24.324 222 156 5 284 501 28 241 2.61e-12 70.1
Msa1369780 AT1G61210.2 25.157 159 116 3 226 383 96 252 1.04e-11 68.2
Msa1369780 AT5G13480.1 23.469 294 179 4 221 513 156 404 9.77e-18 87.0
Msa1369780 AT1G61210.1 26.872 227 160 4 224 445 6 231 9.97e-18 87.4
Msa1369780 AT1G61210.1 24.324 222 156 5 284 501 28 241 2.68e-12 70.1
Msa1369780 AT1G61210.1 25.157 159 116 3 226 383 96 252 1.17e-11 68.2
Msa1369780 AT5G52820.1 22.849 337 214 11 219 513 97 429 1.90e-17 85.5
Msa1369780 AT5G52820.1 26.816 179 111 3 164 342 313 471 1.88e-14 76.3
Msa1369780 AT2G33340.2 23.758 463 294 16 58 507 87 503 2.34e-16 82.4
Msa1369780 AT2G33340.1 23.758 463 294 16 58 507 87 503 2.34e-16 82.4
Msa1369780 AT2G33340.3 24.011 379 243 11 58 430 87 426 4.28e-16 81.3
Msa1369780 AT5G16750.1 26.038 265 177 6 264 513 350 610 4.55e-16 82.0
Msa1369780 AT5G16750.1 26.512 215 149 5 254 461 42 254 4.58e-15 79.0
Msa1369780 AT5G16750.1 23.443 273 175 8 221 471 392 652 2.36e-11 67.0
Msa1369780 AT3G27640.1 24.911 281 169 8 274 513 130 409 1.35e-15 80.1
Msa1369780 AT3G27640.2 24.911 281 169 8 274 513 111 390 1.43e-15 79.7
Msa1369780 AT5G43920.1 25.806 310 208 11 218 513 212 513 2.11e-15 79.3
Msa1369780 AT1G11160.3 26.087 207 146 4 267 471 11 212 3.04e-15 79.3
Msa1369780 AT1G11160.3 28.387 155 107 3 226 378 54 206 3.91e-14 75.9
Msa1369780 AT1G11160.3 25.123 203 146 3 308 509 10 207 1.86e-12 70.5
Msa1369780 AT1G49040.1 26.937 271 171 12 241 498 866 1122 3.16e-15 79.3
Msa1369780 AT1G49040.1 24.481 241 155 7 283 513 866 1089 6.11e-14 75.5
Msa1369780 AT1G49040.1 24.862 181 125 6 233 409 944 1117 1.38e-12 71.2
Msa1369780 AT3G18140.1 24.373 279 197 7 245 514 8 281 1.01e-14 75.5
Msa1369780 AT3G18140.1 25.000 184 122 5 235 406 124 303 7.88e-11 63.5
Msa1369780 AT5G67320.1 23.264 288 162 5 226 503 361 599 1.20e-14 77.0
Msa1369780 AT4G03020.1 26.104 249 164 6 275 513 232 470 1.47e-14 76.6
Msa1369780 AT4G03020.2 26.104 249 164 6 275 513 232 470 1.47e-14 76.6
Msa1369780 AT4G03020.3 26.104 249 164 6 275 513 232 470 1.47e-14 76.6
Msa1369780 AT3G49180.1 24.645 211 142 3 243 436 91 301 7.25e-14 73.9
Msa1369780 AT5G08560.1 23.944 284 164 10 278 513 280 559 1.01e-13 74.3
Msa1369780 AT5G08560.2 23.944 284 164 10 278 513 280 559 1.01e-13 74.3
Msa1369780 AT5G08560.3 23.944 284 164 10 278 513 280 559 1.01e-13 74.3
Msa1369780 AT5G25150.1 26.367 311 177 11 218 513 340 613 1.60e-13 73.6
Msa1369780 AT5G25150.1 22.439 205 157 2 226 429 414 617 6.13e-11 65.5
Msa1369780 AT5G25150.2 26.367 311 177 11 218 513 340 613 1.62e-13 73.6
Msa1369780 AT5G25150.2 22.439 205 157 2 226 429 414 617 6.60e-11 65.5
Msa1369780 AT2G47410.4 28.249 177 109 3 225 383 49 225 1.94e-13 73.9
Msa1369780 AT2G47410.1 28.249 177 109 3 225 383 231 407 1.97e-13 73.9
Msa1369780 AT2G47410.2 28.249 177 109 3 225 383 230 406 2.11e-13 73.9
Msa1369780 AT2G21390.1 24.000 275 172 7 225 468 46 314 7.91e-13 72.0
Msa1369780 AT2G47410.6 26.768 198 127 3 225 420 49 230 1.09e-12 71.6
Msa1369780 AT2G47410.3 26.768 198 127 3 225 420 49 230 1.09e-12 71.6
Msa1369780 AT2G16405.1 23.308 266 182 7 268 513 212 475 1.18e-12 70.5
Msa1369780 AT2G41500.1 23.140 242 174 6 277 514 303 536 1.25e-12 70.5
Msa1369780 AT2G41500.1 23.320 253 182 6 226 474 294 538 1.73e-12 70.1
Msa1369780 AT2G41500.2 23.140 242 174 6 277 514 303 536 1.25e-12 70.5
Msa1369780 AT2G41500.2 23.320 253 182 6 226 474 294 538 1.73e-12 70.1
Msa1369780 AT2G47410.5 26.768 198 127 3 225 420 231 412 1.27e-12 71.2
Msa1369780 AT4G29830.1 23.810 294 195 7 227 498 11 297 1.33e-12 69.3
Msa1369780 AT2G22040.1 23.693 287 191 9 245 514 13 288 1.75e-12 68.9
Msa1369780 AT2G22040.1 25.134 187 125 4 235 409 130 313 1.91e-12 68.6
Msa1369780 AT1G71840.1 23.841 302 208 10 224 513 64 355 2.70e-12 68.9
Msa1369780 AT3G15610.1 23.810 273 195 7 245 513 34 297 3.83e-12 68.2
Msa1369780 AT1G73720.1 24.848 165 111 3 328 483 226 386 7.78e-12 68.2
Msa1369780 AT1G73720.1 22.791 215 152 6 280 482 221 433 1.60e-11 67.0
Msa1369780 AT5G49430.2 26.570 207 128 4 225 429 240 424 3.69e-11 66.6
Msa1369780 AT5G49430.1 26.570 207 128 4 225 429 240 424 3.69e-11 66.6
Msa1369780 AT1G62020.1 22.909 275 175 7 225 468 46 314 4.58e-11 66.2
Msa1369780 AT2G26490.1 26.820 261 157 13 244 491 146 385 7.04e-11 64.7
Msa1369780 AT1G52730.1 22.993 274 196 8 245 513 34 297 8.61e-11 63.9
Msa1369780 AT1G52730.2 22.993 274 196 8 245 513 34 297 8.61e-11 63.9
Msa1369780 AT5G14530.1 22.727 308 206 10 200 495 8 295 8.75e-11 63.9

Find 131 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAATTGATCACTAAATT+AGG 0.120625 tig0018912:-37451 None:intergenic
TTAACAGAGTGGCTTCTAAT+TGG 0.280252 tig0018912:+40442 Msa1369780:CDS
TCCTTAAGTTCAAGTCTTAC+TGG 0.289367 tig0018912:+39910 Msa1369780:CDS
ACCATTGTTGTTGTTGTGTT+TGG 0.308418 tig0018912:-37476 None:intergenic
GATTGTATTATACCTCATTT+AGG 0.316444 tig0018912:-38800 None:intergenic
ACGACCGTACTATAAAAGTT+TGG 0.316749 tig0018912:+40127 Msa1369780:CDS
CAGAATTGATCACTAAATTA+GGG 0.329052 tig0018912:-37450 None:intergenic
CGAGTCCGTCATACCCTTAC+TGG 0.338442 tig0018912:+40036 Msa1369780:CDS
CTCTCAATTAAAGACAGATT+TGG 0.339284 tig0018912:+38623 Msa1369780:CDS
TCAATCGCAACTTGTTCTTT+CGG 0.343457 tig0018912:-37512 None:intergenic
TTGTTTCAATCTGGTCATAA+TGG 0.359886 tig0018912:+40649 Msa1369780:CDS
CTTCTGTTCTCTGTTGTAGC+TGG 0.366870 tig0018912:+40583 Msa1369780:CDS
GCAAAGAGCATTGCAGTTGC+TGG 0.371762 tig0018912:-40190 None:intergenic
TCAATATCCCTTTCTCGAAA+TGG 0.373411 tig0018912:+40330 Msa1369780:CDS
ACAACAACAATGGTGAAAAC+TGG 0.379287 tig0018912:+37485 Msa1369780:exon
TCGATGGTAATCTTCGGTTA+TGG 0.380769 tig0018912:+40250 Msa1369780:CDS
TTCAGAACTAAAAGCACAAC+TGG 0.383721 tig0018912:+38686 Msa1369780:CDS
ATCGACATGTCCAGAAAATA+TGG 0.387589 tig0018912:-40232 None:intergenic
CGACCGTACTATAAAAGTTT+GGG 0.390463 tig0018912:+40128 Msa1369780:CDS
TGGCTGCCTTGGCTCAGTAT+TGG 0.392787 tig0018912:+39930 Msa1369780:CDS
GGTATGGGATTGTTTCTATC+TGG 0.393142 tig0018912:+40716 Msa1369780:three_prime_UTR
AATTCTAGTAGATTGATTAC+TGG 0.396540 tig0018912:+39844 Msa1369780:CDS
GAAAGAGAAAGCAGAGAACT+TGG 0.396574 tig0018912:+38143 Msa1369780:CDS
TCAAGTCTTACTGGCTGCCT+TGG 0.397402 tig0018912:+39919 Msa1369780:CDS
TTCTAGACCCATCGTTTCTC+AGG 0.404660 tig0018912:+37616 Msa1369780:CDS
AGAATTGTACTCGAACAATA+AGG 0.407571 tig0018912:-39827 None:intergenic
CAATATTTCCATTTCGAGAA+AGG 0.408563 tig0018912:-40338 None:intergenic
CTGATGGATCTGTGCATATA+TGG 0.411583 tig0018912:+40514 Msa1369780:CDS
GGAATGGAATTGTTTCAATC+TGG 0.416661 tig0018912:+40640 Msa1369780:CDS
CGATGGTAATCTTCGGTTAT+GGG 0.416788 tig0018912:+40251 Msa1369780:CDS
TTAAGAAAATCTAACAGGTA+TGG 0.435974 tig0018912:+40700 Msa1369780:three_prime_UTR
AAGACATGGTTCAGCGGCTA+AGG 0.439770 tig0018912:+39662 Msa1369780:CDS
ATTCCTGTCAGCTGAAGCTA+GGG 0.443091 tig0018912:-40622 None:intergenic
AATATTTCCATTTCGAGAAA+GGG 0.445723 tig0018912:-40337 None:intergenic
CAGTCTTACTTAATATCTAA+AGG 0.445934 tig0018912:+40894 Msa1369780:three_prime_UTR
CTTTATCCGTGTGTCCAGTA+AGG 0.447371 tig0018912:-40050 None:intergenic
TAAGAAAATCTAACAGGTAT+GGG 0.449668 tig0018912:+40701 Msa1369780:three_prime_UTR
TTTGTTTGATGTGCGATCTC+TGG 0.451133 tig0018912:+40392 Msa1369780:CDS
GCCAGTAAGACTTGAACTTA+AGG 0.454568 tig0018912:-39911 None:intergenic
TTAGTTTGGCCGCTGTTCCT+AGG 0.455437 tig0018912:-41016 None:intergenic
TCCCTTCCAATTGCAAATAC+AGG 0.460830 tig0018912:+39776 Msa1369780:CDS
TATCTAACCATGCCATTGGC+AGG 0.464224 tig0018912:+40983 Msa1369780:three_prime_UTR
AGTCTTACTTAATATCTAAA+GGG 0.465889 tig0018912:+40895 Msa1369780:three_prime_UTR
CATTCCTGTCAGCTGAAGCT+AGG 0.467857 tig0018912:-40623 None:intergenic
AATAACAGATCGATTATCAT+TGG 0.473031 tig0018912:-39965 None:intergenic
GCTCTTTGCTTCAGCACAGA+TGG 0.474209 tig0018912:+40204 Msa1369780:CDS
CTAGAAAGTGCGAGAAAAGC+AGG 0.474966 tig0018912:-37599 None:intergenic
CTTTAGATATTAAGTAAGAC+TGG 0.475563 tig0018912:-40893 None:intergenic
GACAACAATCATGTTGCCGC+TGG 0.477287 tig0018912:+40486 Msa1369780:CDS
ATTTAGCCTGTATTTGCAAT+TGG 0.481713 tig0018912:-39782 None:intergenic
AAGTTGTTCCTTGTTTAGAC+AGG 0.483019 tig0018912:+40807 Msa1369780:three_prime_UTR
AGACTAGAGAGACCGAAAAT+AGG 0.486000 tig0018912:-37394 None:intergenic
GAAAGCAGAGAACTTGGAAG+TGG 0.488324 tig0018912:+38149 Msa1369780:CDS
AACCCCTAGCTTCAGCTGAC+AGG 0.489230 tig0018912:+40619 Msa1369780:CDS
ATTCTAGTAGATTGATTACT+GGG 0.491572 tig0018912:+39845 Msa1369780:CDS
GCGGCAACATGATTGTTGTC+TGG 0.492362 tig0018912:-40483 None:intergenic
TGTTGTAGCTGGAGTGGAAT+GGG 0.499332 tig0018912:+40594 Msa1369780:CDS
AGCCTGTATTTGCAATTGGA+AGG 0.502314 tig0018912:-39778 None:intergenic
AAACGCCATCTTCTCGAAGA+AGG 0.507490 tig0018912:+37566 Msa1369780:CDS
GCCTGTATTTGCAATTGGAA+GGG 0.520159 tig0018912:-39777 None:intergenic
CATATATGGTCAATATCTAA+AGG 0.520412 tig0018912:+40528 Msa1369780:CDS
GAGCGCCTTCTTCGAGAAGA+TGG 0.521377 tig0018912:-37571 None:intergenic
GACATGTCGATGGTAATCTT+CGG 0.525301 tig0018912:+40244 Msa1369780:CDS
AAAGTTTGGGACTTGATGAA+AGG 0.527945 tig0018912:+40141 Msa1369780:CDS
TACTTCCACAACAAGTTGCT+CGG 0.529307 tig0018912:-38208 None:intergenic
CAAAGAGCATTGCAGTTGCT+GGG 0.531625 tig0018912:-40189 None:intergenic
AATTTATCTAACCATGCCAT+TGG 0.532907 tig0018912:+40979 Msa1369780:three_prime_UTR
GTTGCCGCTGGGTCTACTGA+TGG 0.534764 tig0018912:+40498 Msa1369780:CDS
GTTCTCTGTTGTAGCTGGAG+TGG 0.537003 tig0018912:+40588 Msa1369780:CDS
AAAGTGTGGGATACAAATAC+AGG 0.539323 tig0018912:+39886 Msa1369780:CDS
ATTGTTCGTCGAAGTGAAGA+AGG 0.542555 tig0018912:+39727 Msa1369780:CDS
TATGTGTGGGATCTTAGCTC+AGG 0.543218 tig0018912:+40012 Msa1369780:CDS
CTAGCTTCAGCTGACAGGAA+TGG 0.547140 tig0018912:+40624 Msa1369780:CDS
AGAAGGAGTTGACAGAATTG+AGG 0.554456 tig0018912:+38292 Msa1369780:CDS
TTTCTATCTGGTCATAGTGA+CGG 0.558867 tig0018912:+40728 Msa1369780:three_prime_UTR
GTGCGATCTCTGGAAGTTTG+TGG 0.559305 tig0018912:+40402 Msa1369780:CDS
TGCAATTTCTGATATGCAGA+AGG 0.560064 tig0018912:+38275 Msa1369780:CDS
CTTGATGTTAGAAAAGATGA+AGG 0.562481 tig0018912:+38767 Msa1369780:CDS
TGAAATAATCAGTACTCTGA+AGG 0.562507 tig0018912:+40551 Msa1369780:CDS
GTTATCCGAGCAACTTGTTG+TGG 0.566280 tig0018912:+38203 Msa1369780:CDS
CTCAAACAACTTGTATGTGT+GGG 0.569983 tig0018912:+39999 Msa1369780:CDS
GCTCAAACAACTTGTATGTG+TGG 0.578898 tig0018912:+39998 Msa1369780:CDS
CTGTTGTAGCTGGAGTGGAA+TGG 0.580319 tig0018912:+40593 Msa1369780:CDS
ATATTGCATTGACCAGTGGT+AGG 0.580920 tig0018912:+40355 Msa1369780:CDS
ATTACCACCTGCCAATGGCA+TGG 0.581760 tig0018912:-40990 None:intergenic
GTGCAAATTATCCCTACCAC+TGG 0.586288 tig0018912:-40367 None:intergenic
AGACATGGTTCAGCGGCTAA+GGG 0.586487 tig0018912:+39663 Msa1369780:CDS
ACAACTTGCAAGGGAACAAG+TGG 0.587447 tig0018912:+39699 Msa1369780:CDS
GTTCAGCGGCTAAGGGCTAG+TGG 0.589500 tig0018912:+39670 Msa1369780:CDS
GGATGCTGAACGCCTAAATG+AGG 0.592570 tig0018912:+38788 Msa1369780:CDS
AATGCTATAAAGCTCAATCT+CGG 0.592904 tig0018912:+38181 Msa1369780:CDS
TACAGGCTAAATGCACATGA+AGG 0.593778 tig0018912:+39793 Msa1369780:CDS
ACAACAATCATGTTGCCGCT+GGG 0.594947 tig0018912:+40487 Msa1369780:CDS
GTGGTCTAGAACAACTTGCA+AGG 0.596866 tig0018912:+39689 Msa1369780:CDS
TATTGCATTGACCAGTGGTA+GGG 0.597211 tig0018912:+40356 Msa1369780:CDS
TTTATCCGTGTGTCCAGTAA+GGG 0.597962 tig0018912:-40049 None:intergenic
TATGGGACATTCAGAGTGGA+AGG 0.603476 tig0018912:+40268 Msa1369780:CDS
TTGTGCGGTTGATGTTAGCA+AGG 0.604078 tig0018912:+40074 Msa1369780:CDS
ATGATCTACTTATTTGTACG+TGG 0.604095 tig0018912:+37369 Msa1369780:five_prime_UTR
GGTTAATTACCACCTGCCAA+TGG 0.605064 tig0018912:-40995 None:intergenic
AGGATCGTTCAGTTAAAGTG+TGG 0.609417 tig0018912:+39872 Msa1369780:CDS
GGATCGTTCAGTTAAAGTGT+GGG 0.613938 tig0018912:+39873 Msa1369780:CDS
CTTGCAAGGGAACAAGTGGA+TGG 0.615284 tig0018912:+39703 Msa1369780:CDS
TGGTCTAGAACAACTTGCAA+GGG 0.618737 tig0018912:+39690 Msa1369780:CDS
TGATCTACTTATTTGTACGT+GGG 0.620905 tig0018912:+37370 Msa1369780:five_prime_UTR
TTCCTGTCAGCTGAAGCTAG+GGG 0.627368 tig0018912:-40621 None:intergenic
ACCAAACACAACAACAACAA+TGG 0.632413 tig0018912:+37475 Msa1369780:exon
TCTAGTAGATTGATTACTGG+GGG 0.632682 tig0018912:+39847 Msa1369780:CDS
GGAAATATTGCATTGACCAG+TGG 0.635731 tig0018912:+40351 Msa1369780:CDS
GGTACGTACCTGAGAAACGA+TGG 0.636424 tig0018912:-37624 None:intergenic
TGTGTCCAGTAAGGGTATGA+CGG 0.638602 tig0018912:-40041 None:intergenic
TCATACCCTTACTGGACACA+CGG 0.639635 tig0018912:+40044 Msa1369780:CDS
TGGCAGGTGGTAATTAACCT+AGG 0.643923 tig0018912:+40999 Msa1369780:three_prime_UTR
GAGTGGAAGGCTGCTAAGTG+AGG 0.644822 tig0018912:+40281 Msa1369780:CDS
TGAGATCCAATACTGAGCCA+AGG 0.644864 tig0018912:-39936 None:intergenic
AGAAAGGGATATTGACGTGA+CGG 0.645528 tig0018912:-40322 None:intergenic
AATGGTGTCCTGTCTAAACA+AGG 0.646342 tig0018912:-40815 None:intergenic
ATCTGGTCATAGTGACGGTG+TGG 0.646777 tig0018912:+40733 Msa1369780:three_prime_UTR
AGGCTAAATGCACATGAAGG+AGG 0.648402 tig0018912:+39796 Msa1369780:CDS
TATATGAAGACATGGTTCAG+CGG 0.657419 tig0018912:+39656 Msa1369780:CDS
GTACGTACCTGAGAAACGAT+GGG 0.661026 tig0018912:-37623 None:intergenic
AAATGCGCTATATGAAGACA+TGG 0.661275 tig0018912:+39648 Msa1369780:CDS
TTCTAGTAGATTGATTACTG+GGG 0.672008 tig0018912:+39846 Msa1369780:CDS
CGGTTATGGGACATTCAGAG+TGG 0.682375 tig0018912:+40264 Msa1369780:CDS
GGTAATTAACCTAGGAACAG+CGG 0.683386 tig0018912:+41007 Msa1369780:three_prime_UTR
CTAACCATGCCATTGGCAGG+TGG 0.683421 tig0018912:+40986 Msa1369780:three_prime_UTR
ACACACGGATAAAGTTTGTG+CGG 0.689247 tig0018912:+40059 Msa1369780:CDS
AGAAGCCACTCTGTTAACTG+TGG 0.703135 tig0018912:-40436 None:intergenic
ATCTGGTCATAATGGCTGTG+TGG 0.714659 tig0018912:+40657 Msa1369780:exon
ACGAGCCACAGTTAACAGAG+TGG 0.730751 tig0018912:+40431 Msa1369780:CDS
AGATCCATCAGTAGACCCAG+CGG 0.753123 tig0018912:-40502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACAATTTTCATTTTTTTT+AGG + tig0018912:37654-37673 Msa1369780:intron 10.0%
!!! AACAATTTTCATTTTTTTTA+GGG + tig0018912:37655-37674 Msa1369780:intron 10.0%
!! AATGAAAATTGTTAATGAAA+GGG - tig0018912:37648-37667 None:intergenic 15.0%
!! AAATGAAAATTGTTAATGAA+AGG - tig0018912:37649-37668 None:intergenic 15.0%
!! AGGAAACAATAAAAAAAAAA+TGG - tig0018912:37715-37734 None:intergenic 15.0%
!! AAAAACTCTTATAAGTTTAT+AGG - tig0018912:39109-39128 None:intergenic 15.0%
!! AAATGTATTATTAGTTGAAT+CGG - tig0018912:39613-39632 None:intergenic 15.0%
!!! CTATTTTACAGTTTTTAAAT+TGG + tig0018912:40766-40785 Msa1369780:three_prime_UTR 15.0%
!!! TTTTATTGTTTCCTTTATTG+TGG + tig0018912:37721-37740 Msa1369780:intron 20.0%
!! ATGATTGAACTAATTTCTTA+CGG - tig0018912:37749-37768 None:intergenic 20.0%
!! ATAAAAAAGTTCGATTAAAC+GGG - tig0018912:38943-38962 None:intergenic 20.0%
!! GATAAAAAAGTTCGATTAAA+CGG - tig0018912:38944-38963 None:intergenic 20.0%
!! CATCATTCAAAAAAATTCAA+TGG - tig0018912:40836-40855 None:intergenic 20.0%
!! AGTCTTACTTAATATCTAAA+GGG + tig0018912:40895-40914 Msa1369780:three_prime_UTR 20.0%
! CAGAATTGATCACTAAATTA+GGG - tig0018912:37453-37472 None:intergenic 25.0%
! TCAGAATTGATCACTAAATT+AGG - tig0018912:37454-37473 None:intergenic 25.0%
! TAATTCAATGTGATCACATA+TGG - tig0018912:37880-37899 None:intergenic 25.0%
! TAACTTTGCACAGTTAAAAT+AGG - tig0018912:37973-37992 None:intergenic 25.0%
!!! TTTTAACTGTGCAAAGTTAT+TGG + tig0018912:37974-37993 Msa1369780:intron 25.0%
! TGATGTATTTATGTTGTTGA+AGG + tig0018912:38110-38129 Msa1369780:intron 25.0%
! GATGTATTTATGTTGTTGAA+GGG + tig0018912:38111-38130 Msa1369780:intron 25.0%
! AAATTAATGTTGCAAAATGC+AGG + tig0018912:38592-38611 Msa1369780:intron 25.0%
! AATTAATGTTGCAAAATGCA+GGG + tig0018912:38593-38612 Msa1369780:intron 25.0%
! GATTGTATTATACCTCATTT+AGG - tig0018912:38803-38822 None:intergenic 25.0%
! AAGTTGAAATGAATTTGCAA+TGG + tig0018912:38982-39001 Msa1369780:intron 25.0%
! AACTCATAGTGCATAATATT+TGG + tig0018912:39324-39343 Msa1369780:intron 25.0%
!!! TGAAAAGAAAAAGTACTAAC+TGG - tig0018912:39445-39464 None:intergenic 25.0%
! AATTCTAGTAGATTGATTAC+TGG + tig0018912:39844-39863 Msa1369780:CDS 25.0%
! ATTCTAGTAGATTGATTACT+GGG + tig0018912:39845-39864 Msa1369780:CDS 25.0%
! AATAACAGATCGATTATCAT+TGG - tig0018912:39968-39987 None:intergenic 25.0%
! AATATTTCCATTTCGAGAAA+GGG - tig0018912:40340-40359 None:intergenic 25.0%
! CATATATGGTCAATATCTAA+AGG + tig0018912:40528-40547 Msa1369780:CDS 25.0%
!!! CAGTTTTAAGAAAATCTAAC+AGG + tig0018912:40695-40714 Msa1369780:three_prime_UTR 25.0%
! TTAAGAAAATCTAACAGGTA+TGG + tig0018912:40700-40719 Msa1369780:three_prime_UTR 25.0%
! TAAGAAAATCTAACAGGTAT+GGG + tig0018912:40701-40720 Msa1369780:three_prime_UTR 25.0%
!! TTTACAGTTTTTAAATTGGC+TGG + tig0018912:40770-40789 Msa1369780:three_prime_UTR 25.0%
! CTTTAGATATTAAGTAAGAC+TGG - tig0018912:40896-40915 None:intergenic 25.0%
! CAGTCTTACTTAATATCTAA+AGG + tig0018912:40894-40913 Msa1369780:three_prime_UTR 25.0%
ATGATCTACTTATTTGTACG+TGG + tig0018912:37369-37388 Msa1369780:five_prime_UTR 30.0%
TGATCTACTTATTTGTACGT+GGG + tig0018912:37370-37389 Msa1369780:five_prime_UTR 30.0%
!! TTCTGATTCGAATGATTTTC+AGG - tig0018912:37423-37442 None:intergenic 30.0%
! ACTACTAAGCACTATTCTTT+TGG - tig0018912:37777-37796 None:intergenic 30.0%
AATGCTATAAAGCTCAATCT+CGG + tig0018912:38181-38200 Msa1369780:CDS 30.0%
! TGCATTTTCTTTCTCTTGAA+GGG - tig0018912:38259-38278 None:intergenic 30.0%
! TTGCATTTTCTTTCTCTTGA+AGG - tig0018912:38260-38279 None:intergenic 30.0%
! TAGCTGCTATTTAACAACAT+TGG - tig0018912:38345-38364 None:intergenic 30.0%
CAAATTCTGCTATGGTATAA+CGG - tig0018912:38373-38392 None:intergenic 30.0%
AGTGTATCTTGAAACTATAG+CGG - tig0018912:38402-38421 None:intergenic 30.0%
TACAAAATGTTGTCCAATAG+CGG + tig0018912:38428-38447 Msa1369780:intron 30.0%
ACTAAAAAAAATGTTGGTCG+CGG - tig0018912:38547-38566 None:intergenic 30.0%
TCGCAGACTAAAAAAAATGT+TGG - tig0018912:38553-38572 None:intergenic 30.0%
CTCTCAATTAAAGACAGATT+TGG + tig0018912:38623-38642 Msa1369780:CDS 30.0%
! TCATCTTTTCTAACATCAAG+CGG - tig0018912:38767-38786 None:intergenic 30.0%
CTTGATGTTAGAAAAGATGA+AGG + tig0018912:38767-38786 Msa1369780:CDS 30.0%
TAGTTCCAAAAGTTGTATAC+TGG - tig0018912:38838-38857 None:intergenic 30.0%
!!! ACTTTTTTATCAGCACTTGA+AGG + tig0018912:38953-38972 Msa1369780:intron 30.0%
TCAAACAACTATCTTTGACA+AGG - tig0018912:39015-39034 None:intergenic 30.0%
AAAGATAGTTGTTTGACTGT+AGG + tig0018912:39019-39038 Msa1369780:intron 30.0%
!!! TGTACCTCAATTTTTTCAGA+AGG + tig0018912:39056-39075 Msa1369780:intron 30.0%
! AGAACCTTCTGAAAAAATTG+AGG - tig0018912:39063-39082 None:intergenic 30.0%
AAGTACATCAAATCCAATGT+TGG - tig0018912:39247-39266 None:intergenic 30.0%
AATACATTTCCCATCTCTTT+AGG + tig0018912:39624-39643 Msa1369780:intron 30.0%
ATTTAGCCTGTATTTGCAAT+TGG - tig0018912:39785-39804 None:intergenic 30.0%
AGAATTGTACTCGAACAATA+AGG - tig0018912:39830-39849 None:intergenic 30.0%
TTCTAGTAGATTGATTACTG+GGG + tig0018912:39846-39865 Msa1369780:CDS 30.0%
! AGTCCCAAACTTTTATAGTA+CGG - tig0018912:40134-40153 None:intergenic 30.0%
CAATATTTCCATTTCGAGAA+AGG - tig0018912:40341-40360 None:intergenic 30.0%
TGAAATAATCAGTACTCTGA+AGG + tig0018912:40551-40570 Msa1369780:CDS 30.0%
TTGTTTCAATCTGGTCATAA+TGG + tig0018912:40649-40668 Msa1369780:CDS 30.0%
AATTTATCTAACCATGCCAT+TGG + tig0018912:40979-40998 Msa1369780:three_prime_UTR 30.0%
!! TGATTCGAATGATTTTCAGG+TGG - tig0018912:37420-37439 None:intergenic 35.0%
ACCAAACACAACAACAACAA+TGG + tig0018912:37475-37494 Msa1369780:exon 35.0%
! ACCATTGTTGTTGTTGTGTT+TGG - tig0018912:37479-37498 None:intergenic 35.0%
ACAACAACAATGGTGAAAAC+TGG + tig0018912:37485-37504 Msa1369780:exon 35.0%
! TCAATCGCAACTTGTTCTTT+CGG - tig0018912:37515-37534 None:intergenic 35.0%
TTCTTACGGATCCACAATAA+AGG - tig0018912:37735-37754 None:intergenic 35.0%
ACTTCTGATTGAATGTGTGT+TGG + tig0018912:37826-37845 Msa1369780:intron 35.0%
TTCAGAATGTTGCTCGATAT+TGG + tig0018912:38015-38034 Msa1369780:intron 35.0%
!!! AGCTTTTGAAACTCTAGACT+CGG - tig0018912:38235-38254 None:intergenic 35.0%
TGCAATTTCTGATATGCAGA+AGG + tig0018912:38275-38294 Msa1369780:CDS 35.0%
CGTTATACCATAGCAGAATT+TGG + tig0018912:38371-38390 Msa1369780:intron 35.0%
TCGAGAATAGCAGAAAATAG+TGG - tig0018912:38505-38524 None:intergenic 35.0%
CTATTCTCGATTGACAACAT+TGG + tig0018912:38515-38534 Msa1369780:intron 35.0%
! TTCAGAACTAAAAGCACAAC+TGG + tig0018912:38686-38705 Msa1369780:CDS 35.0%
! CTATACATTTTCCGTGTGAA+TGG + tig0018912:38870-38889 Msa1369780:intron 35.0%
!! ATTTTCCGTGTGAATGGATT+TGG + tig0018912:38876-38895 Msa1369780:intron 35.0%
AAACTAAGCTTCAAGCTTGT+AGG - tig0018912:39180-39199 None:intergenic 35.0%
AAATGCGCTATATGAAGACA+TGG + tig0018912:39648-39667 Msa1369780:CDS 35.0%
TATATGAAGACATGGTTCAG+CGG + tig0018912:39656-39675 Msa1369780:CDS 35.0%
TCTAGTAGATTGATTACTGG+GGG + tig0018912:39847-39866 Msa1369780:CDS 35.0%
AAAGTGTGGGATACAAATAC+AGG + tig0018912:39886-39905 Msa1369780:CDS 35.0%
TCCTTAAGTTCAAGTCTTAC+TGG + tig0018912:39910-39929 Msa1369780:CDS 35.0%
CTCAAACAACTTGTATGTGT+GGG + tig0018912:39999-40018 Msa1369780:CDS 35.0%
ACGACCGTACTATAAAAGTT+TGG + tig0018912:40127-40146 Msa1369780:CDS 35.0%
CGACCGTACTATAAAAGTTT+GGG + tig0018912:40128-40147 Msa1369780:CDS 35.0%
! AAAGTTTGGGACTTGATGAA+AGG + tig0018912:40141-40160 Msa1369780:CDS 35.0%
ATCGACATGTCCAGAAAATA+TGG - tig0018912:40235-40254 None:intergenic 35.0%
! ATATTTTCTGGACATGTCGA+TGG + tig0018912:40234-40253 Msa1369780:CDS 35.0%
TCAATATCCCTTTCTCGAAA+TGG + tig0018912:40330-40349 Msa1369780:CDS 35.0%
TTAACAGAGTGGCTTCTAAT+TGG + tig0018912:40442-40461 Msa1369780:CDS 35.0%
GGAATGGAATTGTTTCAATC+TGG + tig0018912:40640-40659 Msa1369780:CDS 35.0%
TTTCTATCTGGTCATAGTGA+CGG + tig0018912:40728-40747 Msa1369780:three_prime_UTR 35.0%
! AAGTTGTTCCTTGTTTAGAC+AGG + tig0018912:40807-40826 Msa1369780:three_prime_UTR 35.0%
! TTGTACGTGGGACCTATTTT+CGG + tig0018912:37382-37401 Msa1369780:five_prime_UTR 40.0%
AGACTAGAGAGACCGAAAAT+AGG - tig0018912:37397-37416 None:intergenic 40.0%
GTTATTAACTCTTGTAGCGC+CGG + tig0018912:37802-37821 Msa1369780:intron 40.0%
! ACACATTCAATCAGAAGTGC+CGG - tig0018912:37824-37843 None:intergenic 40.0%
!! GCTCGATATTGGTGTTAAGT+TGG + tig0018912:38026-38045 Msa1369780:intron 40.0%
!! TTGGTGTTAAGTTGGTTGCT+TGG + tig0018912:38034-38053 Msa1369780:intron 40.0%
TTGGTTGCTTGGATAGTTGA+TGG + tig0018912:38045-38064 Msa1369780:intron 40.0%
!!! TGTTGTTGAAGGGTTTTGAG+TGG + tig0018912:38121-38140 Msa1369780:intron 40.0%
GAAAGAGAAAGCAGAGAACT+TGG + tig0018912:38143-38162 Msa1369780:CDS 40.0%
TACTTCCACAACAAGTTGCT+CGG - tig0018912:38211-38230 None:intergenic 40.0%
AGAAGGAGTTGACAGAATTG+AGG + tig0018912:38292-38311 Msa1369780:CDS 40.0%
GGTTTGTCCAAATTCTGCTA+TGG - tig0018912:38381-38400 None:intergenic 40.0%
GCTATAGCACTATTGTGTAG+CGG + tig0018912:38467-38486 Msa1369780:intron 40.0%
! CTCGTCCAGTATACAACTTT+TGG + tig0018912:38830-38849 Msa1369780:intron 40.0%
CAAAGCCAAATCCATTCACA+CGG - tig0018912:38884-38903 None:intergenic 40.0%
CAGCAATTTCACACCAACAT+TGG + tig0018912:39231-39250 Msa1369780:intron 40.0%
!! GTTCACATCATAGTCTTGTG+AGG - tig0018912:39542-39561 None:intergenic 40.0%
! TGGTCTAGAACAACTTGCAA+GGG + tig0018912:39690-39709 Msa1369780:CDS 40.0%
ATTGTTCGTCGAAGTGAAGA+AGG + tig0018912:39727-39746 Msa1369780:CDS 40.0%
TCCCTTCCAATTGCAAATAC+AGG + tig0018912:39776-39795 Msa1369780:CDS 40.0%
GCCTGTATTTGCAATTGGAA+GGG - tig0018912:39780-39799 None:intergenic 40.0%
AGCCTGTATTTGCAATTGGA+AGG - tig0018912:39781-39800 None:intergenic 40.0%
TACAGGCTAAATGCACATGA+AGG + tig0018912:39793-39812 Msa1369780:CDS 40.0%
AGGATCGTTCAGTTAAAGTG+TGG + tig0018912:39872-39891 Msa1369780:CDS 40.0%
GGATCGTTCAGTTAAAGTGT+GGG + tig0018912:39873-39892 Msa1369780:CDS 40.0%
GCCAGTAAGACTTGAACTTA+AGG - tig0018912:39914-39933 None:intergenic 40.0%
GCTCAAACAACTTGTATGTG+TGG + tig0018912:39998-40017 Msa1369780:CDS 40.0%
TTTATCCGTGTGTCCAGTAA+GGG - tig0018912:40052-40071 None:intergenic 40.0%
ACACACGGATAAAGTTTGTG+CGG + tig0018912:40059-40078 Msa1369780:CDS 40.0%
! GATGGACAGACCATATTTTC+TGG + tig0018912:40222-40241 Msa1369780:CDS 40.0%
GACATGTCGATGGTAATCTT+CGG + tig0018912:40244-40263 Msa1369780:CDS 40.0%
TCGATGGTAATCTTCGGTTA+TGG + tig0018912:40250-40269 Msa1369780:CDS 40.0%
CGATGGTAATCTTCGGTTAT+GGG + tig0018912:40251-40270 Msa1369780:CDS 40.0%
AGAAAGGGATATTGACGTGA+CGG - tig0018912:40325-40344 None:intergenic 40.0%
! GGAAATATTGCATTGACCAG+TGG + tig0018912:40351-40370 Msa1369780:CDS 40.0%
! ATATTGCATTGACCAGTGGT+AGG + tig0018912:40355-40374 Msa1369780:CDS 40.0%
! TATTGCATTGACCAGTGGTA+GGG + tig0018912:40356-40375 Msa1369780:CDS 40.0%
TTTGTTTGATGTGCGATCTC+TGG + tig0018912:40392-40411 Msa1369780:CDS 40.0%
! CTGATGGATCTGTGCATATA+TGG + tig0018912:40514-40533 Msa1369780:CDS 40.0%
!! GGTATGGGATTGTTTCTATC+TGG + tig0018912:40716-40735 Msa1369780:three_prime_UTR 40.0%
AATGGTGTCCTGTCTAAACA+AGG - tig0018912:40818-40837 None:intergenic 40.0%
GGTAATTAACCTAGGAACAG+CGG + tig0018912:41007-41026 Msa1369780:three_prime_UTR 40.0%
AAACGCCATCTTCTCGAAGA+AGG + tig0018912:37566-37585 Msa1369780:CDS 45.0%
! CTAGAAAGTGCGAGAAAAGC+AGG - tig0018912:37602-37621 None:intergenic 45.0%
TTCTAGACCCATCGTTTCTC+AGG + tig0018912:37616-37635 Msa1369780:CDS 45.0%
GTACGTACCTGAGAAACGAT+GGG - tig0018912:37626-37645 None:intergenic 45.0%
! TGTTGGTGTCTGACATGTGT+CGG + tig0018912:37843-37862 Msa1369780:intron 45.0%
GAAAGCAGAGAACTTGGAAG+TGG + tig0018912:38149-38168 Msa1369780:CDS 45.0%
!! GTTATCCGAGCAACTTGTTG+TGG + tig0018912:38203-38222 Msa1369780:CDS 45.0%
TTGTCCAATAGCGGCTATAG+TGG + tig0018912:38437-38456 Msa1369780:intron 45.0%
! CGTGTGAATGGATTTGGCTT+TGG + tig0018912:38882-38901 Msa1369780:intron 45.0%
GGCAAGTTGTGCAATCTTGA+CGG + tig0018912:38903-38922 Msa1369780:intron 45.0%
AGGTAAATGACACTTGCCAG+TGG - tig0018912:39208-39227 None:intergenic 45.0%
TTGGTGTGAAATTGCTGAGC+AGG - tig0018912:39228-39247 None:intergenic 45.0%
GTTCACAACACAGTCTCGTT+AGG - tig0018912:39398-39417 None:intergenic 45.0%
GCGCATTTGCCTAAAGAGAT+GGG - tig0018912:39636-39655 None:intergenic 45.0%
AGCGCATTTGCCTAAAGAGA+TGG - tig0018912:39637-39656 None:intergenic 45.0%
! GTGGTCTAGAACAACTTGCA+AGG + tig0018912:39689-39708 Msa1369780:CDS 45.0%
ACAACTTGCAAGGGAACAAG+TGG + tig0018912:39699-39718 Msa1369780:CDS 45.0%
AGGCTAAATGCACATGAAGG+AGG + tig0018912:39796-39815 Msa1369780:CDS 45.0%
TAGATTGATTACTGGGGGAC+AGG + tig0018912:39852-39871 Msa1369780:CDS 45.0%
TGAGATCCAATACTGAGCCA+AGG - tig0018912:39939-39958 None:intergenic 45.0%
TATGTGTGGGATCTTAGCTC+AGG + tig0018912:40012-40031 Msa1369780:CDS 45.0%
! TGTGTCCAGTAAGGGTATGA+CGG - tig0018912:40044-40063 None:intergenic 45.0%
TCATACCCTTACTGGACACA+CGG + tig0018912:40044-40063 Msa1369780:CDS 45.0%
CTTTATCCGTGTGTCCAGTA+AGG - tig0018912:40053-40072 None:intergenic 45.0%
! TTGTGCGGTTGATGTTAGCA+AGG + tig0018912:40074-40093 Msa1369780:CDS 45.0%
!! CAAAGAGCATTGCAGTTGCT+GGG - tig0018912:40192-40211 None:intergenic 45.0%
TATGGGACATTCAGAGTGGA+AGG + tig0018912:40268-40287 Msa1369780:CDS 45.0%
GTGCAAATTATCCCTACCAC+TGG - tig0018912:40370-40389 None:intergenic 45.0%
AGAAGCCACTCTGTTAACTG+TGG - tig0018912:40439-40458 None:intergenic 45.0%
ACAACAATCATGTTGCCGCT+GGG + tig0018912:40487-40506 Msa1369780:CDS 45.0%
CTTCTGTTCTCTGTTGTAGC+TGG + tig0018912:40583-40602 Msa1369780:CDS 45.0%
TGTTGTAGCTGGAGTGGAAT+GGG + tig0018912:40594-40613 Msa1369780:CDS 45.0%
ATTCCTGTCAGCTGAAGCTA+GGG - tig0018912:40625-40644 None:intergenic 45.0%
ATCTGGTCATAATGGCTGTG+TGG + tig0018912:40657-40676 Msa1369780:exon 45.0%
TATCTAACCATGCCATTGGC+AGG + tig0018912:40983-41002 Msa1369780:three_prime_UTR 45.0%
GGTTAATTACCACCTGCCAA+TGG - tig0018912:40998-41017 None:intergenic 45.0%
TGGCAGGTGGTAATTAACCT+AGG + tig0018912:40999-41018 Msa1369780:three_prime_UTR 45.0%
GGTACGTACCTGAGAAACGA+TGG - tig0018912:37627-37646 None:intergenic 50.0%
AGCACCACTATAGCCGCTAT+TGG - tig0018912:38444-38463 None:intergenic 50.0%
GGATGCTGAACGCCTAAATG+AGG + tig0018912:38788-38807 Msa1369780:CDS 50.0%
!! AAGCTTAGTTTGCCTGCCAC+TGG + tig0018912:39189-39208 Msa1369780:intron 50.0%
AAATGACACTTGCCAGTGGC+AGG - tig0018912:39204-39223 None:intergenic 50.0%
AAGACATGGTTCAGCGGCTA+AGG + tig0018912:39662-39681 Msa1369780:CDS 50.0%
AGACATGGTTCAGCGGCTAA+GGG + tig0018912:39663-39682 Msa1369780:CDS 50.0%
CTTGCAAGGGAACAAGTGGA+TGG + tig0018912:39703-39722 Msa1369780:CDS 50.0%
! TCAAGTCTTACTGGCTGCCT+TGG + tig0018912:39919-39938 Msa1369780:CDS 50.0%
!! GCAAAGAGCATTGCAGTTGC+TGG - tig0018912:40193-40212 None:intergenic 50.0%
GCTCTTTGCTTCAGCACAGA+TGG + tig0018912:40204-40223 Msa1369780:CDS 50.0%
CGGTTATGGGACATTCAGAG+TGG + tig0018912:40264-40283 Msa1369780:CDS 50.0%
! GTGCGATCTCTGGAAGTTTG+TGG + tig0018912:40402-40421 Msa1369780:CDS 50.0%
ACGAGCCACAGTTAACAGAG+TGG + tig0018912:40431-40450 Msa1369780:CDS 50.0%
GCGGCAACATGATTGTTGTC+TGG - tig0018912:40486-40505 None:intergenic 50.0%
GACAACAATCATGTTGCCGC+TGG + tig0018912:40486-40505 Msa1369780:CDS 50.0%
AGATCCATCAGTAGACCCAG+CGG - tig0018912:40505-40524 None:intergenic 50.0%
GTTCTCTGTTGTAGCTGGAG+TGG + tig0018912:40588-40607 Msa1369780:CDS 50.0%
CTGTTGTAGCTGGAGTGGAA+TGG + tig0018912:40593-40612 Msa1369780:CDS 50.0%
TTCCTGTCAGCTGAAGCTAG+GGG - tig0018912:40624-40643 None:intergenic 50.0%
CATTCCTGTCAGCTGAAGCT+AGG - tig0018912:40626-40645 None:intergenic 50.0%
CTAGCTTCAGCTGACAGGAA+TGG + tig0018912:40624-40643 Msa1369780:CDS 50.0%
ATCTGGTCATAGTGACGGTG+TGG + tig0018912:40733-40752 Msa1369780:three_prime_UTR 50.0%
ATTACCACCTGCCAATGGCA+TGG - tig0018912:40993-41012 None:intergenic 50.0%
GAGCGCCTTCTTCGAGAAGA+TGG - tig0018912:37574-37593 None:intergenic 55.0%
TGGCTGCCTTGGCTCAGTAT+TGG + tig0018912:39930-39949 Msa1369780:CDS 55.0%
CGAGTCCGTCATACCCTTAC+TGG + tig0018912:40036-40055 Msa1369780:CDS 55.0%
GAGTGGAAGGCTGCTAAGTG+AGG + tig0018912:40281-40300 Msa1369780:CDS 55.0%
AACCCCTAGCTTCAGCTGAC+AGG + tig0018912:40619-40638 Msa1369780:CDS 55.0%
CTAACCATGCCATTGGCAGG+TGG + tig0018912:40986-41005 Msa1369780:three_prime_UTR 55.0%
GTTCAGCGGCTAAGGGCTAG+TGG + tig0018912:39670-39689 Msa1369780:CDS 60.0%
GTTGCCGCTGGGTCTACTGA+TGG + tig0018912:40498-40517 Msa1369780:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0018912 gene 37362 41031 37362 ID=Msa1369780;Name=Msa1369780
tig0018912 mRNA 37362 41031 37362 ID=Msa1369780-mRNA-1;Parent=Msa1369780;Name=Msa1369780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|4|363|514
tig0018912 exon 37362 37637 37362 ID=Msa1369780-mRNA-1:exon:1336;Parent=Msa1369780-mRNA-1
tig0018912 exon 38132 38313 38132 ID=Msa1369780-mRNA-1:exon:1337;Parent=Msa1369780-mRNA-1
tig0018912 exon 38614 38809 38614 ID=Msa1369780-mRNA-1:exon:1338;Parent=Msa1369780-mRNA-1
tig0018912 exon 39646 41031 39646 ID=Msa1369780-mRNA-1:exon:1339;Parent=Msa1369780-mRNA-1
tig0018912 five_prime_UTR 37362 37493 37362 ID=Msa1369780-mRNA-1:five_prime_utr;Parent=Msa1369780-mRNA-1
tig0018912 CDS 37494 37637 37494 ID=Msa1369780-mRNA-1:cds;Parent=Msa1369780-mRNA-1
tig0018912 CDS 38132 38313 38132 ID=Msa1369780-mRNA-1:cds;Parent=Msa1369780-mRNA-1
tig0018912 CDS 38614 38809 38614 ID=Msa1369780-mRNA-1:cds;Parent=Msa1369780-mRNA-1
tig0018912 CDS 39646 40668 39646 ID=Msa1369780-mRNA-1:cds;Parent=Msa1369780-mRNA-1
tig0018912 three_prime_UTR 40669 41031 40669 ID=Msa1369780-mRNA-1:three_prime_utr;Parent=Msa1369780-mRNA-1
Gene Sequence

>Msa1369780

ATGGTGAAAACTGGAAGACCGAAAGAACAAGTTGCGATTGATGCAATCAATTATGCTATGAAAGCTCTCAAGAAACGCCATCTTCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATCGTTTCTCAGGGTTTTGAGTGGAAAGAGAAAGCAGAGAACTTGGAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTATCCGAGCAACTTGTTGTGGAAGTAGCCGAGTCTAGAGTTTCAAAAGCTTCCCTTCAAGAGAAAGAAAATGCAATTTCTGATATGCAGAAGGAGTTGACAGAATTGAGGGATGAGTGCTCTCAATTAAAGACAGATTTGGAGCAAAAGACTAAAGAAGTAGAATTAGTTCTTAGCGAGAATTCAGAACTAAAAGCACAACTGGAGCAGATGACTACTAAAGCTAATGAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTTGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCGCTATATGAAGACATGGTTCAGCGGCTAAGGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAAGTGGATGGAATTGTTCGTCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCAATTGCAAATACAGGCTAAATGCACATGAAGGAGGTTGTGCTTCCTTATTGTTCGAGTACAATTCTAGTAGATTGATTACTGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCCTTAAGTTCAAGTCTTACTGGCTGCCTTGGCTCAGTATTGGATCTCACTATCACCAATGATAATCGATCTGTTATTGCTGCGAGCAGCTCAAACAACTTGTATGTGTGGGATCTTAGCTCAGGTCGAGTCCGTCATACCCTTACTGGACACACGGATAAAGTTTGTGCGGTTGATGTTAGCAAGGTTTCGAGTCGTCTTGTTGTCAGTGCAGCTTACGACCGTACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAACACAATCATGTTTCCCAGCAACTGCAATGCTCTTTGCTTCAGCACAGATGGACAGACCATATTTTCTGGACATGTCGATGGTAATCTTCGGTTATGGGACATTCAGAGTGGAAGGCTGCTAAGTGAGGTTGCTGCACATTCACACGCCGTCACGTCAATATCCCTTTCTCGAAATGGAAATATTGCATTGACCAGTGGTAGGGATAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGTACATTACGAGCCACAGTTAACAGAGTGGCTTCTAATTGGAGTCGCTCATGTATCAGTCCAGACAACAATCATGTTGCCGCTGGGTCTACTGATGGATCTGTGCATATATGGTCAATATCTAAAGGTGAAATAATCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTCTGTTGTAGCTGGAGTGGAATGGGAAAACCCCTAGCTTCAGCTGACAGGAATGGAATTGTTTCAATCTGGTCATAA

Protein sequence

>Msa1369780

MVKTGRPKEQVAIDAINYAMKALKKRHLLEEGAHAPAFLALSRPIVSQGFEWKEKAENLEVELQQCYKAQSRLSEQLVVEVAESRVSKASLQEKENAISDMQKELTELRDECSQLKTDLEQKTKEVELVLSENSELKAQLEQMTTKANEAEAENKMLIDRLMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSNCKYRLNAHEGGCASLLFEYNSSRLITGGQDRSVKVWDTNTGSLSSSLTGCLGSVLDLTITNDNRSVIAASSSNNLYVWDLSSGRVRHTLTGHTDKVCAVDVSKVSSRLVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSTDGQTIFSGHVDGNLRLWDIQSGRLLSEVAAHSHAVTSISLSRNGNIALTSGRDNLHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNNHVAAGSTDGSVHIWSISKGEIISTLKEHTSSVLCCSWSGMGKPLASADRNGIVSIWS*