AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0285130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0285130 MtrunA17_Chr2g0301241 98.031 254 5 0 1 254 1 254 0.0 501
Msa0285130 MtrunA17_Chr4g0070201 74.409 254 64 1 1 254 1 253 7.02e-139 390
Msa0285130 MtrunA17_Chr3g0139681 38.947 95 56 2 159 253 3 95 4.37e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0285130 AT5G20720.1 71.094 256 69 2 1 254 1 253 9.27e-129 365
Msa0285130 AT5G20720.2 71.094 256 69 2 1 254 1 253 9.27e-129 365
Msa0285130 AT5G20720.4 71.094 256 69 2 1 254 1 253 9.27e-129 365
Msa0285130 AT5G20720.3 71.094 256 69 2 1 254 1 253 9.27e-129 365

Find 96 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCAGCGTATT+TGG 0.227055 2_3:-24465370 None:intergenic
GTATAAATGTTTAGTAAGTT+TGG 0.292098 2_3:-24462398 None:intergenic
TTTCTCAAATATTGCTCATC+TGG 0.297071 2_3:-24465635 None:intergenic
CTCCCTCCAACAACAAATTA+AGG 0.319859 2_3:+24462596 Msa0285130:five_prime_UTR
CTTAAACTACTAACTAAAAC+TGG 0.340415 2_3:-24465847 None:intergenic
CAGGTGGTAGCAGTTGGTCC+TGG 0.340730 2_3:+24465282 Msa0285130:intron
AAGTGATTCCTAACGGGAAC+TGG 0.346232 2_3:+24465510 Msa0285130:three_prime_UTR
GCAATATTTGAGAAACAAAT+AGG 0.350657 2_3:+24465643 Msa0285130:three_prime_UTR
TGTCATGGCTGTACTCTCTT+AGG 0.357059 2_3:+24465437 Msa0285130:CDS
CGATAAGATGCATTTGATAA+TGG 0.373981 2_3:+24465741 Msa0285130:three_prime_UTR
TGCTTACCTTAATTTGTTGT+TGG 0.376179 2_3:-24462602 None:intergenic
TTCATTCTGCTCGACATGTT+AGG 0.390168 2_3:+24462812 Msa0285130:CDS
ACCAAGGAGAAGCCTTCATT+TGG 0.391255 2_3:+24464949 Msa0285130:CDS
GTACACTGCAATCAAGCCTT+TGG 0.401887 2_3:+24464012 Msa0285130:intron
CAATCAAGCCTTTGGGTGAC+AGG 0.402537 2_3:+24464020 Msa0285130:CDS
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2_3:-24464097 None:intergenic
TTACCTTAATTTGTTGTTGG+AGG 0.408292 2_3:-24462599 None:intergenic
GAACGATAGAGTTCTGATAA+AGG 0.408424 2_3:+24464444 Msa0285130:CDS
TAATTGAAAGGTATCTATCT+TGG 0.415866 2_3:+24465793 Msa0285130:three_prime_UTR
TATCAGAACTCTATCGTTCA+AGG 0.418147 2_3:-24464440 None:intergenic
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2_3:+24462843 Msa0285130:CDS
GAATGAAACTGAACACTTGA+TGG 0.432793 2_3:-24462796 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2_3:-24464171 None:intergenic
CTGAAAGATGATGACATTGT+TGG 0.437849 2_3:+24464382 Msa0285130:CDS
CCTTGATATCATCAGTTTCA+AGG 0.440736 2_3:-24464408 None:intergenic
ATACGCTGGTAATGACTTCA+AGG 0.442105 2_3:+24465374 Msa0285130:CDS
TCCAAATGAAGGCTTCTCCT+TGG 0.442638 2_3:-24464950 None:intergenic
TTGGACAGTGAAACTGTAAA+TGG 0.445194 2_3:+24462708 Msa0285130:intron
AAGCTTACTGTTCCAAATGA+AGG 0.450153 2_3:-24464961 None:intergenic
TACCTTAATTTGTTGTTGGA+GGG 0.450509 2_3:-24462598 None:intergenic
AGGAGCGTTGCATCCTTTGA+AGG 0.455252 2_3:+24462766 Msa0285130:CDS
TGGTCCTGGGCTTGTGGATG+AGG 0.455398 2_3:+24465296 Msa0285130:CDS
AATGACTTCAAGGGCAAAGA+TGG 0.468491 2_3:+24465384 Msa0285130:CDS
ATAGATTGGGTGAGATAAAG+TGG 0.473774 2_3:-24462570 None:intergenic
ATTACCAAGTGATTCCTAAC+GGG 0.475609 2_3:+24465504 Msa0285130:three_prime_UTR
CCTTGAAACTGATGATATCA+AGG 0.481354 2_3:+24464408 Msa0285130:CDS
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2_3:-24462857 None:intergenic
AATTGAAAGGTATCTATCTT+GGG 0.489770 2_3:+24465794 Msa0285130:three_prime_UTR
TACACTGCAATCAAGCCTTT+GGG 0.491403 2_3:+24464013 Msa0285130:CDS
TTGAAAACCCAGTTCCCGTT+AGG 0.491683 2_3:-24465518 None:intergenic
AGGTGGTAGCAGTTGGTCCT+GGG 0.491754 2_3:+24465283 Msa0285130:intron
TTGGAGGGAGTAGATAGATT+GGG 0.493736 2_3:-24462583 None:intergenic
ATATATGCTGCAGATTGAAA+AGG 0.493775 2_3:+24464885 Msa0285130:intron
AAACCTTTGACTGTTACTCC+TGG 0.503322 2_3:+24465330 Msa0285130:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2_3:+24462817 Msa0285130:CDS
AGCAGTTGGTCCTGGGCTTG+TGG 0.507384 2_3:+24465290 Msa0285130:CDS
GTTGGAGGGAGTAGATAGAT+TGG 0.507966 2_3:-24462584 None:intergenic
TTCAAAGTATGCTGGTACTG+AGG 0.520573 2_3:+24464330 Msa0285130:CDS
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2_3:-24462844 None:intergenic
GAGGTGGTTGCCGTTGGAGA+AGG 0.528875 2_3:+24464130 Msa0285130:CDS
CTTGAGGAGTTCAGATGTCA+TGG 0.532308 2_3:+24465422 Msa0285130:CDS
CAGCTCCAGGTATAATTGAA+AGG 0.532327 2_3:+24465781 Msa0285130:three_prime_UTR
GGTACTGAGGTGGACTTCAA+TGG 0.535132 2_3:+24464343 Msa0285130:CDS
ATCAGAACTCTATCGTTCAA+GGG 0.538758 2_3:-24464439 None:intergenic
GAGTACAGAACTGTGTTCCC+AGG 0.548022 2_3:-24465348 None:intergenic
TTCCCAGGAGTAACAGTCAA+AGG 0.549921 2_3:-24465333 None:intergenic
CTCAAATATTGCTCATCTGG+TGG 0.553558 2_3:-24465632 None:intergenic
GTTGTCTATTCAAAGTATGC+TGG 0.560205 2_3:+24464322 Msa0285130:CDS
GGAGGTGAGGTGGTTGCCGT+TGG 0.560930 2_3:+24464124 Msa0285130:CDS
AACCTTTGACTGTTACTCCT+GGG 0.561302 2_3:+24465331 Msa0285130:CDS
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2_3:+24464171 Msa0285130:CDS
AGATACCTTTCAATTATACC+TGG 0.567619 2_3:-24465786 None:intergenic
AAGTGTCTTTCCTTCTCCAA+CGG 0.569767 2_3:-24464140 None:intergenic
CCTGGGCTTGTGGATGAGGA+AGG 0.570612 2_3:+24465300 Msa0285130:CDS
CCTTCCTCATCCACAAGCCC+AGG 0.574958 2_3:-24465300 None:intergenic
GAATAGACAACTTGTGCACC+TGG 0.575907 2_3:-24464310 None:intergenic
GATTACCAAGTGATTCCTAA+CGG 0.577576 2_3:+24465503 Msa0285130:three_prime_UTR
GTTGGAGAAGGAAAGACACT+TGG 0.579860 2_3:+24464142 Msa0285130:CDS
AGTGATTCCTAACGGGAACT+GGG 0.582781 2_3:+24465511 Msa0285130:three_prime_UTR
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2_3:+24464924 Msa0285130:CDS
ATGTCACAGGTGGTAGCAGT+TGG 0.591495 2_3:+24465276 Msa0285130:intron
CAGAAGAGAAGACACAGAGT+GGG 0.596412 2_3:+24464065 Msa0285130:CDS
TGATGGTCGAAGTCCTTCAA+AGG 0.597517 2_3:-24462779 None:intergenic
CATGACATCTGAACTCCTCA+AGG 0.608574 2_3:-24465421 None:intergenic
ATAAGTACCCTGTCACCCAA+AGG 0.609358 2_3:-24464028 None:intergenic
AATCAAGCCTTTGGGTGACA+GGG 0.609714 2_3:+24464021 Msa0285130:CDS
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2_3:+24464933 Msa0285130:CDS
AACAAAGCCTCAAGGAGGTG+AGG 0.613391 2_3:+24464111 Msa0285130:CDS
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2_3:+24464888 Msa0285130:intron
AAAGTATGCTGGTACTGAGG+TGG 0.625111 2_3:+24464333 Msa0285130:CDS
TTTGATAATGGAAAATCATG+TGG 0.627825 2_3:+24465753 Msa0285130:three_prime_UTR
AGTTCCCGTTAGGAATCACT+TGG 0.628468 2_3:-24465508 None:intergenic
GCAGAAGAGAAGACACAGAG+TGG 0.638010 2_3:+24464064 Msa0285130:CDS
AGTGCTCAAACAAAGCCTCA+AGG 0.651229 2_3:+24464103 Msa0285130:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2_3:+24462833 Msa0285130:CDS
TACGCTGGTAATGACTTCAA+GGG 0.655719 2_3:+24465375 Msa0285130:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.658187 2_3:+24464143 Msa0285130:CDS
TCTTATCTAATAAATGACAA+AGG 0.658340 2_3:-24465599 None:intergenic
GCAACCACCTCACCTCCTTG+AGG 0.660430 2_3:-24464118 None:intergenic
AAAGCCTCAAGGAGGTGAGG+TGG 0.661356 2_3:+24464114 Msa0285130:CDS
TGAAAGGTATCTATCTTGGG+AGG 0.670598 2_3:+24465797 Msa0285130:three_prime_UTR
ATCACTTGGTAATCAAAACA+AGG 0.676030 2_3:-24465494 None:intergenic
GTTCTGTACTCCAAATACGC+TGG 0.690424 2_3:+24465360 Msa0285130:CDS
CAGCATCATCAATTTCAACG+AGG 0.718872 2_3:+24462746 Msa0285130:CDS
GCTCAAACAAAGCCTCAAGG+AGG 0.723993 2_3:+24464106 Msa0285130:CDS
AGAATGAAAATAAACCTTGG+GGG 0.751739 2_3:-24462896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTATTATAATGTTTTTT+TGG + chr2_3:24462964-24462983 Msa0285130:intron 15.0%
!!! TGCTATTATAATGTTTTTTT+GGG + chr2_3:24462965-24462984 Msa0285130:intron 15.0%
!! ATCATAAAATTGTTAAAAGA+CGG - chr2_3:24463951-24463970 None:intergenic 15.0%
!!! TTCATTTTTTAATTTTGATC+TGG + chr2_3:24464528-24464547 Msa0285130:intron 15.0%
!! GTATAAATGTTTAGTAAGTT+TGG - chr2_3:24462401-24462420 None:intergenic 20.0%
!!! ATTGCATTCAATTTTTTGTT+TGG - chr2_3:24462425-24462444 None:intergenic 20.0%
!! AAACAAAAAATTGAATGCAA+TGG + chr2_3:24462424-24462443 Msa0285130:five_prime_UTR 20.0%
!! AACAAAAAATTGAATGCAAT+GGG + chr2_3:24462425-24462444 Msa0285130:five_prime_UTR 20.0%
!! CAAACAATAACAAAGATTTA+AGG - chr2_3:24462686-24462705 None:intergenic 20.0%
!! AAAGAATGAAAATAAACCTT+GGG - chr2_3:24462901-24462920 None:intergenic 20.0%
!! AAAAGAATGAAAATAAACCT+TGG - chr2_3:24462902-24462921 None:intergenic 20.0%
!!! ATTTGAGTGTTATTGATAAT+TGG + chr2_3:24463036-24463055 Msa0285130:intron 20.0%
!! GACAATTTGAAAAAGTAATT+CGG + chr2_3:24463414-24463433 Msa0285130:intron 20.0%
!! AATTGTGCATCAAAATTAAA+GGG - chr2_3:24463636-24463655 None:intergenic 20.0%
!! AAATTGTGCATCAAAATTAA+AGG - chr2_3:24463637-24463656 None:intergenic 20.0%
!!! ATCGTTCTTTAATTTTTCTT+GGG + chr2_3:24464232-24464251 Msa0285130:intron 20.0%
!! ATACATTAACTATAGAGATA+AGG - chr2_3:24465099-24465118 None:intergenic 20.0%
!! AAAAACATTGTTGTAATACT+TGG + chr2_3:24465253-24465272 Msa0285130:intron 20.0%
!! TCTTATCTAATAAATGACAA+AGG - chr2_3:24465602-24465621 None:intergenic 20.0%
! AAAAATTAACAAGATTGGGA+GGG - chr2_3:24462508-24462527 None:intergenic 25.0%
! TAAAAATTAACAAGATTGGG+AGG - chr2_3:24462509-24462528 None:intergenic 25.0%
!! TCCCAATCTTGTTAATTTTT+AGG + chr2_3:24462508-24462527 Msa0285130:five_prime_UTR 25.0%
! CCCTAAAAATTAACAAGATT+GGG - chr2_3:24462512-24462531 None:intergenic 25.0%
!! CCCAATCTTGTTAATTTTTA+GGG + chr2_3:24462509-24462528 Msa0285130:five_prime_UTR 25.0%
! ACCCTAAAAATTAACAAGAT+TGG - chr2_3:24462513-24462532 None:intergenic 25.0%
!!! ATCTTTGTTATTGTTTGTGT+TGG + chr2_3:24462689-24462708 Msa0285130:intron 25.0%
! AAGAATGAAAATAAACCTTG+GGG - chr2_3:24462900-24462919 None:intergenic 25.0%
!!! AAGTTGTTAATTTGCTTAGA+AGG + chr2_3:24463062-24463081 Msa0285130:intron 25.0%
!! ATTTGAGTAAACAACCATTT+TGG + chr2_3:24463144-24463163 Msa0285130:intron 25.0%
!! TTTGAGTAAACAACCATTTT+GGG + chr2_3:24463145-24463164 Msa0285130:intron 25.0%
! ACTTATGTTACACAATTTAG+AGG - chr2_3:24463220-24463239 None:intergenic 25.0%
!!! ATTGAGTTCTGAAAAGATAA+TGG + chr2_3:24463531-24463550 Msa0285130:intron 25.0%
! TTTACTTAGGCATATGTTTA+AGG + chr2_3:24463572-24463591 Msa0285130:intron 25.0%
!!! TACAATTTTGATGTTGAATG+TGG + chr2_3:24463599-24463618 Msa0285130:intron 25.0%
!!! ACAATTTTGATGTTGAATGT+GGG + chr2_3:24463600-24463619 Msa0285130:intron 25.0%
! AATTAACTTAAAAAAGCCTC+TGG - chr2_3:24463704-24463723 None:intergenic 25.0%
! AAACGCATAATTGTTCTATT+TGG + chr2_3:24463901-24463920 Msa0285130:intron 25.0%
!! CAGGGTACTTATAAAAATTA+AGG + chr2_3:24464039-24464058 Msa0285130:CDS 25.0%
!!! GATCGTTCTTTAATTTTTCT+TGG + chr2_3:24464231-24464250 Msa0285130:intron 25.0%
!!! TTTAATTTTTCTTGGGAAGA+AGG + chr2_3:24464239-24464258 Msa0285130:intron 25.0%
!! TTAATTTTTCTTGGGAAGAA+GGG + chr2_3:24464240-24464259 Msa0285130:intron 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG - chr2_3:24464475-24464494 None:intergenic 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG + chr2_3:24464481-24464500 Msa0285130:intron 25.0%
! AGTGATGAAAACAAAATCAA+CGG + chr2_3:24464586-24464605 Msa0285130:intron 25.0%
! CATATTTGCAAATTATCTGA+TGG + chr2_3:24464723-24464742 Msa0285130:intron 25.0%
!! AACATGTTTTCAAACAAAGA+AGG - chr2_3:24464997-24465016 None:intergenic 25.0%
! TTAAATCTTAAGTGGATGTT+GGG - chr2_3:24465028-24465047 None:intergenic 25.0%
! TTTAAATCTTAAGTGGATGT+TGG - chr2_3:24465029-24465048 None:intergenic 25.0%
! TGCTACATTTAAATCTTAAG+TGG - chr2_3:24465036-24465055 None:intergenic 25.0%
!! TATCCTATTTCTCATGAATA+TGG + chr2_3:24465207-24465226 Msa0285130:intron 25.0%
!!! TTTTTCAAACAATGCATCAT+TGG - chr2_3:24465238-24465257 None:intergenic 25.0%
! GCAATATTTGAGAAACAAAT+AGG + chr2_3:24465643-24465662 Msa0285130:three_prime_UTR 25.0%
!!! TTTGATAATGGAAAATCATG+TGG + chr2_3:24465753-24465772 Msa0285130:three_prime_UTR 25.0%
!!! TAATTGAAAGGTATCTATCT+TGG + chr2_3:24465793-24465812 Msa0285130:three_prime_UTR 25.0%
!!! AATTGAAAGGTATCTATCTT+GGG + chr2_3:24465794-24465813 Msa0285130:three_prime_UTR 25.0%
!! TACCTTAATTTGTTGTTGGA+GGG - chr2_3:24462601-24462620 None:intergenic 30.0%
!! TTACCTTAATTTGTTGTTGG+AGG - chr2_3:24462602-24462621 None:intergenic 30.0%
!! TGCTTACCTTAATTTGTTGT+TGG - chr2_3:24462605-24462624 None:intergenic 30.0%
AGAATGAAAATAAACCTTGG+GGG - chr2_3:24462899-24462918 None:intergenic 30.0%
!! TTAATTTGCTTAGAAGGAAG+TGG + chr2_3:24463068-24463087 Msa0285130:intron 30.0%
TCTTCTTGATTATGCATTTG+TGG + chr2_3:24463097-24463116 Msa0285130:intron 30.0%
TGAAATTTCAAGACCCAAAA+TGG - chr2_3:24463161-24463180 None:intergenic 30.0%
GCATAATTCAGTGTAATCAT+AGG - chr2_3:24463273-24463292 None:intergenic 30.0%
CGGATCATAATTTCAGAAAA+TGG - chr2_3:24463295-24463314 None:intergenic 30.0%
TTTCGCAAATTCAAGGTTAT+TGG + chr2_3:24463439-24463458 Msa0285130:intron 30.0%
! AAAGAGTAAACCACCATTTT+GGG - chr2_3:24463486-24463505 None:intergenic 30.0%
!! AGTTCTGAAAAGATAATGGT+GGG + chr2_3:24463535-24463554 Msa0285130:intron 30.0%
GATGAAGTAGCAATTTACTT+AGG + chr2_3:24463559-24463578 Msa0285130:intron 30.0%
GCTGTTTATTTATTAACCAG+AGG + chr2_3:24463685-24463704 Msa0285130:intron 30.0%
ATTGTTAAAAGACGGAACTT+TGG - chr2_3:24463943-24463962 None:intergenic 30.0%
AATTAAAGAACGATCATCGA+AGG - chr2_3:24464226-24464245 None:intergenic 30.0%
CACACATGGATAACAATTTA+TGG + chr2_3:24464620-24464639 Msa0285130:intron 30.0%
!!! TGAGATGTCTTACTTTTTAG+AGG + chr2_3:24464683-24464702 Msa0285130:intron 30.0%
AGTTGCACAAAATATGACAT+GGG - chr2_3:24464770-24464789 None:intergenic 30.0%
AAGTTGCACAAAATATGACA+TGG - chr2_3:24464771-24464790 None:intergenic 30.0%
! TGCAACTTTATTTCTCATAC+AGG + chr2_3:24464783-24464802 Msa0285130:intron 30.0%
! TTTATTTCTCATACAGGAGT+AGG + chr2_3:24464789-24464808 Msa0285130:intron 30.0%
ATATATGCTGCAGATTGAAA+AGG + chr2_3:24464885-24464904 Msa0285130:intron 30.0%
! ATGTTTTGCCAGAATATGTT+CGG + chr2_3:24465161-24465180 Msa0285130:intron 30.0%
GAACCATATTCATGAGAAAT+AGG - chr2_3:24465213-24465232 None:intergenic 30.0%
! ATCACTTGGTAATCAAAACA+AGG - chr2_3:24465497-24465516 None:intergenic 30.0%
TTTCTCAAATATTGCTCATC+TGG - chr2_3:24465638-24465657 None:intergenic 30.0%
CGATAAGATGCATTTGATAA+TGG + chr2_3:24465741-24465760 Msa0285130:three_prime_UTR 30.0%
AGATACCTTTCAATTATACC+TGG - chr2_3:24465789-24465808 None:intergenic 30.0%
ATAGATTGGGTGAGATAAAG+TGG - chr2_3:24462573-24462592 None:intergenic 35.0%
TTGGACAGTGAAACTGTAAA+TGG + chr2_3:24462708-24462727 Msa0285130:intron 35.0%
GAATGAAACTGAACACTTGA+TGG - chr2_3:24462799-24462818 None:intergenic 35.0%
TTTGACAATCAAAGCCTTGA+AGG - chr2_3:24462860-24462879 None:intergenic 35.0%
TTCACACCACCTCTATTATA+CGG + chr2_3:24463342-24463361 Msa0285130:intron 35.0%
GTTTCATCTCCGTATAATAG+AGG - chr2_3:24463354-24463373 None:intergenic 35.0%
! GGAGATGAAACTCTTATTTG+AGG + chr2_3:24463363-24463382 Msa0285130:intron 35.0%
! GATGAAACTCTTATTTGAGG+CGG + chr2_3:24463366-24463385 Msa0285130:intron 35.0%
TTCGGTATTTCGCAAATTCA+AGG + chr2_3:24463432-24463451 Msa0285130:intron 35.0%
TACAATCTCATGACCCAAAA+TGG + chr2_3:24463470-24463489 Msa0285130:intron 35.0%
! CAAAGAGTAAACCACCATTT+TGG - chr2_3:24463487-24463506 None:intergenic 35.0%
!! GAGTTCTGAAAAGATAATGG+TGG + chr2_3:24463534-24463553 Msa0285130:intron 35.0%
AATTGTTAACCCACTTGTGT+TGG + chr2_3:24463755-24463774 Msa0285130:intron 35.0%
CGCATAATTGTTCTATTTGG+AGG + chr2_3:24463904-24463923 Msa0285130:intron 35.0%
CCTTCACACTAATTTCAACT+TGG - chr2_3:24464174-24464193 None:intergenic 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG + chr2_3:24464171-24464190 Msa0285130:CDS 35.0%
GTTGTCTATTCAAAGTATGC+TGG + chr2_3:24464322-24464341 Msa0285130:CDS 35.0%
CTGAAAGATGATGACATTGT+TGG + chr2_3:24464382-24464401 Msa0285130:CDS 35.0%
CCTTGATATCATCAGTTTCA+AGG - chr2_3:24464411-24464430 None:intergenic 35.0%
CCTTGAAACTGATGATATCA+AGG + chr2_3:24464408-24464427 Msa0285130:CDS 35.0%
ATCAGAACTCTATCGTTCAA+GGG - chr2_3:24464442-24464461 None:intergenic 35.0%
TATCAGAACTCTATCGTTCA+AGG - chr2_3:24464443-24464462 None:intergenic 35.0%
! GAACGATAGAGTTCTGATAA+AGG + chr2_3:24464444-24464463 Msa0285130:CDS 35.0%
TATTCTTGTTGGATCCAAGT+TGG + chr2_3:24464492-24464511 Msa0285130:intron 35.0%
CGAAATTGAACCACTCAATA+TGG + chr2_3:24464556-24464575 Msa0285130:intron 35.0%
ACTCACTTATCCATATTGAG+TGG - chr2_3:24464569-24464588 None:intergenic 35.0%
TGCAAATTATCTGATGGTCA+AGG + chr2_3:24464729-24464748 Msa0285130:intron 35.0%
AGTAGGATTCAAAGACACTA+TGG + chr2_3:24464806-24464825 Msa0285130:intron 35.0%
AGACCTCAACAAAACATAAG+AGG - chr2_3:24464832-24464851 None:intergenic 35.0%
GCATATATTAAACCAGTCAG+TGG - chr2_3:24464873-24464892 None:intergenic 35.0%
AAGCTTACTGTTCCAAATGA+AGG - chr2_3:24464964-24464983 None:intergenic 35.0%
! TTTTAATCAACGTCACTCGT+AGG + chr2_3:24465131-24465150 Msa0285130:intron 35.0%
TTGTAATACTTGGATGTCAC+AGG + chr2_3:24465263-24465282 Msa0285130:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG + chr2_3:24465406-24465425 Msa0285130:CDS 35.0%
GATTACCAAGTGATTCCTAA+CGG + chr2_3:24465503-24465522 Msa0285130:three_prime_UTR 35.0%
ATTACCAAGTGATTCCTAAC+GGG + chr2_3:24465504-24465523 Msa0285130:three_prime_UTR 35.0%
TTGGAGGGAGTAGATAGATT+GGG - chr2_3:24462586-24462605 None:intergenic 40.0%
CTCCCTCCAACAACAAATTA+AGG + chr2_3:24462596-24462615 Msa0285130:five_prime_UTR 40.0%
CAGCATCATCAATTTCAACG+AGG + chr2_3:24462746-24462765 Msa0285130:CDS 40.0%
TTCATTCTGCTCGACATGTT+AGG + chr2_3:24462812-24462831 Msa0285130:CDS 40.0%
TCATCTCCGTATAATAGAGG+TGG - chr2_3:24463351-24463370 None:intergenic 40.0%
AATCTCATGACCCAAAATGG+TGG + chr2_3:24463473-24463492 Msa0285130:intron 40.0%
GTGATGTTTGTGTAGCAGTT+TGG - chr2_3:24463733-24463752 None:intergenic 40.0%
! GTCTCAGATTCGATTTTTCC+CGG + chr2_3:24463822-24463841 Msa0285130:intron 40.0%
!! ATTTTTCCCGGTGCCAATTT+CGG + chr2_3:24463834-24463853 Msa0285130:intron 40.0%
TACACTGCAATCAAGCCTTT+GGG + chr2_3:24464013-24464032 Msa0285130:CDS 40.0%
AAGTGTCTTTCCTTCTCCAA+CGG - chr2_3:24464143-24464162 None:intergenic 40.0%
TTGGAGAAGGAAAGACACTT+GGG + chr2_3:24464143-24464162 Msa0285130:CDS 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG + chr2_3:24464292-24464311 Msa0285130:intron 40.0%
TTCAAAGTATGCTGGTACTG+AGG + chr2_3:24464330-24464349 Msa0285130:CDS 40.0%
!! TGGCCTCTTATGTTTTGTTG+AGG + chr2_3:24464826-24464845 Msa0285130:intron 40.0%
TATGCTGCAGATTGAAAAGG+CGG + chr2_3:24464888-24464907 Msa0285130:intron 40.0%
AAGGCGGAAGAAAAAACTTC+AGG + chr2_3:24464904-24464923 Msa0285130:CDS 40.0%
! TCAAACAAAGAAGGTACAGC+AGG - chr2_3:24464988-24465007 None:intergenic 40.0%
TAAACGTGCCGAACATATTC+TGG - chr2_3:24465172-24465191 None:intergenic 40.0%
TAATACTTGGATGTCACAGG+TGG + chr2_3:24465266-24465285 Msa0285130:intron 40.0%
AAACCTTTGACTGTTACTCC+TGG + chr2_3:24465330-24465349 Msa0285130:CDS 40.0%
AACCTTTGACTGTTACTCCT+GGG + chr2_3:24465331-24465350 Msa0285130:CDS 40.0%
GAAGTCATTACCAGCGTATT+TGG - chr2_3:24465373-24465392 None:intergenic 40.0%
! ATACGCTGGTAATGACTTCA+AGG + chr2_3:24465374-24465393 Msa0285130:CDS 40.0%
! TACGCTGGTAATGACTTCAA+GGG + chr2_3:24465375-24465394 Msa0285130:CDS 40.0%
AATGACTTCAAGGGCAAAGA+TGG + chr2_3:24465384-24465403 Msa0285130:CDS 40.0%
CTCAAATATTGCTCATCTGG+TGG - chr2_3:24465635-24465654 None:intergenic 40.0%
CAGCTCCAGGTATAATTGAA+AGG + chr2_3:24465781-24465800 Msa0285130:three_prime_UTR 40.0%
!! TGAAAGGTATCTATCTTGGG+AGG + chr2_3:24465797-24465816 Msa0285130:three_prime_UTR 40.0%
GTTGGAGGGAGTAGATAGAT+TGG - chr2_3:24462587-24462606 None:intergenic 45.0%
TGATGGTCGAAGTCCTTCAA+AGG - chr2_3:24462782-24462801 None:intergenic 45.0%
TCTGCTCGACATGTTAGGAT+TGG + chr2_3:24462817-24462836 Msa0285130:CDS 45.0%
! TGTAATCATAGGCGTCGTGT+CGG - chr2_3:24463262-24463281 None:intergenic 45.0%
GTGAAGCACAGACACAAACA+CGG - chr2_3:24463327-24463346 None:intergenic 45.0%
! ACTCTTATTTGAGGCGGTGA+AGG + chr2_3:24463372-24463391 Msa0285130:intron 45.0%
! CTCTTATTTGAGGCGGTGAA+GGG + chr2_3:24463373-24463392 Msa0285130:intron 45.0%
! TCTTATTTGAGGCGGTGAAG+GGG + chr2_3:24463374-24463393 Msa0285130:intron 45.0%
! TTAACCCACTTGTGTTGGTC+TGG + chr2_3:24463760-24463779 Msa0285130:intron 45.0%
ATCACCAGACCAACACAAGT+GGG - chr2_3:24463767-24463786 None:intergenic 45.0%
! TTGTGTTGGTCTGGTGATGT+TGG + chr2_3:24463769-24463788 Msa0285130:intron 45.0%
! ATCGAATCTGAGACCTTGAG+AGG - chr2_3:24463816-24463835 None:intergenic 45.0%
CTCAACTAGTCCACCGAAAT+TGG - chr2_3:24463850-24463869 None:intergenic 45.0%
TTGATTGCAGTGTACTGCAC+GGG - chr2_3:24464007-24464026 None:intergenic 45.0%
CTTGATTGCAGTGTACTGCA+CGG - chr2_3:24464008-24464027 None:intergenic 45.0%
GTACACTGCAATCAAGCCTT+TGG + chr2_3:24464012-24464031 Msa0285130:intron 45.0%
AATCAAGCCTTTGGGTGACA+GGG + chr2_3:24464021-24464040 Msa0285130:CDS 45.0%
ATAAGTACCCTGTCACCCAA+AGG - chr2_3:24464031-24464050 None:intergenic 45.0%
CAGAAGAGAAGACACAGAGT+GGG + chr2_3:24464065-24464084 Msa0285130:CDS 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG - chr2_3:24464100-24464119 None:intergenic 45.0%
AGTGCTCAAACAAAGCCTCA+AGG + chr2_3:24464103-24464122 Msa0285130:CDS 45.0%
GTTGGAGAAGGAAAGACACT+TGG + chr2_3:24464142-24464161 Msa0285130:CDS 45.0%
GAATAGACAACTTGTGCACC+TGG - chr2_3:24464313-24464332 None:intergenic 45.0%
! AAAGTATGCTGGTACTGAGG+TGG + chr2_3:24464333-24464352 Msa0285130:CDS 45.0%
! CGGTTGATATTGCACACACA+TGG + chr2_3:24464606-24464625 Msa0285130:intron 45.0%
! GCTTTTAGATAGCCACTGAC+TGG + chr2_3:24464858-24464877 Msa0285130:intron 45.0%
GCGGAAGAAAAAACTTCAGG+CGG + chr2_3:24464907-24464926 Msa0285130:CDS 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG + chr2_3:24464924-24464943 Msa0285130:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG + chr2_3:24464933-24464952 Msa0285130:CDS 45.0%
ACCAAGGAGAAGCCTTCATT+TGG + chr2_3:24464949-24464968 Msa0285130:CDS 45.0%
TCCAAATGAAGGCTTCTCCT+TGG - chr2_3:24464953-24464972 None:intergenic 45.0%
TTCCCAGGAGTAACAGTCAA+AGG - chr2_3:24465336-24465355 None:intergenic 45.0%
GTTCTGTACTCCAAATACGC+TGG + chr2_3:24465360-24465379 Msa0285130:CDS 45.0%
CATGACATCTGAACTCCTCA+AGG - chr2_3:24465424-24465443 None:intergenic 45.0%
CTTGAGGAGTTCAGATGTCA+TGG + chr2_3:24465422-24465441 Msa0285130:CDS 45.0%
TGTCATGGCTGTACTCTCTT+AGG + chr2_3:24465437-24465456 Msa0285130:CDS 45.0%
AGTTCCCGTTAGGAATCACT+TGG - chr2_3:24465511-24465530 None:intergenic 45.0%
AAGTGATTCCTAACGGGAAC+TGG + chr2_3:24465510-24465529 Msa0285130:three_prime_UTR 45.0%
AGTGATTCCTAACGGGAACT+GGG + chr2_3:24465511-24465530 Msa0285130:three_prime_UTR 45.0%
TTGAAAACCCAGTTCCCGTT+AGG - chr2_3:24465521-24465540 None:intergenic 45.0%
!! GAACTGGGTTTTCAAGCATC+TGG + chr2_3:24465526-24465545 Msa0285130:three_prime_UTR 45.0%
!! TCAAATTAAATTAAATAAAA+TGG - chr2_3:24463022-24463041 None:intergenic 5.0%
!! AGGAGCGTTGCATCCTTTGA+AGG + chr2_3:24462766-24462785 Msa0285130:CDS 50.0%
! GGATTGGTAATCCTGCTCGT+AGG + chr2_3:24462833-24462852 Msa0285130:CDS 50.0%
CACAAACACGGACACAGACA+CGG - chr2_3:24463315-24463334 None:intergenic 50.0%
CATCACCAGACCAACACAAG+TGG - chr2_3:24463768-24463787 None:intergenic 50.0%
! TTGGTCTGGTGATGTTGGCT+TGG + chr2_3:24463774-24463793 Msa0285130:intron 50.0%
!! TGGTCTGGTGATGTTGGCTT+GGG + chr2_3:24463775-24463794 Msa0285130:intron 50.0%
TAGTCCACCGAAATTGGCAC+CGG - chr2_3:24463844-24463863 None:intergenic 50.0%
CAATCAAGCCTTTGGGTGAC+AGG + chr2_3:24464020-24464039 Msa0285130:CDS 50.0%
GCAGAAGAGAAGACACAGAG+TGG + chr2_3:24464064-24464083 Msa0285130:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+AGG + chr2_3:24464106-24464125 Msa0285130:CDS 50.0%
AACAAAGCCTCAAGGAGGTG+AGG + chr2_3:24464111-24464130 Msa0285130:CDS 50.0%
! GGTACTGAGGTGGACTTCAA+TGG + chr2_3:24464343-24464362 Msa0285130:CDS 50.0%
! GTTGGATCCAAGTTGGCGAA+TGG + chr2_3:24464499-24464518 Msa0285130:intron 50.0%
ATGTCACAGGTGGTAGCAGT+TGG + chr2_3:24465276-24465295 Msa0285130:intron 50.0%
GAGTACAGAACTGTGTTCCC+AGG - chr2_3:24465351-24465370 None:intergenic 50.0%
!! TCATGTGGTTTTGCAGCTCC+AGG + chr2_3:24465768-24465787 Msa0285130:three_prime_UTR 50.0%
TCCTGCTCGTAGGTCCTTCA+AGG + chr2_3:24462843-24462862 Msa0285130:CDS 55.0%
AACCTTGGGGGCAACAACAG+TGG - chr2_3:24462887-24462906 None:intergenic 55.0%
!! GTGATGTTGGCTTGGGACCT+TGG + chr2_3:24463782-24463801 Msa0285130:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr2_3:24463802-24463821 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr2_3:24463800-24463819 Msa0285130:intron 55.0%
! TTTCCCGGTGCCAATTTCGG+TGG + chr2_3:24463837-24463856 Msa0285130:intron 55.0%
AGTCCACCGAAATTGGCACC+GGG - chr2_3:24463843-24463862 None:intergenic 55.0%
AAAGCCTCAAGGAGGTGAGG+TGG + chr2_3:24464114-24464133 Msa0285130:CDS 55.0%
! GGATCCAAGTTGGCGAATGG+CGG + chr2_3:24464502-24464521 Msa0285130:intron 55.0%
AGGTGGTAGCAGTTGGTCCT+GGG + chr2_3:24465283-24465302 Msa0285130:intron 55.0%
GCCTTGAAGGACCTACGAGC+AGG - chr2_3:24462847-24462866 None:intergenic 60.0%
CTTGGGGGCAACAACAGTGG+CGG - chr2_3:24462884-24462903 None:intergenic 60.0%
GCAACCACCTCACCTCCTTG+AGG - chr2_3:24464121-24464140 None:intergenic 60.0%
GAGGTGGTTGCCGTTGGAGA+AGG + chr2_3:24464130-24464149 Msa0285130:CDS 60.0%
! TCCAAGTTGGCGAATGGCGG+TGG + chr2_3:24464505-24464524 Msa0285130:intron 60.0%
ACCACCGCCATTCGCCAACT+TGG - chr2_3:24464509-24464528 None:intergenic 60.0%
CAGGTGGTAGCAGTTGGTCC+TGG + chr2_3:24465282-24465301 Msa0285130:intron 60.0%
AGCAGTTGGTCCTGGGCTTG+TGG + chr2_3:24465290-24465309 Msa0285130:CDS 60.0%
TGGTCCTGGGCTTGTGGATG+AGG + chr2_3:24465296-24465315 Msa0285130:CDS 60.0%
CCTTCCTCATCCACAAGCCC+AGG - chr2_3:24465303-24465322 None:intergenic 60.0%
CCTGGGCTTGTGGATGAGGA+AGG + chr2_3:24465300-24465319 Msa0285130:CDS 60.0%
CGCCACTGTTGTTGCCCCCA+AGG + chr2_3:24462882-24462901 Msa0285130:CDS 65.0%
! AGGCGTCGTGTCGGTGCTTC+AGG - chr2_3:24463253-24463272 None:intergenic 65.0%
GGAGGTGAGGTGGTTGCCGT+TGG + chr2_3:24464124-24464143 Msa0285130:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 24462398 24465865 24462398 ID=Msa0285130;Name=Msa0285130
chr2_3 mRNA 24462398 24465865 24462398 ID=Msa0285130-mRNA-1;Parent=Msa0285130;Name=Msa0285130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231|1|1|1|0.66|0.42|7|378|254
chr2_3 exon 24462398 24462617 24462398 ID=Msa0285130-mRNA-1:exon:9204;Parent=Msa0285130-mRNA-1
chr2_3 exon 24462716 24462903 24462716 ID=Msa0285130-mRNA-1:exon:9205;Parent=Msa0285130-mRNA-1
chr2_3 exon 24464013 24464192 24464013 ID=Msa0285130-mRNA-1:exon:9206;Parent=Msa0285130-mRNA-1
chr2_3 exon 24464310 24464465 24464310 ID=Msa0285130-mRNA-1:exon:9207;Parent=Msa0285130-mRNA-1
chr2_3 exon 24464898 24464975 24464898 ID=Msa0285130-mRNA-1:exon:9208;Parent=Msa0285130-mRNA-1
chr2_3 exon 24465285 24465710 24465285 ID=Msa0285130-mRNA-1:exon:9209;Parent=Msa0285130-mRNA-1
chr2_3 exon 24465740 24465865 24465740 ID=Msa0285130-mRNA-1:exon:9210;Parent=Msa0285130-mRNA-1
chr2_3 five_prime_UTR 24462398 24462617 24462398 ID=Msa0285130-mRNA-1:five_prime_utr;Parent=Msa0285130-mRNA-1
chr2_3 five_prime_UTR 24462716 24462726 24462716 ID=Msa0285130-mRNA-1:five_prime_utr;Parent=Msa0285130-mRNA-1
chr2_3 CDS 24462727 24462903 24462727 ID=Msa0285130-mRNA-1:cds;Parent=Msa0285130-mRNA-1
chr2_3 CDS 24464013 24464192 24464013 ID=Msa0285130-mRNA-1:cds;Parent=Msa0285130-mRNA-1
chr2_3 CDS 24464310 24464465 24464310 ID=Msa0285130-mRNA-1:cds;Parent=Msa0285130-mRNA-1
chr2_3 CDS 24464898 24464975 24464898 ID=Msa0285130-mRNA-1:cds;Parent=Msa0285130-mRNA-1
chr2_3 CDS 24465285 24465458 24465285 ID=Msa0285130-mRNA-1:cds;Parent=Msa0285130-mRNA-1
chr2_3 three_prime_UTR 24465459 24465710 24465459 ID=Msa0285130-mRNA-1:three_prime_utr;Parent=Msa0285130-mRNA-1
chr2_3 three_prime_UTR 24465740 24465865 24465740 ID=Msa0285130-mRNA-1:three_prime_utr;Parent=Msa0285130-mRNA-1
Gene Sequence

>Msa0285130

ATGGCTTCTTCACAGTTAACAGCATCATCAATTTCAACGAGGAGCGTTGCATCCTTTGAAGGACTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGTACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATTAAGGAAGCAGAAGAGAAGACACAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCCGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTCAATGGTGAAAAGCATCTTCTTCTGAAAGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAACGATAGAGTTCTGATAAAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAGCCTTCATTTGGAACAGTGGTAGCAGTTGGTCCTGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTACTCCTGGGAACACAGTTCTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>Msa0285130

MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLLLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS*