AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0903590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903590 MtrunA17_Chr6g0451991 92.013 313 24 1 1 312 1 313 0.0 578
Msa0903590 MtrunA17_Chr4g0059601 37.987 308 145 10 13 284 21 318 2.67e-47 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903590 AT5G62910.1 36.364 319 132 8 5 284 11 297 1.89e-41 147
Msa0903590 AT5G62910.2 36.364 319 132 8 5 284 11 297 1.89e-41 147
Msa0903590 AT3G48070.1 40.138 289 134 10 14 284 22 289 2.26e-39 141
Msa0903590 AT3G48070.2 40.138 289 134 10 14 284 22 289 1.44e-38 139
Msa0903590 AT3G48070.3 43.382 136 59 2 149 284 123 240 7.84e-31 118
Msa0903590 AT1G74870.1 29.181 281 163 7 13 292 20 265 2.45e-22 95.1

Find 72 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGGAGTTGTTTATTA+TGG 0.175343 6_2:+800054 None:intergenic
AGGGTTTACCCTCTTCTTCT+TGG 0.319817 6_2:+801730 None:intergenic
CTCTTTCTTCGTTAAGTCCT+TGG 0.332998 6_2:+799817 None:intergenic
TTCCTTCATTCAATGGCTCC+TGG 0.362277 6_2:-801779 None:intergenic
CTCCTGATTTCCTTGTATGA+TGG 0.367192 6_2:+800124 None:intergenic
TGCATCCAAGCGAATGATTC+CGG 0.369607 6_2:-800079 Msa0903590:CDS
CGAGGCTGATGGACGATGTC+CGG 0.381759 6_2:-799513 Msa0903590:CDS
TAATCAATCGTATGCTCTAT+AGG 0.396032 6_2:+799857 None:intergenic
AACCATCATACAAGGAAATC+AGG 0.402516 6_2:-800126 Msa0903590:CDS
GGATGCGATGTTGACTCAAC+TGG 0.420478 6_2:-800199 Msa0903590:CDS
GGAGTTGTTTATTATGGATC+CGG 0.422445 6_2:+800060 None:intergenic
CTCTTCTTCTTGGAGGAGAA+AGG 0.450083 6_2:+801740 None:intergenic
AAGATGGATGCCTTGATGAT+TGG 0.450875 6_2:-799940 Msa0903590:CDS
GTGATTATAACTACTTTGAA+TGG 0.452304 6_2:+800039 None:intergenic
AGATGGATGCCTTGATGATT+GGG 0.456418 6_2:-799939 Msa0903590:CDS
CAGTCATGCCGTATGAGTAC+AGG 0.456682 6_2:-799416 Msa0903590:CDS
GGAGATCTCAATGAGGAAGA+TGG 0.470422 6_2:-799956 Msa0903590:CDS
GGAGAAAGGAGGGTCAGAAA+TGG 0.470846 6_2:+801754 None:intergenic
GTTTACCCTCTTCTTCTTGG+AGG 0.476527 6_2:+801733 None:intergenic
ACACGAACAAGGAAGAAATT+CGG 0.481896 6_2:+799574 None:intergenic
TCTAAATCCTCGTAACAGAT+AGG 0.489191 6_2:+799608 None:intergenic
AATCATGTAGATGAAAATGT+TGG 0.490500 6_2:-799473 Msa0903590:CDS
CTCGCAATGTGCTTAGAAGA+TGG 0.498559 6_2:+800160 None:intergenic
ACTTAACGAAGAAAGAGTTC+AGG 0.499489 6_2:-799811 Msa0903590:CDS
CCGTATGAGTACAGGGTGCT+AGG 0.509540 6_2:-799408 Msa0903590:exon
GAATTTCTTCCTTGTTCGTG+TGG 0.516729 6_2:-799572 Msa0903590:CDS
TGGATCCGGAATCATTCGCT+TGG 0.519416 6_2:+800074 None:intergenic
ACTCTCAGTTAAATTCAAAC+CGG 0.523325 6_2:-799694 Msa0903590:CDS
CACATATTAGCTGTCGAGCA+TGG 0.524731 6_2:-799772 Msa0903590:CDS
ACTGTTTGCGTTTAAAGCAT+CGG 0.537816 6_2:+799907 None:intergenic
TATAGGAGACTCTGAAACCA+TGG 0.540448 6_2:+799874 None:intergenic
GAGGCTGATGGACGATGTCC+GGG 0.541915 6_2:-799512 Msa0903590:CDS
AGGAGAAAAGAAAGAGAGGA+TGG 0.542995 6_2:-800106 Msa0903590:CDS
CCTTGGACGAAGAGTGTCAT+CGG 0.543532 6_2:+799745 None:intergenic
TTATGCGGCTTTGAGAGGTC+GGG 0.543577 6_2:+799716 None:intergenic
TGCGTTTAAAGCATCGGCAA+CGG 0.544753 6_2:+799913 None:intergenic
AATCAGGAGAAAAGAAAGAG+AGG 0.545531 6_2:-800110 Msa0903590:CDS
GTTATGCGGCTTTGAGAGGT+CGG 0.547395 6_2:+799715 None:intergenic
CGTTGATTCAGAAGCAGCCA+AGG 0.549296 6_2:-799834 Msa0903590:CDS
GAGAGGTCGGGCAAACACCT+TGG 0.554629 6_2:+799728 None:intergenic
ACAAAATTGTACCTTGGTCA+TGG 0.559149 6_2:-799661 Msa0903590:CDS
CTTGGACGAAGAGTGTCATC+GGG 0.563390 6_2:+799746 None:intergenic
TTCTAAGCACATTGCGAGCG+AGG 0.567304 6_2:-800155 Msa0903590:CDS
TTCTTCTTGGAGGAGAAAGG+AGG 0.571919 6_2:+801743 None:intergenic
GGAGGGTCAGAAATGGAACC+AGG 0.572536 6_2:+801761 None:intergenic
CTTTCTCCTCCAAGAAGAAG+AGG 0.573316 6_2:-801739 Msa0903590:CDS
CAACGGCCTCCCAATCATCA+AGG 0.573927 6_2:+799930 None:intergenic
GAGAGTTATGCGGCTTTGAG+AGG 0.580285 6_2:+799711 None:intergenic
CCTAGCACCCTGTACTCATA+CGG 0.584262 6_2:+799408 None:intergenic
AAACAGTAACGAGCATTCCA+TGG 0.585443 6_2:-799891 Msa0903590:CDS
GTTATAATCACGATGAGTCA+AGG 0.589115 6_2:-800027 Msa0903590:CDS
AGATGAAATCCACACGAACA+AGG 0.589677 6_2:+799563 None:intergenic
AATCACGATGAGTCAAGGAA+TGG 0.591635 6_2:-800022 Msa0903590:CDS
TTGATGTTAGGCGCGAACAA+TGG 0.600363 6_2:-801253 Msa0903590:CDS
GGAGAATCAACCATCATACA+AGG 0.605659 6_2:-800134 Msa0903590:CDS
AAGAAGAGCAACATAATGGG+AGG 0.606227 6_2:+799291 None:intergenic
AGCAAATCAAGCTTGATGTT+AGG 0.609219 6_2:-801265 Msa0903590:CDS
GCGATGTTGACTCAACTGGA+AGG 0.610065 6_2:-800195 Msa0903590:CDS
TCTTCTTGGAGGAGAAAGGA+GGG 0.611617 6_2:+801744 None:intergenic
CGCGAACAATGGCTTTCTAG+AGG 0.612582 6_2:-801242 Msa0903590:intron
AGTCATGCCGTATGAGTACA+GGG 0.616497 6_2:-799415 Msa0903590:CDS
GTAACCACAAAATTGTACCT+TGG 0.617000 6_2:-799667 Msa0903590:CDS
TTTCTCCTCCAAGAAGAAGA+GGG 0.628934 6_2:-801738 Msa0903590:intron
GAATTTAACTGAGAGTTATG+CGG 0.630591 6_2:+799701 None:intergenic
TTCCTCATTGAGATCTCCTG+AGG 0.639616 6_2:+799961 None:intergenic
AGAAGAGCAACATAATGGGA+GGG 0.640118 6_2:+799292 None:intergenic
ATTATTGTTCTCCATGACCA+AGG 0.651182 6_2:+799650 None:intergenic
TAACAGATAGGACATTGACT+AGG 0.694474 6_2:+799620 None:intergenic
CGATGTTGACTCAACTGGAA+GGG 0.705315 6_2:-800194 Msa0903590:CDS
TGGATGCCTTGATGATTGGG+AGG 0.706476 6_2:-799936 Msa0903590:CDS
TCAATGTCCTATCTGTTACG+AGG 0.710111 6_2:-799615 Msa0903590:CDS
TTCCTCAGGAGATCTCAATG+AGG 0.718693 6_2:-799963 Msa0903590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTAAAATAAAA+TGG + chr6_2:800770-800789 None:intergenic 0.0%
!! TTTAAAAAAAAATTCAATGA+TGG - chr6_2:800776-800795 Msa0903590:intron 10.0%
!! ATAAAAAATAAAAAGGAGAA+GGG + chr6_2:799363-799382 None:intergenic 15.0%
!! AATAAAAAATAAAAAGGAGA+AGG + chr6_2:799364-799383 None:intergenic 15.0%
!!! TCATTCTGTTATTTATATAA+GGG - chr6_2:799971-799990 Msa0903590:CDS 15.0%
!! TTAAAAAATATAATAGCGAA+TGG + chr6_2:800077-800096 None:intergenic 15.0%
!!! TTAAAGATATTGTTTTTCAA+TGG - chr6_2:800722-800741 Msa0903590:intron 15.0%
!!! ATCAAATTTTTATAGCTCAA+GGG + chr6_2:799418-799437 None:intergenic 20.0%
!!! AATCAAATTTTTATAGCTCA+AGG + chr6_2:799419-799438 None:intergenic 20.0%
!!! AATCTTCATTTTTTATGTCA+TGG - chr6_2:799586-799605 Msa0903590:CDS 20.0%
!! AACATTATGAATGTCATAAA+AGG + chr6_2:799661-799680 None:intergenic 20.0%
!!! ATTCATAATGTTTTTCTCTA+AGG - chr6_2:799669-799688 Msa0903590:CDS 20.0%
!!! TTATGATCATCATTTTCATA+TGG - chr6_2:799857-799876 Msa0903590:CDS 20.0%
!! CAAAGAAAAACATAATCAAT+AGG + chr6_2:799894-799913 None:intergenic 20.0%
!! GAGAAAAAAAAACTTATCAT+TGG + chr6_2:799926-799945 None:intergenic 20.0%
!!! GTCATTCTGTTATTTATATA+AGG - chr6_2:799970-799989 Msa0903590:CDS 20.0%
!! TTATTTATATAAGGGTTTAG+AGG - chr6_2:799979-799998 Msa0903590:CDS 20.0%
!! CATTATATACCAAAATGATT+AGG - chr6_2:800120-800139 Msa0903590:CDS 20.0%
!! TATGAAAATAACTTATAGCT+TGG - chr6_2:800483-800502 Msa0903590:intron 20.0%
!!! TTTTGTTTTTCAGTCAAAAA+GGG - chr6_2:800851-800870 Msa0903590:intron 20.0%
! AATGCAATGAAATGGAAAAT+GGG + chr6_2:799501-799520 None:intergenic 25.0%
! AAATGCAATGAAATGGAAAA+TGG + chr6_2:799502-799521 None:intergenic 25.0%
! CAAAACAAAATGCAATGAAA+TGG + chr6_2:799509-799528 None:intergenic 25.0%
!!! TTTTGTTTTGTTGAGTTCAA+AGG - chr6_2:799519-799538 Msa0903590:CDS 25.0%
!!! TTTGTTTTGTTGAGTTCAAA+GGG - chr6_2:799520-799539 Msa0903590:CDS 25.0%
!!! ATGTCATGGTTTTATCATAA+AGG - chr6_2:799600-799619 Msa0903590:CDS 25.0%
!!! TTGCTTTGTTTTTGATGTTT+TGG - chr6_2:799708-799727 Msa0903590:CDS 25.0%
!! TGGAAATTTTCATTATGTCA+TGG - chr6_2:799728-799747 Msa0903590:CDS 25.0%
!! TTTTCATTATGTCATGGTTT+TGG - chr6_2:799734-799753 Msa0903590:CDS 25.0%
!! ATTGTGAATTTTCAGACTAA+TGG - chr6_2:799769-799788 Msa0903590:CDS 25.0%
!!! TCATTTTGGTATATAATGCA+AGG + chr6_2:800118-800137 None:intergenic 25.0%
!! AATTAAAGGCCTAATCATTT+TGG + chr6_2:800132-800151 None:intergenic 25.0%
!!! CACATGTTGATTTCAATTAA+AGG + chr6_2:800146-800165 None:intergenic 25.0%
!!! ATCATTGATTCCGAATTTTT+AGG - chr6_2:800299-800318 Msa0903590:intron 25.0%
!!! ATTCCGAATTTTTAGGTTTT+AGG - chr6_2:800306-800325 Msa0903590:intron 25.0%
!! TGCATAAACATTTGTCTTTT+AGG - chr6_2:800363-800382 Msa0903590:intron 25.0%
!! GCATAAACATTTGTCTTTTA+GGG - chr6_2:800364-800383 Msa0903590:intron 25.0%
!! ATTGACTTAAAGAGAGTTTA+TGG - chr6_2:800396-800415 Msa0903590:intron 25.0%
! TTATACTGTTTATCCAAACA+AGG - chr6_2:800598-800617 Msa0903590:intron 25.0%
!!! CTTTTGTTTTTCAGTCAAAA+AGG - chr6_2:800850-800869 Msa0903590:intron 25.0%
! TTGAATGGAGTTGTTTATTA+TGG + chr6_2:801020-801039 None:intergenic 25.0%
! GTGATTATAACTACTTTGAA+TGG + chr6_2:801035-801054 None:intergenic 25.0%
! AATCATGTAGATGAAAATGT+TGG - chr6_2:801598-801617 Msa0903590:intron 25.0%
GGAAATGCAATGCAATATAA+TGG + chr6_2:799640-799659 None:intergenic 30.0%
!!! TCATGGTTTTGGTTATCTTA+TGG - chr6_2:799745-799764 Msa0903590:CDS 30.0%
TATAATAGCGAATGGATCAA+AGG + chr6_2:800069-800088 None:intergenic 30.0%
AAAATAAGTCGATCCAAACA+GGG + chr6_2:800332-800351 None:intergenic 30.0%
TAAAATAAGTCGATCCAAAC+AGG + chr6_2:800333-800352 None:intergenic 30.0%
ATTTGACTGTTATTGCAGTA+AGG + chr6_2:800624-800643 None:intergenic 30.0%
TAATCAATCGTATGCTCTAT+AGG + chr6_2:801217-801236 None:intergenic 30.0%
GAATTTAACTGAGAGTTATG+CGG + chr6_2:801373-801392 None:intergenic 30.0%
ACTCTCAGTTAAATTCAAAC+CGG - chr6_2:801377-801396 Msa0903590:intron 30.0%
! CGATCTTTTTGTGACAAAAA+AGG + chr6_2:801537-801556 None:intergenic 30.0%
! TTATATAGTTTTCTGCATCC+CGG + chr6_2:801580-801599 None:intergenic 30.0%
! GAATTTTCAGACTAATGGCT+CGG - chr6_2:799774-799793 Msa0903590:CDS 35.0%
AGCAAATCAAGCTTGATGTT+AGG - chr6_2:799806-799825 Msa0903590:CDS 35.0%
! AAGCTTAGCTTAGTTAGTCT+TGG - chr6_2:800223-800242 Msa0903590:intron 35.0%
GGGCCTAAAACCTAAAAATT+CGG + chr6_2:800312-800331 None:intergenic 35.0%
CTCTTTAAGTCAATCCAAAC+AGG + chr6_2:800390-800409 None:intergenic 35.0%
!! GTTATTTTCATAAGCTGTCC+TGG + chr6_2:800475-800494 None:intergenic 35.0%
! TCAATGATGGTTTTCGAAGT+TGG - chr6_2:800789-800808 Msa0903590:intron 35.0%
AACCATCATACAAGGAAATC+AGG - chr6_2:800945-800964 Msa0903590:intron 35.0%
AATCAGGAGAAAAGAAAGAG+AGG - chr6_2:800961-800980 Msa0903590:intron 35.0%
GGAGTTGTTTATTATGGATC+CGG + chr6_2:801014-801033 None:intergenic 35.0%
GTTATAATCACGATGAGTCA+AGG - chr6_2:801044-801063 Msa0903590:intron 35.0%
!!! GAGTCAAGGAATGGTTTTAA+CGG - chr6_2:801058-801077 Msa0903590:intron 35.0%
! ACTGTTTGCGTTTAAAGCAT+CGG + chr6_2:801167-801186 None:intergenic 35.0%
ACTTAACGAAGAAAGAGTTC+AGG - chr6_2:801260-801279 Msa0903590:CDS 35.0%
GTAACCACAAAATTGTACCT+TGG - chr6_2:801404-801423 Msa0903590:intron 35.0%
! ATGACCAAGGTACAATTTTG+TGG + chr6_2:801411-801430 None:intergenic 35.0%
ACAAAATTGTACCTTGGTCA+TGG - chr6_2:801410-801429 Msa0903590:intron 35.0%
ATTATTGTTCTCCATGACCA+AGG + chr6_2:801424-801443 None:intergenic 35.0%
! TAACAGATAGGACATTGACT+AGG + chr6_2:801454-801473 None:intergenic 35.0%
TCTAAATCCTCGTAACAGAT+AGG + chr6_2:801466-801485 None:intergenic 35.0%
ACACGAACAAGGAAGAAATT+CGG + chr6_2:801500-801519 None:intergenic 35.0%
TTTCTCCTCCAAGAAGAAGA+GGG - chr6_2:799333-799352 Msa0903590:three_prime_UTR 40.0%
!! TTAGCTTAGTTAGTCTTGGC+AGG - chr6_2:800227-800246 Msa0903590:intron 40.0%
!! TAGCTTAGTTAGTCTTGGCA+GGG - chr6_2:800228-800247 Msa0903590:intron 40.0%
!!! TTTAGGTTTTAGGCCCTGTT+TGG - chr6_2:800316-800335 Msa0903590:intron 40.0%
!!! TTTGTCTTTTAGGGCCTGTT+TGG - chr6_2:800373-800392 Msa0903590:intron 40.0%
CTTACTTCCAAAAGATCTCC+AGG - chr6_2:800454-800473 Msa0903590:intron 40.0%
!! TATTGCAGTAAGGCCTTGTT+TGG + chr6_2:800614-800633 None:intergenic 40.0%
! CAAATCTTTTCCTCGCTAGA+CGG - chr6_2:800639-800658 Msa0903590:intron 40.0%
! AAATCTTTTCCTCGCTAGAC+GGG - chr6_2:800640-800659 Msa0903590:intron 40.0%
TAGAAGCTGTTTGATCAGCA+TGG + chr6_2:800671-800690 None:intergenic 40.0%
GGAGAATCAACCATCATACA+AGG - chr6_2:800937-800956 Msa0903590:intron 40.0%
CTCCTGATTTCCTTGTATGA+TGG + chr6_2:800950-800969 None:intergenic 40.0%
AGGAGAAAAGAAAGAGAGGA+TGG - chr6_2:800965-800984 Msa0903590:intron 40.0%
AATCACGATGAGTCAAGGAA+TGG - chr6_2:801049-801068 Msa0903590:intron 40.0%
! AAGATGGATGCCTTGATGAT+TGG - chr6_2:801131-801150 Msa0903590:intron 40.0%
! AGATGGATGCCTTGATGATT+GGG - chr6_2:801132-801151 Msa0903590:intron 40.0%
AAACAGTAACGAGCATTCCA+TGG - chr6_2:801180-801199 Msa0903590:intron 40.0%
!! TATAGGAGACTCTGAAACCA+TGG + chr6_2:801200-801219 None:intergenic 40.0%
CTCTTTCTTCGTTAAGTCCT+TGG + chr6_2:801257-801276 None:intergenic 40.0%
! CAATTTTGTGGTTACTGTGC+CGG + chr6_2:801399-801418 None:intergenic 40.0%
TCAATGTCCTATCTGTTACG+AGG - chr6_2:801456-801475 Msa0903590:intron 40.0%
GAATTTCTTCCTTGTTCGTG+TGG - chr6_2:801499-801518 Msa0903590:intron 40.0%
AGATGAAATCCACACGAACA+AGG + chr6_2:801511-801530 None:intergenic 40.0%
TTGTCACAAAAAGATCGTCG+AGG - chr6_2:801540-801559 Msa0903590:intron 40.0%
TCTTCTTGGAGGAGAAAGGA+GGG + chr6_2:799330-799349 None:intergenic 45.0%
TTCTTCTTGGAGGAGAAAGG+AGG + chr6_2:799331-799350 None:intergenic 45.0%
CTCTTCTTCTTGGAGGAGAA+AGG + chr6_2:799334-799353 None:intergenic 45.0%
CTTTCTCCTCCAAGAAGAAG+AGG - chr6_2:799332-799351 Msa0903590:three_prime_UTR 45.0%
GTTTACCCTCTTCTTCTTGG+AGG + chr6_2:799341-799360 None:intergenic 45.0%
AGGGTTTACCCTCTTCTTCT+TGG + chr6_2:799344-799363 None:intergenic 45.0%
TTGATGTTAGGCGCGAACAA+TGG - chr6_2:799818-799837 Msa0903590:CDS 45.0%
! AAGCTGTCCTGGAGATCTTT+TGG + chr6_2:800464-800483 None:intergenic 45.0%
!! CGATGTTGACTCAACTGGAA+GGG - chr6_2:800877-800896 Msa0903590:intron 45.0%
CTCGCAATGTGCTTAGAAGA+TGG + chr6_2:800914-800933 None:intergenic 45.0%
TGCATCCAAGCGAATGATTC+CGG - chr6_2:800992-801011 Msa0903590:intron 45.0%
! AGTACGAGTACGTTTTCCTC+AGG - chr6_2:801094-801113 Msa0903590:intron 45.0%
TTCCTCAGGAGATCTCAATG+AGG - chr6_2:801108-801127 Msa0903590:intron 45.0%
TTCCTCATTGAGATCTCCTG+AGG + chr6_2:801113-801132 None:intergenic 45.0%
GGAGATCTCAATGAGGAAGA+TGG - chr6_2:801115-801134 Msa0903590:intron 45.0%
!! TGCGTTTAAAGCATCGGCAA+CGG + chr6_2:801161-801180 None:intergenic 45.0%
CACATATTAGCTGTCGAGCA+TGG - chr6_2:801299-801318 Msa0903590:intron 45.0%
AAAAAGATCGTCGAGGCTGA+TGG - chr6_2:801547-801566 Msa0903590:intron 45.0%
AGTCATGCCGTATGAGTACA+GGG - chr6_2:801656-801675 Msa0903590:intron 45.0%
!! AAAATGAATAAAAAATAAAA+AGG + chr6_2:799370-799389 None:intergenic 5.0%
GGAGAAAGGAGGGTCAGAAA+TGG + chr6_2:799320-799339 None:intergenic 50.0%
CGCGAACAATGGCTTTCTAG+AGG - chr6_2:799829-799848 Msa0903590:CDS 50.0%
!! AGTTAGTCTTGGCAGGGACA+TGG - chr6_2:800234-800253 Msa0903590:intron 50.0%
!! GGATGCGATGTTGACTCAAC+TGG - chr6_2:800872-800891 Msa0903590:intron 50.0%
!! GCGATGTTGACTCAACTGGA+AGG - chr6_2:800876-800895 Msa0903590:intron 50.0%
TTCTAAGCACATTGCGAGCG+AGG - chr6_2:800916-800935 Msa0903590:intron 50.0%
TGGATCCGGAATCATTCGCT+TGG + chr6_2:801000-801019 None:intergenic 50.0%
! TGGATGCCTTGATGATTGGG+AGG - chr6_2:801135-801154 Msa0903590:intron 50.0%
!! CGTTGATTCAGAAGCAGCCA+AGG - chr6_2:801237-801256 Msa0903590:intron 50.0%
!! CTTGGACGAAGAGTGTCATC+GGG + chr6_2:801328-801347 None:intergenic 50.0%
!! CCTTGGACGAAGAGTGTCAT+CGG + chr6_2:801329-801348 None:intergenic 50.0%
!! TTATGCGGCTTTGAGAGGTC+GGG + chr6_2:801358-801377 None:intergenic 50.0%
!! GTTATGCGGCTTTGAGAGGT+CGG + chr6_2:801359-801378 None:intergenic 50.0%
!! GAGAGTTATGCGGCTTTGAG+AGG + chr6_2:801363-801382 None:intergenic 50.0%
CAGTCATGCCGTATGAGTAC+AGG - chr6_2:801655-801674 Msa0903590:intron 50.0%
CCTAGCACCCTGTACTCATA+CGG + chr6_2:801666-801685 None:intergenic 50.0%
GGAGGGTCAGAAATGGAACC+AGG + chr6_2:799313-799332 None:intergenic 55.0%
ATGGCTAATCCCGTCTAGCG+AGG + chr6_2:800652-800671 None:intergenic 55.0%
CAACGGCCTCCCAATCATCA+AGG + chr6_2:801144-801163 None:intergenic 55.0%
CCGATGACACTCTTCGTCCA+AGG - chr6_2:801326-801345 Msa0903590:intron 55.0%
! CCGTATGAGTACAGGGTGCT+AGG - chr6_2:801663-801682 Msa0903590:intron 55.0%
GAGAGGTCGGGCAAACACCT+TGG + chr6_2:801346-801365 None:intergenic 60.0%
! CGAGGCTGATGGACGATGTC+CGG - chr6_2:801558-801577 Msa0903590:intron 60.0%
! GAGGCTGATGGACGATGTCC+GGG - chr6_2:801559-801578 Msa0903590:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 799304 801789 799304 ID=Msa0903590;Name=Msa0903590
chr6_2 mRNA 799304 801789 799304 ID=Msa0903590-mRNA-1;Parent=Msa0903590;Name=Msa0903590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|105|312
chr6_2 exon 799304 800229 799304 ID=Msa0903590-mRNA-1:exon:362;Parent=Msa0903590-mRNA-1
chr6_2 exon 801243 801309 801243 ID=Msa0903590-mRNA-1:exon:361;Parent=Msa0903590-mRNA-1
chr6_2 exon 801739 801789 801739 ID=Msa0903590-mRNA-1:exon:360;Parent=Msa0903590-mRNA-1
chr6_2 CDS 801739 801789 801739 ID=Msa0903590-mRNA-1:cds;Parent=Msa0903590-mRNA-1
chr6_2 CDS 801243 801309 801243 ID=Msa0903590-mRNA-1:cds;Parent=Msa0903590-mRNA-1
chr6_2 CDS 799409 800229 799409 ID=Msa0903590-mRNA-1:cds;Parent=Msa0903590-mRNA-1
chr6_2 three_prime_UTR 799304 799408 799304 ID=Msa0903590-mRNA-1:three_prime_utr;Parent=Msa0903590-mRNA-1
Gene Sequence

>Msa0903590

ATGGCTCCTGGTTCCATTTCTGACCCTCCTTTCTCCTCCAAGAAGAAGAGGACTAATGGCTCGGTGAGACTGAAGCAAATCAAGCTTGATGTTAGGCGCGAACAATGGCTTTCTAGAGTCAAAAAGGGATGCGATGTTGACTCAACTGGAAGGGTTGATAGTGATCCATCTTCTAAGCACATTGCGAGCGAGGAGAATCAACCATCATACAAGGAAATCAGGAGAAAAGAAAGAGAGGATGGTACATGCATCCAAGCGAATGATTCCGGATCCATAATAAACAACTCCATTCAAAGTAGTTATAATCACGATGAGTCAAGGAATGGTTTTAACGGAAGTAGAAGCAGCAGTACGAGTACGTTTTCCTCAGGAGATCTCAATGAGGAAGATGGATGCCTTGATGATTGGGAGGCCGTTGCCGATGCTTTAAACGCAAACAGTAACGAGCATTCCATGGTTTCAGAGTCTCCTATAGAGCATACGATTGATTACGTTGATTCAGAAGCAGCCAAGGACTTAACGAAGAAAGAGTTCAGGTCAGCAGTTTCTGAATCACATATTAGCTGTCGAGCATGGAAACCCGATGACACTCTTCGTCCAAGGTGTTTGCCCGACCTCTCAAAGCCGCATAACTCTCAGTTAAATTCAAACCGGCACAGTAACCACAAAATTGTACCTTGGTCATGGAGAACAATAATTTCTCAACCTAGTCAATGTCCTATCTGTTACGAGGATTTAGACGTGACAGACTCCGAATTTCTTCCTTGTTCGTGTGGATTTCATCTCTGCCTTTTTTGTCACAAAAAGATCGTCGAGGCTGATGGACGATGTCCGGGATGCAGAAAACTATATAATCATGTAGATGAAAATGTTGGATTCAATATAGAAACAAACACTTTTTATATGACTCAGTCATGCCGTATGAGTACAGGGTGCTAG

Protein sequence

>Msa0903590

MAPGSISDPPFSSKKKRTNGSVRLKQIKLDVRREQWLSRVKKGCDVDSTGRVDSDPSSKHIASEENQPSYKEIRRKEREDGTCIQANDSGSIINNSIQSSYNHDESRNGFNGSRSSSTSTFSSGDLNEEDGCLDDWEAVADALNANSNEHSMVSESPIEHTIDYVDSEAAKDLTKKEFRSAVSESHISCRAWKPDDTLRPRCLPDLSKPHNSQLNSNRHSNHKIVPWSWRTIISQPSQCPICYEDLDVTDSEFLPCSCGFHLCLFCHKKIVEADGRCPGCRKLYNHVDENVGFNIETNTFYMTQSCRMSTGC*