AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375320


Find 436 sgRNAs with CRISPR-Local

Find 1197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr3_1 gene 74996613 75013338 74996613 ID=Msa0375320;Name=Msa0375320
chr3_1 mRNA 74996613 75013338 74996613 ID=Msa0375320-mRNA-1;Parent=Msa0375320;Name=Msa0375320-mRNA-1;_AED=0.17;_eAED=0.17;_QI=1129|0.77|0.86|0.95|0.95|0.91|23|483|1333
chr3_1 exon 74996613 74996994 74996613 ID=Msa0375320-mRNA-1:exon:17522;Parent=Msa0375320-mRNA-1
chr3_1 exon 74997196 74998020 74997196 ID=Msa0375320-mRNA-1:exon:17523;Parent=Msa0375320-mRNA-1
chr3_1 exon 74998910 74999011 74998910 ID=Msa0375320-mRNA-1:exon:17524;Parent=Msa0375320-mRNA-1
chr3_1 exon 75000025 75001207 75000025 ID=Msa0375320-mRNA-1:exon:17525;Parent=Msa0375320-mRNA-1
chr3_1 exon 75001475 75001546 75001475 ID=Msa0375320-mRNA-1:exon:17526;Parent=Msa0375320-mRNA-1
chr3_1 exon 75001845 75001916 75001845 ID=Msa0375320-mRNA-1:exon:17527;Parent=Msa0375320-mRNA-1
chr3_1 exon 75002212 75002283 75002212 ID=Msa0375320-mRNA-1:exon:17528;Parent=Msa0375320-mRNA-1
chr3_1 exon 75002580 75002651 75002580 ID=Msa0375320-mRNA-1:exon:17529;Parent=Msa0375320-mRNA-1
chr3_1 exon 75002956 75003027 75002956 ID=Msa0375320-mRNA-1:exon:17530;Parent=Msa0375320-mRNA-1
chr3_1 exon 75003320 75003391 75003320 ID=Msa0375320-mRNA-1:exon:17531;Parent=Msa0375320-mRNA-1
chr3_1 exon 75003680 75004089 75003680 ID=Msa0375320-mRNA-1:exon:17532;Parent=Msa0375320-mRNA-1
chr3_1 exon 75006810 75007634 75006810 ID=Msa0375320-mRNA-1:exon:17533;Parent=Msa0375320-mRNA-1
chr3_1 exon 75007929 75008029 75007929 ID=Msa0375320-mRNA-1:exon:17534;Parent=Msa0375320-mRNA-1
chr3_1 exon 75008135 75008237 75008135 ID=Msa0375320-mRNA-1:exon:17535;Parent=Msa0375320-mRNA-1
chr3_1 exon 75008506 75008583 75008506 ID=Msa0375320-mRNA-1:exon:17536;Parent=Msa0375320-mRNA-1
chr3_1 exon 75008749 75008841 75008749 ID=Msa0375320-mRNA-1:exon:17537;Parent=Msa0375320-mRNA-1
chr3_1 exon 75009304 75009387 75009304 ID=Msa0375320-mRNA-1:exon:17538;Parent=Msa0375320-mRNA-1
chr3_1 exon 75010354 75010452 75010354 ID=Msa0375320-mRNA-1:exon:17539;Parent=Msa0375320-mRNA-1
chr3_1 exon 75010879 75010941 75010879 ID=Msa0375320-mRNA-1:exon:17540;Parent=Msa0375320-mRNA-1
chr3_1 exon 75011322 75011352 75011322 ID=Msa0375320-mRNA-1:exon:17541;Parent=Msa0375320-mRNA-1
chr3_1 exon 75011746 75011792 75011746 ID=Msa0375320-mRNA-1:exon:17542;Parent=Msa0375320-mRNA-1
chr3_1 exon 75011996 75012054 75011996 ID=Msa0375320-mRNA-1:exon:17543;Parent=Msa0375320-mRNA-1
chr3_1 exon 75012642 75013338 75012642 ID=Msa0375320-mRNA-1:exon:17544;Parent=Msa0375320-mRNA-1
chr3_1 five_prime_UTR 74996613 74996994 74996613 ID=Msa0375320-mRNA-1:five_prime_utr;Parent=Msa0375320-mRNA-1
chr3_1 five_prime_UTR 74997196 74997942 74997196 ID=Msa0375320-mRNA-1:five_prime_utr;Parent=Msa0375320-mRNA-1
chr3_1 CDS 74997943 74998020 74997943 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 74998910 74999011 74998910 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75000025 75001207 75000025 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75001475 75001546 75001475 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75001845 75001916 75001845 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75002212 75002283 75002212 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75002580 75002651 75002580 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75002956 75003027 75002956 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75003320 75003391 75003320 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75003680 75004089 75003680 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75006810 75007634 75006810 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75007929 75008029 75007929 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75008135 75008237 75008135 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75008506 75008583 75008506 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75008749 75008841 75008749 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75009304 75009387 75009304 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75010354 75010452 75010354 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75010879 75010941 75010879 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75011322 75011352 75011322 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75011746 75011792 75011746 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75011996 75012054 75011996 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 CDS 75012642 75012855 75012642 ID=Msa0375320-mRNA-1:cds;Parent=Msa0375320-mRNA-1
chr3_1 three_prime_UTR 75012856 75013338 75012856 ID=Msa0375320-mRNA-1:three_prime_utr;Parent=Msa0375320-mRNA-1
Gene Sequence

>Msa0375320

ATGTCGCGTTGCTTTCCATTTCCACCACCAGGATATGAAAAGAAATCTAGAACAGATGATGTGGATTTACTAAGAAAGGTATTCAAACCCACATTGACACCGCCTATGTTTGACCCTCCAAACCACCCTGTCACTCAATTGGAATATCTATCTGTTCCTATATTTCACTCATTTGAGTTGGAAAGGCGCAAAGAAAAAAAACATAAAAAAGAGAAAAAAGACAGAGAGAAGAAGGAAAGTAAGGAAAATGGGGAAAAGGAAGGAAGGGATGGAAAGCATAAGGATAAAAAGGACAAAAAAGAAAAAAGCAGAGAAAAAAAGAAAGATAAAGATAAGGACAAGGACAAGGACAATGGTAAAGATAAAAGTAAAATCAGTGCTGCAGATGGGAGAGGATCTCCAGCACAAGCTCAGGGTCTTAATGCTGGTAACCTACATCAAAAGGAAATCAAACAGAATGATAAGAAGGCTTTCTTGTTTGAAGATAGACTTACCAAACAGCATGGCAGTAACAATGGAGAGAAGGCCAGAGAGAATAATCATCTGGTTGAGGAGAACAAGGACTCTAAATTCCTCATGGAGTTGGACAGGAGGATTAGGAACAATGATGGAGGAGCTGGGACTCAATTGGTTCAAAAATTTACCACTGCAGACTCTAGAAAGGATGAAGAGACTGTTAGGCTGGTTGCTAAAATTAGTGGCGCCGGCACCTGGCCTGATGGTAAGGAGAAGCTCCAGAATAAGGGTGTTGATGCTAAAAAGATTGATGGGAGAGGAATCCGTGCCGAGGCCCGACCAATTGGAAATGCAACAGTTCAGAATGATGCTGTTGATGGTAAAAAGATTGGCACCTGGCCTAATGGTAAGGAGAAGTTCCAGGATAAGGGCATTGATGCTAAAAAGATTGATGGGAGAGGAATCTGTACAGAGGCCCGACCAATTGGAAATGCAGCAGTTCAGAATCATGATGGGAACTGTCATCCTAGACCTTTGGAGAAGAATTTTGACAAAACTTTGGAAGGAAGAGTTGAAGGAACAGACAGGACTAAGGAAAAAAAAGATGATAAACGACGGGATAAAAGGAAAGATGATAAACGGGGAGATAAAAGGAAAGAAAAAGATAAGGAGAAAAAAGGGCACGGGAAGGACAAAGACAGGGATAGAGAGAAAAAAAAGGAAGAGAAAGCGAAACAGAAAATTGAAAATAGAAATGGAGAGCAGAATAAATTAAAAGACAGCAACAAAGCTGGTCCAGTAGACCCAAATTCTTCTACACAGGTATCCAAGAACAGTCATGAGAATTCTATCATTGGGGAAAATCTCAAGAAACGGAATGAAATTGATTCGAATGGAGTTCTACATGCCCATGAGAATTCTATCACCGGGGGAAATCTCAAGAAACGGAAGGAAATTGATTCTAATGGAGTTCTACATGCCCATGAGAATTCTATCACTGGGGGGAATCTCAAGAAACGGAAGGAAATTGATTCTAATGGAGTTCTACATGCCCATGAGAATTCTATCACTGGGGGAAATCTCAAGAAACGGAAGGAAATTGATCCTAATGGAATTCTACATGCCCATGAGAATTCTATCATTGGGGACAATCTCAAGAAACAGAAGGAAATTGAATCTAATGGAGTTCTACATGCCCATGCAAATTCTATCATTGGTGACAATCTCAAGAAACCGAAGGAAATTAATTCTAATGGAGTTTTACATGCTCATGGGAATTCTATCATTGGGGACAATCTCAAGAAACGGAAGGAAATTGATTCCAATGGAGTTCTACATGCCCATGACAGTAGGCCCAGTATGTTGCCAGGACCCTCTTCCTCTCATCCTTTCACTGAAAATGGAAGGTTATTGGAACCTTGCCAAATTTCCCTTATAAATGCTTCAGATGGGCCTGCAGCCACCACTAATGTTAAGGTAGAAAACAAGGATCGCAAGATAAATGGCATCATTGAAGCTCCAACATCTGTGGTTTCCCCAAACAAGATTCCCACTGCCACAGTGCCAGCTAATCCCGTGATTAAAATACCTAAACCACATCCAGATACCAAGTACATAAGTCAGGTATATTCCGTGCCAAAAGCAAATGAGTGGTCTGATTTTGATGACCAAGAGTGGCTGTTTGGCAGCAATCATTCCCAAGAAAGAAAACCTGTGGTGAAGTCTTCAGAGGTTGTGGATACACTGCAGATTCCCTTATTTGGGGGACTTCAATCTCTATGTCCAATTCGAAAGGATTTTGAGAGTAGAGGCGTGGTAGAAGAAAATGTACATTTAGGTTTGCATTATGGAACACCCTCACTCAGAACTTCATTTACAACACAAGCTATAAACACTGTCTCAGTTTGGGAAAATTCACCACTTAGTGCTGGAGAATTCAGATATAGTTTATCTACCGCGCCCGAGGAATTAGTAGACTTTGCAAAACAATCAACTGAAGGGTCTGATGCATTAGTAGCACCTGCTGTGCAACCAGAAGCAATATTATCAAGTACTGATACAACGTCGGGGAAGTTTGAATCTGTGTCGAATTTGGTTGAAGGGGGTAATGAATCATTAGCAGCAACTAAAGCAAGTGCCACTGAAGTTTTTGCTGGAATCAATGAGACATTCAGCGACTCAATTAATAAGGGAGAAAATGCTCTTCGAAGCTCAGTGGATTCGGCAACTTCTTTTATTGATTCCGTTGTTAAAAATGCTACTACGTCTGCAGATAATGCTTTTAGTAAGGTGTTTTCTGCTGCTGATCAAACGGGGGAGTTAGCGAATAAGAAAATTACTAGCTTTTCAAGTGAAATAGATGGAGTCACCAGCAAAGCGCCTGGTTTGGTTATTGATGTGTTGCGCCGTACAGTGGTTGCAGTTGAGAGTTCTCTGTCAAGTGGGGCTTCTTATGTTGTTTACCTATATGGGTCGGCGAAGGAGTTTCTTCCTGCAGAGATCAGGGATACAGTCAATATATATGAAGATAAAGCAGCACAAGTCTTGAGGCCTGTTGGGTCTGCAACTCAACAGATATACATGGCTTTCTATTCACTGGAGAAGAGTCTTGGCTTGGATCCAAATGACCCAATTATTCCATTTGTTGTTTTTGTGGGCTCTTCAGCAACATTATGGACTATTTATTGGTTGTGGAAATATGGAGGTTACTCGGGAGATTTATCCCCTAAATCAGCTTTCGAGCTCTTGGCCGGGGACTCAAATGCTGTACTTATAGATGACTTGCGAGAAAAAGATGGTATTCCTGATATTCGACGGGCTGCTCGGTTTCGCTATGCGAGTGTAACTCCAATTGAGGTTGATGGCTCCATACGCAAGTTGTTGAAGGGTGGTAGAGACCTAGATGACTCCTTGATCGCTGCTATTATTCAAAATTTGAAAATTGTTAAGGACAGTTCCAAGGTTATTGTGTTGGATGCTGATGGTACTCGTTCTAAAGGCATTGCAAGATCCTTGAAGAAAATTGGGGTTAAGAATCCGTACTTGGTCGAAGGTGGCTTTCAGTCTTGGGTAAAACAAAGTCTCCGCATCAAGGAACTCAAACCTGAAACAGCACTTACCATACTCAATGAGGAAGCTGAAGCAATTCTAGAGGATATTAGACCTTCTCCTTGGCAATTTTTAGGTTTTGGTACGGCACTACTTGCGGGGTCATATGCATTAGTAGAGTGGGAGAAAACATTGCAGTTAATTGGTGTATTTGGCCTCAGTCTGACCATATATCTGCGGGTTTCTTCGTATGAAAGGTCAGAAGATTTGAACCAAGATGTGAGGTTTTTGTTGCTTGCTCCTGTTAAAATTGGAGGTCAGGCATTTTCATGGGCTGCTGGAAAATTGGAATCAAATGGCATAGGGTTACCTACATCACCTTCATCATTGGATGTTCAGAACCGGGTACTACAGGCTGCTGCCAAACATGAATCCCAACCATCTGATAGTGAAGGGAGCCAAGACCCGACTCCTGAATCCACAGTTTCTCTCAATTAA

Protein sequence

>Msa0375320

MSRCFPFPPPGYEKKSRTDDVDLLRKVFKPTLTPPMFDPPNHPVTQLEYLSVPIFHSFELERRKEKKHKKEKKDREKKESKENGEKEGRDGKHKDKKDKKEKSREKKKDKDKDKDKDNGKDKSKISAADGRGSPAQAQGLNAGNLHQKEIKQNDKKAFLFEDRLTKQHGSNNGEKARENNHLVEENKDSKFLMELDRRIRNNDGGAGTQLVQKFTTADSRKDEETVRLVAKISGAGTWPDGKEKLQNKGVDAKKIDGRGIRAEARPIGNATVQNDAVDGKKIGTWPNGKEKFQDKGIDAKKIDGRGICTEARPIGNAAVQNHDGNCHPRPLEKNFDKTLEGRVEGTDRTKEKKDDKRRDKRKDDKRGDKRKEKDKEKKGHGKDKDRDREKKKEEKAKQKIENRNGEQNKLKDSNKAGPVDPNSSTQVSKNSHENSIIGENLKKRNEIDSNGVLHAHENSITGGNLKKRKEIDSNGVLHAHENSITGGNLKKRKEIDSNGVLHAHENSITGGNLKKRKEIDPNGILHAHENSIIGDNLKKQKEIESNGVLHAHANSIIGDNLKKPKEINSNGVLHAHGNSIIGDNLKKRKEIDSNGVLHAHDSRPSMLPGPSSSHPFTENGRLLEPCQISLINASDGPAATTNVKVENKDRKINGIIEAPTSVVSPNKIPTATVPANPVIKIPKPHPDTKYISQVYSVPKANEWSDFDDQEWLFGSNHSQERKPVVKSSEVVDTLQIPLFGGLQSLCPIRKDFESRGVVEENVHLGLHYGTPSLRTSFTTQAINTVSVWENSPLSAGEFRYSLSTAPEELVDFAKQSTEGSDALVAPAVQPEAILSSTDTTSGKFESVSNLVEGGNESLAATKASATEVFAGINETFSDSINKGENALRSSVDSATSFIDSVVKNATTSADNAFSKVFSAADQTGELANKKITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFLPAEIRDTVNIYEDKAAQVLRPVGSATQQIYMAFYSLEKSLGLDPNDPIIPFVVFVGSSATLWTIYWLWKYGGYSGDLSPKSAFELLAGDSNAVLIDDLREKDGIPDIRRAARFRYASVTPIEVDGSIRKLLKGGRDLDDSLIAAIIQNLKIVKDSSKVIVLDADGTRSKGIARSLKKIGVKNPYLVEGGFQSWVKQSLRIKELKPETALTILNEEAEAILEDIRPSPWQFLGFGTALLAGSYALVEWEKTLQLIGVFGLSLTIYLRVSSYERSEDLNQDVRFLLLAPVKIGGQAFSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGSQDPTPESTVSLN*