AlfalfaGEDB | Msa0219820

M. sativa cultivar zhongmu-4 / Msa0219820

KEGG: K01177
GO: -
PFAM: PF01373.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219820	XP_003597045.2	90.032	632	21	1	1	632	1	590	0.0	1180

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219820	sp\|P10538\|AMYB_SOYBN	68.037	535	129	1	76	610	3	495	0.0	774

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219820	G7IKM6	90.032	632	21	1	1	632	1	590	0.0	1180

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa0219820	0.834576	2.766576e-56	-8.615850e-47
Msa0002700	Msa0219820	0.836307	1.010247e-56	-8.615850e-47
Msa0003370	Msa0219820	0.813332	2.700649e-51	-8.615850e-47
Msa0005500	Msa0219820	0.826356	2.837929e-54	-8.615850e-47
Msa0016830	Msa0219820	0.829881	4.016485e-55	-8.615850e-47
Msa0018010	Msa0219820	0.801237	9.900867e-49	-8.615850e-47
Msa0021570	Msa0219820	0.825538	4.438108e-54	-8.615850e-47
Msa0028410	Msa0219820	0.807850	4.132640e-50	-8.615850e-47
Msa0028450	Msa0219820	0.811101	8.284400e-51	-8.615850e-47
Msa0028940	Msa0219820	0.805934	1.050224e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219820	MtrunA17_Chr2g0323051	90.032	632	21	1	1	632	1	590	0.0	1180
Msa0219820	MtrunA17_Chr4g0023601	67.547	530	130	1	81	610	8	495	0.0	773
Msa0219820	MtrunA17_Chr5g0400001	46.316	475	196	5	86	557	87	505	1.29e-143	428
Msa0219820	MtrunA17_Chr5g0399991	46.234	478	198	5	83	557	86	507	2.39e-143	427
Msa0219820	MtrunA17_Chr4g0055281	45.347	505	215	8	59	557	53	502	2.26e-142	425
Msa0219820	MtrunA17_Chr6g0481031	43.984	507	220	11	86	577	106	563	4.35e-142	425
Msa0219820	MtrunA17_Chr7g0247631	44.223	502	227	7	63	559	241	694	8.34e-135	410
Msa0219820	MtrunA17_Chr5g0408851	38.155	477	244	5	85	559	217	644	5.16e-113	352
Msa0219820	MtrunA17_Chr8g0388651	34.369	483	258	9	87	560	80	512	3.87e-93	297
Msa0219820	MtrunA17_Chr2g0286431	32.017	481	264	9	83	558	80	502	5.07e-85	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219820	AT2G32290.1	60.445	584	182	4	50	632	42	577	0.0	728
Msa0219820	AT4G15210.1	58.692	535	178	2	77	610	5	497	0.0	674
Msa0219820	AT4G15210.3	58.642	486	159	1	125	610	1	444	0.0	620
Msa0219820	AT4G15210.4	58.642	486	159	1	125	610	1	444	0.0	620
Msa0219820	AT4G15210.2	60.938	448	132	2	77	523	5	410	0.0	583
Msa0219820	AT4G00490.1	48.117	478	196	5	86	559	95	524	6.13e-156	460
Msa0219820	AT3G23920.1	44.841	504	222	8	86	577	106	565	3.86e-148	441
Msa0219820	AT4G17090.1	45.816	478	200	7	86	557	86	510	4.97e-145	432
Msa0219820	AT2G45880.1	42.713	494	227	7	73	559	233	677	3.70e-131	401
Msa0219820	AT5G45300.1	37.866	478	247	5	85	560	254	683	2.54e-110	347

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Find 146 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGAGAAACAGCTGA+AGG	0.651352	2_1:+67686339	Msa0219820:CDS
AAAAGGGCCCTCCAAAACTA+AGG	0.504860	2_1:+67688811	Msa0219820:CDS
AAAATTTCCCTTTCTCTGTT+TGG	0.305976	2_1:-67687700	None:intergenic
AAACACATAAATAAGAGAAG+TGG	0.573088	2_1:-67684325	None:intergenic
AAATAAATAAATAAATAAAT+AGG	0.289962	2_1:+67689356	Msa0219820:three_prime_UTR
AACAGATTGCTGGAATCCAC+TGG	0.553445	2_1:+67688258	Msa0219820:intron
AACCAGTGAAGCCATATCCA+TGG	0.611293	2_1:+67689108	Msa0219820:CDS
AACTGAAAATGTGAATGAAA+AGG	0.473578	2_1:+67689221	Msa0219820:exon
AAGAGCAGGCCATCCTGAAT+GGG	0.510122	2_1:+67687604	Msa0219820:CDS
AAGTTCCTGCGCACAACTTT+TGG	0.311792	2_1:-67688441	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGTGTTTGTGTAATGAA+GGG	-	chr2_1:67684391-67684410	None:intergenic	30.0%
TTGTTGTGTTTGTGTAATGA+AGG	-	chr2_1:67684392-67684411	None:intergenic	30.0%
GTTAAAACCAAATTCAACCT+TGG	-	chr2_1:67684893-67684912	None:intergenic	30.0%
AAAAGTGAAGACCAAAAGTT+GGG	-	chr2_1:67684924-67684943	None:intergenic	30.0%
AACTTGTAATATTTGTGCTG+TGG	+	chr2_1:67684950-67684969	Msa0219820:intron	30.0%
TAAAACGCAATTGCATATGA+GGG	-	chr2_1:67685451-67685470	None:intergenic	30.0%
TTAAAACGCAATTGCATATG+AGG	-	chr2_1:67685452-67685471	None:intergenic	30.0%
GTTCCATTTCAAAAACATGT+TGG	+	chr2_1:67686262-67686281	Msa0219820:intron	30.0%
TTTCCATTCCATTACCTAAA+TGG	+	chr2_1:67686548-67686567	Msa0219820:CDS	30.0%
TTCCATTCCATTACCTAAAT+GGG	+	chr2_1:67686549-67686568	Msa0219820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	67684240	67689389	67684240	ID=Msa0219820;Name=Msa0219820
chr2_1	mRNA	67684240	67689389	67684240	ID=Msa0219820-mRNA-1;Parent=Msa0219820;Name=Msa0219820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=271\|0.75\|0.88\|1\|1\|1\|9\|163\|632
chr2_1	exon	67684240	67684717	67684240	ID=Msa0219820-mRNA-1:exon:19116;Parent=Msa0219820-mRNA-1
chr2_1	exon	67686144	67686215	67686144	ID=Msa0219820-mRNA-1:exon:19117;Parent=Msa0219820-mRNA-1
chr2_1	exon	67686298	67686696	67686298	ID=Msa0219820-mRNA-1:exon:19118;Parent=Msa0219820-mRNA-1
chr2_1	exon	67686866	67686991	67686866	ID=Msa0219820-mRNA-1:exon:19119;Parent=Msa0219820-mRNA-1
chr2_1	exon	67687084	67687248	67687084	ID=Msa0219820-mRNA-1:exon:19120;Parent=Msa0219820-mRNA-1
chr2_1	exon	67687560	67687823	67687560	ID=Msa0219820-mRNA-1:exon:19121;Parent=Msa0219820-mRNA-1
chr2_1	exon	67688263	67688472	67688263	ID=Msa0219820-mRNA-1:exon:19122;Parent=Msa0219820-mRNA-1
chr2_1	exon	67688693	67688932	67688693	ID=Msa0219820-mRNA-1:exon:19123;Parent=Msa0219820-mRNA-1
chr2_1	exon	67689011	67689389	67689011	ID=Msa0219820-mRNA-1:exon:19124;Parent=Msa0219820-mRNA-1
chr2_1	five_prime_UTR	67684240	67684510	67684240	ID=Msa0219820-mRNA-1:five_prime_utr;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67684511	67684717	67684511	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67686144	67686215	67686144	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67686298	67686696	67686298	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67686866	67686991	67686866	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67687084	67687248	67687084	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67687560	67687823	67687560	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67688263	67688472	67688263	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67688693	67688932	67688693	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	CDS	67689011	67689226	67689011	ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1	three_prime_UTR	67689227	67689389	67689227	ID=Msa0219820-mRNA-1:three_prime_utr;Parent=Msa0219820-mRNA-1

Gene Sequence

>Msa0219820

ATGAGGACGACGATTGATACTTTTGAGGTTCACGAAAGGTATTTTCAAAGGAGTAACGAAGCTATACGTGCAGATAGAGCAAGGAAGCCAAATTCAAGAACAAAGCAAGCCTTCAAATTTGATAATATTCATCGTGCTTCTGTCAACAAACAACGTTCTGTGTCTTTGTCAGAATTCAAAGCTACAGCAATTGCTGAACCTGCAGAGGCACCAATTGTTCCTCCAACATACGAAGATCCAATGCTTGCAAATTATGTACCTATATATGTGATGCTCCCACTAGGGGTGATTACAAACGACAATGTCTTGGACGATAGAGCAAAACTCGAGAAACAGCTGAAGGAGCTACGAGCAGCAGGTGTTGATGGAGTTATGGTTGATGTCTGGTGGGGTATAGTAGAATCAAAGGGTCCTCAGCAGTATGATTGGTCAGCATATAGGTCCTTGTTTCAACTGGTTCAGGATTGCAAACTTAAGTTACAAGCTATAATGTCATTTCATCAATGTGGAGGGAATATTGGAGATTCTGTTTCCATTCCATTACCTAAATGGGTACTTGAAGTTGGTGAATCAAATCCTGATATCTTTTACACCAATAGTTCAGGTATCAGGAATAAGGAATGTATTTCACTTGGTGTGGATAATAAACCTTTCTTTAATGGAAGAACTCCCATTCAGGTTTTTGATGTGTCTGTGACCGCTTTGCAACCTCAATTGCAGTCTCATCAGCCGTATTTGACAGAATTTTTTTGTAACATTAAGGATTGTGACACAGTCAAGTTACCTGTGTTGAAAAAGTTTATGATGTATAGCGACTATATGAAGAGTTTTAGAGAGAATATGGCAGATTTCTTAGAATCTGAGCTACTGATAGACATTGAAGTAGGACTTGGCCCTGCTGGAGAACTCAGATATCCTTCTTATGCAGAATCTCTAGGCTGGGTATTTCCTGGTATTGGAGAATTTAATTGCTATGACAAATATCTTCAAGCTGATTTCGAAGAGGCTGCAACAAGAGCAGGCCATCCTGAATGGGAGCTGCCTGATAATGCAGGGTCATCTAATGACACACCTGAATCTACAGAATTTTTCAGATCCAAGGGAACTTACCAAACAGAGAAAGGGAAATTTTTTCTTACATGGTATTCTAACAAATTGCTTACACATGGTGATGAAATCTTGGATGAAGCCAACAAAGTATTCCTAGGTTGCAAAGTGAAGTTAGCAGCAAAAATTGCTGGAATCCACTGGTGGTATAAAACTGAAAGCCATGCTGCAGAGCTTACTTCAGGATATTACAACTTAAGTGATAGAGATGGATACCGTCCCGTAGCAAGGATGTTCTCTCGACATAATGCTATATTGAATTTCACATGTCTTGAGATGAGAAATTCGGAGCAACCAGAAGAAGCCAAAAGTTGTGCGCAGGAACTTGTTCAGCAGGTCCTGAGTGGAGGGTGGAGAGAGAACCTTGAAGTTGCTGGGGAAAATGCACTTCCAAGGTATGACAGTGAAGGTTACAACCAAATTCTTCTAAATGCTAGACCAAATGGTGTTAACAAAAAGGGCCCTCCAAAACTAAGGATGTATGGAGTCACATACCTACGTTTGACAGAAGAATTATTCCAGAAACAAAATTTTGATATATTCAAAATCTTTGTGAAAAAGATGCATGCTAATCAGGATCTCTGTCCAGACCCAGAGAAATACTATCATTACACAGTCCCTATGGAAAGGTCAAAACCAAAGATTCCATTGGAGATTCTTCTTGAAGCAACAAAACCAGTGAAGCCATATCCATGGTCTGAAGTAACGGATATGAGTGTTAATGAAGCTACTGGATTTTTCTATGATTTACTAGCAATAATCTTGAGTGTGTTTAGAAGAAACCGAAACTGA

Protein sequence

>Msa0219820

MRTTIDTFEVHERYFQRSNEAIRADRARKPNSRTKQAFKFDNIHRASVNKQRSVSLSEFKATAIAEPAEAPIVPPTYEDPMLANYVPIYVMLPLGVITNDNVLDDRAKLEKQLKELRAAGVDGVMVDVWWGIVESKGPQQYDWSAYRSLFQLVQDCKLKLQAIMSFHQCGGNIGDSVSIPLPKWVLEVGESNPDIFYTNSSGIRNKECISLGVDNKPFFNGRTPIQVFDVSVTALQPQLQSHQPYLTEFFCNIKDCDTVKLPVLKKFMMYSDYMKSFRENMADFLESELLIDIEVGLGPAGELRYPSYAESLGWVFPGIGEFNCYDKYLQADFEEAATRAGHPEWELPDNAGSSNDTPESTEFFRSKGTYQTEKGKFFLTWYSNKLLTHGDEILDEANKVFLGCKVKLAAKIAGIHWWYKTESHAAELTSGYYNLSDRDGYRPVARMFSRHNAILNFTCLEMRNSEQPEEAKSCAQELVQQVLSGGWRENLEVAGENALPRYDSEGYNQILLNARPNGVNKKGPPKLRMYGVTYLRLTEELFQKQNFDIFKIFVKKMHANQDLCPDPEKYYHYTVPMERSKPKIPLEILLEATKPVKPYPWSEVTDMSVNEATGFFYDLLAIILSVFRRNRN*