AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219820 MtrunA17_Chr2g0323051 90.032 632 21 1 1 632 1 590 0.0 1180
Msa0219820 MtrunA17_Chr4g0023601 67.547 530 130 1 81 610 8 495 0.0 773
Msa0219820 MtrunA17_Chr5g0400001 46.316 475 196 5 86 557 87 505 1.29e-143 428
Msa0219820 MtrunA17_Chr5g0399991 46.234 478 198 5 83 557 86 507 2.39e-143 427
Msa0219820 MtrunA17_Chr4g0055281 45.347 505 215 8 59 557 53 502 2.26e-142 425
Msa0219820 MtrunA17_Chr6g0481031 43.984 507 220 11 86 577 106 563 4.35e-142 425
Msa0219820 MtrunA17_Chr7g0247631 44.223 502 227 7 63 559 241 694 8.34e-135 410
Msa0219820 MtrunA17_Chr5g0408851 38.155 477 244 5 85 559 217 644 5.16e-113 352
Msa0219820 MtrunA17_Chr8g0388651 34.369 483 258 9 87 560 80 512 3.87e-93 297
Msa0219820 MtrunA17_Chr2g0286431 32.017 481 264 9 83 558 80 502 5.07e-85 276
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219820 AT2G32290.1 60.445 584 182 4 50 632 42 577 0.0 728
Msa0219820 AT4G15210.1 58.692 535 178 2 77 610 5 497 0.0 674
Msa0219820 AT4G15210.3 58.642 486 159 1 125 610 1 444 0.0 620
Msa0219820 AT4G15210.4 58.642 486 159 1 125 610 1 444 0.0 620
Msa0219820 AT4G15210.2 60.938 448 132 2 77 523 5 410 0.0 583
Msa0219820 AT4G00490.1 48.117 478 196 5 86 559 95 524 6.13e-156 460
Msa0219820 AT3G23920.1 44.841 504 222 8 86 577 106 565 3.86e-148 441
Msa0219820 AT4G17090.1 45.816 478 200 7 86 557 86 510 4.97e-145 432
Msa0219820 AT2G45880.1 42.713 494 227 7 73 559 233 677 3.70e-131 401
Msa0219820 AT5G45300.1 37.866 478 247 5 85 560 254 683 2.54e-110 347
Msa0219820 AT5G45300.2 37.866 478 247 5 85 560 252 681 3.35e-110 347
Msa0219820 AT5G45300.3 37.866 478 247 5 85 560 268 697 3.96e-110 347
Msa0219820 AT5G55700.1 37.551 490 240 10 86 560 92 530 2.06e-102 322
Msa0219820 AT5G55700.2 37.306 386 180 9 186 560 33 367 6.36e-76 247
Msa0219820 AT5G18670.1 28.000 500 298 9 60 557 62 501 2.73e-66 226

Find 146 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGCTTTGTTCTTGAATT+TGG 0.098697 2_1:-67684598 None:intergenic
GATAATAAACCTTTCTTTAA+TGG 0.136465 2_1:+67686658 Msa0219820:CDS
TTTCCATTCCATTACCTAAA+TGG 0.151036 2_1:+67686548 Msa0219820:CDS
TGATCAATACAATAATAAAA+TGG 0.192441 2_1:+67689251 Msa0219820:three_prime_UTR
GTCTAGCATTTAGAAGAATT+TGG 0.238931 2_1:-67688773 None:intergenic
AGAATCTCCAATGGAATCTT+TGG 0.246575 2_1:-67689071 None:intergenic
TATTCTCAGTTTGCAACTTT+TGG 0.250684 2_1:-67689330 None:intergenic
ACCAAATGGTGTTAACAAAA+AGG 0.258115 2_1:+67688794 Msa0219820:CDS
CCAACTTCAAGTACCCATTT+AGG 0.283522 2_1:-67686562 None:intergenic
CTCTGTTTGGTAAGTTCCCT+TGG 0.285933 2_1:-67687687 None:intergenic
CAGTGTTGGTTCTTCATTCA+TGG 0.286766 2_1:-67684301 None:intergenic
AAATAAATAAATAAATAAAT+AGG 0.289962 2_1:+67689356 Msa0219820:three_prime_UTR
ACACCAATAGTTCAGGTATC+AGG 0.292663 2_1:+67686608 Msa0219820:CDS
CATGAAGAAACGAGTGAAAA+AGG 0.295336 2_1:+67684226 None:intergenic
ACTCCATACATCCTTAGTTT+TGG 0.297957 2_1:-67688822 None:intergenic
AAAATTTCCCTTTCTCTGTT+TGG 0.305976 2_1:-67687700 None:intergenic
AAGTTCCTGCGCACAACTTT+TGG 0.311792 2_1:-67688441 None:intergenic
CATCAATGTGGAGGGAATAT+TGG 0.317025 2_1:+67686517 Msa0219820:CDS
GGCTGGGTATTTCCTGGTAT+TGG 0.319528 2_1:+67687216 Msa0219820:CDS
GTCCTTGTTTCAACTGGTTC+AGG 0.328216 2_1:+67686459 Msa0219820:CDS
TAATGGAAGAACTCCCATTC+AGG 0.337236 2_1:+67686675 Msa0219820:CDS
TATATGCATTGAAGTGCTTA+AGG 0.345801 2_1:+67684441 Msa0219820:five_prime_UTR
GTTACTTCAGACCATGGATA+TGG 0.352538 2_1:-67689119 None:intergenic
TAGTTCAGGTATCAGGAATA+AGG 0.355369 2_1:+67686615 Msa0219820:CDS
ATTCCTGATACCTGAACTAT+TGG 0.356194 2_1:-67686611 None:intergenic
GTGTAATGATAGTATTTCTC+TGG 0.363750 2_1:-67689026 None:intergenic
ATGAATATTATCAAATTTGA+AGG 0.373538 2_1:-67684620 None:intergenic
CCTTATTTATCTATGATCAT+TGG 0.375895 2_1:+67684277 Msa0219820:five_prime_UTR
TTCGTATAATTTGCAACATT+AGG 0.381270 2_1:+67684464 Msa0219820:five_prime_UTR
AGAGAGAACCTTGAAGTTGC+TGG 0.383951 2_1:+67688711 Msa0219820:CDS
TTAGATGACCCTGCATTATC+AGG 0.387069 2_1:-67687632 None:intergenic
ATATAGGTCCTTGTTTCAAC+TGG 0.393657 2_1:+67686453 Msa0219820:CDS
TTCCATTCCATTACCTAAAT+GGG 0.397927 2_1:+67686549 Msa0219820:CDS
TTATCAGGCAGCTCCCATTC+AGG 0.404839 2_1:-67687617 None:intergenic
CATGCTGCAGAGCTTACTTC+AGG 0.404999 2_1:+67688299 Msa0219820:CDS
CTTCTAAATGCTAGACCAAA+TGG 0.415851 2_1:+67688780 Msa0219820:CDS
CCAATGATCATAGATAAATA+AGG 0.417804 2_1:-67684277 None:intergenic
CTATTGGTGTAAAAGATATC+AGG 0.420283 2_1:-67686595 None:intergenic
TCAAGTACCCATTTAGGTAA+TGG 0.420866 2_1:-67686556 None:intergenic
GGTACATAATTTGCAAGCAT+TGG 0.423427 2_1:-67686174 None:intergenic
TCTCTAGGCTGGGTATTTCC+TGG 0.424224 2_1:+67687210 Msa0219820:CDS
TGATAGTATTTCTCTGGGTC+TGG 0.428002 2_1:-67689020 None:intergenic
GCAACCTAGGAATACTTTGT+TGG 0.430514 2_1:-67687780 None:intergenic
CTACGAGCAGCAGGTGTTGA+TGG 0.431754 2_1:+67686364 Msa0219820:CDS
GACCATGGATATGGCTTCAC+TGG 0.437679 2_1:-67689110 None:intergenic
ACTGGGAGCATCACATATAT+AGG 0.438101 2_1:-67686195 None:intergenic
GATCAATACAATAATAAAAT+GGG 0.440559 2_1:+67689252 Msa0219820:three_prime_UTR
TACACATGGTGATGAAATCT+TGG 0.441517 2_1:+67687751 Msa0219820:CDS
GGAGTTCTTCCATTAAAGAA+AGG 0.443893 2_1:-67686667 None:intergenic
CTAACTTCACTTTGCAACCT+AGG 0.444418 2_1:-67687793 None:intergenic
CAAGAGCAGGCCATCCTGAA+TGG 0.457085 2_1:+67687603 Msa0219820:CDS
AGCAGGTGTTGATGGAGTTA+TGG 0.457290 2_1:+67686372 Msa0219820:CDS
AGCTTATTAGCTAACCTGAA+TGG 0.459153 2_1:-67686689 None:intergenic
GCTTATTAGCTAACCTGAAT+GGG 0.459576 2_1:-67686688 None:intergenic
TCGTATGTTGGAGGAACAAT+TGG 0.460659 2_1:-67686147 None:intergenic
GATAAAATGGTTACCTCTGC+AGG 0.461646 2_1:-67684709 None:intergenic
TTGTTGTGTTTGTGTAATGA+AGG 0.462695 2_1:-67684389 None:intergenic
ATGGAGTTATGGTTGATGTC+TGG 0.466921 2_1:+67686383 Msa0219820:CDS
CTGAAGGAGCTACGAGCAGC+AGG 0.467025 2_1:+67686355 Msa0219820:CDS
AACTGAAAATGTGAATGAAA+AGG 0.473578 2_1:+67689221 Msa0219820:exon
ATGTCTTGAGATGAGAAATT+CGG 0.474129 2_1:+67688403 Msa0219820:CDS
CTTATGCAGAATCTCTAGGC+TGG 0.476981 2_1:+67687199 Msa0219820:CDS
TGCGCAGGAACTTGTTCAGC+AGG 0.478088 2_1:+67688451 Msa0219820:CDS
GGAACTTACCAAACAGAGAA+AGG 0.480151 2_1:+67687692 Msa0219820:CDS
AGGGTCCTCAGCAGTATGAT+TGG 0.482307 2_1:+67686425 Msa0219820:CDS
CTATCATTACACAGTCCCTA+TGG 0.483589 2_1:+67689037 Msa0219820:CDS
ATGAGTGTTAATGAAGCTAC+TGG 0.483626 2_1:+67689146 Msa0219820:CDS
GAGAGAACCTTGAAGTTGCT+GGG 0.485365 2_1:+67688712 Msa0219820:CDS
AGTTATGGTTGATGTCTGGT+GGG 0.485373 2_1:+67686387 Msa0219820:CDS
GAGTTATGGTTGATGTCTGG+TGG 0.486306 2_1:+67686386 Msa0219820:CDS
TTTATGTGTTTCCTAAAACT+TGG 0.489544 2_1:+67684337 Msa0219820:five_prime_UTR
GAAGAGGCTGCAACAAGAGC+AGG 0.493953 2_1:+67687590 Msa0219820:CDS
GAAGTAGGACTTGGCCCTGC+TGG 0.494381 2_1:+67687159 Msa0219820:CDS
CCTCCAAAACTAAGGATGTA+TGG 0.500922 2_1:+67688819 Msa0219820:CDS
ATTTGCAACATTAGGAGGAA+AGG 0.504203 2_1:+67684472 Msa0219820:five_prime_UTR
AAAAGGGCCCTCCAAAACTA+AGG 0.504860 2_1:+67688811 Msa0219820:CDS
AGCATTGGATCTTCGTATGT+TGG 0.505551 2_1:-67686159 None:intergenic
CCTAGAGATTCTGCATAAGA+AGG 0.509260 2_1:-67687195 None:intergenic
AAGAGCAGGCCATCCTGAAT+GGG 0.510122 2_1:+67687604 Msa0219820:CDS
CCTAAATGGGTACTTGAAGT+TGG 0.512349 2_1:+67686562 Msa0219820:CDS
GATTACAAACGACAATGTCT+TGG 0.515941 2_1:+67686306 Msa0219820:CDS
AGTATGATTGGTCAGCATAT+AGG 0.517008 2_1:+67686437 Msa0219820:CDS
GTCAAAACCAAAGATTCCAT+TGG 0.521408 2_1:+67689064 Msa0219820:CDS
CCTTCTTATGCAGAATCTCT+AGG 0.526590 2_1:+67687195 Msa0219820:CDS
GTTAATTAGTGTATAAAATG+AGG 0.528418 2_1:+67684494 Msa0219820:exon
GAAGCCAACAAAGTATTCCT+AGG 0.529512 2_1:+67687776 Msa0219820:CDS
TGTTGTGTTTGTGTAATGAA+GGG 0.535913 2_1:-67684388 None:intergenic
GGAATGTATTTCACTTGGTG+TGG 0.536095 2_1:+67686636 Msa0219820:CDS
GTGGGGTATAGTAGAATCAA+AGG 0.538270 2_1:+67686405 Msa0219820:CDS
GAACTTACCAAACAGAGAAA+GGG 0.543731 2_1:+67687693 Msa0219820:CDS
GTATAATTTGCAACATTAGG+AGG 0.545524 2_1:+67684467 Msa0219820:five_prime_UTR
TCTCTCTCCACCCTCCACTC+AGG 0.551609 2_1:-67688695 None:intergenic
TAACCTTCACTGTCATACCT+TGG 0.552850 2_1:-67688747 None:intergenic
TGATTACAGGTCCTGAGTGG+AGG 0.553219 2_1:+67688684 Msa0219820:intron
AACAGATTGCTGGAATCCAC+TGG 0.553445 2_1:+67688258 Msa0219820:intron
TACCCATTTAGGTAATGGAA+TGG 0.556693 2_1:-67686551 None:intergenic
GATTACAGGTCCTGAGTGGA+GGG 0.557755 2_1:+67688685 Msa0219820:intron
TGGGAGCTGCCTGATAATGC+AGG 0.560622 2_1:+67687623 Msa0219820:CDS
TCGAGAGAACATCCTTGCTA+CGG 0.563656 2_1:-67688357 None:intergenic
AAACACATAAATAAGAGAAG+TGG 0.573088 2_1:-67684325 None:intergenic
AGAAGCCAAAAGTTGTGCGC+AGG 0.573900 2_1:+67688436 Msa0219820:CDS
GTTATGGTTGATGTCTGGTG+GGG 0.576228 2_1:+67686388 Msa0219820:CDS
TTATGCAGAATCTCTAGGCT+GGG 0.578110 2_1:+67687200 Msa0219820:CDS
ATACAATAATAAAATGGGAA+AGG 0.578163 2_1:+67689257 Msa0219820:three_prime_UTR
ATGGATACCGTCCCGTAGCA+AGG 0.578558 2_1:+67688345 Msa0219820:CDS
GGCTGATGAGACTGCAATTG+AGG 0.580486 2_1:-67686896 None:intergenic
CTACTGATAGACATTGAAGT+AGG 0.580486 2_1:+67687144 Msa0219820:CDS
CGAGAGAACATCCTTGCTAC+GGG 0.581533 2_1:-67688356 None:intergenic
GGATATCTGAGTTCTCCAGC+AGG 0.582473 2_1:-67687174 None:intergenic
ATATCCATGGTCTGAAGTAA+CGG 0.582490 2_1:+67689121 Msa0219820:CDS
TGTAATGATAGTATTTCTCT+GGG 0.589768 2_1:-67689025 None:intergenic
ATCCTGAACCAGTTGAAACA+AGG 0.590334 2_1:-67686461 None:intergenic
ATGTCATTTCATCAATGTGG+AGG 0.591453 2_1:+67686508 Msa0219820:CDS
ATTGGATCTTCGTATGTTGG+AGG 0.593571 2_1:-67686156 None:intergenic
CTGGGGAAAATGCACTTCCA+AGG 0.595962 2_1:+67688730 Msa0219820:CDS
CTGAAGTAAGCTCTGCAGCA+TGG 0.601612 2_1:-67688298 None:intergenic
AATAAGGAATGTATTTCACT+TGG 0.602381 2_1:+67686631 Msa0219820:CDS
AACCAGTGAAGCCATATCCA+TGG 0.611293 2_1:+67689108 Msa0219820:CDS
ATAAGAGAAGTGGACAGTGT+TGG 0.612446 2_1:-67684315 None:intergenic
TGTCATTTCATCAATGTGGA+GGG 0.615775 2_1:+67686509 Msa0219820:CDS
TGGGGTATAGTAGAATCAAA+GGG 0.616212 2_1:+67686406 Msa0219820:CDS
AGCAATTGCTGAACCTGCAG+AGG 0.618481 2_1:+67684696 Msa0219820:CDS
TACAGGTCCTGAGTGGAGGG+TGG 0.618532 2_1:+67688688 Msa0219820:intron
TCTTCAAGCTGATTTCGAAG+AGG 0.621479 2_1:+67687574 Msa0219820:CDS
ATAGACATTGAAGTAGGACT+TGG 0.622597 2_1:+67687150 Msa0219820:CDS
TACAACTTAAGTGATAGAGA+TGG 0.622813 2_1:+67688326 Msa0219820:CDS
GCTTCAAGAAGAATCTCCAA+TGG 0.626349 2_1:-67689080 None:intergenic
CTATACGTGCAGATAGAGCA+AGG 0.627427 2_1:+67684572 Msa0219820:CDS
ATTACACAGTCCCTATGGAA+AGG 0.629072 2_1:+67689042 Msa0219820:CDS
AGAGAACCTTGAAGTTGCTG+GGG 0.631483 2_1:+67688713 Msa0219820:CDS
ACATTAAATTCTCCAATACC+AGG 0.631717 2_1:-67687228 None:intergenic
TCTAACAAATTGCTTACACA+TGG 0.637957 2_1:+67687737 Msa0219820:CDS
ATAATTCTTCTGTCAAACGT+AGG 0.642615 2_1:-67688851 None:intergenic
CAGGCAGCTCCCATTCAGGA+TGG 0.645263 2_1:-67687613 None:intergenic
ATAATGTCATTTCATCAATG+TGG 0.649124 2_1:+67686505 Msa0219820:CDS
GGGAGCTGCCTGATAATGCA+GGG 0.650214 2_1:+67687624 Msa0219820:CDS
AAAACTCGAGAAACAGCTGA+AGG 0.651352 2_1:+67686339 Msa0219820:CDS
ATATCCGTTACTTCAGACCA+TGG 0.651609 2_1:-67689125 None:intergenic
CTTCCAAGGTATGACAGTGA+AGG 0.658863 2_1:+67688744 Msa0219820:CDS
ATTTGATTACAGGTCCTGAG+TGG 0.659107 2_1:+67688681 Msa0219820:intron
AGAACATCCTTGCTACGGGA+CGG 0.669924 2_1:-67688352 None:intergenic
GCTGACCAATCATACTGCTG+AGG 0.670708 2_1:-67686430 None:intergenic
AATTCTAGTTCATAACACAA+AGG 0.694982 2_1:-67689302 None:intergenic
GATATCTGAGTTCTCCAGCA+GGG 0.705382 2_1:-67687173 None:intergenic
AGATTGCTGGAATCCACTGG+TGG 0.714797 2_1:+67688261 Msa0219820:intron
CTGCAATTGAGGTTGCAAAG+CGG 0.764072 2_1:-67686885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTTATTTATATTA+TGG + chr2_1:67686015-67686034 Msa0219820:intron 0.0%
!! AAATAAATAAATAAATAAAT+AGG + chr2_1:67689356-67689375 Msa0219820:three_prime_UTR 0.0%
!!! GATTATTTTTATAATATACA+TGG - chr2_1:67684364-67684383 None:intergenic 10.0%
!!! GATTTTTATGATATTTATTT+TGG - chr2_1:67684871-67684890 None:intergenic 10.0%
!!! GAAAGATAAATATTTTTTTA+AGG - chr2_1:67685612-67685631 None:intergenic 10.0%
!! ATATGAATTTCTAATATAAA+AGG - chr2_1:67685850-67685869 None:intergenic 10.0%
!!! TATTAGAAATTCATATTTTT+TGG + chr2_1:67685854-67685873 Msa0219820:intron 10.0%
!!! ATTAGAAATTCATATTTTTT+GGG + chr2_1:67685855-67685874 Msa0219820:intron 10.0%
!! TTATGTTATAACTATATATT+TGG - chr2_1:67686102-67686121 None:intergenic 10.0%
!!! TGCATAATAATTTTTTTATA+TGG + chr2_1:67687016-67687035 Msa0219820:intron 10.0%
!! ATGAATATTATCAAATTTGA+AGG - chr2_1:67684623-67684642 None:intergenic 15.0%
!!! TATAATTATTTGCTACTATA+TGG - chr2_1:67684747-67684766 None:intergenic 15.0%
!! ATAAATATCATAAAAATCCA+AGG + chr2_1:67684873-67684892 Msa0219820:intron 15.0%
!! ATAATAGACTAATAGTAATA+AGG + chr2_1:67685221-67685240 Msa0219820:intron 15.0%
!! TAATAGACTAATAGTAATAA+GGG + chr2_1:67685222-67685241 Msa0219820:intron 15.0%
!! TAAATGAGAAGTTAAAAAAA+AGG + chr2_1:67685292-67685311 Msa0219820:intron 15.0%
!! TTAAAGAATAATAGAAGAAA+AGG - chr2_1:67685576-67685595 None:intergenic 15.0%
!! TGATCATTATAATTTGAAAA+GGG - chr2_1:67685710-67685729 None:intergenic 15.0%
!! ATGATCATTATAATTTGAAA+AGG - chr2_1:67685711-67685730 None:intergenic 15.0%
!! TATTTCCTATTTATAGTTAA+TGG + chr2_1:67686725-67686744 Msa0219820:intron 15.0%
!!! AGAATTTTTTTGTAACATTA+AGG + chr2_1:67686928-67686947 Msa0219820:CDS 15.0%
!! TATCATATTTGTTTAGTTAT+TGG + chr2_1:67687049-67687068 Msa0219820:intron 15.0%
!! AAATCATTTCTTTCAATATA+TGG + chr2_1:67688184-67688203 Msa0219820:intron 15.0%
!!! ATATATCAAAATTTTGTTTC+TGG - chr2_1:67688878-67688897 None:intergenic 15.0%
!!! GTTAATATTTTCATATTTGA+TGG + chr2_1:67688952-67688971 Msa0219820:intron 15.0%
!! TGATCAATACAATAATAAAA+TGG + chr2_1:67689251-67689270 Msa0219820:three_prime_UTR 15.0%
!! GATCAATACAATAATAAAAT+GGG + chr2_1:67689252-67689271 Msa0219820:three_prime_UTR 15.0%
!! GTTAATTAGTGTATAAAATG+AGG + chr2_1:67684494-67684513 Msa0219820:exon 20.0%
!! GAAAGGAAAATATGATAAAA+TGG - chr2_1:67684725-67684744 None:intergenic 20.0%
!!! TATGTACTCTTTTTTATTAC+TGG - chr2_1:67685064-67685083 None:intergenic 20.0%
!! AACATGAAAATTAAAATCAG+AGG + chr2_1:67685355-67685374 Msa0219820:intron 20.0%
!! AAATTAAAATCAGAGGAATA+TGG + chr2_1:67685362-67685381 Msa0219820:intron 20.0%
!! ACAAAACAAGACAATTAAAA+AGG + chr2_1:67685659-67685678 Msa0219820:intron 20.0%
!!! CATGAATTAATATTTTTGAG+AGG + chr2_1:67685728-67685747 Msa0219820:intron 20.0%
!!! ATTGCACATTTATTTTTGAA+GGG - chr2_1:67685913-67685932 None:intergenic 20.0%
!!! TATTGCACATTTATTTTTGA+AGG - chr2_1:67685914-67685933 None:intergenic 20.0%
!! TAATAGTGTAATTACTTACT+GGG - chr2_1:67686215-67686234 None:intergenic 20.0%
!! ATAATAGTGTAATTACTTAC+TGG - chr2_1:67686216-67686235 None:intergenic 20.0%
!! AATGGAACATATATGTATAT+GGG - chr2_1:67686250-67686269 None:intergenic 20.0%
!! AAATGGAACATATATGTATA+TGG - chr2_1:67686251-67686270 None:intergenic 20.0%
!! GATAATAAACCTTTCTTTAA+TGG + chr2_1:67686658-67686677 Msa0219820:CDS 20.0%
!! GAATTCCATTAACTATAAAT+AGG - chr2_1:67686733-67686752 None:intergenic 20.0%
!! TTGACAAAGTTTATTGAAAA+CGG + chr2_1:67686805-67686824 Msa0219820:intron 20.0%
!! CAAAAAAATTCTGTCAAATA+CGG - chr2_1:67686920-67686939 None:intergenic 20.0%
!! TACATTCAGTATATGATTAA+TGG + chr2_1:67687911-67687930 Msa0219820:intron 20.0%
!!! GTGTCAAACTTTTTTATATT+AGG + chr2_1:67688639-67688658 Msa0219820:intron 20.0%
!!! TAATTTGTGTATTTGATTAC+AGG + chr2_1:67688671-67688690 Msa0219820:intron 20.0%
!! ATACAATAATAAAATGGGAA+AGG + chr2_1:67689257-67689276 Msa0219820:three_prime_UTR 20.0%
! CCAATGATCATAGATAAATA+AGG - chr2_1:67684280-67684299 None:intergenic 25.0%
!! CCTTATTTATCTATGATCAT+TGG + chr2_1:67684277-67684296 Msa0219820:five_prime_UTR 25.0%
! AAACACATAAATAAGAGAAG+TGG - chr2_1:67684328-67684347 None:intergenic 25.0%
! TTTATGTGTTTCCTAAAACT+TGG + chr2_1:67684337-67684356 Msa0219820:five_prime_UTR 25.0%
!! TTCGTATAATTTGCAACATT+AGG + chr2_1:67684464-67684483 Msa0219820:five_prime_UTR 25.0%
!! TTATTTGCTACTATATGGAA+AGG - chr2_1:67684742-67684761 None:intergenic 25.0%
! TAAAAATCCAAGGTTGAATT+TGG + chr2_1:67684883-67684902 Msa0219820:intron 25.0%
! TCATTATAATTTGAAAAGGG+AGG - chr2_1:67685707-67685726 None:intergenic 25.0%
! TTAGCATGTGAAATTATTGA+AGG - chr2_1:67685774-67685793 None:intergenic 25.0%
!!! TTGCACATTTATTTTTGAAG+GGG - chr2_1:67685912-67685931 None:intergenic 25.0%
!!! TCTTCTTTTTTTCTAGTACA+TGG - chr2_1:67685942-67685961 None:intergenic 25.0%
!! TAGTTATAACATAACCGTTT+TGG + chr2_1:67686108-67686127 Msa0219820:intron 25.0%
!! ATAATGTCATTTCATCAATG+TGG + chr2_1:67686505-67686524 Msa0219820:CDS 25.0%
! AATAAGGAATGTATTTCACT+TGG + chr2_1:67686631-67686650 Msa0219820:CDS 25.0%
! TTATTATGCAATTTGTCACA+CGG - chr2_1:67687006-67687025 None:intergenic 25.0%
!!! GTTTGTGAATTTTTTGCTAT+AGG + chr2_1:67687253-67687272 Msa0219820:intron 25.0%
!!! ACTCTTTTTTGTTTTGGATT+CGG - chr2_1:67687440-67687459 None:intergenic 25.0%
!!! AAGGGAAATTTTTTCTTACA+TGG + chr2_1:67687711-67687730 Msa0219820:CDS 25.0%
! ATTCATAAAAAACAGATTGC+TGG + chr2_1:67688248-67688267 Msa0219820:intron 25.0%
! TCATGAATAGAAACATGTTA+TGG - chr2_1:67688552-67688571 None:intergenic 25.0%
! TGTAATGATAGTATTTCTCT+GGG - chr2_1:67689028-67689047 None:intergenic 25.0%
!! TTCATTCACATTTTCAGTTT+CGG - chr2_1:67689220-67689239 None:intergenic 25.0%
! AACTGAAAATGTGAATGAAA+AGG + chr2_1:67689221-67689240 Msa0219820:exon 25.0%
!!! AATTCTAGTTCATAACACAA+AGG - chr2_1:67689305-67689324 None:intergenic 25.0%
! ATATACATGGACCAAGTTTT+AGG - chr2_1:67684351-67684370 None:intergenic 30.0%
TGTTGTGTTTGTGTAATGAA+GGG - chr2_1:67684391-67684410 None:intergenic 30.0%
TTGTTGTGTTTGTGTAATGA+AGG - chr2_1:67684392-67684411 None:intergenic 30.0%
! TATATGCATTGAAGTGCTTA+AGG + chr2_1:67684441-67684460 Msa0219820:five_prime_UTR 30.0%
! GTATAATTTGCAACATTAGG+AGG + chr2_1:67684467-67684486 Msa0219820:five_prime_UTR 30.0%
!!! TTCACGAAAGGTATTTTCAA+AGG + chr2_1:67684539-67684558 Msa0219820:CDS 30.0%
GTTAAAACCAAATTCAACCT+TGG - chr2_1:67684893-67684912 None:intergenic 30.0%
AAAAGTGAAGACCAAAAGTT+GGG - chr2_1:67684924-67684943 None:intergenic 30.0%
AACTTGTAATATTTGTGCTG+TGG + chr2_1:67684950-67684969 Msa0219820:intron 30.0%
TAAAACGCAATTGCATATGA+GGG - chr2_1:67685451-67685470 None:intergenic 30.0%
TTAAAACGCAATTGCATATG+AGG - chr2_1:67685452-67685471 None:intergenic 30.0%
GTTCCATTTCAAAAACATGT+TGG + chr2_1:67686262-67686281 Msa0219820:intron 30.0%
!! GAACCAACATGTTTTTGAAA+TGG - chr2_1:67686268-67686287 None:intergenic 30.0%
TTTCCATTCCATTACCTAAA+TGG + chr2_1:67686548-67686567 Msa0219820:CDS 30.0%
TTCCATTCCATTACCTAAAT+GGG + chr2_1:67686549-67686568 Msa0219820:CDS 30.0%
CTATTGGTGTAAAAGATATC+AGG - chr2_1:67686598-67686617 None:intergenic 30.0%
! ATCTTTTACACCAATAGTTC+AGG + chr2_1:67686601-67686620 Msa0219820:CDS 30.0%
TCAAATGTACATGTAGAGTT+TGG - chr2_1:67686789-67686808 None:intergenic 30.0%
ACCTGTGTTGAAAAAGTTTA+TGG + chr2_1:67686970-67686989 Msa0219820:CDS 30.0%
!!! ACCATAAACTTTTTCAACAC+AGG - chr2_1:67686974-67686993 None:intergenic 30.0%
!!! GAAGAGTTTTAGAGAGAATA+TGG + chr2_1:67687101-67687120 Msa0219820:CDS 30.0%
ACATTAAATTCTCCAATACC+AGG - chr2_1:67687231-67687250 None:intergenic 30.0%
! GTTTTCAACACAATGTTATG+TGG - chr2_1:67687294-67687313 None:intergenic 30.0%
!!! GTTCAGCAATTTTTTTGACT+AGG - chr2_1:67687396-67687415 None:intergenic 30.0%
!!! GTCGAAACTCTTTTTTGTTT+TGG - chr2_1:67687446-67687465 None:intergenic 30.0%
CTGAAAAATTCTGTAGATTC+AGG - chr2_1:67687665-67687684 None:intergenic 30.0%
!! TACAGAATTTTTCAGATCCA+AGG + chr2_1:67687670-67687689 Msa0219820:CDS 30.0%
!! ACAGAATTTTTCAGATCCAA+GGG + chr2_1:67687671-67687690 Msa0219820:CDS 30.0%
AAAATTTCCCTTTCTCTGTT+TGG - chr2_1:67687703-67687722 None:intergenic 30.0%
TCTAACAAATTGCTTACACA+TGG + chr2_1:67687737-67687756 Msa0219820:CDS 30.0%
CAGTTAGTTGTCAATGAATT+TGG - chr2_1:67687949-67687968 None:intergenic 30.0%
ATTTGATCACCTGAAAATTG+TGG - chr2_1:67687983-67688002 None:intergenic 30.0%
TGTTGTTAACCATAACTTTC+AGG - chr2_1:67688023-67688042 None:intergenic 30.0%
GTTAACAACATCCAAATTTG+TGG + chr2_1:67688033-67688052 Msa0219820:intron 30.0%
!! TGGTTGACGAAGTTATTTTA+GGG + chr2_1:67688053-67688072 Msa0219820:intron 30.0%
! TGATTAATTGCGTTGATAGA+CGG - chr2_1:67688100-67688119 None:intergenic 30.0%
!!! ATTTTTTTACGACCGAACTT+AGG - chr2_1:67688168-67688187 None:intergenic 30.0%
TACAACTTAAGTGATAGAGA+TGG + chr2_1:67688326-67688345 Msa0219820:CDS 30.0%
ATGTCTTGAGATGAGAAATT+CGG + chr2_1:67688403-67688422 Msa0219820:CDS 30.0%
GTCTAGCATTTAGAAGAATT+TGG - chr2_1:67688776-67688795 None:intergenic 30.0%
! ACCAAATGGTGTTAACAAAA+AGG + chr2_1:67688794-67688813 Msa0219820:CDS 30.0%
! CCAAATGGTGTTAACAAAAA+GGG + chr2_1:67688795-67688814 Msa0219820:CDS 30.0%
ATAATTCTTCTGTCAAACGT+AGG - chr2_1:67688854-67688873 None:intergenic 30.0%
!! TCATATTTGATGGTGTTTGA+AGG + chr2_1:67688962-67688981 Msa0219820:intron 30.0%
TGTTTGAAGGAACTAATCAA+AGG + chr2_1:67688975-67688994 Msa0219820:intron 30.0%
GTGTAATGATAGTATTTCTC+TGG - chr2_1:67689029-67689048 None:intergenic 30.0%
! TATTCTCAGTTTGCAACTTT+TGG - chr2_1:67689333-67689352 None:intergenic 30.0%
ATTTGCAACATTAGGAGGAA+AGG + chr2_1:67684472-67684491 Msa0219820:five_prime_UTR 35.0%
!!! ATACTTTTGAGGTTCACGAA+AGG + chr2_1:67684527-67684546 Msa0219820:CDS 35.0%
! GCTTGCTTTGTTCTTGAATT+TGG - chr2_1:67684601-67684620 None:intergenic 35.0%
! AACATAATGTCCCCAACTTT+TGG + chr2_1:67684910-67684929 Msa0219820:intron 35.0%
AAAGTGAAGACCAAAAGTTG+GGG - chr2_1:67684923-67684942 None:intergenic 35.0%
GAAAAGTGAAGACCAAAAGT+TGG - chr2_1:67684925-67684944 None:intergenic 35.0%
TGTAATATTTGTGCTGTGGT+TGG + chr2_1:67684954-67684973 Msa0219820:intron 35.0%
ATTCAGGAAATATGAGAGAG+AGG + chr2_1:67685031-67685050 Msa0219820:intron 35.0%
TCTCATAAGGATTCGGAATA+TGG - chr2_1:67685137-67685156 None:intergenic 35.0%
ATATTCCGAATCCTTATGAG+AGG + chr2_1:67685136-67685155 Msa0219820:intron 35.0%
ATACACCTCTCATAAGGATT+CGG - chr2_1:67685144-67685163 None:intergenic 35.0%
ATACACATACACCTCTCATA+AGG - chr2_1:67685150-67685169 None:intergenic 35.0%
GTCATGTGTCGAAAAACAAA+AGG + chr2_1:67685324-67685343 Msa0219820:intron 35.0%
ACTTTACACGTTAATCACTG+TGG - chr2_1:67685416-67685435 None:intergenic 35.0%
AATTTGAAAAGGGAGGAAAG+AGG - chr2_1:67685700-67685719 None:intergenic 35.0%
AGAAAAATCTGTAGAGCAAG+AGG + chr2_1:67685959-67685978 Msa0219820:intron 35.0%
! ATCCTATTGCAAGCTTTTCT+TGG - chr2_1:67686077-67686096 None:intergenic 35.0%
! CCTGCATTTTATGACCAAAA+CGG - chr2_1:67686125-67686144 None:intergenic 35.0%
! GGTACATAATTTGCAAGCAT+TGG - chr2_1:67686177-67686196 None:intergenic 35.0%
GATTACAAACGACAATGTCT+TGG + chr2_1:67686306-67686325 Msa0219820:CDS 35.0%
TGGGGTATAGTAGAATCAAA+GGG + chr2_1:67686406-67686425 Msa0219820:CDS 35.0%
! AGTATGATTGGTCAGCATAT+AGG + chr2_1:67686437-67686456 Msa0219820:CDS 35.0%
! ATATAGGTCCTTGTTTCAAC+TGG + chr2_1:67686453-67686472 Msa0219820:CDS 35.0%
! ATGTCATTTCATCAATGTGG+AGG + chr2_1:67686508-67686527 Msa0219820:CDS 35.0%
! TGTCATTTCATCAATGTGGA+GGG + chr2_1:67686509-67686528 Msa0219820:CDS 35.0%
!! TACCCATTTAGGTAATGGAA+TGG - chr2_1:67686554-67686573 None:intergenic 35.0%
TCAAGTACCCATTTAGGTAA+TGG - chr2_1:67686559-67686578 None:intergenic 35.0%
ATTCCTGATACCTGAACTAT+TGG - chr2_1:67686614-67686633 None:intergenic 35.0%
TAGTTCAGGTATCAGGAATA+AGG + chr2_1:67686615-67686634 Msa0219820:CDS 35.0%
GGAGTTCTTCCATTAAAGAA+AGG - chr2_1:67686670-67686689 None:intergenic 35.0%
GCTTATTAGCTAACCTGAAT+GGG - chr2_1:67686691-67686710 None:intergenic 35.0%
AGCTTATTAGCTAACCTGAA+TGG - chr2_1:67686692-67686711 None:intergenic 35.0%
CTACTGATAGACATTGAAGT+AGG + chr2_1:67687144-67687163 Msa0219820:CDS 35.0%
ATAGACATTGAAGTAGGACT+TGG + chr2_1:67687150-67687169 Msa0219820:CDS 35.0%
GTGTTGAAAACAAATCGACT+CGG + chr2_1:67687303-67687322 Msa0219820:intron 35.0%
!! AAAAAGTGCTATCATACCAG+TGG + chr2_1:67687363-67687382 Msa0219820:intron 35.0%
GAACTTACCAAACAGAGAAA+GGG + chr2_1:67687693-67687712 Msa0219820:CDS 35.0%
! TACACATGGTGATGAAATCT+TGG + chr2_1:67687751-67687770 Msa0219820:CDS 35.0%
! CTTCATTGACCACAATTTTC+AGG + chr2_1:67687971-67687990 Msa0219820:intron 35.0%
AGTTGAACACCTGAAAGTTA+TGG + chr2_1:67688011-67688030 Msa0219820:intron 35.0%
AACTTCGTCAACCACAAATT+TGG - chr2_1:67688047-67688066 None:intergenic 35.0%
!! GTGGTTGACGAAGTTATTTT+AGG + chr2_1:67688052-67688071 Msa0219820:intron 35.0%
!!! GGTTGACGAAGTTATTTTAG+GGG + chr2_1:67688054-67688073 Msa0219820:intron 35.0%
!! TTTCAGTTTTATACCACCAG+TGG - chr2_1:67688277-67688296 None:intergenic 35.0%
TGATTTCGCGATGTTACATT+AGG - chr2_1:67688596-67688615 None:intergenic 35.0%
CTTCTAAATGCTAGACCAAA+TGG + chr2_1:67688780-67688799 Msa0219820:CDS 35.0%
! CCCTTTTTGTTAACACCATT+TGG - chr2_1:67688798-67688817 None:intergenic 35.0%
!!! CATACATCCTTAGTTTTGGA+GGG - chr2_1:67688821-67688840 None:intergenic 35.0%
! ACTCCATACATCCTTAGTTT+TGG - chr2_1:67688825-67688844 None:intergenic 35.0%
GAAAAAGATGCATGCTAATC+AGG + chr2_1:67688911-67688930 Msa0219820:CDS 35.0%
AATCAAAGGTGAAATTCTGC+AGG + chr2_1:67688989-67689008 Msa0219820:intron 35.0%
!!! TTGGTTTTGACCTTTCCATA+GGG - chr2_1:67689055-67689074 None:intergenic 35.0%
!!! TTTGGTTTTGACCTTTCCAT+AGG - chr2_1:67689056-67689075 None:intergenic 35.0%
GTCAAAACCAAAGATTCCAT+TGG + chr2_1:67689064-67689083 Msa0219820:CDS 35.0%
AGAATCTCCAATGGAATCTT+TGG - chr2_1:67689074-67689093 None:intergenic 35.0%
! ATATCCATGGTCTGAAGTAA+CGG + chr2_1:67689121-67689140 Msa0219820:CDS 35.0%
ATGAGTGTTAATGAAGCTAC+TGG + chr2_1:67689146-67689165 Msa0219820:CDS 35.0%
! AAAAAGGACACACTGACTGA+CGG + chr2_1:67684242-67684261 Msa0219820:five_prime_UTR 40.0%
!! CAGTGTTGGTTCTTCATTCA+TGG - chr2_1:67684304-67684323 None:intergenic 40.0%
ATAAGAGAAGTGGACAGTGT+TGG - chr2_1:67684318-67684337 None:intergenic 40.0%
! GACGACGATTGATACTTTTG+AGG + chr2_1:67684516-67684535 Msa0219820:CDS 40.0%
GATAAAATGGTTACCTCTGC+AGG - chr2_1:67684712-67684731 None:intergenic 40.0%
CTCATATTTCCTGAATTGCG+TGG - chr2_1:67685027-67685046 None:intergenic 40.0%
! TCAGAGGAATATGGTTTGCA+AGG + chr2_1:67685371-67685390 Msa0219820:intron 40.0%
! TATGGTTTGCAAGGATTGAC+AGG + chr2_1:67685380-67685399 Msa0219820:intron 40.0%
TTTGCAAGGATTGACAGGTT+TGG + chr2_1:67685385-67685404 Msa0219820:intron 40.0%
! AGGATGCATGTATGGTGTTT+TGG + chr2_1:67685979-67685998 Msa0219820:intron 40.0%
AGCCAAGAAAAGCTTGCAAT+AGG + chr2_1:67686072-67686091 Msa0219820:intron 40.0%
!! CCGTTTTGGTCATAAAATGC+AGG + chr2_1:67686122-67686141 Msa0219820:intron 40.0%
TCGTATGTTGGAGGAACAAT+TGG - chr2_1:67686150-67686169 None:intergenic 40.0%
ATTGGATCTTCGTATGTTGG+AGG - chr2_1:67686159-67686178 None:intergenic 40.0%
! AGCATTGGATCTTCGTATGT+TGG - chr2_1:67686162-67686181 None:intergenic 40.0%
!! ACTGGGAGCATCACATATAT+AGG - chr2_1:67686198-67686217 None:intergenic 40.0%
AAAACTCGAGAAACAGCTGA+AGG + chr2_1:67686339-67686358 Msa0219820:CDS 40.0%
! ATGGAGTTATGGTTGATGTC+TGG + chr2_1:67686383-67686402 Msa0219820:CDS 40.0%
! AGTTATGGTTGATGTCTGGT+GGG + chr2_1:67686387-67686406 Msa0219820:CDS 40.0%
GTGGGGTATAGTAGAATCAA+AGG + chr2_1:67686405-67686424 Msa0219820:CDS 40.0%
ATCCTGAACCAGTTGAAACA+AGG - chr2_1:67686464-67686483 None:intergenic 40.0%
CATCAATGTGGAGGGAATAT+TGG + chr2_1:67686517-67686536 Msa0219820:CDS 40.0%
CCAACTTCAAGTACCCATTT+AGG - chr2_1:67686565-67686584 None:intergenic 40.0%
CCTAAATGGGTACTTGAAGT+TGG + chr2_1:67686562-67686581 Msa0219820:CDS 40.0%
ACACCAATAGTTCAGGTATC+AGG + chr2_1:67686608-67686627 Msa0219820:CDS 40.0%
! GGAATGTATTTCACTTGGTG+TGG + chr2_1:67686636-67686655 Msa0219820:CDS 40.0%
TAATGGAAGAACTCCCATTC+AGG + chr2_1:67686675-67686694 Msa0219820:CDS 40.0%
ACATCAAAAACCTGGACATC+AGG - chr2_1:67686857-67686876 None:intergenic 40.0%
TCACAGACACATCAAAAACC+TGG - chr2_1:67686865-67686884 None:intergenic 40.0%
CCTAGAGATTCTGCATAAGA+AGG - chr2_1:67687198-67687217 None:intergenic 40.0%
CCTTCTTATGCAGAATCTCT+AGG + chr2_1:67687195-67687214 Msa0219820:CDS 40.0%
TTATGCAGAATCTCTAGGCT+GGG + chr2_1:67687200-67687219 Msa0219820:CDS 40.0%
! TCTTCAAGCTGATTTCGAAG+AGG + chr2_1:67687574-67687593 Msa0219820:CDS 40.0%
TTAGATGACCCTGCATTATC+AGG - chr2_1:67687635-67687654 None:intergenic 40.0%
GGAACTTACCAAACAGAGAA+AGG + chr2_1:67687692-67687711 Msa0219820:CDS 40.0%
! GAAGCCAACAAAGTATTCCT+AGG + chr2_1:67687776-67687795 Msa0219820:CDS 40.0%
GCAACCTAGGAATACTTTGT+TGG - chr2_1:67687783-67687802 None:intergenic 40.0%
CTAACTTCACTTTGCAACCT+AGG - chr2_1:67687796-67687815 None:intergenic 40.0%
! CTTTCGCAACGACTTTTAAG+TGG - chr2_1:67688142-67688161 None:intergenic 40.0%
TTGCGAAAGTAGCCTAAGTT+CGG + chr2_1:67688153-67688172 Msa0219820:intron 40.0%
ATTTGATTACAGGTCCTGAG+TGG + chr2_1:67688681-67688700 Msa0219820:intron 40.0%
TAACCTTCACTGTCATACCT+TGG - chr2_1:67688750-67688769 None:intergenic 40.0%
!!! CCATACATCCTTAGTTTTGG+AGG - chr2_1:67688822-67688841 None:intergenic 40.0%
CCTCCAAAACTAAGGATGTA+TGG + chr2_1:67688819-67688838 Msa0219820:CDS 40.0%
TGATAGTATTTCTCTGGGTC+TGG - chr2_1:67689023-67689042 None:intergenic 40.0%
CTATCATTACACAGTCCCTA+TGG + chr2_1:67689037-67689056 Msa0219820:CDS 40.0%
ATTACACAGTCCCTATGGAA+AGG + chr2_1:67689042-67689061 Msa0219820:CDS 40.0%
GCTTCAAGAAGAATCTCCAA+TGG - chr2_1:67689083-67689102 None:intergenic 40.0%
GTTACTTCAGACCATGGATA+TGG - chr2_1:67689122-67689141 None:intergenic 40.0%
ATATCCGTTACTTCAGACCA+TGG - chr2_1:67689128-67689147 None:intergenic 40.0%
CTATACGTGCAGATAGAGCA+AGG + chr2_1:67684572-67684591 Msa0219820:CDS 45.0%
AGAGCAAGAGGATGCATGTA+TGG + chr2_1:67685971-67685990 Msa0219820:intron 45.0%
!! AGCAGGTGTTGATGGAGTTA+TGG + chr2_1:67686372-67686391 Msa0219820:CDS 45.0%
! GAGTTATGGTTGATGTCTGG+TGG + chr2_1:67686386-67686405 Msa0219820:CDS 45.0%
! GTTATGGTTGATGTCTGGTG+GGG + chr2_1:67686388-67686407 Msa0219820:CDS 45.0%
! GTCCTTGTTTCAACTGGTTC+AGG + chr2_1:67686459-67686478 Msa0219820:CDS 45.0%
CTGCAATTGAGGTTGCAAAG+CGG - chr2_1:67686888-67686907 None:intergenic 45.0%
GATATCTGAGTTCTCCAGCA+GGG - chr2_1:67687176-67687195 None:intergenic 45.0%
CTTATGCAGAATCTCTAGGC+TGG + chr2_1:67687199-67687218 Msa0219820:CDS 45.0%
TTGACTAGGACAGATACCAC+TGG - chr2_1:67687382-67687401 None:intergenic 45.0%
GATACTCTTCAACGTTGCAG+CGG - chr2_1:67687418-67687437 None:intergenic 45.0%
CTCTGTTTGGTAAGTTCCCT+TGG - chr2_1:67687690-67687709 None:intergenic 45.0%
AACAGATTGCTGGAATCCAC+TGG + chr2_1:67688258-67688277 Msa0219820:intron 45.0%
TCGAGAGAACATCCTTGCTA+CGG - chr2_1:67688360-67688379 None:intergenic 45.0%
!!! GCACAACTTTTGGCTTCTTC+TGG - chr2_1:67688434-67688453 None:intergenic 45.0%
! AAGTTCCTGCGCACAACTTT+TGG - chr2_1:67688444-67688463 None:intergenic 45.0%
AGAGAGAACCTTGAAGTTGC+TGG + chr2_1:67688711-67688730 Msa0219820:CDS 45.0%
GAGAGAACCTTGAAGTTGCT+GGG + chr2_1:67688712-67688731 Msa0219820:CDS 45.0%
AGAGAACCTTGAAGTTGCTG+GGG + chr2_1:67688713-67688732 Msa0219820:CDS 45.0%
CTTCCAAGGTATGACAGTGA+AGG + chr2_1:67688744-67688763 Msa0219820:CDS 45.0%
AAAAGGGCCCTCCAAAACTA+AGG + chr2_1:67688811-67688830 Msa0219820:CDS 45.0%
AACCAGTGAAGCCATATCCA+TGG + chr2_1:67689108-67689127 Msa0219820:CDS 45.0%
!! AAAACAAAAAAATAAAATAA+AGG - chr2_1:67685500-67685519 None:intergenic 5.0%
AGCAATTGCTGAACCTGCAG+AGG + chr2_1:67684696-67684715 Msa0219820:CDS 50.0%
!! TGGTTGGTGTTGTGAGTGAG+AGG + chr2_1:67684970-67684989 Msa0219820:intron 50.0%
TGAGAGGATGAAACCACCCA+CGG + chr2_1:67684986-67685005 Msa0219820:intron 50.0%
GACCACTCAAATAACCCCGT+GGG - chr2_1:67685005-67685024 None:intergenic 50.0%
TTGAGTGGTCCACGCAATTC+AGG + chr2_1:67685015-67685034 Msa0219820:intron 50.0%
CGTTTGTAATCACCCCTAGC+TGG - chr2_1:67686297-67686316 None:intergenic 50.0%
AGGGTCCTCAGCAGTATGAT+TGG + chr2_1:67686425-67686444 Msa0219820:CDS 50.0%
GCTGACCAATCATACTGCTG+AGG - chr2_1:67686433-67686452 None:intergenic 50.0%
GGACATCAGGACCTCAAATG+CGG - chr2_1:67686844-67686863 None:intergenic 50.0%
! CATTTGAGGTCCTGATGTCC+AGG + chr2_1:67686844-67686863 Msa0219820:intron 50.0%
GGCTGATGAGACTGCAATTG+AGG - chr2_1:67686899-67686918 None:intergenic 50.0%
GGATATCTGAGTTCTCCAGC+AGG - chr2_1:67687177-67687196 None:intergenic 50.0%
TCTCTAGGCTGGGTATTTCC+TGG + chr2_1:67687210-67687229 Msa0219820:CDS 50.0%
GGCTGGGTATTTCCTGGTAT+TGG + chr2_1:67687216-67687235 Msa0219820:CDS 50.0%
! TGTTTGCTGCTCCATGAGAG+AGG - chr2_1:67687331-67687350 None:intergenic 50.0%
AAGAGCAGGCCATCCTGAAT+GGG + chr2_1:67687604-67687623 Msa0219820:CDS 50.0%
TTATCAGGCAGCTCCCATTC+AGG - chr2_1:67687620-67687639 None:intergenic 50.0%
AGATTGCTGGAATCCACTGG+TGG + chr2_1:67688261-67688280 Msa0219820:intron 50.0%
CTGAAGTAAGCTCTGCAGCA+TGG - chr2_1:67688301-67688320 None:intergenic 50.0%
CATGCTGCAGAGCTTACTTC+AGG + chr2_1:67688299-67688318 Msa0219820:CDS 50.0%
AGAACATCCTTGCTACGGGA+CGG - chr2_1:67688355-67688374 None:intergenic 50.0%
CGAGAGAACATCCTTGCTAC+GGG - chr2_1:67688359-67688378 None:intergenic 50.0%
AGAAGCCAAAAGTTGTGCGC+AGG + chr2_1:67688436-67688455 Msa0219820:CDS 50.0%
TGATTACAGGTCCTGAGTGG+AGG + chr2_1:67688684-67688703 Msa0219820:intron 50.0%
GATTACAGGTCCTGAGTGGA+GGG + chr2_1:67688685-67688704 Msa0219820:intron 50.0%
GACCATGGATATGGCTTCAC+TGG - chr2_1:67689113-67689132 None:intergenic 50.0%
GAGAGGATGAAACCACCCAC+GGG + chr2_1:67684987-67685006 Msa0219820:intron 55.0%
AGAGGATGAAACCACCCACG+GGG + chr2_1:67684988-67685007 Msa0219820:intron 55.0%
CACTCAAATAACCCCGTGGG+TGG - chr2_1:67685002-67685021 None:intergenic 55.0%
CACCCACGGGGTTATTTGAG+TGG + chr2_1:67685000-67685019 Msa0219820:intron 55.0%
GGACCACTCAAATAACCCCG+TGG - chr2_1:67685006-67685025 None:intergenic 55.0%
TTGGTTCCTCCTGCCAGCTA+GGG + chr2_1:67686281-67686300 Msa0219820:intron 55.0%
TGTAATCACCCCTAGCTGGC+AGG - chr2_1:67686293-67686312 None:intergenic 55.0%
!! CTACGAGCAGCAGGTGTTGA+TGG + chr2_1:67686364-67686383 Msa0219820:CDS 55.0%
TGCAAGCGCAACCGCATTTG+AGG + chr2_1:67686830-67686849 Msa0219820:intron 55.0%
!! TCGACTCGGATCCTCTCTCA+TGG + chr2_1:67687317-67687336 Msa0219820:intron 55.0%
GAAGAGGCTGCAACAAGAGC+AGG + chr2_1:67687590-67687609 Msa0219820:CDS 55.0%
CAAGAGCAGGCCATCCTGAA+TGG + chr2_1:67687603-67687622 Msa0219820:CDS 55.0%
! TGGGAGCTGCCTGATAATGC+AGG + chr2_1:67687623-67687642 Msa0219820:CDS 55.0%
! GGGAGCTGCCTGATAATGCA+GGG + chr2_1:67687624-67687643 Msa0219820:CDS 55.0%
ATGGATACCGTCCCGTAGCA+AGG + chr2_1:67688345-67688364 Msa0219820:CDS 55.0%
! TGCGCAGGAACTTGTTCAGC+AGG + chr2_1:67688451-67688470 Msa0219820:CDS 55.0%
! GTTGGTTCCTCCTGCCAGCT+AGG + chr2_1:67686280-67686299 Msa0219820:intron 60.0%
TGGTTCCTCCTGCCAGCTAG+GGG + chr2_1:67686282-67686301 Msa0219820:intron 60.0%
AATCACCCCTAGCTGGCAGG+AGG - chr2_1:67686290-67686309 None:intergenic 60.0%
CTGAAGGAGCTACGAGCAGC+AGG + chr2_1:67686355-67686374 Msa0219820:CDS 60.0%
GAAGTAGGACTTGGCCCTGC+TGG + chr2_1:67687159-67687178 Msa0219820:CDS 60.0%
CAGGCAGCTCCCATTCAGGA+TGG - chr2_1:67687616-67687635 None:intergenic 60.0%
TACAGGTCCTGAGTGGAGGG+TGG + chr2_1:67688688-67688707 Msa0219820:intron 60.0%
TCTCTCTCCACCCTCCACTC+AGG - chr2_1:67688698-67688717 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 67684240 67689389 67684240 ID=Msa0219820;Name=Msa0219820
chr2_1 mRNA 67684240 67689389 67684240 ID=Msa0219820-mRNA-1;Parent=Msa0219820;Name=Msa0219820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=271|0.75|0.88|1|1|1|9|163|632
chr2_1 exon 67684240 67684717 67684240 ID=Msa0219820-mRNA-1:exon:19116;Parent=Msa0219820-mRNA-1
chr2_1 exon 67686144 67686215 67686144 ID=Msa0219820-mRNA-1:exon:19117;Parent=Msa0219820-mRNA-1
chr2_1 exon 67686298 67686696 67686298 ID=Msa0219820-mRNA-1:exon:19118;Parent=Msa0219820-mRNA-1
chr2_1 exon 67686866 67686991 67686866 ID=Msa0219820-mRNA-1:exon:19119;Parent=Msa0219820-mRNA-1
chr2_1 exon 67687084 67687248 67687084 ID=Msa0219820-mRNA-1:exon:19120;Parent=Msa0219820-mRNA-1
chr2_1 exon 67687560 67687823 67687560 ID=Msa0219820-mRNA-1:exon:19121;Parent=Msa0219820-mRNA-1
chr2_1 exon 67688263 67688472 67688263 ID=Msa0219820-mRNA-1:exon:19122;Parent=Msa0219820-mRNA-1
chr2_1 exon 67688693 67688932 67688693 ID=Msa0219820-mRNA-1:exon:19123;Parent=Msa0219820-mRNA-1
chr2_1 exon 67689011 67689389 67689011 ID=Msa0219820-mRNA-1:exon:19124;Parent=Msa0219820-mRNA-1
chr2_1 five_prime_UTR 67684240 67684510 67684240 ID=Msa0219820-mRNA-1:five_prime_utr;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67684511 67684717 67684511 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67686144 67686215 67686144 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67686298 67686696 67686298 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67686866 67686991 67686866 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67687084 67687248 67687084 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67687560 67687823 67687560 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67688263 67688472 67688263 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67688693 67688932 67688693 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 CDS 67689011 67689226 67689011 ID=Msa0219820-mRNA-1:cds;Parent=Msa0219820-mRNA-1
chr2_1 three_prime_UTR 67689227 67689389 67689227 ID=Msa0219820-mRNA-1:three_prime_utr;Parent=Msa0219820-mRNA-1
Gene Sequence

>Msa0219820

ATGAGGACGACGATTGATACTTTTGAGGTTCACGAAAGGTATTTTCAAAGGAGTAACGAAGCTATACGTGCAGATAGAGCAAGGAAGCCAAATTCAAGAACAAAGCAAGCCTTCAAATTTGATAATATTCATCGTGCTTCTGTCAACAAACAACGTTCTGTGTCTTTGTCAGAATTCAAAGCTACAGCAATTGCTGAACCTGCAGAGGCACCAATTGTTCCTCCAACATACGAAGATCCAATGCTTGCAAATTATGTACCTATATATGTGATGCTCCCACTAGGGGTGATTACAAACGACAATGTCTTGGACGATAGAGCAAAACTCGAGAAACAGCTGAAGGAGCTACGAGCAGCAGGTGTTGATGGAGTTATGGTTGATGTCTGGTGGGGTATAGTAGAATCAAAGGGTCCTCAGCAGTATGATTGGTCAGCATATAGGTCCTTGTTTCAACTGGTTCAGGATTGCAAACTTAAGTTACAAGCTATAATGTCATTTCATCAATGTGGAGGGAATATTGGAGATTCTGTTTCCATTCCATTACCTAAATGGGTACTTGAAGTTGGTGAATCAAATCCTGATATCTTTTACACCAATAGTTCAGGTATCAGGAATAAGGAATGTATTTCACTTGGTGTGGATAATAAACCTTTCTTTAATGGAAGAACTCCCATTCAGGTTTTTGATGTGTCTGTGACCGCTTTGCAACCTCAATTGCAGTCTCATCAGCCGTATTTGACAGAATTTTTTTGTAACATTAAGGATTGTGACACAGTCAAGTTACCTGTGTTGAAAAAGTTTATGATGTATAGCGACTATATGAAGAGTTTTAGAGAGAATATGGCAGATTTCTTAGAATCTGAGCTACTGATAGACATTGAAGTAGGACTTGGCCCTGCTGGAGAACTCAGATATCCTTCTTATGCAGAATCTCTAGGCTGGGTATTTCCTGGTATTGGAGAATTTAATTGCTATGACAAATATCTTCAAGCTGATTTCGAAGAGGCTGCAACAAGAGCAGGCCATCCTGAATGGGAGCTGCCTGATAATGCAGGGTCATCTAATGACACACCTGAATCTACAGAATTTTTCAGATCCAAGGGAACTTACCAAACAGAGAAAGGGAAATTTTTTCTTACATGGTATTCTAACAAATTGCTTACACATGGTGATGAAATCTTGGATGAAGCCAACAAAGTATTCCTAGGTTGCAAAGTGAAGTTAGCAGCAAAAATTGCTGGAATCCACTGGTGGTATAAAACTGAAAGCCATGCTGCAGAGCTTACTTCAGGATATTACAACTTAAGTGATAGAGATGGATACCGTCCCGTAGCAAGGATGTTCTCTCGACATAATGCTATATTGAATTTCACATGTCTTGAGATGAGAAATTCGGAGCAACCAGAAGAAGCCAAAAGTTGTGCGCAGGAACTTGTTCAGCAGGTCCTGAGTGGAGGGTGGAGAGAGAACCTTGAAGTTGCTGGGGAAAATGCACTTCCAAGGTATGACAGTGAAGGTTACAACCAAATTCTTCTAAATGCTAGACCAAATGGTGTTAACAAAAAGGGCCCTCCAAAACTAAGGATGTATGGAGTCACATACCTACGTTTGACAGAAGAATTATTCCAGAAACAAAATTTTGATATATTCAAAATCTTTGTGAAAAAGATGCATGCTAATCAGGATCTCTGTCCAGACCCAGAGAAATACTATCATTACACAGTCCCTATGGAAAGGTCAAAACCAAAGATTCCATTGGAGATTCTTCTTGAAGCAACAAAACCAGTGAAGCCATATCCATGGTCTGAAGTAACGGATATGAGTGTTAATGAAGCTACTGGATTTTTCTATGATTTACTAGCAATAATCTTGAGTGTGTTTAGAAGAAACCGAAACTGA

Protein sequence

>Msa0219820

MRTTIDTFEVHERYFQRSNEAIRADRARKPNSRTKQAFKFDNIHRASVNKQRSVSLSEFKATAIAEPAEAPIVPPTYEDPMLANYVPIYVMLPLGVITNDNVLDDRAKLEKQLKELRAAGVDGVMVDVWWGIVESKGPQQYDWSAYRSLFQLVQDCKLKLQAIMSFHQCGGNIGDSVSIPLPKWVLEVGESNPDIFYTNSSGIRNKECISLGVDNKPFFNGRTPIQVFDVSVTALQPQLQSHQPYLTEFFCNIKDCDTVKLPVLKKFMMYSDYMKSFRENMADFLESELLIDIEVGLGPAGELRYPSYAESLGWVFPGIGEFNCYDKYLQADFEEAATRAGHPEWELPDNAGSSNDTPESTEFFRSKGTYQTEKGKFFLTWYSNKLLTHGDEILDEANKVFLGCKVKLAAKIAGIHWWYKTESHAAELTSGYYNLSDRDGYRPVARMFSRHNAILNFTCLEMRNSEQPEEAKSCAQELVQQVLSGGWRENLEVAGENALPRYDSEGYNQILLNARPNGVNKKGPPKLRMYGVTYLRLTEELFQKQNFDIFKIFVKKMHANQDLCPDPEKYYHYTVPMERSKPKIPLEILLEATKPVKPYPWSEVTDMSVNEATGFFYDLLAIILSVFRRNRN*