AlfalfaGEDB | Msa0371620

M. sativa cultivar zhongmu-4 / Msa0371620

KEGG: K21374
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371620	AES71579.1	93.561	497	29	1	1	497	1	494	0.0	975

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371620	sp\|G3FIN8\|UGTK4_MANES	57.563	476	198	3	18	492	5	477	0.0	593

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371620	G7IEP9	93.561	497	29	1	1	497	1	494	0.0	975

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005500	Msa0371620	0.813420	2.583199e-51	-8.615850e-47
Msa0016830	Msa0371620	0.802148	6.437303e-49	-8.615850e-47
Msa0030710	Msa0371620	0.833254	5.926011e-56	-8.615850e-47
Msa0035090	Msa0371620	0.845805	3.228831e-59	-8.615850e-47
Msa0046670	Msa0371620	0.804273	2.338272e-49	-8.615850e-47
Msa0046860	Msa0371620	0.812994	3.203141e-51	-8.615850e-47
Msa0049670	Msa0371620	0.814818	1.269326e-51	-8.615850e-47
Msa0078110	Msa0371620	0.830854	2.323297e-55	-8.615850e-47
Msa0083200	Msa0371620	0.805502	1.294146e-49	-8.615850e-47
Msa0083570	Msa0371620	0.860486	1.998122e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0371620	MtrunA17_Chr3g0118771	93.561	497	29	1	1	497	1	494	975
Msa0371620	MtrunA17_Chr3g0118711	81.705	481	88	0	16	496	5	485	846
Msa0371620	MtrunA17_Chr3g0118751	86.164	477	37	2	21	497	3	450	846
Msa0371620	MtrunA17_Chr3g0118691	81.781	483	87	1	16	497	6	488	845
Msa0371620	MtrunA17_Chr3g0118671	81.092	476	90	0	21	496	3	478	834
Msa0371620	MtrunA17_Chr3g0118701	79.917	483	96	1	16	497	6	488	830
Msa0371620	MtrunA17_Chr3g0118661	66.458	480	160	1	18	497	7	485	651
Msa0371620	MtrunA17_Chr5g0426431	55.414	471	204	5	24	492	12	478	551
Msa0371620	MtrunA17_Chr3g0092641	54.449	472	209	5	23	492	11	478	543
Msa0371620	MtrunA17_Chr3g0118721	83.729	295	48	0	203	497	1	295	535

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371620	AT1G22380.1	51.471	476	229	2	18	492	7	481	0.0	537
Msa0371620	AT1G22360.1	49.789	474	236	2	20	492	6	478	0.0	523
Msa0371620	AT1G22400.1	49.580	476	237	3	19	492	8	482	0.0	517
Msa0371620	AT1G22340.1	48.326	478	246	1	19	495	8	485	0.0	517
Msa0371620	AT1G22370.2	50.420	476	229	3	18	492	7	476	1.02e-178	510
Msa0371620	AT1G22360.2	48.312	474	231	3	20	492	6	466	4.99e-175	501
Msa0371620	AT1G78270.1	46.266	482	255	4	18	497	7	486	7.37e-162	468
Msa0371620	AT1G22370.1	49.342	304	152	2	190	492	4	306	3.10e-102	309
Msa0371620	AT3G46660.1	37.317	477	256	13	25	491	15	458	7.84e-86	272
Msa0371620	AT5G59590.1	34.737	475	274	11	21	491	7	449	2.43e-84	268

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Find 109 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTTGATAAAGTCTCT+TGG	0.482925	3_1:-69857072	Msa0371620:CDS
AAATTAACTATGATGTGAAA+AGG	0.437634	3_1:-69854045	Msa0371620:CDS
AACACATTTGAAGAATTAGA+AGG	0.379838	3_1:-69854613	Msa0371620:CDS
AACCCTAACATATATAGCAT+TGG	0.514549	3_1:-69854562	Msa0371620:CDS
AAGAAAGGCCAACAAATAGT+AGG	0.487158	3_1:+69854124	None:intergenic
AATGAGGCCAGATATAGTAA+TGG	0.584372	3_1:-69854314	Msa0371620:CDS
AATGGTACTAATACAATATG+AGG	0.444708	3_1:+69857192	None:intergenic
AATTAACTATGATGTGAAAA+GGG	0.466340	3_1:-69854044	Msa0371620:CDS
AATTCCAACCACAATGAGTT+AGG	0.409400	3_1:+69854176	None:intergenic
ACAAAATTGTGTGAGATCAT+CGG	0.529236	3_1:-69854647	Msa0371620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTTTGATAAAGTCTCT+TGG	-	chr3_1:69853735-69853754	Msa0371620:three_prime_UTR	30.0%
ATGGTCTCAAATTGAAAATC+AGG	+	chr3_1:69853783-69853802	None:intergenic	30.0%
ATACAAGTAACTGGAATATG+AGG	+	chr3_1:69853930-69853949	None:intergenic	30.0%
TCAGCAATTATACAAGTAAC+TGG	+	chr3_1:69853939-69853958	None:intergenic	30.0%
GTTACTTGTATAATTGCTGA+TGG	-	chr3_1:69853939-69853958	Msa0371620:CDS	30.0%
TATGAATCTAACGTACAGAT+CGG	+	chr3_1:69854332-69854351	None:intergenic	30.0%
TTAGTAGTGAGCCAATAAAT+GGG	-	chr3_1:69854576-69854595	Msa0371620:CDS	30.0%
AGTCAACAAGTAGTTCAAAT+CGG	-	chr3_1:69854626-69854645	Msa0371620:CDS	30.0%
CATTAATGGCCATGATTTAA+TGG	+	chr3_1:69854911-69854930	None:intergenic	30.0%
GACAATTATAAAGGAACAGA+GGG	+	chr3_1:69855131-69855150	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	69853549	69857280	69853549	ID=Msa0371620;Name=Msa0371620
chr3_1	mRNA	69853549	69857280	69853549	ID=Msa0371620-mRNA-1;Parent=Msa0371620;Name=Msa0371620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.5\|1\|1\|1\|2\|322\|497
chr3_1	exon	69853549	69854814	69853549	ID=Msa0371620-mRNA-1:exon:14983;Parent=Msa0371620-mRNA-1
chr3_1	exon	69856731	69857280	69856731	ID=Msa0371620-mRNA-1:exon:14982;Parent=Msa0371620-mRNA-1
chr3_1	CDS	69856731	69857280	69856731	ID=Msa0371620-mRNA-1:cds;Parent=Msa0371620-mRNA-1
chr3_1	CDS	69853871	69854814	69853871	ID=Msa0371620-mRNA-1:cds;Parent=Msa0371620-mRNA-1
chr3_1	three_prime_UTR	69853549	69853870	69853549	ID=Msa0371620-mRNA-1:three_prime_utr;Parent=Msa0371620-mRNA-1

Gene Sequence

>Msa0371620

ATGTCTCAAGAAAAGCAAAATAAAATAGAGTATACTCCTCCACCTCCTAATAGTCATAGCCAAAAGCCTCATATTGTATTAGTACCATTTCCAGCACAAGGTCATGTGAACCCTTTCATGCAACTAGCCAAACTCCTACGTTGTAATGGTTTTCACATAACCTTTGTGAACACTGAATTCAACCACAAACGTTTGATAAAGTCTCTTGGAGCTGACTTTGTTAAGGGTCTACCTGATTTTCAATTTGAGACCATACCTGATGGTTTACCAGAATCAGATAAAGATGCAACACAAGATATTCCAATGTTGTGTGATTCAACTAGGAAAAATTGTTATGCTCCTTTCAAAGAGCTCGTGATTAAGCTCAACACTTCATCACCTCATATTCCAGTTACTTGTATAATTGCTGATGGCAATTATGACTTTGCTGGAAGAGTGGCTAAGGATTTGGGCATTCGAGAGATACAACTTTGGACTGCTTCTACTTGTGGGTTTGTTGGATATTTGCAATTCGAGGAGCTTGTCAAAAGAGGAATTCTTCCATTCAAAGATGAAAATTTTGTTGCCGATGGCACCTTGGATACAAGTTTAGATTGGATCTCTGGAATAAAAGATATCAGATTGAAAGACCTTCCAAGCTTCATCAGAGTCACTGATCTAAATGATATTATGTTTGATTTCTTTTGTGTTGAGCCACAAAATTGTGTGAGATCATCGGCAATCATCATTAACACATTTGAAGAATTAGAAGGTGAATCCCTTGACACCCTTAGGGCTAAAAACCCTAACATATATAGCATTGGCCCACTTCACATGCTTGGTAGGCATTTTCCTGAGAAAGAATACGGTTTTGCAGCAAGTGGTTCAAGTTTTTGGAAAAATGACTCAGAATGCATAAAATGGTTGAGTAAATGGGAACCTTGCTCAGTACTATATATTAATTATGGAAGTATAACTGTTATGACAGATCATCACTTGAAAGAATTTGCTTGGGGAATAGCAAATAGTAAGTTACCATTTTTATGGATAATGAGGCCAGATATAGTAATGGGTGAAGAAACTTCAACTTTGCCACAAGATTTTCTAGATGAAGTCAAGGATAGAGGATACATAACAAGTTGGTGCATGCAAGACCAAGTGCTTGCTCATCCATCAGTTGGAGGGTTCCTAACTCATTGTGGTTGGAATTCTACACTTGAAGCAATTTCTTCAGGTCTGCCTACTATTTGTTGGCCTTTCTTTGCTGAGCAACAAACAAATTGTAGGTATTTATGCAACACTTGGAAAATAGGATTGGAAATTAACTATGATGTGAAAAGGGAAGAGATAACAGAACTTGTGATGGAAATGATGGAAGGAGAAAAAGGAAAAGAGATGAGACAAAACTGCTTAGAGTGGAAGAAGAAAGCTACAGATGCTACTAATGTGGGAGGATCATCATACAATAATTTCTATAATTTAATTAAAGAGCTTCTTCATCACAATGCTATTTGA

Protein sequence

>Msa0371620

MSQEKQNKIEYTPPPPNSHSQKPHIVLVPFPAQGHVNPFMQLAKLLRCNGFHITFVNTEFNHKRLIKSLGADFVKGLPDFQFETIPDGLPESDKDATQDIPMLCDSTRKNCYAPFKELVIKLNTSSPHIPVTCIIADGNYDFAGRVAKDLGIREIQLWTASTCGFVGYLQFEELVKRGILPFKDENFVADGTLDTSLDWISGIKDIRLKDLPSFIRVTDLNDIMFDFFCVEPQNCVRSSAIIINTFEELEGESLDTLRAKNPNIYSIGPLHMLGRHFPEKEYGFAASGSSFWKNDSECIKWLSKWEPCSVLYINYGSITVMTDHHLKEFAWGIANSKLPFLWIMRPDIVMGEETSTLPQDFLDEVKDRGYITSWCMQDQVLAHPSVGGFLTHCGWNSTLEAISSGLPTICWPFFAEQQTNCRYLCNTWKIGLEINYDVKREEITELVMEMMEGEKGKEMRQNCLEWKKKATDATNVGGSSYNNFYNLIKELLHHNAI*