AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048756.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048756.01.T01 MTR_7g056290 77.366 243 52 2 73 315 182 421 1.00e-134 389
MsG0080048756.01.T01 MTR_7g056290 72.464 69 14 1 3 66 7 75 1.15e-23 100
MsG0080048756.01.T01 MTR_7g056390 77.686 242 51 2 73 314 178 416 1.13e-134 389
MsG0080048756.01.T01 MTR_7g056390 77.612 67 13 1 2 66 5 71 7.27e-26 106
MsG0080048756.01.T01 MTR_3g072470 77.869 244 50 3 73 315 178 418 4.65e-132 382
MsG0080048756.01.T01 MTR_3g072470 77.143 70 9 2 2 66 5 72 5.57e-25 104
MsG0080048756.01.T01 MTR_0464s0020 71.774 248 62 4 74 316 186 430 6.37e-119 349
MsG0080048756.01.T01 MTR_0464s0020 64.835 91 20 2 1 79 1 91 3.30e-27 110
MsG0080048756.01.T01 MTR_2g043400 69.106 246 70 4 73 316 178 419 1.83e-112 332
MsG0080048756.01.T01 MTR_2g043400 79.661 59 11 1 9 67 19 76 4.82e-20 90.5
MsG0080048756.01.T01 MTR_7g056003 67.611 247 74 4 73 316 166 409 6.18e-112 330
MsG0080048756.01.T01 MTR_7g056003 80.000 55 11 0 12 66 14 68 5.84e-21 92.8
MsG0080048756.01.T01 MTR_2g043410 67.480 246 73 5 73 316 178 418 5.02e-109 323
MsG0080048756.01.T01 MTR_2g043410 68.000 75 20 3 7 80 16 87 1.26e-20 92.0
MsG0080048756.01.T01 MTR_3g437520 67.811 233 58 6 74 298 186 409 3.60e-100 302
MsG0080048756.01.T01 MTR_3g437520 75.342 73 16 1 9 79 19 91 5.23e-26 107
MsG0080048756.01.T01 MTR_6g042600 55.949 311 100 7 12 310 35 320 3.87e-97 293
MsG0080048756.01.T01 MTR_6g065510 46.264 348 135 12 1 314 1 330 2.74e-83 255
MsG0080048756.01.T01 MTR_7g055830 44.474 371 142 13 1 318 1 360 1.12e-82 254
MsG0080048756.01.T01 MTR_7g055870 49.818 275 118 11 52 316 162 426 4.10e-72 229
MsG0080048756.01.T01 MTR_7g055870 56.061 66 28 1 1 66 1 65 1.23e-12 68.6
MsG0080048756.01.T01 MTR_7g055987 63.102 187 50 4 73 259 165 332 5.78e-72 227
MsG0080048756.01.T01 MTR_7g055987 68.919 74 14 2 1 66 1 73 3.44e-22 95.9
MsG0080048756.01.T01 MTR_7g055930 49.818 275 118 11 52 316 162 426 2.77e-71 227
MsG0080048756.01.T01 MTR_7g055930 56.061 66 28 1 1 66 1 65 7.28e-13 69.3
MsG0080048756.01.T01 MTR_7g055953 49.587 242 105 7 73 314 90 314 8.74e-67 212
MsG0080048756.01.T01 MTR_7g056260 70.000 160 42 4 74 231 162 317 3.99e-66 210
MsG0080048756.01.T01 MTR_7g056260 53.425 73 30 3 1 72 1 70 6.52e-13 68.6
MsG0080048756.01.T01 MTR_2g006360 39.452 365 130 11 2 313 35 361 8.93e-65 208
MsG0080048756.01.T01 MTR_4g129190 46.341 246 115 9 75 314 155 389 1.88e-63 206
MsG0080048756.01.T01 MTR_4g129190 61.111 54 20 1 13 66 6 58 5.25e-11 63.5
MsG0080048756.01.T01 MTR_5g069760 47.521 242 102 8 73 314 153 369 1.01e-62 203
MsG0080048756.01.T01 MTR_5g069760 58.182 55 22 1 12 66 5 58 1.61e-12 67.8
MsG0080048756.01.T01 MTR_7g056173 46.154 247 115 7 75 313 29 265 1.33e-61 199
MsG0080048756.01.T01 MTR_6g055210 44.151 265 113 10 73 315 169 420 1.34e-58 195
MsG0080048756.01.T01 MTR_6g055210 51.613 62 29 1 6 67 15 75 6.40e-11 63.2
MsG0080048756.01.T01 MTR_5g058620 43.182 264 111 10 73 313 33 280 3.73e-58 189
MsG0080048756.01.T01 MTR_1g058870 43.182 264 111 10 73 313 33 280 3.73e-58 189
MsG0080048756.01.T01 MTR_1g442850 46.531 245 102 9 73 314 157 375 1.70e-57 190
MsG0080048756.01.T01 MTR_8g066440 45.703 256 98 9 74 316 176 403 4.18e-57 189
MsG0080048756.01.T01 MTR_8g066440 51.562 64 30 1 3 66 13 75 1.29e-11 65.5
MsG0080048756.01.T01 MTR_7g056503 44.841 252 106 8 73 315 171 398 6.67e-57 189
MsG0080048756.01.T01 MTR_3g464500 44.706 255 112 10 73 316 168 404 9.31e-57 189
MsG0080048756.01.T01 MTR_3g464500 58.621 58 23 1 9 66 23 79 1.53e-11 65.1
MsG0080048756.01.T01 MTR_5g069930 44.215 242 111 8 73 313 157 375 1.23e-56 187
MsG0080048756.01.T01 MTR_5g069930 53.704 54 24 1 13 66 6 58 1.53e-11 65.1
MsG0080048756.01.T01 MTR_5g068040 38.095 378 148 14 11 313 13 379 1.50e-56 187
MsG0080048756.01.T01 MTR_3g464470 44.574 258 108 10 73 316 145 381 2.80e-56 187
MsG0080048756.01.T01 MTR_3g464470 58.621 58 23 1 9 66 3 59 9.52e-12 65.5
MsG0080048756.01.T01 MTR_7g057270 45.020 251 113 9 74 314 178 413 5.59e-56 187
MsG0080048756.01.T01 MTR_7g057270 56.140 57 24 1 12 68 25 80 1.85e-12 67.8
MsG0080048756.01.T01 MTR_3g080370 43.382 272 108 10 74 318 169 421 2.85e-55 186
MsG0080048756.01.T01 MTR_1g088120 42.857 266 112 9 75 316 163 412 3.52e-55 185
MsG0080048756.01.T01 MTR_7g077910 46.063 254 116 7 75 314 89 335 3.74e-55 182
MsG0080048756.01.T01 MTR_7g022670 37.326 359 152 14 5 315 18 351 3.88e-55 183
MsG0080048756.01.T01 MTR_4g019990 43.629 259 108 11 72 315 154 389 6.52e-55 184
MsG0080048756.01.T01 MTR_4g019990 59.649 57 22 1 9 65 2 57 3.57e-11 63.9
MsG0080048756.01.T01 MTR_4g013185 41.985 262 115 10 76 314 178 425 1.32e-54 184
MsG0080048756.01.T01 MTR_7g055977 44.856 243 116 7 74 314 154 380 1.83e-54 182
MsG0080048756.01.T01 MTR_7g055977 61.818 55 20 1 12 66 6 59 8.00e-13 68.9
MsG0080048756.01.T01 MTR_4g030830 42.085 259 115 8 73 315 155 394 4.25e-54 181
MsG0080048756.01.T01 MTR_5g056020 42.007 269 113 10 73 315 170 421 4.68e-54 184
MsG0080048756.01.T01 MTR_4g031020 42.806 278 113 12 60 315 175 428 5.70e-54 182
MsG0080048756.01.T01 MTR_7g056200 46.753 231 103 7 91 316 168 383 1.12e-53 180
MsG0080048756.01.T01 MTR_7g056200 65.385 52 17 1 15 66 25 75 4.16e-13 69.7
MsG0080048756.01.T01 MTR_6g016285 42.647 272 106 10 73 315 168 418 2.30e-53 181
MsG0080048756.01.T01 MTR_6g016285 55.714 70 27 2 2 71 13 78 1.99e-13 70.9
MsG0080048756.01.T01 MTR_4g030980 43.416 281 110 13 57 315 175 428 3.27e-53 180
MsG0080048756.01.T01 MTR_4g030980 53.226 62 28 1 5 66 7 67 7.77e-11 63.2
MsG0080048756.01.T01 MTR_2g047200 41.636 269 122 9 57 315 151 394 1.02e-52 178
MsG0080048756.01.T01 MTR_4g013175 42.366 262 114 10 75 313 177 424 1.53e-52 178
MsG0080048756.01.T01 MTR_7g034310 44.672 244 100 8 73 314 17 227 1.62e-52 172
MsG0080048756.01.T01 MTR_7g056710 43.852 244 106 9 73 313 164 379 1.73e-52 177
MsG0080048756.01.T01 MTR_7g050520 42.623 244 113 8 73 313 169 388 3.24e-52 176
MsG0080048756.01.T01 MTR_7g050520 54.545 66 27 2 4 67 11 75 2.06e-12 67.8
MsG0080048756.01.T01 MTR_7g056717 44.082 245 106 8 73 314 169 385 4.70e-52 176
MsG0080048756.01.T01 MTR_7g050480 42.213 244 114 8 73 313 169 388 4.80e-52 176
MsG0080048756.01.T01 MTR_7g050480 51.515 66 29 2 4 67 11 75 6.08e-11 63.2
MsG0080048756.01.T01 MTR_7g078900 43.726 263 110 9 73 314 177 422 8.99e-52 176
MsG0080048756.01.T01 MTR_7g060940 42.751 269 112 9 58 313 153 392 9.13e-52 176
MsG0080048756.01.T01 MTR_7g060940 57.812 64 25 2 4 66 12 74 1.69e-13 70.9
MsG0080048756.01.T01 MTR_4g034860 44.444 225 99 8 73 292 188 391 1.34e-51 175
MsG0080048756.01.T01 MTR_7g078840 42.366 262 120 9 73 314 181 431 1.55e-51 176
MsG0080048756.01.T01 MTR_7g091630 43.346 263 119 9 73 316 181 432 1.65e-51 176
MsG0080048756.01.T01 MTR_7g091630 42.391 92 45 2 4 95 23 106 4.26e-12 67.0
MsG0080048756.01.T01 MTR_7g060960 35.467 375 147 14 4 313 22 366 7.83e-51 172
MsG0080048756.01.T01 MTR_4g013180 45.022 231 105 9 73 294 155 372 8.43e-51 175
MsG0080048756.01.T01 MTR_4g013180 55.556 63 26 2 5 66 3 64 1.46e-12 68.6
MsG0080048756.01.T01 MTR_7g077970 39.785 279 136 8 57 314 154 421 2.61e-50 172
MsG0080048756.01.T01 MTR_4g030090 43.462 260 115 12 71 315 158 400 2.82e-50 172
MsG0080048756.01.T01 MTR_4g030090 52.239 67 30 2 1 66 1 66 1.43e-11 65.1
MsG0080048756.01.T01 MTR_7g079160 43.478 230 105 6 73 293 188 401 5.69e-50 173
MsG0080048756.01.T01 MTR_7g077990 43.498 223 106 6 94 311 183 390 5.89e-50 171
MsG0080048756.01.T01 MTR_6g088385 37.607 351 142 13 2 318 15 322 3.04e-49 167
MsG0080048756.01.T01 MTR_4g033495 44.082 245 106 9 73 312 184 402 5.61e-49 169
MsG0080048756.01.T01 MTR_7g066850 41.473 258 125 10 73 318 165 408 9.20e-49 169
MsG0080048756.01.T01 MTR_7g009265 38.658 313 142 15 36 316 31 325 1.29e-48 165
MsG0080048756.01.T01 MTR_6g092560 40.154 259 116 10 73 315 161 396 1.41e-48 168
MsG0080048756.01.T01 MTR_7g113500 41.569 255 117 11 73 314 146 381 1.60e-48 167
MsG0080048756.01.T01 MTR_2g047892 39.516 248 124 9 73 315 171 397 1.62e-48 167
MsG0080048756.01.T01 MTR_2g047892 59.677 62 21 2 5 66 17 74 3.90e-12 67.0
MsG0080048756.01.T01 MTR_7g445890 39.922 258 128 9 73 316 140 384 2.34e-48 166
MsG0080048756.01.T01 MTR_7g445890 55.714 70 26 4 1 66 1 69 5.38e-11 63.5
MsG0080048756.01.T01 MTR_3g013470 38.491 265 137 9 38 294 101 347 3.46e-48 166
MsG0080048756.01.T01 MTR_7g052150 40.408 245 125 8 73 313 171 398 5.19e-48 166
MsG0080048756.01.T01 MTR_7g052150 59.375 64 24 2 4 66 12 74 3.72e-15 75.9
MsG0080048756.01.T01 MTR_7g061090 43.145 248 111 10 73 314 182 405 1.02e-47 165
MsG0080048756.01.T01 MTR_7g061090 41.837 98 49 2 1 91 3 99 5.01e-13 69.7
MsG0080048756.01.T01 MTR_5g043160 41.245 257 122 11 73 315 217 458 3.73e-47 165
MsG0080048756.01.T01 MTR_2g010920 41.270 252 122 10 74 314 188 424 4.16e-47 164
MsG0080048756.01.T01 MTR_4g008790 42.667 225 98 8 75 293 215 414 4.98e-47 165
MsG0080048756.01.T01 MTR_7g061050 42.683 246 111 10 74 314 163 383 5.39e-47 163
MsG0080048756.01.T01 MTR_7g061010 41.463 246 111 8 73 313 169 386 7.91e-47 162
MsG0080048756.01.T01 MTR_7g061010 50.746 67 31 2 2 67 10 75 4.47e-11 63.5
MsG0080048756.01.T01 MTR_7g091610 44.041 193 93 5 125 314 66 246 1.11e-46 158
MsG0080048756.01.T01 MTR_7g028660 38.521 257 107 8 74 314 157 378 1.11e-46 162
MsG0080048756.01.T01 MTR_7g028660 53.125 64 26 2 3 66 4 63 4.00e-11 63.5
MsG0080048756.01.T01 MTR_0242s0060 38.996 259 127 8 73 313 171 416 1.29e-46 162
MsG0080048756.01.T01 MTR_0242s0040 38.996 259 127 8 73 313 171 416 1.29e-46 162
MsG0080048756.01.T01 MTR_0128s0010 41.107 253 117 11 73 316 170 399 1.39e-46 162
MsG0080048756.01.T01 MTR_0128s0010 55.072 69 24 2 2 64 4 71 7.39e-13 68.9
MsG0080048756.01.T01 MTR_2g047895 42.424 231 100 9 73 298 93 295 2.21e-46 160
MsG0080048756.01.T01 MTR_6g086920 41.045 268 115 10 73 315 221 470 2.76e-46 163
MsG0080048756.01.T01 MTR_6g086920 50.000 70 33 2 3 71 27 95 6.08e-11 63.5
MsG0080048756.01.T01 MTR_2g010950 40.157 254 122 10 73 314 169 404 2.96e-46 161
MsG0080048756.01.T01 MTR_7g056737 42.667 225 103 7 73 294 169 370 8.73e-46 160
MsG0080048756.01.T01 MTR_7g070880 42.126 254 117 10 73 314 185 420 9.51e-46 160
MsG0080048756.01.T01 MTR_7g070880 55.738 61 23 2 4 64 15 71 4.08e-11 63.9
MsG0080048756.01.T01 MTR_7g061060 43.498 223 100 7 74 292 166 366 1.73e-45 159
MsG0080048756.01.T01 MTR_7g061060 37.589 141 64 6 1 140 1 118 9.73e-11 62.8
MsG0080048756.01.T01 MTR_0707s0020 41.065 263 108 9 73 315 209 444 2.07e-45 160
MsG0080048756.01.T01 MTR_0707s0020 50.000 70 33 2 3 71 15 83 4.74e-11 63.5
MsG0080048756.01.T01 MTR_7g078860 44.541 229 102 9 75 294 166 378 3.09e-45 158
MsG0080048756.01.T01 MTR_7g070830 41.732 254 118 10 73 314 185 420 3.64e-45 159
MsG0080048756.01.T01 MTR_7g070830 52.308 65 29 2 1 64 8 71 6.80e-11 63.2
MsG0080048756.01.T01 MTR_0649s0020 40.562 249 125 8 73 315 157 388 5.12e-45 157
MsG0080048756.01.T01 MTR_7g078040 38.868 265 128 8 73 314 179 432 6.90e-45 158
MsG0080048756.01.T01 MTR_0128s0020 41.152 243 116 8 73 313 175 392 1.53e-44 156
MsG0080048756.01.T01 MTR_0128s0020 53.846 78 31 3 12 89 17 89 3.86e-12 67.0
MsG0080048756.01.T01 MTR_6g017305 40.000 255 127 9 73 316 44 283 2.34e-44 153
MsG0080048756.01.T01 MTR_4g024890 38.554 249 126 8 75 314 154 384 9.40e-44 154
MsG0080048756.01.T01 MTR_4g024890 60.345 58 22 1 9 66 6 62 5.78e-14 72.4
MsG0080048756.01.T01 MTR_6g081280 40.476 252 109 10 74 314 19 240 9.76e-44 150
MsG0080048756.01.T01 MTR_7g077070 38.113 265 126 11 73 314 180 429 1.28e-43 155
MsG0080048756.01.T01 MTR_7g091640 46.821 173 76 5 73 235 182 348 1.86e-43 153
MsG0080048756.01.T01 MTR_7g066840 39.764 254 126 9 73 318 167 401 1.93e-43 154
MsG0080048756.01.T01 MTR_7g066840 50.000 74 26 3 1 64 1 73 3.06e-11 64.3
MsG0080048756.01.T01 MTR_7g066100 38.971 272 126 10 56 314 149 393 2.22e-43 153
MsG0080048756.01.T01 MTR_7g078960 39.313 262 116 10 73 316 52 288 2.56e-43 150
MsG0080048756.01.T01 MTR_7g066030 38.176 296 146 11 29 314 134 402 3.11e-43 153
MsG0080048756.01.T01 MTR_7g066030 45.946 74 31 2 1 66 1 73 4.17e-11 63.9
MsG0080048756.01.T01 MTR_7g056820 40.562 249 113 10 73 313 152 373 5.15e-43 152
MsG0080048756.01.T01 MTR_2g017720 39.914 233 110 8 83 310 89 296 1.20e-42 152
MsG0080048756.01.T01 MTR_4g128320 35.314 303 126 11 7 294 12 259 1.24e-42 148
MsG0080048756.01.T01 MTR_4g011660 38.951 267 119 10 73 316 174 419 2.23e-42 151
MsG0080048756.01.T01 MTR_4g011660 45.263 95 40 4 2 94 11 95 1.86e-13 70.9
MsG0080048756.01.T01 MTR_7g052670 39.179 268 116 10 73 315 180 425 5.85e-42 151
MsG0080048756.01.T01 MTR_5g069950 39.744 234 96 8 13 237 6 203 6.62e-42 145
MsG0080048756.01.T01 MTR_0128s0070 39.506 243 120 8 73 313 178 395 1.17e-41 149
MsG0080048756.01.T01 MTR_0128s0070 64.151 53 18 1 13 65 22 73 2.01e-11 64.7
MsG0080048756.01.T01 MTR_7g078880 35.329 334 146 14 15 311 11 311 1.61e-41 148
MsG0080048756.01.T01 MTR_6g017280 39.286 252 124 11 73 316 159 389 2.03e-41 148
MsG0080048756.01.T01 MTR_4g030790 34.915 295 118 11 1 234 6 287 2.59e-41 147
MsG0080048756.01.T01 MTR_7g056570 39.516 248 122 7 73 318 165 386 3.38e-41 149
MsG0080048756.01.T01 MTR_0097s0030 39.608 255 114 9 73 315 162 388 6.74e-41 147
MsG0080048756.01.T01 MTR_2g047240 39.608 255 114 9 73 315 162 388 6.74e-41 147
MsG0080048756.01.T01 MTR_2g461450 41.850 227 99 7 74 291 149 351 6.98e-41 146
MsG0080048756.01.T01 MTR_7g006360 35.161 310 146 13 15 314 11 275 1.04e-40 144
MsG0080048756.01.T01 MTR_7g061940 37.778 270 123 12 23 284 34 266 1.13e-40 143
MsG0080048756.01.T01 MTR_7g035295 37.500 248 113 6 75 318 174 383 2.14e-40 145
MsG0080048756.01.T01 MTR_7g035295 54.286 70 27 3 1 66 1 69 5.38e-12 66.2
MsG0080048756.01.T01 MTR_7g066000 39.286 252 118 11 73 313 174 401 2.74e-40 145
MsG0080048756.01.T01 MTR_1g015740 30.831 373 135 11 11 313 6 325 3.43e-40 143
MsG0080048756.01.T01 MTR_1g029650 38.521 257 123 9 73 313 165 402 3.98e-40 145
MsG0080048756.01.T01 MTR_2g027820 43.299 194 92 6 124 313 120 299 4.80e-40 142
MsG0080048756.01.T01 MTR_7g056760 39.922 258 113 11 73 315 175 405 5.21e-40 145
MsG0080048756.01.T01 MTR_7g066080 38.267 277 128 10 63 316 160 416 6.62e-40 145
MsG0080048756.01.T01 MTR_7g062100 38.618 246 129 9 73 316 173 398 7.16e-40 144
MsG0080048756.01.T01 MTR_7g062100 62.903 62 19 2 4 65 18 75 7.04e-13 68.9
MsG0080048756.01.T01 MTR_2g047878 40.486 247 95 11 73 315 166 364 8.18e-40 143
MsG0080048756.01.T01 MTR_2g047878 55.072 69 27 3 2 66 8 76 7.74e-13 68.9
MsG0080048756.01.T01 MTR_7g070900 42.241 232 84 8 16 235 184 377 1.61e-39 145
MsG0080048756.01.T01 MTR_7g062060 40.562 249 109 11 74 314 182 399 3.39e-39 142
MsG0080048756.01.T01 MTR_1g071010 37.698 252 122 9 75 316 162 388 3.98e-39 142
MsG0080048756.01.T01 MTR_1g071010 58.182 55 22 1 9 63 11 64 7.78e-11 62.8
MsG0080048756.01.T01 MTR_6g017295 37.786 262 132 9 74 313 96 348 7.42e-39 144
MsG0080048756.01.T01 MTR_1g112010 37.849 251 103 8 73 315 120 325 5.94e-38 137
MsG0080048756.01.T01 MTR_2g010935 40.000 245 101 11 78 314 43 249 7.11e-38 135
MsG0080048756.01.T01 MTR_5g096710 36.759 253 127 9 73 316 172 400 1.27e-37 138
MsG0080048756.01.T01 MTR_5g096710 64.815 54 18 1 12 65 22 74 2.43e-12 67.4
MsG0080048756.01.T01 MTR_7g066060 37.828 267 122 11 66 317 172 409 1.54e-37 140
MsG0080048756.01.T01 MTR_4g030760 38.132 257 107 12 73 315 213 431 3.56e-37 137
MsG0080048756.01.T01 MTR_7g022600 39.464 261 122 12 73 315 180 422 1.62e-36 135
MsG0080048756.01.T01 MTR_7g022600 68.519 54 16 1 13 66 23 75 5.49e-15 75.5
MsG0080048756.01.T01 MTR_2g010900 40.500 200 104 6 73 264 134 326 1.80e-36 135
MsG0080048756.01.T01 MTR_7g056170 38.636 264 107 9 65 316 241 461 2.21e-36 136
MsG0080048756.01.T01 MTR_7g056170 65.000 60 20 1 8 67 70 128 5.32e-16 78.6
MsG0080048756.01.T01 MTR_1g015730 38.911 257 117 11 73 313 161 393 2.05e-35 132
MsG0080048756.01.T01 MTR_4g129160 39.423 208 95 8 73 265 169 360 3.27e-35 131
MsG0080048756.01.T01 MTR_8g030630 40.415 193 91 7 110 298 72 244 4.81e-35 132
MsG0080048756.01.T01 MTR_8g030630 38.191 199 82 8 94 291 282 440 2.36e-30 119
MsG0080048756.01.T01 MTR_2g437110 36.154 260 100 9 75 315 181 393 1.36e-34 132
MsG0080048756.01.T01 MTR_4g006350 34.375 256 131 11 74 313 639 873 1.75e-34 133
MsG0080048756.01.T01 MTR_4g037465 33.962 265 145 10 57 313 150 392 6.47e-34 128
MsG0080048756.01.T01 MTR_4g037465 38.710 93 52 2 9 97 17 108 4.08e-11 63.9
MsG0080048756.01.T01 MTR_7g066010 35.458 251 93 10 73 314 179 369 7.00e-33 125
MsG0080048756.01.T01 MTR_7g066010 55.172 58 25 1 8 65 16 72 3.01e-11 63.9
MsG0080048756.01.T01 MTR_7g445750 41.477 176 83 5 56 220 165 331 4.12e-32 122
MsG0080048756.01.T01 MTR_7g056797 37.302 252 126 9 73 315 175 403 1.08e-31 122
MsG0080048756.01.T01 MTR_7g056023 36.328 256 99 8 10 210 27 273 7.29e-31 117
MsG0080048756.01.T01 MTR_8g101940 37.548 261 116 12 69 315 141 368 1.43e-30 119
MsG0080048756.01.T01 MTR_4g020000 38.819 237 99 12 74 292 114 322 1.85e-30 118
MsG0080048756.01.T01 MTR_7g058630 38.122 181 96 5 136 316 17 181 3.14e-30 113
MsG0080048756.01.T01 MTR_0128s0110 33.178 214 120 7 102 313 10 202 3.91e-30 114
MsG0080048756.01.T01 MTR_4g030110 35.135 259 112 13 63 303 165 385 1.01e-29 117
MsG0080048756.01.T01 MTR_4g030110 55.172 58 25 1 9 66 26 82 4.88e-11 63.5
MsG0080048756.01.T01 MTR_7g070440 36.220 254 117 11 73 313 149 370 5.58e-28 112
MsG0080048756.01.T01 MTR_7g030040 30.747 348 160 13 1 318 44 340 7.00e-28 111
MsG0080048756.01.T01 MTR_4g024910 30.363 303 152 11 31 313 1 264 7.34e-28 110
MsG0080048756.01.T01 MTR_0267s0050 31.855 248 136 8 74 313 160 382 9.42e-28 111
MsG0080048756.01.T01 MTR_2g021150 35.060 251 114 10 73 314 158 368 2.20e-27 110
MsG0080048756.01.T01 MTR_5g011350 44.604 139 62 5 73 210 122 246 3.80e-27 107
MsG0080048756.01.T01 MTR_1g058190 27.344 384 161 15 6 313 28 369 1.08e-26 108
MsG0080048756.01.T01 MTR_2g060555 35.622 233 105 10 73 303 87 276 1.55e-26 106
MsG0080048756.01.T01 MTR_3g013950 31.048 248 138 8 74 313 162 384 4.32e-26 107
MsG0080048756.01.T01 MTR_3g083660 33.200 250 120 11 4 247 20 228 8.09e-26 104
MsG0080048756.01.T01 MTR_3g055000 39.474 152 66 6 163 314 1 126 1.68e-25 99.4
MsG0080048756.01.T01 MTR_2g021155 32.927 246 120 10 9 232 667 889 4.55e-25 106
MsG0080048756.01.T01 MTR_2g021155 31.858 226 103 11 74 287 174 360 1.48e-17 84.0
MsG0080048756.01.T01 MTR_6g017270 47.407 135 52 5 189 316 220 342 5.22e-25 103
MsG0080048756.01.T01 MTR_1g047490 38.122 181 72 5 54 231 163 306 2.48e-24 100
MsG0080048756.01.T01 MTR_7g070937 46.269 134 54 7 73 193 12 140 3.94e-24 97.1
MsG0080048756.01.T01 MTR_7g056793 30.000 270 112 11 49 313 33 230 1.32e-23 97.1
MsG0080048756.01.T01 MTR_2g043420 67.568 74 13 2 1 64 4 76 1.05e-22 92.8
MsG0080048756.01.T01 MTR_4g108820 32.130 277 102 14 11 229 40 288 2.15e-22 95.5
MsG0080048756.01.T01 MTR_7g021580 28.981 314 167 12 12 314 32 300 6.23e-22 94.0
MsG0080048756.01.T01 MTR_7g056373 76.667 60 11 2 12 71 21 77 2.85e-21 87.8
MsG0080048756.01.T01 MTR_2g029990 34.766 256 111 14 74 317 194 405 3.29e-21 93.6
MsG0080048756.01.T01 MTR_2g029990 38.393 112 54 4 16 124 54 153 2.80e-11 64.3
MsG0080048756.01.T01 MTR_1g097370 30.293 307 166 14 10 297 65 342 3.55e-21 94.0
MsG0080048756.01.T01 MTR_3g010870 26.647 334 177 14 2 314 30 316 5.39e-20 89.0
MsG0080048756.01.T01 MTR_7g078940 44.262 122 59 4 75 190 211 329 7.29e-20 89.7
MsG0080048756.01.T01 MTR_2g021190 32.692 260 113 14 74 317 162 375 1.05e-19 89.0
MsG0080048756.01.T01 MTR_3g036430 27.371 369 169 15 9 317 16 345 1.22e-19 88.6
MsG0080048756.01.T01 MTR_7g089830 37.063 143 70 4 130 270 8 132 2.61e-19 83.2
MsG0080048756.01.T01 MTR_0354s0030 45.192 104 49 3 214 316 1 97 1.10e-18 80.1
MsG0080048756.01.T01 MTR_3g010440 30.677 251 129 10 10 232 23 256 1.75e-18 85.1
MsG0080048756.01.T01 MTR_7g060930 50.000 70 33 1 148 217 11 78 8.15e-18 77.0
MsG0080048756.01.T01 MTR_3g096250 29.502 261 136 10 10 232 44 294 9.65e-18 83.2
MsG0080048756.01.T01 MTR_3g030320 33.645 214 105 9 40 247 63 245 1.30e-17 82.0
MsG0080048756.01.T01 MTR_3g011060 29.268 287 129 14 35 297 139 375 2.84e-17 82.0
MsG0080048756.01.T01 MTR_1g097330 27.711 249 126 11 74 307 153 362 4.23e-17 81.6
MsG0080048756.01.T01 MTR_1g097330 68.085 47 14 1 8 54 11 56 8.74e-11 62.8
MsG0080048756.01.T01 MTR_3g024110 26.549 339 167 13 6 272 94 422 6.39e-17 81.3
MsG0080048756.01.T01 MTR_7g066040 39.130 115 55 5 73 174 84 196 9.18e-17 78.6
MsG0080048756.01.T01 MTR_2g078870 28.685 251 129 12 75 317 102 310 9.71e-17 79.7
MsG0080048756.01.T01 MTR_6g048150 40.594 101 52 3 211 311 13 105 1.50e-16 75.5
MsG0080048756.01.T01 MTR_3g055070 35.075 134 61 5 163 296 1 108 2.15e-16 75.9
MsG0080048756.01.T01 MTR_4g053470 27.864 323 121 13 13 268 22 299 3.81e-16 78.2
MsG0080048756.01.T01 MTR_5g022420 28.700 223 116 9 72 288 160 345 4.28e-16 78.6
MsG0080048756.01.T01 MTR_3g010970 28.571 273 136 11 47 314 173 391 4.93e-16 78.6
MsG0080048756.01.T01 MTR_3g007330 30.622 209 100 9 36 232 155 330 6.76e-16 78.2
MsG0080048756.01.T01 MTR_3g007330 67.347 49 15 1 10 58 45 92 8.77e-11 62.8
MsG0080048756.01.T01 MTR_2g046920 32.317 164 83 6 72 229 166 307 8.86e-16 77.4
MsG0080048756.01.T01 MTR_2g046920 73.913 46 11 1 11 56 22 66 1.83e-13 70.9
MsG0080048756.01.T01 MTR_8g062660 28.839 267 128 10 62 317 168 383 1.49e-15 77.8
MsG0080048756.01.T01 MTR_1g097490 26.984 252 123 11 74 314 189 390 1.90e-15 76.6
MsG0080048756.01.T01 MTR_1g097490 35.897 117 52 5 8 124 47 140 3.38e-11 63.9
MsG0080048756.01.T01 MTR_7g062070 34.074 135 73 5 167 296 76 199 2.39e-15 73.9
MsG0080048756.01.T01 MTR_1g050542 33.540 161 72 8 74 223 193 329 2.56e-15 76.3
MsG0080048756.01.T01 MTR_3g007410 28.295 258 123 13 40 278 168 382 2.68e-15 76.3
MsG0080048756.01.T01 MTR_1g094210 32.530 166 85 8 68 229 190 332 3.23e-15 76.3
MsG0080048756.01.T01 MTR_1g094210 58.491 53 21 1 4 56 48 99 4.66e-11 63.5
MsG0080048756.01.T01 MTR_1g094210 32.530 166 85 8 68 229 190 332 3.53e-15 75.9
MsG0080048756.01.T01 MTR_1g094210 45.055 91 33 3 4 89 48 126 4.05e-11 63.9
MsG0080048756.01.T01 MTR_3g024150 30.151 199 119 4 73 271 180 358 4.23e-15 75.5
MsG0080048756.01.T01 MTR_2g046860 29.851 201 115 7 74 270 56 234 4.30e-15 75.1
MsG0080048756.01.T01 MTR_1g054575 32.278 158 77 6 74 223 190 325 4.55e-15 76.3
MsG0080048756.01.T01 MTR_7g056560 34.682 173 65 6 32 183 37 182 5.03e-15 73.2
MsG0080048756.01.T01 MTR_3g036335 28.405 257 128 12 68 314 184 394 5.37e-15 75.5
MsG0080048756.01.T01 MTR_1g055055 25.828 302 136 14 1 234 17 298 7.58e-15 74.7
MsG0080048756.01.T01 MTR_1g097560 29.375 160 84 6 74 229 176 310 7.62e-15 74.7
MsG0080048756.01.T01 MTR_7g445580 36.364 121 60 5 172 292 42 145 8.18e-15 70.9
MsG0080048756.01.T01 MTR_3g007360 27.907 258 124 13 40 278 168 382 8.28e-15 74.7
MsG0080048756.01.T01 MTR_3g011020 31.313 198 102 11 35 229 139 305 9.05e-15 74.7
MsG0080048756.01.T01 MTR_0760s0010 25.886 367 173 17 18 314 52 389 9.11e-15 74.7
MsG0080048756.01.T01 MTR_3g036290 33.810 210 100 11 27 230 118 294 1.31e-14 73.9
MsG0080048756.01.T01 MTR_3g009260 34.756 164 80 8 74 232 180 321 1.60e-14 73.9
MsG0080048756.01.T01 MTR_3g014540 33.333 198 88 11 50 232 150 318 1.64e-14 73.9
MsG0080048756.01.T01 MTR_3g030240 24.934 377 186 16 3 314 33 377 2.24e-14 73.6
MsG0080048756.01.T01 MTR_4g089125 47.674 86 36 3 5 84 4 86 2.26e-14 68.2
MsG0080048756.01.T01 MTR_5g011200 34.545 165 77 9 74 229 163 305 2.42e-14 73.2
MsG0080048756.01.T01 MTR_5g011200 59.184 49 20 0 16 64 20 68 1.91e-12 67.8
MsG0080048756.01.T01 MTR_6g460450 47.887 71 35 2 11 80 26 95 2.58e-14 69.7
MsG0080048756.01.T01 MTR_3g009240 32.353 170 78 7 74 232 176 319 2.66e-14 73.2
MsG0080048756.01.T01 MTR_3g009240 57.812 64 21 3 1 64 27 84 5.16e-11 63.5
MsG0080048756.01.T01 MTR_7g013590 29.811 265 126 12 74 314 175 403 3.21e-14 73.2
MsG0080048756.01.T01 MTR_0044s0300 34.146 164 81 10 74 233 183 323 3.72e-14 72.8
MsG0080048756.01.T01 MTR_7g061100 41.525 118 56 4 73 186 126 234 4.17e-14 72.4
MsG0080048756.01.T01 MTR_4g031770 24.907 269 147 11 68 314 133 368 4.69e-14 72.4
MsG0080048756.01.T01 MTR_6g004660 28.514 249 134 10 74 314 168 380 5.16e-14 72.4
MsG0080048756.01.T01 MTR_3g436150 29.500 200 96 10 50 231 161 333 5.57e-14 72.4
MsG0080048756.01.T01 MTR_7g058660 36.522 115 64 3 198 310 103 210 5.66e-14 70.5
MsG0080048756.01.T01 MTR_1g115185 55.932 59 26 0 3 61 29 87 6.37e-14 72.4
MsG0080048756.01.T01 MTR_2g046830 33.540 161 82 5 74 229 168 308 7.03e-14 72.0
MsG0080048756.01.T01 MTR_2g046830 73.913 46 11 1 11 56 23 67 4.55e-13 69.7
MsG0080048756.01.T01 MTR_2g047832 29.614 233 123 12 74 291 172 378 7.07e-14 72.0
MsG0080048756.01.T01 MTR_2g047832 73.333 45 11 1 11 55 27 70 1.15e-12 68.6
MsG0080048756.01.T01 MTR_3g030250 27.562 283 130 12 10 226 34 307 7.52e-14 72.0
MsG0080048756.01.T01 MTR_2g078900 29.878 164 89 6 74 233 176 317 1.08e-13 71.2
MsG0080048756.01.T01 MTR_3g096270 35.294 204 74 11 10 173 42 227 1.34e-13 70.5
MsG0080048756.01.T01 MTR_0097s0060 41.053 95 48 4 3 97 37 123 1.76e-13 66.6
MsG0080048756.01.T01 MTR_6g065980 26.877 253 132 10 74 317 153 361 2.12e-13 70.5
MsG0080048756.01.T01 MTR_3g007270 31.250 160 76 7 74 223 202 337 3.09e-13 70.1
MsG0080048756.01.T01 MTR_7g055850 56.061 66 28 1 1 66 1 65 3.22e-13 69.3
MsG0080048756.01.T01 MTR_4g024870 63.462 52 18 1 15 66 46 96 3.47e-13 70.1
MsG0080048756.01.T01 MTR_1g054725 27.863 262 121 15 74 314 161 375 4.40e-13 69.7
MsG0080048756.01.T01 MTR_1g054725 59.615 52 21 0 16 67 23 74 7.85e-12 65.9
MsG0080048756.01.T01 MTR_3g013770 33.529 170 77 8 73 229 177 323 4.55e-13 69.7
MsG0080048756.01.T01 MTR_6g007135 29.644 253 128 13 74 314 175 389 4.69e-13 69.7
MsG0080048756.01.T01 MTR_3g006640 28.972 214 102 12 47 235 38 226 4.75e-13 68.9
MsG0080048756.01.T01 MTR_2g046900 28.854 253 128 11 74 314 172 384 5.09e-13 69.3
MsG0080048756.01.T01 MTR_2g046900 67.391 46 14 1 11 56 26 70 3.22e-11 63.9
MsG0080048756.01.T01 MTR_7g007300 36.090 133 63 5 2 134 96 206 5.14e-13 69.7
MsG0080048756.01.T01 MTR_7g007300 28.689 244 125 12 74 314 248 445 5.02e-12 66.6
MsG0080048756.01.T01 MTR_1004s0010 27.711 249 125 11 74 314 158 359 5.36e-13 69.3
MsG0080048756.01.T01 MTR_3g030330 29.249 253 127 12 72 314 161 371 5.56e-13 69.3
MsG0080048756.01.T01 MTR_5g046300 28.958 259 125 14 68 314 139 350 8.48e-13 68.6
MsG0080048756.01.T01 MTR_5g046290 28.958 259 125 14 68 314 139 350 8.48e-13 68.6
MsG0080048756.01.T01 MTR_8g069515 53.731 67 28 2 2 66 3 68 8.98e-13 66.2
MsG0080048756.01.T01 MTR_2g021252 28.125 256 116 12 74 317 188 387 9.99e-13 68.6
MsG0080048756.01.T01 MTR_1g016960 38.739 111 57 4 206 313 152 254 1.01e-12 67.4
MsG0080048756.01.T01 MTR_1g100763 26.070 257 118 10 21 221 6 246 1.51e-12 67.4
MsG0080048756.01.T01 MTR_1g115160 27.459 244 132 10 77 314 162 366 1.52e-12 67.8
MsG0080048756.01.T01 MTR_1g115160 54.839 62 27 1 3 63 11 72 2.72e-11 64.3
MsG0080048756.01.T01 MTR_3g007390 30.178 169 81 7 74 230 3 146 2.57e-12 65.5
MsG0080048756.01.T01 MTR_4g030880 30.415 217 95 9 90 305 46 207 2.65e-12 67.8
MsG0080048756.01.T01 MTR_3g014570 31.373 204 82 11 50 231 150 317 2.71e-12 67.4
MsG0080048756.01.T01 MTR_8g101580 30.588 170 80 9 74 229 185 330 3.26e-12 67.0
MsG0080048756.01.T01 MTR_8g101580 51.389 72 28 3 4 69 31 101 7.90e-11 62.8
MsG0080048756.01.T01 MTR_5g046280 28.571 259 126 14 68 314 42 253 4.71e-12 65.5
MsG0080048756.01.T01 MTR_5g044230 53.448 58 24 1 16 73 51 105 4.74e-12 63.2
MsG0080048756.01.T01 MTR_5g056990 32.927 164 84 8 74 232 36 178 4.77e-12 65.1
MsG0080048756.01.T01 MTR_7g038710 49.254 67 27 2 252 318 92 151 4.99e-12 63.5
MsG0080048756.01.T01 MTR_7g067680 57.143 63 21 2 2 64 43 99 5.15e-12 66.6
MsG0080048756.01.T01 MTR_5g057710 33.537 164 83 7 74 232 191 333 5.36e-12 66.6
MsG0080048756.01.T01 MTR_3g010590 31.138 167 85 7 73 237 181 319 6.05e-12 66.2
MsG0080048756.01.T01 MTR_3g006480 29.126 206 101 9 20 208 39 216 7.25e-12 65.1
MsG0080048756.01.T01 MTR_5g009060 32.402 179 76 9 73 230 189 343 8.50e-12 65.9
MsG0080048756.01.T01 MTR_3g006530 28.426 197 98 7 74 265 195 353 9.61e-12 65.9
MsG0080048756.01.T01 MTR_8g467140 34.270 178 78 11 74 235 171 325 1.07e-11 65.1
MsG0080048756.01.T01 MTR_5g057790 29.146 199 105 8 40 232 165 333 1.07e-11 65.5
MsG0080048756.01.T01 MTR_6g013270 57.895 57 24 0 5 61 21 77 1.19e-11 65.5
MsG0080048756.01.T01 MTR_6g027910 62.000 50 19 0 7 56 3 52 1.29e-11 65.1
MsG0080048756.01.T01 MTR_6g027910 28.856 201 110 7 40 229 132 310 8.10e-11 62.8
MsG0080048756.01.T01 MTR_3g007430 30.357 168 80 7 74 229 186 328 1.31e-11 65.1
MsG0080048756.01.T01 MTR_3g006500 25.368 272 150 12 47 314 147 369 1.32e-11 65.1
MsG0080048756.01.T01 MTR_2g079810 53.333 60 27 1 9 68 2 60 1.35e-11 64.7
MsG0080048756.01.T01 MTR_4g061340 32.402 179 72 9 74 232 169 318 1.45e-11 65.1
MsG0080048756.01.T01 MTR_1g112930 48.780 82 33 3 6 81 21 99 1.66e-11 64.7
MsG0080048756.01.T01 MTR_7g407070 30.097 206 92 11 50 231 162 339 2.60e-11 64.3
MsG0080048756.01.T01 MTR_3g083640 26.667 285 149 11 40 317 174 405 2.62e-11 64.3
MsG0080048756.01.T01 MTR_3g083640 60.000 55 21 1 10 64 52 105 5.65e-11 63.5
MsG0080048756.01.T01 MTR_2g078850 32.164 171 79 10 74 233 173 317 2.84e-11 64.3
MsG0080048756.01.T01 MTR_3g006570 30.460 174 77 9 74 232 164 308 2.84e-11 64.3
MsG0080048756.01.T01 MTR_3g006570 43.158 95 48 3 10 103 18 107 9.76e-11 62.4
MsG0080048756.01.T01 MTR_6g021880 25.342 292 158 10 35 314 138 381 2.98e-11 64.3
MsG0080048756.01.T01 MTR_8g073550 58.621 58 19 2 1 58 22 74 3.16e-11 62.8
MsG0080048756.01.T01 MTR_3g009310 60.714 56 18 2 5 60 37 88 3.31e-11 63.9
MsG0080048756.01.T01 MTR_3g013740 30.097 206 101 10 40 231 168 344 3.93e-11 63.9
MsG0080048756.01.T01 MTR_6g004210 27.586 261 146 11 74 314 178 415 4.03e-11 63.9
MsG0080048756.01.T01 MTR_8g433030 34.320 169 58 7 13 141 40 195 4.34e-11 63.5
MsG0080048756.01.T01 MTR_2g055970 32.544 169 78 9 74 229 350 495 4.77e-11 63.9
MsG0080048756.01.T01 MTR_4g116340 46.835 79 22 2 2 80 31 89 5.08e-11 62.4
MsG0080048756.01.T01 MTR_2g046800 25.882 255 136 12 70 314 181 392 5.12e-11 63.5
MsG0080048756.01.T01 MTR_2g426020 27.234 235 125 12 74 298 162 360 5.52e-11 63.5
MsG0080048756.01.T01 MTR_3g011100 30.918 207 99 11 40 233 354 529 7.30e-11 63.5
MsG0080048756.01.T01 MTR_6g007150 27.734 256 132 12 74 314 120 337 7.65e-11 62.8
MsG0080048756.01.T01 MTR_7g077930 49.206 63 30 2 5 66 11 72 8.09e-11 58.5
MsG0080048756.01.T01 MTR_1g113900 30.208 192 104 8 47 233 15 181 8.16e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATAATTGGAGAGATAAA+AGG 0.189505 contig424end:+12641 MsG0080048756.01.T01:CDS
ACCATGCAATTCTCTATAAT+TGG 0.232341 contig424end:+12629 MsG0080048756.01.T01:CDS
AATATCATTCCATTCATATT+TGG 0.240203 contig424end:-12233 None:intergenic
CATTTCAAACCACACTTATA+AGG 0.270789 contig424end:+12030 MsG0080048756.01.T01:CDS
TTGTGGAAGATGATGGAATT+TGG 0.324079 contig424end:+12427 MsG0080048756.01.T01:CDS
TCAAATGTGTTTGCAAATCA+TGG 0.336699 contig424end:+11050 MsG0080048756.01.T01:CDS
GCCATCTGTTACTGTATTGA+TGG 0.338741 contig424end:+12360 MsG0080048756.01.T01:CDS
AAGTGACAACACACTTATAA+TGG 0.360310 contig424end:+12573 MsG0080048756.01.T01:CDS
GGAAGGATCATGAGAGATTA+GGG 0.363928 contig424end:-11077 None:intergenic
CAAGTGAGACAATGAGAAAT+TGG 0.365174 contig424end:-12264 None:intergenic
GTTTGAGTCATAATAATGTT+TGG 0.374851 contig424end:+12089 MsG0080048756.01.T01:CDS
AGGAAGGATCATGAGAGATT+AGG 0.391932 contig424end:-11078 None:intergenic
AGGAGGAGAGGCAGAGACTT+TGG 0.392956 contig424end:-10971 None:intergenic
TTGAAACTATTGATATTGAT+AGG 0.408570 contig424end:-11141 None:intergenic
CCGACATTTGCTGCCACCTC+AGG 0.411656 contig424end:+12306 MsG0080048756.01.T01:CDS
AGAGACTTTGGTTGAGGAGG+GGG 0.416288 contig424end:-10959 None:intergenic
ATAATGGCAAGCAATCAAAA+AGG 0.417229 contig424end:+12589 MsG0080048756.01.T01:CDS
TTTGACCTGGTCGGCAGAAA+AGG 0.418388 contig424end:-12059 None:intergenic
CAATATCAATAGTTTCAAAC+TGG 0.436005 contig424end:+11146 MsG0080048756.01.T01:CDS
AATTTGGAGTTCAAGAGTCC+TGG 0.455579 contig424end:+12443 MsG0080048756.01.T01:CDS
TCACTTTGAGAAAGGTAGAA+TGG 0.463967 contig424end:-12556 None:intergenic
TAAACTTTCAACATAATCCT+TGG 0.466120 contig424end:-12710 None:intergenic
CTATAATTGGAGAGATAAAA+GGG 0.476762 contig424end:+12642 MsG0080048756.01.T01:CDS
ATGTGAGTGGCACTATTAAC+TGG 0.478470 contig424end:+12191 MsG0080048756.01.T01:CDS
GCAGAGACTTTGGTTGAGGA+GGG 0.480797 contig424end:-10961 None:intergenic
TCAAGGTCAAAAGGAACAAT+GGG 0.481411 contig424end:-12130 None:intergenic
TACACACCATGATTCACATA+TGG 0.483007 contig424end:-12169 None:intergenic
AGAGGCAGAGACTTTGGTTG+AGG 0.486489 contig424end:-10965 None:intergenic
GGACCAGGCTCAAGGTCAAA+AGG 0.488168 contig424end:-12139 None:intergenic
TTATAGCATTAGTAATTCAC+TGG 0.489789 contig424end:+12507 MsG0080048756.01.T01:CDS
GAAATAAGACCAAATATGAA+TGG 0.490181 contig424end:+12224 MsG0080048756.01.T01:CDS
GTGTGTTGTCACTTTGAGAA+AGG 0.500904 contig424end:-12564 None:intergenic
GGCAGAGACTTTGGTTGAGG+AGG 0.501794 contig424end:-10962 None:intergenic
AAGAGAAACTTACTTTGAAG+AGG 0.514861 contig424end:-12740 None:intergenic
AACTATTGATATTGATAGGT+GGG 0.520043 contig424end:-11137 None:intergenic
CTCAAGGTCAAAAGGAACAA+TGG 0.536979 contig424end:-12131 None:intergenic
AATATTGTGGTTTCATACCA+AGG 0.559053 contig424end:+12693 MsG0080048756.01.T01:CDS
TGTCATCCATATGTGAATCA+TGG 0.570035 contig424end:+12163 MsG0080048756.01.T01:CDS
AAACCACACTTATAAGGTGG+TGG 0.570179 contig424end:+12036 MsG0080048756.01.T01:CDS
CGACATTTGCTGCCACCTCA+GGG 0.585531 contig424end:+12307 MsG0080048756.01.T01:CDS
TCCAATTATAGAGAATTGCA+TGG 0.590390 contig424end:-12630 None:intergenic
TTTCCACGATGAGTTCATCA+AGG 0.592910 contig424end:-10991 None:intergenic
CAGAGACTTTGGTTGAGGAG+GGG 0.596265 contig424end:-10960 None:intergenic
AAACTATTGATATTGATAGG+TGG 0.598576 contig424end:-11138 None:intergenic
CCTGAGGTGGCAGCAAATGT+CGG 0.601548 contig424end:-12306 None:intergenic
GATGACAAGGACCAGGCTCA+AGG 0.602098 contig424end:-12147 None:intergenic
ATGAGTTCATCAAGGAGGAG+AGG 0.615971 contig424end:-10983 None:intergenic
TCCATCAATACAGTAACAGA+TGG 0.617559 contig424end:-12361 None:intergenic
TGATTCACATATGGATGACA+AGG 0.620197 contig424end:-12160 None:intergenic
TTCAAACCACACTTATAAGG+TGG 0.622282 contig424end:+12033 MsG0080048756.01.T01:CDS
AGATGCAATTCAGCGAAGGA+AGG 0.625264 contig424end:-11094 None:intergenic
ACTGAAAACTTTGACCTGGT+CGG 0.630887 contig424end:-12068 None:intergenic
GTGAAGATGCAATTCAGCGA+AGG 0.632722 contig424end:-11098 None:intergenic
AGGCCACCACCTTATAAGTG+TGG 0.635847 contig424end:-12039 None:intergenic
ACATATGGATGACAAGGACC+AGG 0.644242 contig424end:-12154 None:intergenic
TCAAACTGAAAACTTTGACC+TGG 0.645509 contig424end:-12072 None:intergenic
TCCACAAAACAAAATGAGTG+TGG 0.647504 contig424end:-12411 None:intergenic
ACTTCAACAAATCCCTGAGG+TGG 0.658089 contig424end:-12319 None:intergenic
CCTCCTTGATGAACTCATCG+TGG 0.661130 contig424end:+10988 MsG0080048756.01.T01:CDS
TGTCTCACTTGATCTCACTA+CGG 0.662709 contig424end:+12276 MsG0080048756.01.T01:CDS
GAGTGGCACTATTAACTGGT+TGG 0.668011 contig424end:+12195 MsG0080048756.01.T01:CDS
AATCATGGTGTGTATGTGAG+TGG 0.686562 contig424end:+12178 MsG0080048756.01.T01:CDS
GTAACAGATGGCTCAACACG+TGG 0.690399 contig424end:-12349 None:intergenic
CCACGATGAGTTCATCAAGG+AGG 0.702689 contig424end:-10988 None:intergenic
ATTGATAGGTGGGTGTTACG+TGG 0.716333 contig424end:-11127 None:intergenic
TCAACTTCAACAAATCCCTG+AGG 0.767994 contig424end:-12322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTAAATTGCATATTT+TGG - contig424end:11479-11498 None:intergenic 10.0%
!! AATATCATTCCATTCATATT+TGG - contig424end:12236-12255 None:intergenic 20.0%
!! AGTAGTTAAAGTTAGTTAAA+TGG - contig424end:11985-12004 None:intergenic 20.0%
!! TTGAAACTATTGATATTGAT+AGG - contig424end:11144-11163 None:intergenic 20.0%
!! TTTCAACAATCAATATAACA+TGG - contig424end:11422-11441 None:intergenic 20.0%
!!! ATTCCTCAAAATTAATTTTC+TGG + contig424end:12471-12490 MsG0080048756.01.T01:CDS 20.0%
!!! ATTTTGACAATGAAATATTG+TGG + contig424end:12680-12699 MsG0080048756.01.T01:CDS 20.0%
!!! CATTTTAAAAAAAATAGTGC+AGG + contig424end:11670-11689 MsG0080048756.01.T01:intron 20.0%
! AAACTATTGATATTGATAGG+TGG - contig424end:11141-11160 None:intergenic 25.0%
! AACACATTATCTCAACAATT+AGG + contig424end:11959-11978 MsG0080048756.01.T01:intron 25.0%
! AACTATTGATATTGATAGGT+GGG - contig424end:11140-11159 None:intergenic 25.0%
! ATATTACTCAATAGGTAGTA+AGG - contig424end:11845-11864 None:intergenic 25.0%
! CAATATCAATAGTTTCAAAC+TGG + contig424end:11146-11165 MsG0080048756.01.T01:CDS 25.0%
! CTATAATTGGAGAGATAAAA+GGG + contig424end:12642-12661 MsG0080048756.01.T01:CDS 25.0%
! GAAATAAGACCAAATATGAA+TGG + contig424end:12224-12243 MsG0080048756.01.T01:CDS 25.0%
! GTTTGAGTCATAATAATGTT+TGG + contig424end:12089-12108 MsG0080048756.01.T01:CDS 25.0%
! TAAACTTTCAACATAATCCT+TGG - contig424end:12713-12732 None:intergenic 25.0%
! TACAATCCATATTACTCAAT+AGG - contig424end:11853-11872 None:intergenic 25.0%
! TCTATAATTGGAGAGATAAA+AGG + contig424end:12641-12660 MsG0080048756.01.T01:CDS 25.0%
! TTACTACCTATTGAGTAATA+TGG + contig424end:11844-11863 MsG0080048756.01.T01:intron 25.0%
! TTATAGCATTAGTAATTCAC+TGG + contig424end:12507-12526 MsG0080048756.01.T01:CDS 25.0%
! TTATCATCAAATGATTGTGA+GGG + contig424end:11535-11554 MsG0080048756.01.T01:intron 25.0%
!! CTATACTAGTAGCTAATTTT+GGG - contig424end:11634-11653 None:intergenic 25.0%
!! GATCCAGAAAATTAATTTTG+AGG - contig424end:12477-12496 None:intergenic 25.0%
!! TCTATACTAGTAGCTAATTT+TGG - contig424end:11635-11654 None:intergenic 25.0%
!!! CTAACTTTAACTACTTTTTC+AGG + contig424end:11990-12009 MsG0080048756.01.T01:intron 25.0%
AAGTGACAACACACTTATAA+TGG + contig424end:12573-12592 MsG0080048756.01.T01:CDS 30.0%
AATAGGTAGTAAGGATCATT+AGG - contig424end:11836-11855 None:intergenic 30.0%
AATATTGTGGTTTCATACCA+AGG + contig424end:12693-12712 MsG0080048756.01.T01:CDS 30.0%
AATTTGCAGTAAGGTTCAAA+CGG - contig424end:11794-11813 None:intergenic 30.0%
ACCATGCAATTCTCTATAAT+TGG + contig424end:12629-12648 MsG0080048756.01.T01:CDS 30.0%
ATAATGGCAAGCAATCAAAA+AGG + contig424end:12589-12608 MsG0080048756.01.T01:CDS 30.0%
ATATTCCTCAATTTGCAGTA+AGG - contig424end:11803-11822 None:intergenic 30.0%
CATTTCAAACCACACTTATA+AGG + contig424end:12030-12049 MsG0080048756.01.T01:CDS 30.0%
CTTATCATCAAATGATTGTG+AGG + contig424end:11534-11553 MsG0080048756.01.T01:intron 30.0%
GTGAGGGACAAAAATTAAAT+AGG + contig424end:11551-11570 MsG0080048756.01.T01:intron 30.0%
TCAAATGTGTTTGCAAATCA+TGG + contig424end:11050-11069 MsG0080048756.01.T01:CDS 30.0%
TCCAATTATAGAGAATTGCA+TGG - contig424end:12633-12652 None:intergenic 30.0%
TTGTTGAGATAATGTGTTTG+TGG - contig424end:11957-11976 None:intergenic 30.0%
! ATGGATTGTATTGATATCGT+TGG + contig424end:11863-11882 MsG0080048756.01.T01:intron 30.0%
!! AATTGCATAAGAGTTTTGAC+AGG - contig424end:11031-11050 None:intergenic 30.0%
!! AATTTTGAGGAATTGAATCC+AGG - contig424end:12464-12483 None:intergenic 30.0%
!!! TACTTTTTCAGGTTAGCATT+TGG + contig424end:12001-12020 MsG0080048756.01.T01:intron 30.0%
!!! TTTTGTTTTGTGGAAGATGA+TGG + contig424end:12420-12439 MsG0080048756.01.T01:CDS 30.0%
AGCAAATGACTTACAGGAAA+GGG - contig424end:11749-11768 None:intergenic 35.0%
ATAGGTGAGATGTTCTTTCA+TGG + contig424end:11569-11588 MsG0080048756.01.T01:intron 35.0%
CAAGTGAGACAATGAGAAAT+TGG - contig424end:12267-12286 None:intergenic 35.0%
CAATAGTTTCAAACTGGTAC+CGG + contig424end:11152-11171 MsG0080048756.01.T01:intron 35.0%
GTAGTAAGGATCATTAGGAA+TGG - contig424end:11831-11850 None:intergenic 35.0%
TACACACCATGATTCACATA+TGG - contig424end:12172-12191 None:intergenic 35.0%
TAGGTGAGATGTTCTTTCAT+GGG + contig424end:11570-11589 MsG0080048756.01.T01:intron 35.0%
TCAAACTGAAAACTTTGACC+TGG - contig424end:12075-12094 None:intergenic 35.0%
TCAAGGTCAAAAGGAACAAT+GGG - contig424end:12133-12152 None:intergenic 35.0%
TCCACAAAACAAAATGAGTG+TGG - contig424end:12414-12433 None:intergenic 35.0%
TCCATCAATACAGTAACAGA+TGG - contig424end:12364-12383 None:intergenic 35.0%
TGATTCACATATGGATGACA+AGG - contig424end:12163-12182 None:intergenic 35.0%
TGTCATCCATATGTGAATCA+TGG + contig424end:12163-12182 MsG0080048756.01.T01:CDS 35.0%
TTCAAACCACACTTATAAGG+TGG + contig424end:12033-12052 MsG0080048756.01.T01:CDS 35.0%
TTGAACCTTACTGCAAATTG+AGG + contig424end:11795-11814 MsG0080048756.01.T01:intron 35.0%
! TCACTTTGAGAAAGGTAGAA+TGG - contig424end:12559-12578 None:intergenic 35.0%
!! TTGTGGAAGATGATGGAATT+TGG + contig424end:12427-12446 MsG0080048756.01.T01:CDS 35.0%
!!! ACCACACTCATTTTGTTTTG+TGG + contig424end:12410-12429 MsG0080048756.01.T01:CDS 35.0%
!!! AGCCAGAAATTTTAAGACGT+GGG + contig424end:11210-11229 MsG0080048756.01.T01:intron 35.0%
AAACCACACTTATAAGGTGG+TGG + contig424end:12036-12055 MsG0080048756.01.T01:CDS 40.0%
AATCATGGTGTGTATGTGAG+TGG + contig424end:12178-12197 MsG0080048756.01.T01:CDS 40.0%
ACTGAAAACTTTGACCTGGT+CGG - contig424end:12071-12090 None:intergenic 40.0%
AGGAAGGATCATGAGAGATT+AGG - contig424end:11081-11100 None:intergenic 40.0%
ATGTGAGTGGCACTATTAAC+TGG + contig424end:12191-12210 MsG0080048756.01.T01:CDS 40.0%
CAAACAGATCAATCCATTGC+AGG - contig424end:11891-11910 None:intergenic 40.0%
CCAAAAACGAAACCAATGTG+TGG - contig424end:11927-11946 None:intergenic 40.0%
CTCAAGGTCAAAAGGAACAA+TGG - contig424end:12134-12153 None:intergenic 40.0%
GAGATAATGTGTTTGTGGCT+GGG - contig424end:11952-11971 None:intergenic 40.0%
GAGCAAATGACTTACAGGAA+AGG - contig424end:11750-11769 None:intergenic 40.0%
GCCATCTGTTACTGTATTGA+TGG + contig424end:12360-12379 MsG0080048756.01.T01:CDS 40.0%
GGAAGGATCATGAGAGATTA+GGG - contig424end:11080-11099 None:intergenic 40.0%
GTAAGGATCATTAGGAATGG+CGG - contig424end:11828-11847 None:intergenic 40.0%
GTGGTTATTCTTCCACACAT+TGG + contig424end:11912-11931 MsG0080048756.01.T01:intron 40.0%
TCAACTTCAACAAATCCCTG+AGG - contig424end:12325-12344 None:intergenic 40.0%
TGAGATAATGTGTTTGTGGC+TGG - contig424end:11953-11972 None:intergenic 40.0%
TGTCTCACTTGATCTCACTA+CGG + contig424end:12276-12295 MsG0080048756.01.T01:CDS 40.0%
TTTCCACGATGAGTTCATCA+AGG - contig424end:10994-11013 None:intergenic 40.0%
! AATTTGGAGTTCAAGAGTCC+TGG + contig424end:12443-12462 MsG0080048756.01.T01:CDS 40.0%
!! AATGGATTGATCTGTTTGCG+TGG + contig424end:11893-11912 MsG0080048756.01.T01:intron 40.0%
!! GCATAAGAGTTTTGACAGGA+AGG - contig424end:11027-11046 None:intergenic 40.0%
!! GTGTGTTGTCACTTTGAGAA+AGG - contig424end:12567-12586 None:intergenic 40.0%
!!! CCACACATTGGTTTCGTTTT+TGG + contig424end:11924-11943 MsG0080048756.01.T01:intron 40.0%
!!! CCAGAAATTTTAAGACGTGG+GGG + contig424end:11212-11231 MsG0080048756.01.T01:intron 40.0%
!!! GAGCCAGAAATTTTAAGACG+TGG + contig424end:11209-11228 MsG0080048756.01.T01:intron 40.0%
!!! GCCAGAAATTTTAAGACGTG+GGG + contig424end:11211-11230 MsG0080048756.01.T01:intron 40.0%
ACATATGGATGACAAGGACC+AGG - contig424end:12157-12176 None:intergenic 45.0%
ACTTCAACAAATCCCTGAGG+TGG - contig424end:12322-12341 None:intergenic 45.0%
AGATGCAATTCAGCGAAGGA+AGG - contig424end:11097-11116 None:intergenic 45.0%
ATGAGTTCATCAAGGAGGAG+AGG - contig424end:10986-11005 None:intergenic 45.0%
CCCCCACGTCTTAAAATTTC+TGG - contig424end:11215-11234 None:intergenic 45.0%
GAGTGGCACTATTAACTGGT+TGG + contig424end:12195-12214 MsG0080048756.01.T01:CDS 45.0%
GTGAAGATGCAATTCAGCGA+AGG - contig424end:11101-11120 None:intergenic 45.0%
TCAAACGGTGTGATGCTTGA+TGG - contig424end:11779-11798 None:intergenic 45.0%
TCCTGTAAGTCATTTGCTCG+AGG + contig424end:11751-11770 MsG0080048756.01.T01:intron 45.0%
! ATTGATAGGTGGGTGTTACG+TGG - contig424end:11130-11149 None:intergenic 45.0%
!! GATATCGTTGGTTCCTGCAA+TGG + contig424end:11875-11894 MsG0080048756.01.T01:intron 45.0%
!! TTTTGACAGGAAGGCGTGAT+AGG - contig424end:11018-11037 None:intergenic 45.0%
AGAGACTTTGGTTGAGGAGG+GGG - contig424end:10962-10981 None:intergenic 50.0%
AGAGGCAGAGACTTTGGTTG+AGG - contig424end:10968-10987 None:intergenic 50.0%
AGGCCACCACCTTATAAGTG+TGG - contig424end:12042-12061 None:intergenic 50.0%
CAGAGACTTTGGTTGAGGAG+GGG - contig424end:10963-10982 None:intergenic 50.0%
CCACGATGAGTTCATCAAGG+AGG - contig424end:10991-11010 None:intergenic 50.0%
CCTCCTTGATGAACTCATCG+TGG + contig424end:10988-11007 MsG0080048756.01.T01:CDS 50.0%
CGGACACGTCATCAAACATC+CGG - contig424end:11174-11193 None:intergenic 50.0%
GCAGAGACTTTGGTTGAGGA+GGG - contig424end:10964-10983 None:intergenic 50.0%
GCCTCGAGCAAATGACTTAC+AGG - contig424end:11755-11774 None:intergenic 50.0%
GTAACAGATGGCTCAACACG+TGG - contig424end:12352-12371 None:intergenic 50.0%
TTTGACCTGGTCGGCAGAAA+AGG - contig424end:12062-12081 None:intergenic 50.0%
! GTTCCTTTTGACCTTGAGCC+TGG + contig424end:12136-12155 MsG0080048756.01.T01:CDS 50.0%
ACGACCCTGATATCCAGTGG+CGG - contig424end:11725-11744 None:intergenic 55.0%
AGCCACTCACAAGACTCTGG+AGG - contig424end:11702-11721 None:intergenic 55.0%
AGGAGGAGAGGCAGAGACTT+TGG - contig424end:10974-10993 None:intergenic 55.0%
CCTGAGGTGGCAGCAAATGT+CGG - contig424end:12309-12328 None:intergenic 55.0%
GACGTGTCCGATATCAGCAG+TGG + contig424end:11184-11203 MsG0080048756.01.T01:intron 55.0%
GATGACAAGGACCAGGCTCA+AGG - contig424end:12150-12169 None:intergenic 55.0%
GGACCAGGCTCAAGGTCAAA+AGG - contig424end:12142-12161 None:intergenic 55.0%
GGCAGAGACTTTGGTTGAGG+AGG - contig424end:10965-10984 None:intergenic 55.0%
GGTACGACCCTGATATCCAG+TGG - contig424end:11728-11747 None:intergenic 55.0%
GTGTCCGATATCAGCAGTGG+CGG + contig424end:11187-11206 MsG0080048756.01.T01:intron 55.0%
! AGCCTCCAGAGTCTTGTGAG+TGG + contig424end:11697-11716 MsG0080048756.01.T01:intron 55.0%
! CGACATTTGCTGCCACCTCA+GGG + contig424end:12307-12326 MsG0080048756.01.T01:CDS 55.0%
CGGAGCCACTCACAAGACTC+TGG - contig424end:11705-11724 None:intergenic 60.0%
GGCTCCGCCACTGCTGATAT+CGG - contig424end:11194-11213 None:intergenic 60.0%
GGCTCCGCCACTGGATATCA+GGG + contig424end:11718-11737 MsG0080048756.01.T01:intron 60.0%
TGGCTCCGCCACTGGATATC+AGG + contig424end:11717-11736 MsG0080048756.01.T01:intron 60.0%
! CCGACATTTGCTGCCACCTC+AGG + contig424end:12306-12325 MsG0080048756.01.T01:CDS 60.0%
CTTGTGAGTGGCTCCGCCAC+TGG + contig424end:11709-11728 MsG0080048756.01.T01:intron 65.0%
! GGTGGCCTTTTCTGCCGACC+AGG + contig424end:12054-12073 MsG0080048756.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
contig424end gene 10953 12753 10953 ID=MsG0080048756.01;Name=MsG0080048756.01
contig424end mRNA 10953 12753 10953 ID=MsG0080048756.01.T01;Parent=MsG0080048756.01;Name=MsG0080048756.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|318
contig424end exon 10953 11167 10953 ID=MsG0080048756.01.T01:exon:11296;Parent=MsG0080048756.01.T01
contig424end exon 12012 12753 12012 ID=MsG0080048756.01.T01:exon:11295;Parent=MsG0080048756.01.T01
contig424end CDS 10953 11167 10953 ID=MsG0080048756.01.T01:cds;Parent=MsG0080048756.01.T01
contig424end CDS 12012 12753 12012 ID=MsG0080048756.01.T01:cds;Parent=MsG0080048756.01.T01
Gene Sequence

>MsG0080048756.01.T01

ATGAATCCCCCTCCTCAACCAAAGTCTCTGCCTCTCCTCCTTGATGAACTCATCGTGGAAATCCTATCACGCCTTCCTGTCAAAACTCTTATGCAATTCAAATGTGTTTGCAAATCATGGAATACCCTAATCTCTCATGATCCTTCCTTCGCTGAATTGCATCTTCACAGATCGCCACGTAACACCCACCTATCAATATCAATAGTTTCAAACTGGTTAGCATTTGGATATGACATTTCAAACCACACTTATAAGGTGGTGGCCTTTTCTGCCGACCAGGTCAAAGTTTTCAGTTTGAGTCATAATAATGTTTGGAGAGATATTTCAACTTTTCCCATTGTTCCTTTTGACCTTGAGCCTGGTCCTTGTCATCCATATGTGAATCATGGTGTGTATGTGAGTGGCACTATTAACTGGTTGGCTATTCGAAATAAGACCAAATATGAATGGAATGATATTTCAATCGACCAATTTCTCATTGTCTCACTTGATCTCACTACGGAGACATACCGACATTTGCTGCCACCTCAGGGATTTGTTGAAGTTGAAGTACCACGTGTTGAGCCATCTGTTACTGTATTGATGGACTGTCTCTGTTTTTCTCACTGTTTCAACCACACTCATTTTGTTTTGTGGAAGATGATGGAATTTGGAGTTCAAGAGTCCTGGATTCAATTCCTCAAAATTAATTTTCTGGATCTTCAAATTGATTATAGCATTAGTAATTCACTGGAATATAGTTGTCAATTGTTCTTGTTTCCATTCTACCTTTCTCAAAGTGACAACACACTTATAATGGCAAGCAATCAAAAAGGCTATGATTGTCATGACAACCATGCAATTCTCTATAATTGGAGAGATAAAAGGGTTGAGCAAACTTCATATTTTGACAATGAAATATTGTGGTTTCATACCAAGGATTATGTTGAAAGTTTAGTTTCAACCTCTTCAAAGTAA
Protein sequence

>MsG0080048756.01.T01

MNPPPQPKSLPLLLDELIVEILSRLPVKTLMQFKCVCKSWNTLISHDPSFAELHLHRSPRNTHLSISIVSNWLAFGYDISNHTYKVVAFSADQVKVFSLSHNNVWRDISTFPIVPFDLEPGPCHPYVNHGVYVSGTINWLAIRNKTKYEWNDISIDQFLIVSLDLTTETYRHLLPPQGFVEVEVPRVEPSVTVLMDCLCFSHCFNHTHFVLWKMMEFGVQESWIQFLKINFLDLQIDYSISNSLEYSCQLFLFPFYLSQSDNTLIMASNQKGYDCHDNHAILYNWRDKRVEQTSYFDNEILWFHTKDYVESLVSTSSK*