Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033704.01.T01 | KEH15716.1 | 83.129 | 326 | 39 | 5 | 1 | 324 | 87 | 398 | 0 | 539 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033704.01.T01 | Q9SFC7 | 25.664 | 339 | 198 | 9 | 45 | 353 | 93 | 407 | 2.21E-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033704.01.T01 | A0A072TEQ8 | 83.129 | 326 | 39 | 5 | 1 | 324 | 87 | 398 | 0.0 | 539 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033704.01.T01 | MTR_0627s0010 | 83.129 | 326 | 39 | 5 | 1 | 324 | 87 | 398 | 0.0 | 539 |
| MsG0680033704.01.T01 | MTR_6g046320 | 87.500 | 296 | 29 | 3 | 1 | 290 | 88 | 381 | 0.0 | 524 |
| MsG0680033704.01.T01 | MTR_5g021880 | 61.722 | 418 | 119 | 8 | 1 | 391 | 88 | 491 | 6.16e-172 | 489 |
| MsG0680033704.01.T01 | MTR_5g021860 | 63.614 | 415 | 107 | 9 | 1 | 389 | 79 | 475 | 3.47e-169 | 483 |
| MsG0680033704.01.T01 | MTR_4g027370 | 63.570 | 409 | 105 | 9 | 1 | 383 | 79 | 469 | 2.08e-167 | 479 |
| MsG0680033704.01.T01 | MTR_5g021880 | 61.071 | 411 | 117 | 9 | 1 | 382 | 88 | 484 | 5.12e-163 | 467 |
| MsG0680033704.01.T01 | MTR_5g021860 | 63.910 | 399 | 100 | 9 | 1 | 373 | 79 | 459 | 7.38e-163 | 465 |
| MsG0680033704.01.T01 | MTR_5g021880 | 61.500 | 400 | 113 | 8 | 1 | 373 | 88 | 473 | 4.12e-162 | 464 |
| MsG0680033704.01.T01 | MTR_5g022900 | 60.570 | 421 | 119 | 10 | 1 | 393 | 81 | 482 | 5.15e-159 | 456 |
| MsG0680033704.01.T01 | MTR_5g022040 | 55.714 | 420 | 141 | 8 | 1 | 393 | 89 | 490 | 4.44e-145 | 421 |
| MsG0680033704.01.T01 | MTR_7g117100 | 57.868 | 394 | 91 | 9 | 14 | 383 | 1 | 343 | 5.46e-144 | 414 |
| MsG0680033704.01.T01 | MTR_5g007940 | 56.459 | 418 | 112 | 11 | 1 | 393 | 76 | 448 | 2.94e-143 | 415 |
| MsG0680033704.01.T01 | MTR_5g022045 | 56.608 | 401 | 141 | 9 | 1 | 393 | 84 | 459 | 1.99e-140 | 408 |
| MsG0680033704.01.T01 | MTR_7g090810 | 58.901 | 382 | 125 | 10 | 1 | 372 | 69 | 428 | 3.59e-134 | 391 |
| MsG0680033704.01.T01 | MTR_5g010610 | 56.777 | 391 | 125 | 13 | 10 | 384 | 92 | 454 | 3.70e-123 | 367 |
| MsG0680033704.01.T01 | MTR_7g090810 | 61.538 | 312 | 95 | 7 | 88 | 393 | 13 | 305 | 7.64e-121 | 352 |
| MsG0680033704.01.T01 | MTR_5g010550 | 53.904 | 397 | 148 | 10 | 10 | 393 | 102 | 476 | 1.05e-117 | 350 |
| MsG0680033704.01.T01 | MTR_5g010550 | 53.904 | 397 | 148 | 10 | 10 | 393 | 116 | 490 | 1.30e-117 | 351 |
| MsG0680033704.01.T01 | MTR_5g010560 | 53.266 | 398 | 145 | 10 | 10 | 393 | 102 | 472 | 7.26e-117 | 348 |
| MsG0680033704.01.T01 | MTR_7g117100 | 63.322 | 289 | 68 | 7 | 14 | 278 | 1 | 275 | 2.74e-115 | 337 |
| MsG0680033704.01.T01 | MTR_5g022090 | 50.656 | 381 | 117 | 12 | 1 | 373 | 83 | 400 | 3.45e-107 | 321 |
| MsG0680033704.01.T01 | MTR_5g027370 | 47.870 | 399 | 166 | 14 | 1 | 392 | 78 | 441 | 2.64e-106 | 320 |
| MsG0680033704.01.T01 | MTR_5g027330 | 47.870 | 399 | 166 | 14 | 1 | 392 | 89 | 452 | 4.79e-106 | 320 |
| MsG0680033704.01.T01 | MTR_5g022750 | 46.851 | 397 | 144 | 10 | 1 | 393 | 68 | 401 | 1.79e-99 | 302 |
| MsG0680033704.01.T01 | MTR_5g010660 | 49.733 | 374 | 106 | 13 | 22 | 373 | 76 | 389 | 1.39e-95 | 293 |
| MsG0680033704.01.T01 | MTR_5g021920 | 70.930 | 172 | 40 | 3 | 8 | 169 | 96 | 267 | 5.94e-78 | 242 |
| MsG0680033704.01.T01 | MTR_3g436150 | 27.203 | 261 | 161 | 7 | 65 | 318 | 123 | 361 | 4.50e-17 | 82.8 |
| MsG0680033704.01.T01 | MTR_4g055060 | 27.165 | 254 | 148 | 8 | 70 | 315 | 124 | 348 | 1.46e-16 | 80.9 |
| MsG0680033704.01.T01 | MTR_3g007360 | 28.629 | 248 | 145 | 11 | 72 | 313 | 144 | 365 | 3.42e-16 | 80.1 |
| MsG0680033704.01.T01 | MTR_4g134560 | 32.000 | 225 | 114 | 12 | 70 | 286 | 170 | 363 | 4.05e-16 | 80.1 |
| MsG0680033704.01.T01 | MTR_3g024110 | 29.911 | 224 | 113 | 9 | 72 | 291 | 200 | 383 | 8.35e-16 | 79.0 |
| MsG0680033704.01.T01 | MTR_3g007410 | 28.514 | 249 | 147 | 10 | 72 | 315 | 144 | 366 | 8.35e-16 | 79.0 |
| MsG0680033704.01.T01 | MTR_3g011100 | 26.296 | 270 | 156 | 10 | 71 | 326 | 332 | 572 | 3.57e-15 | 77.8 |
| MsG0680033704.01.T01 | MTR_4g061340 | 27.059 | 255 | 143 | 10 | 70 | 315 | 116 | 336 | 4.57e-15 | 76.6 |
| MsG0680033704.01.T01 | MTR_4g133170 | 24.068 | 295 | 194 | 9 | 49 | 338 | 70 | 339 | 1.00e-14 | 75.5 |
| MsG0680033704.01.T01 | MTR_3g006670 | 29.694 | 229 | 128 | 10 | 62 | 285 | 136 | 336 | 2.92e-14 | 74.3 |
| MsG0680033704.01.T01 | MTR_3g014540 | 28.235 | 255 | 152 | 10 | 69 | 319 | 119 | 346 | 5.98e-14 | 73.2 |
| MsG0680033704.01.T01 | MTR_3g014570 | 26.102 | 295 | 175 | 11 | 69 | 355 | 119 | 378 | 1.24e-13 | 72.0 |
| MsG0680033704.01.T01 | MTR_3g024040 | 27.306 | 271 | 157 | 12 | 66 | 335 | 116 | 347 | 2.02e-13 | 71.6 |
| MsG0680033704.01.T01 | MTR_3g013740 | 29.134 | 254 | 139 | 12 | 70 | 313 | 146 | 368 | 4.62e-13 | 70.5 |
| MsG0680033704.01.T01 | MTR_3g011020 | 27.273 | 286 | 149 | 11 | 41 | 315 | 96 | 333 | 1.23e-12 | 68.9 |
| MsG0680033704.01.T01 | MTR_3g083640 | 27.556 | 225 | 125 | 8 | 74 | 296 | 157 | 345 | 1.35e-12 | 68.9 |
| MsG0680033704.01.T01 | MTR_2g031720 | 24.820 | 278 | 179 | 12 | 57 | 325 | 80 | 336 | 2.72e-12 | 68.2 |
| MsG0680033704.01.T01 | MTR_3g030320 | 27.854 | 219 | 118 | 10 | 72 | 285 | 44 | 227 | 9.48e-12 | 65.9 |
| MsG0680033704.01.T01 | MTR_3g036290 | 29.515 | 227 | 118 | 9 | 67 | 291 | 113 | 299 | 1.39e-11 | 65.9 |
| MsG0680033704.01.T01 | MTR_3g009300 | 26.730 | 318 | 189 | 14 | 32 | 334 | 48 | 336 | 1.59e-11 | 65.5 |
| MsG0680033704.01.T01 | MTR_3g011120 | 25.413 | 303 | 184 | 12 | 46 | 335 | 88 | 361 | 1.99e-11 | 65.5 |
| MsG0680033704.01.T01 | MTR_5g007610 | 29.437 | 231 | 120 | 12 | 71 | 285 | 133 | 336 | 2.40e-11 | 65.5 |
| MsG0680033704.01.T01 | MTR_5g046300 | 26.190 | 294 | 154 | 13 | 4 | 285 | 41 | 283 | 3.22e-11 | 64.7 |
| MsG0680033704.01.T01 | MTR_5g046290 | 26.190 | 294 | 154 | 13 | 4 | 285 | 41 | 283 | 3.22e-11 | 64.7 |
| MsG0680033704.01.T01 | MTR_4g070550 | 25.287 | 261 | 152 | 11 | 57 | 294 | 85 | 325 | 4.12e-11 | 64.7 |
| MsG0680033704.01.T01 | MTR_6g048120 | 26.549 | 226 | 135 | 7 | 65 | 285 | 131 | 330 | 4.69e-11 | 64.3 |
| MsG0680033704.01.T01 | MTR_6g065980 | 26.977 | 215 | 119 | 8 | 72 | 285 | 109 | 286 | 5.41e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033704.01.T01 | AT3G07870 | 25.664 | 339 | 198 | 9 | 45 | 353 | 93 | 407 | 2.25e-20 | 92.8 |
Find 90 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGCCATATTTATCAATT+TGG | 0.231426 | 6:+71970687 | None:intergenic |
| TCTGGGTTGCCAGCAATATA+AGG | 0.257557 | 6:+71971208 | None:intergenic |
| AATATAAGGTAATACATATT+TGG | 0.267747 | 6:-71970982 | MsG0680033704.01.T01:CDS |
| CGAATTCATGGGTATTCTTC+AGG | 0.268267 | 6:-71970377 | MsG0680033704.01.T01:CDS |
| TATTAGCATGGGAGAATTAA+AGG | 0.273494 | 6:-71970648 | MsG0680033704.01.T01:CDS |
| CTCAATATTGTATCCTTTCA+TGG | 0.275852 | 6:+71970304 | None:intergenic |
| TCCTAAAACTAATGAATATA+AGG | 0.290130 | 6:-71970996 | MsG0680033704.01.T01:CDS |
| CAGGACCAAATTGATAAATA+TGG | 0.301323 | 6:-71970692 | MsG0680033704.01.T01:CDS |
| TACTATGAGCCTAATAAATA+TGG | 0.315586 | 6:-71970413 | MsG0680033704.01.T01:CDS |
| AGTGACACGGCTCGTGTAAT+AGG | 0.335884 | 6:-71971043 | MsG0680033704.01.T01:CDS |
| CCCTTGACTCCATATTTATT+AGG | 0.338521 | 6:+71970404 | None:intergenic |
| ATAGGACAAGAAGCTGGTTT+TGG | 0.341685 | 6:-71971025 | MsG0680033704.01.T01:CDS |
| GATAAATATGGCAATTTGTC+TGG | 0.346851 | 6:-71970680 | MsG0680033704.01.T01:CDS |
| TGTTACATCATTCATATGAT+TGG | 0.357186 | 6:-71970442 | MsG0680033704.01.T01:CDS |
| AATGGGTTGCAGATCACTAT+AGG | 0.364285 | 6:+71971115 | None:intergenic |
| CTATCAATAGCAAACGCAAC+TGG | 0.372562 | 6:+71970722 | None:intergenic |
| GTGTGGAAAGTTTAAATTGC+GGG | 0.374677 | 6:-71969708 | MsG0680033704.01.T01:CDS |
| ATATTAAACTTATCACGATC+TGG | 0.382696 | 6:+71971190 | None:intergenic |
| ACTATAGGGTTTCCAGTAGT+TGG | 0.383949 | 6:+71971130 | None:intergenic |
| TCCAAGCACCCTTATATTGC+TGG | 0.394885 | 6:-71971217 | MsG0680033704.01.T01:CDS |
| ATGTGGGTTATGAATGAATA+TGG | 0.396610 | 6:-71970581 | MsG0680033704.01.T01:CDS |
| CAAACATAGCAAGCCATTAC+AGG | 0.408184 | 6:+71971159 | None:intergenic |
| TCCAAGTCTAATCTCATTGA+AGG | 0.442216 | 6:-71970330 | MsG0680033704.01.T01:CDS |
| AATATTGTGAATTCCTGTAA+TGG | 0.443074 | 6:-71971172 | MsG0680033704.01.T01:CDS |
| GTGTGAATGGTGCACTTCAT+TGG | 0.443289 | 6:-71970823 | MsG0680033704.01.T01:CDS |
| TGCTATTGATAGTTATGTCC+AGG | 0.446392 | 6:-71970711 | MsG0680033704.01.T01:CDS |
| AGACATGAAAATGAAATTTG+AGG | 0.447128 | 6:+71970860 | None:intergenic |
| CGAAGAGGAAGCCTGAATAT+AGG | 0.448133 | 6:+71971274 | None:intergenic |
| GCATGACGCCACGTCGGTAA+AGG | 0.448671 | 6:+71970509 | None:intergenic |
| ATTAGCATGGGAGAATTAAA+GGG | 0.449576 | 6:-71970647 | MsG0680033704.01.T01:CDS |
| AATTAGATTCTTACCTTGAG+TGG | 0.450866 | 6:+71970270 | None:intergenic |
| TGAAGCTTGAGCCTATATTC+AGG | 0.453785 | 6:-71971285 | MsG0680033704.01.T01:CDS |
| CTTCATTGGATCAGATTTGA+GGG | 0.457788 | 6:-71970809 | MsG0680033704.01.T01:CDS |
| ATGAATCCCACTTGTGTGAA+TGG | 0.466445 | 6:-71970836 | MsG0680033704.01.T01:CDS |
| ATATTCAGGCTTCCTCTTCG+TGG | 0.472954 | 6:-71971271 | MsG0680033704.01.T01:CDS |
| GCCAGCAATATAAGGGTGCT+TGG | 0.479014 | 6:+71971216 | None:intergenic |
| CATATTTATCAATTTGGTCC+TGG | 0.487310 | 6:+71970693 | None:intergenic |
| TGTTTGTCTGAACCAACTAC+TGG | 0.488260 | 6:-71971142 | MsG0680033704.01.T01:CDS |
| ATGGGTTGCAGATCACTATA+GGG | 0.489445 | 6:+71971116 | None:intergenic |
| CTGGGTTGCCAGCAATATAA+GGG | 0.489778 | 6:+71971209 | None:intergenic |
| CATTGGAGAATCATGGACTA+AGG | 0.493487 | 6:-71970558 | MsG0680033704.01.T01:CDS |
| AGTGATCTGCAACCCATTCA+CGG | 0.496837 | 6:-71971110 | MsG0680033704.01.T01:CDS |
| TCCTTCAATGAGATTAGACT+TGG | 0.497436 | 6:+71970329 | None:intergenic |
| ACTTCATTGGATCAGATTTG+AGG | 0.504033 | 6:-71970810 | MsG0680033704.01.T01:CDS |
| GTGATCTGCAACCCATTCAC+GGG | 0.506673 | 6:-71971109 | MsG0680033704.01.T01:CDS |
| GAGATTAGACTTGGAATATG+TGG | 0.511414 | 6:+71970338 | None:intergenic |
| TATCAATAGCAAACGCAACT+GGG | 0.511945 | 6:+71970723 | None:intergenic |
| CCTAATAAATATGGAGTCAA+GGG | 0.514180 | 6:-71970404 | MsG0680033704.01.T01:CDS |
| ACATTGATATTTCTCCATGT+TGG | 0.515176 | 6:+71970887 | None:intergenic |
| TATTAAACTTATCACGATCT+GGG | 0.523193 | 6:+71971191 | None:intergenic |
| TTGGATCAGATTTGAGGGAA+GGG | 0.525143 | 6:-71970804 | MsG0680033704.01.T01:CDS |
| CTTCGAATATGTTACAATGT+GGG | 0.528464 | 6:-71970597 | MsG0680033704.01.T01:CDS |
| ATTGGATCAGATTTGAGGGA+AGG | 0.537939 | 6:-71970805 | MsG0680033704.01.T01:CDS |
| TTTCAGGATCGCACTCAAGA+AGG | 0.539105 | 6:+71971335 | None:intergenic |
| GCCTAATAAATATGGAGTCA+AGG | 0.540468 | 6:-71970405 | MsG0680033704.01.T01:CDS |
| CCGGTAAAACACTTTGAAGA+GGG | 0.547837 | 6:-71970476 | MsG0680033704.01.T01:CDS |
| AAGACTTCCTGAAGCTACTA+CGG | 0.549332 | 6:-71971077 | MsG0680033704.01.T01:CDS |
| ATACGAACCGTAGTAGCTTC+AGG | 0.553825 | 6:+71971070 | None:intergenic |
| AATATGGCATTGGAGAATCA+TGG | 0.555886 | 6:-71970565 | MsG0680033704.01.T01:CDS |
| GATCCTGAAAAGTTTGAGAA+TGG | 0.564351 | 6:-71971322 | MsG0680033704.01.T01:CDS |
| TGGTAACATACATATTAGCA+TGG | 0.572107 | 6:-71970660 | MsG0680033704.01.T01:CDS |
| GATCGCACTCAAGAAGGTAG+AGG | 0.575897 | 6:+71971341 | None:intergenic |
| GTTATGAATGAATATGGCAT+TGG | 0.576286 | 6:-71970575 | MsG0680033704.01.T01:CDS |
| TCTTCGAATATGTTACAATG+TGG | 0.577095 | 6:-71970598 | MsG0680033704.01.T01:CDS |
| ATATGAATGATGTAACAATA+CGG | 0.582167 | 6:+71970448 | None:intergenic |
| AAGTGCACCATTCACACAAG+TGG | 0.585491 | 6:+71970829 | None:intergenic |
| GGTTCGTATGCCGAGTGACA+CGG | 0.587632 | 6:-71971056 | MsG0680033704.01.T01:CDS |
| TCCGGTAAAACACTTTGAAG+AGG | 0.588102 | 6:-71970477 | MsG0680033704.01.T01:CDS |
| TGTTATACGTGTCAATTCCT+CGG | 0.592874 | 6:-71970954 | MsG0680033704.01.T01:CDS |
| ATTACACGAGCCGTGTCACT+CGG | 0.594903 | 6:+71971046 | None:intergenic |
| TCATTGAAGGATGCCATGAA+AGG | 0.601331 | 6:-71970317 | MsG0680033704.01.T01:CDS |
| CATGAAAGGATACAATATTG+AGG | 0.603961 | 6:-71970303 | MsG0680033704.01.T01:CDS |
| CACAATGCATGACGCCACGT+CGG | 0.612349 | 6:+71970503 | None:intergenic |
| ATCAATAGCAAACGCAACTG+GGG | 0.613843 | 6:+71970724 | None:intergenic |
| CGAGTGTGTGTATCTCAACA+AGG | 0.616725 | 6:+71970915 | None:intergenic |
| CGTGTAATAGGACAAGAAGC+TGG | 0.617160 | 6:-71971031 | MsG0680033704.01.T01:CDS |
| GGTAACATACATATTAGCAT+GGG | 0.617345 | 6:-71970659 | MsG0680033704.01.T01:CDS |
| AGGTGTTGAATATCCACTCA+AGG | 0.621823 | 6:-71970283 | MsG0680033704.01.T01:intron |
| CTTGTTGAGATACACACACT+CGG | 0.625865 | 6:-71970914 | MsG0680033704.01.T01:CDS |
| ATCGCACTCAAGAAGGTAGA+GGG | 0.626102 | 6:+71971342 | None:intergenic |
| GGTGTGGAAAGTTTAAATTG+CGG | 0.639563 | 6:-71969709 | MsG0680033704.01.T01:CDS |
| ACACACTCGGAACACCAACA+TGG | 0.640562 | 6:-71970901 | MsG0680033704.01.T01:CDS |
| TGTACAATCCTTTACCGACG+TGG | 0.646799 | 6:-71970517 | MsG0680033704.01.T01:CDS |
| GAACACACGCTCAAAGTCCG+AGG | 0.655923 | 6:+71970937 | None:intergenic |
| AGTGCACCATTCACACAAGT+GGG | 0.658959 | 6:+71970830 | None:intergenic |
| TCAATAGCAAACGCAACTGG+GGG | 0.679510 | 6:+71970725 | None:intergenic |
| TGATCTGCAACCCATTCACG+GGG | 0.695791 | 6:-71971108 | MsG0680033704.01.T01:CDS |
| GATTGTACAAAGTATCAATG+TGG | 0.712500 | 6:+71970531 | None:intergenic |
| AACATGGAGAAATATCAATG+TGG | 0.716841 | 6:-71970885 | MsG0680033704.01.T01:CDS |
| GATCTGCAACCCATTCACGG+GGG | 0.817774 | 6:-71971107 | MsG0680033704.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAGAAAACAATATT+AGG | + | Chr6:71971316-71971335 | None:intergenic | 10.0% |
| !! | TATAAAAGAAAACAATATTA+GGG | + | Chr6:71971315-71971334 | None:intergenic | 10.0% |
| !!! | AATATTGTTTTCTTTTATAT+AGG | - | Chr6:71971316-71971335 | MsG0680033704.01.T01:CDS | 10.0% |
| !!! | ATTAATTACTATGATTTTTA+TGG | + | Chr6:71970851-71970870 | None:intergenic | 10.0% |
| !!! | TTAATTACTATGATTTTTAT+GGG | + | Chr6:71970850-71970869 | None:intergenic | 10.0% |
| !! | AATATAAGGTAATACATATT+TGG | - | Chr6:71970064-71970083 | MsG0680033704.01.T01:intron | 15.0% |
| !! | TAATGGAAATAAATTTATGT+GGG | - | Chr6:71971122-71971141 | MsG0680033704.01.T01:CDS | 15.0% |
| !! | TTAATGGAAATAAATTTATG+TGG | - | Chr6:71971121-71971140 | MsG0680033704.01.T01:CDS | 15.0% |
| !!! | ATAACTTAATTTTTCTGATT+CGG | - | Chr6:71970800-71970819 | MsG0680033704.01.T01:CDS | 15.0% |
| !! | AATAAGCTTAATTTACTACT+TGG | + | Chr6:71971243-71971262 | None:intergenic | 20.0% |
| !! | AATGGAAATAAATTTATGTG+GGG | - | Chr6:71971123-71971142 | MsG0680033704.01.T01:CDS | 20.0% |
| !! | AATTGCCATATTTATCAATT+TGG | + | Chr6:71970362-71970381 | None:intergenic | 20.0% |
| !! | ATATGAATGATGTAACAATA+CGG | + | Chr6:71970601-71970620 | None:intergenic | 20.0% |
| !! | TAAATTTCTTTCTATGTTGA+TGG | - | Chr6:71971170-71971189 | MsG0680033704.01.T01:CDS | 20.0% |
| !! | TCCTAAAACTAATGAATATA+AGG | - | Chr6:71970050-71970069 | MsG0680033704.01.T01:intron | 20.0% |
| !!! | ACCTTATATTCATTAGTTTT+AGG | + | Chr6:71970054-71970073 | None:intergenic | 20.0% |
| !!! | TATATTCATTAGTTTTAGGA+TGG | + | Chr6:71970050-71970069 | None:intergenic | 20.0% |
| ! | AATATTGTGAATTCCTGTAA+TGG | - | Chr6:71969874-71969893 | MsG0680033704.01.T01:intron | 25.0% |
| ! | AGACATGAAAATGAAATTTG+AGG | + | Chr6:71970189-71970208 | None:intergenic | 25.0% |
| ! | AGCTAAAATTGCAATTTGTA+GGG | + | Chr6:71971272-71971291 | None:intergenic | 25.0% |
| ! | ATATTAAACTTATCACGATC+TGG | + | Chr6:71969859-71969878 | None:intergenic | 25.0% |
| ! | ATTATAAACGGTGTATTCAA+TGG | - | Chr6:71970875-71970894 | MsG0680033704.01.T01:CDS | 25.0% |
| ! | CATTATATTTGGAGAAAGTA+AGG | - | Chr6:71970898-71970917 | MsG0680033704.01.T01:CDS | 25.0% |
| ! | GTATTCAATGGCATTATATT+TGG | - | Chr6:71970887-71970906 | MsG0680033704.01.T01:CDS | 25.0% |
| ! | TACTATGAGCCTAATAAATA+TGG | - | Chr6:71970633-71970652 | MsG0680033704.01.T01:CDS | 25.0% |
| ! | TAGCTAAAATTGCAATTTGT+AGG | + | Chr6:71971273-71971292 | None:intergenic | 25.0% |
| ! | TATATATATATGTGTGTGTG+TGG | - | Chr6:71970996-71971015 | MsG0680033704.01.T01:CDS | 25.0% |
| ! | TATTAAACTTATCACGATCT+GGG | + | Chr6:71969858-71969877 | None:intergenic | 25.0% |
| ! | TGTTACATCATTCATATGAT+TGG | - | Chr6:71970604-71970623 | MsG0680033704.01.T01:CDS | 25.0% |
| !! | TGTTTTCTTTTATATAGGTG+TGG | - | Chr6:71971321-71971340 | MsG0680033704.01.T01:CDS | 25.0% |
| AACATGGAGAAATATCAATG+TGG | - | Chr6:71970161-71970180 | MsG0680033704.01.T01:intron | 30.0% | |
| AATTAGATTCTTACCTTGAG+TGG | + | Chr6:71970779-71970798 | None:intergenic | 30.0% | |
| ACATTGATATTTCTCCATGT+TGG | + | Chr6:71970162-71970181 | None:intergenic | 30.0% | |
| ATCTTGACACTGACAATTAA+TGG | - | Chr6:71971105-71971124 | MsG0680033704.01.T01:CDS | 30.0% | |
| ATTAGCATGGGAGAATTAAA+GGG | - | Chr6:71970399-71970418 | MsG0680033704.01.T01:CDS | 30.0% | |
| CAGGACCAAATTGATAAATA+TGG | - | Chr6:71970354-71970373 | MsG0680033704.01.T01:CDS | 30.0% | |
| CATATTTATCAATTTGGTCC+TGG | + | Chr6:71970356-71970375 | None:intergenic | 30.0% | |
| CATGAAAGGATACAATATTG+AGG | - | Chr6:71970743-71970762 | MsG0680033704.01.T01:CDS | 30.0% | |
| CCTAATAAATATGGAGTCAA+GGG | - | Chr6:71970642-71970661 | MsG0680033704.01.T01:CDS | 30.0% | |
| CTAAAATTGCAATTTGTAGG+GGG | + | Chr6:71971270-71971289 | None:intergenic | 30.0% | |
| CTCAATATTGTATCCTTTCA+TGG | + | Chr6:71970745-71970764 | None:intergenic | 30.0% | |
| CTTCGAATATGTTACAATGT+GGG | - | Chr6:71970449-71970468 | MsG0680033704.01.T01:CDS | 30.0% | |
| GATAAATATGGCAATTTGTC+TGG | - | Chr6:71970366-71970385 | MsG0680033704.01.T01:CDS | 30.0% | |
| GCTAAAATTGCAATTTGTAG+GGG | + | Chr6:71971271-71971290 | None:intergenic | 30.0% | |
| GGTAACATACATATTAGCAT+GGG | - | Chr6:71970387-71970406 | MsG0680033704.01.T01:CDS | 30.0% | |
| GTTATGAATGAATATGGCAT+TGG | - | Chr6:71970471-71970490 | MsG0680033704.01.T01:CDS | 30.0% | |
| GTTGTAAAAGCAAATGATTG+AGG | + | Chr6:71970965-71970984 | None:intergenic | 30.0% | |
| TAAAATTGCAATTTGTAGGG+GGG | + | Chr6:71971269-71971288 | None:intergenic | 30.0% | |
| TATTAGCATGGGAGAATTAA+AGG | - | Chr6:71970398-71970417 | MsG0680033704.01.T01:CDS | 30.0% | |
| TCTTCGAATATGTTACAATG+TGG | - | Chr6:71970448-71970467 | MsG0680033704.01.T01:CDS | 30.0% | |
| TGGTAACATACATATTAGCA+TGG | - | Chr6:71970386-71970405 | MsG0680033704.01.T01:CDS | 30.0% | |
| ! | AATTTACTACTTGGTAGCTA+AGG | + | Chr6:71971234-71971253 | None:intergenic | 30.0% |
| ! | ATGTGGGTTATGAATGAATA+TGG | - | Chr6:71970465-71970484 | MsG0680033704.01.T01:CDS | 30.0% |
| ! | ATTTCTTTCTATGTTGATGG+AGG | - | Chr6:71971173-71971192 | MsG0680033704.01.T01:CDS | 30.0% |
| ! | GATTGTACAAAGTATCAATG+TGG | + | Chr6:71970518-71970537 | None:intergenic | 30.0% |
| !!! | GTTTTTGTTTTGAAAGTGAG+AGG | - | Chr6:71970280-71970299 | MsG0680033704.01.T01:intron | 30.0% |
| ACTTCATTGGATCAGATTTG+AGG | - | Chr6:71970236-71970255 | MsG0680033704.01.T01:intron | 35.0% | |
| CCCTTGACTCCATATTTATT+AGG | + | Chr6:71970645-71970664 | None:intergenic | 35.0% | |
| CTTCATTGGATCAGATTTGA+GGG | - | Chr6:71970237-71970256 | MsG0680033704.01.T01:intron | 35.0% | |
| GAGATTAGACTTGGAATATG+TGG | + | Chr6:71970711-71970730 | None:intergenic | 35.0% | |
| GATCCTGAAAAGTTTGAGAA+TGG | - | Chr6:71969724-71969743 | MsG0680033704.01.T01:intron | 35.0% | |
| GATTCGGCAATTGAATTTGA+TGG | - | Chr6:71970816-71970835 | MsG0680033704.01.T01:CDS | 35.0% | |
| GCCTAATAAATATGGAGTCA+AGG | - | Chr6:71970641-71970660 | MsG0680033704.01.T01:CDS | 35.0% | |
| GGTGTGGAAAGTTTAAATTG+CGG | - | Chr6:71971337-71971356 | MsG0680033704.01.T01:CDS | 35.0% | |
| GTGTGGAAAGTTTAAATTGC+GGG | - | Chr6:71971338-71971357 | MsG0680033704.01.T01:CDS | 35.0% | |
| TAATTGTCAGTGTCAAGATG+TGG | + | Chr6:71971104-71971123 | None:intergenic | 35.0% | |
| TATCAATAGCAAACGCAACT+GGG | + | Chr6:71970326-71970345 | None:intergenic | 35.0% | |
| TCCAAGTCTAATCTCATTGA+AGG | - | Chr6:71970716-71970735 | MsG0680033704.01.T01:CDS | 35.0% | |
| TCCTTCAATGAGATTAGACT+TGG | + | Chr6:71970720-71970739 | None:intergenic | 35.0% | |
| TGTTATACGTGTCAATTCCT+CGG | - | Chr6:71970092-71970111 | MsG0680033704.01.T01:intron | 35.0% | |
| ! | AATATGGCATTGGAGAATCA+TGG | - | Chr6:71970481-71970500 | MsG0680033704.01.T01:CDS | 35.0% |
| ! | CTTCCATTCTCAAACTTTTC+AGG | + | Chr6:71969730-71969749 | None:intergenic | 35.0% |
| ! | GGTTTTCTCACTTAAGCTTA+TGG | - | Chr6:71970934-71970953 | MsG0680033704.01.T01:CDS | 35.0% |
| ! | TCAAGGGTTTTCGAATTCAT+GGG | - | Chr6:71970658-71970677 | MsG0680033704.01.T01:CDS | 35.0% |
| ! | TGCTATTGATAGTTATGTCC+AGG | - | Chr6:71970335-71970354 | MsG0680033704.01.T01:CDS | 35.0% |
| !! | AAGTAAGGCTTGTTAGACAT+AGG | - | Chr6:71970913-71970932 | MsG0680033704.01.T01:CDS | 35.0% |
| AAGACTTCCTGAAGCTACTA+CGG | - | Chr6:71969969-71969988 | MsG0680033704.01.T01:intron | 40.0% | |
| ACTATAGGGTTTCCAGTAGT+TGG | + | Chr6:71969919-71969938 | None:intergenic | 40.0% | |
| ATCAATAGCAAACGCAACTG+GGG | + | Chr6:71970325-71970344 | None:intergenic | 40.0% | |
| ATGAATCCCACTTGTGTGAA+TGG | - | Chr6:71970210-71970229 | MsG0680033704.01.T01:intron | 40.0% | |
| ATTGGATCAGATTTGAGGGA+AGG | - | Chr6:71970241-71970260 | MsG0680033704.01.T01:intron | 40.0% | |
| CAAACATAGCAAGCCATTAC+AGG | + | Chr6:71969890-71969909 | None:intergenic | 40.0% | |
| CGAATTCATGGGTATTCTTC+AGG | - | Chr6:71970669-71970688 | MsG0680033704.01.T01:CDS | 40.0% | |
| CTATCAATAGCAAACGCAAC+TGG | + | Chr6:71970327-71970346 | None:intergenic | 40.0% | |
| CTTGTTGAGATACACACACT+CGG | - | Chr6:71970132-71970151 | MsG0680033704.01.T01:intron | 40.0% | |
| TCATTGAAGGATGCCATGAA+AGG | - | Chr6:71970729-71970748 | MsG0680033704.01.T01:CDS | 40.0% | |
| TGAAGCTTGAGCCTATATTC+AGG | - | Chr6:71969761-71969780 | MsG0680033704.01.T01:intron | 40.0% | |
| TGTTTGTCTGAACCAACTAC+TGG | - | Chr6:71969904-71969923 | MsG0680033704.01.T01:intron | 40.0% | |
| TTATGAATTCCCCCGTGAAT+GGG | + | Chr6:71969951-71969970 | None:intergenic | 40.0% | |
| TTGGATCAGATTTGAGGGAA+GGG | - | Chr6:71970242-71970261 | MsG0680033704.01.T01:intron | 40.0% | |
| ! | ATGGGTTGCAGATCACTATA+GGG | + | Chr6:71969933-71969952 | None:intergenic | 40.0% |
| ! | CATTGGAGAATCATGGACTA+AGG | - | Chr6:71970488-71970507 | MsG0680033704.01.T01:CDS | 40.0% |
| ! | CCGGTAAAACACTTTGAAGA+GGG | - | Chr6:71970570-71970589 | MsG0680033704.01.T01:CDS | 40.0% |
| ! | GTCAAGGGTTTTCGAATTCA+TGG | - | Chr6:71970657-71970676 | MsG0680033704.01.T01:CDS | 40.0% |
| ! | TCCGGTAAAACACTTTGAAG+AGG | - | Chr6:71970569-71970588 | MsG0680033704.01.T01:CDS | 40.0% |
| ! | TCTTTCTATGTTGATGGAGG+AGG | - | Chr6:71971176-71971195 | MsG0680033704.01.T01:CDS | 40.0% |
| ! | TGTTGATGGAGGAGGAAAAA+TGG | - | Chr6:71971184-71971203 | MsG0680033704.01.T01:CDS | 40.0% |
| !! | AATGGGTTGCAGATCACTAT+AGG | + | Chr6:71969934-71969953 | None:intergenic | 40.0% |
| !! | AGGTGTTGAATATCCACTCA+AGG | - | Chr6:71970763-71970782 | MsG0680033704.01.T01:CDS | 40.0% |
| !! | ATAGGACAAGAAGCTGGTTT+TGG | - | Chr6:71970021-71970040 | MsG0680033704.01.T01:intron | 40.0% |
| !! | CCCTCTTCAAAGTGTTTTAC+CGG | + | Chr6:71970573-71970592 | None:intergenic | 40.0% |
| AAGTGCACCATTCACACAAG+TGG | + | Chr6:71970220-71970239 | None:intergenic | 45.0% | |
| AATTGCAATTTGTAGGGGGG+TGG | + | Chr6:71971266-71971285 | None:intergenic | 45.0% | |
| AGTGATCTGCAACCCATTCA+CGG | - | Chr6:71969936-71969955 | MsG0680033704.01.T01:intron | 45.0% | |
| AGTGCACCATTCACACAAGT+GGG | + | Chr6:71970219-71970238 | None:intergenic | 45.0% | |
| ATACGAACCGTAGTAGCTTC+AGG | + | Chr6:71969979-71969998 | None:intergenic | 45.0% | |
| ATATTCAGGCTTCCTCTTCG+TGG | - | Chr6:71969775-71969794 | MsG0680033704.01.T01:intron | 45.0% | |
| ATCGCACTCAAGAAGGTAGA+GGG | + | Chr6:71969707-71969726 | None:intergenic | 45.0% | |
| CGAAGAGGAAGCCTGAATAT+AGG | + | Chr6:71969775-71969794 | None:intergenic | 45.0% | |
| CGAGTGTGTGTATCTCAACA+AGG | + | Chr6:71970134-71970153 | None:intergenic | 45.0% | |
| CGTGTAATAGGACAAGAAGC+TGG | - | Chr6:71970015-71970034 | MsG0680033704.01.T01:intron | 45.0% | |
| CTGGGTTGCCAGCAATATAA+GGG | + | Chr6:71969840-71969859 | None:intergenic | 45.0% | |
| CTTATGAATTCCCCCGTGAA+TGG | + | Chr6:71969952-71969971 | None:intergenic | 45.0% | |
| GTGTGAATGGTGCACTTCAT+TGG | - | Chr6:71970223-71970242 | MsG0680033704.01.T01:intron | 45.0% | |
| TCAATAGCAAACGCAACTGG+GGG | + | Chr6:71970324-71970343 | None:intergenic | 45.0% | |
| TCCAAGCACCCTTATATTGC+TGG | - | Chr6:71969829-71969848 | MsG0680033704.01.T01:intron | 45.0% | |
| TCTGGGTTGCCAGCAATATA+AGG | + | Chr6:71969841-71969860 | None:intergenic | 45.0% | |
| TGTACAATCCTTTACCGACG+TGG | - | Chr6:71970529-71970548 | MsG0680033704.01.T01:CDS | 45.0% | |
| TTTCAGGATCGCACTCAAGA+AGG | + | Chr6:71969714-71969733 | None:intergenic | 45.0% | |
| ! | CTTTTGACATCACCACGAAG+AGG | + | Chr6:71969790-71969809 | None:intergenic | 45.0% |
| ! | GCGTCATGCATTGTGTTTTC+CGG | - | Chr6:71970551-71970570 | MsG0680033704.01.T01:CDS | 45.0% |
| !!! | TAATTAATTTTCATTATAAA+CGG | - | Chr6:71970863-71970882 | MsG0680033704.01.T01:CDS | 5.0% |
| ACACACTCGGAACACCAACA+TGG | - | Chr6:71970145-71970164 | MsG0680033704.01.T01:intron | 50.0% | |
| AGTGACACGGCTCGTGTAAT+AGG | - | Chr6:71970003-71970022 | MsG0680033704.01.T01:intron | 50.0% | |
| GATCGCACTCAAGAAGGTAG+AGG | + | Chr6:71969708-71969727 | None:intergenic | 50.0% | |
| GTGATCTGCAACCCATTCAC+GGG | - | Chr6:71969937-71969956 | MsG0680033704.01.T01:intron | 50.0% | |
| TGATCTGCAACCCATTCACG+GGG | - | Chr6:71969938-71969957 | MsG0680033704.01.T01:intron | 50.0% | |
| ! | ATTACACGAGCCGTGTCACT+CGG | + | Chr6:71970003-71970022 | None:intergenic | 50.0% |
| !! | GCCAGCAATATAAGGGTGCT+TGG | + | Chr6:71969833-71969852 | None:intergenic | 50.0% |
| CACAATGCATGACGCCACGT+CGG | + | Chr6:71970546-71970565 | None:intergenic | 55.0% | |
| GAACACACGCTCAAAGTCCG+AGG | + | Chr6:71970112-71970131 | None:intergenic | 55.0% | |
| GATCTGCAACCCATTCACGG+GGG | - | Chr6:71969939-71969958 | MsG0680033704.01.T01:intron | 55.0% | |
| GGTGTGTGTGTGTGTGTGTG+TGG | - | Chr6:71971017-71971036 | MsG0680033704.01.T01:CDS | 55.0% | |
| GGTTCGTATGCCGAGTGACA+CGG | - | Chr6:71969990-71970009 | MsG0680033704.01.T01:intron | 55.0% | |
| GTGTGTGTGTGTGTGTGTGG+TGG | - | Chr6:71971020-71971039 | MsG0680033704.01.T01:CDS | 55.0% | |
| AGCAAACGCAACTGGGGGAG+AGG | + | Chr6:71970319-71970338 | None:intergenic | 60.0% | |
| GCAAACGCAACTGGGGGAGA+GGG | + | Chr6:71970318-71970337 | None:intergenic | 60.0% | |
| GCATGACGCCACGTCGGTAA+AGG | + | Chr6:71970540-71970559 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 71969667 | 71971401 | 71969667 | ID=MsG0680033704.01;Name=MsG0680033704.01 |
| Chr6 | mRNA | 71969667 | 71971401 | 71969667 | ID=MsG0680033704.01.T01;Parent=MsG0680033704.01;Name=MsG0680033704.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0|0.5|2|0|393 |
| Chr6 | exon | 71970284 | 71971401 | 71970284 | ID=MsG0680033704.01.T01:exon:4319;Parent=MsG0680033704.01.T01 |
| Chr6 | exon | 71969667 | 71969730 | 71969667 | ID=MsG0680033704.01.T01:exon:4320;Parent=MsG0680033704.01.T01 |
| Chr6 | CDS | 71970284 | 71971401 | 71970284 | ID=MsG0680033704.01.T01:cds;Parent=MsG0680033704.01.T01 |
| Chr6 | CDS | 71969667 | 71969730 | 71969667 | ID=MsG0680033704.01.T01:cds;Parent=MsG0680033704.01.T01 |
| Gene Sequence |
| Protein sequence |
