AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025080.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025080.01.T01 MTR_5g021880 62.140 486 132 7 130 570 13 491 0.0 555
MsG0580025080.01.T01 MTR_5g021880 61.491 483 132 8 130 565 13 488 0.0 540
MsG0580025080.01.T01 MTR_5g021880 61.966 468 126 7 130 552 13 473 0.0 533
MsG0580025080.01.T01 MTR_5g021860 61.297 478 124 10 138 568 12 475 0.0 525
MsG0580025080.01.T01 MTR_4g027370 61.734 473 120 10 140 565 14 472 0.0 524
MsG0580025080.01.T01 MTR_5g022040 59.026 493 137 11 130 572 13 490 0.0 521
MsG0580025080.01.T01 MTR_5g022900 60.168 477 131 10 143 572 18 482 1.37e-179 516
MsG0580025080.01.T01 MTR_5g021860 61.957 460 114 10 140 552 14 459 3.45e-177 509
MsG0580025080.01.T01 MTR_5g007940 60.619 452 139 10 143 572 14 448 7.27e-170 489
MsG0580025080.01.T01 MTR_5g022045 56.067 478 151 10 126 572 10 459 1.39e-165 479
MsG0580025080.01.T01 MTR_7g090810 54.646 452 140 9 129 551 13 428 1.35e-141 417
MsG0580025080.01.T01 MTR_5g010550 53.151 476 149 11 142 572 30 476 1.48e-138 410
MsG0580025080.01.T01 MTR_5g010550 53.797 474 149 11 142 572 44 490 1.86e-138 411
MsG0580025080.01.T01 MTR_5g010560 53.586 474 146 13 142 572 30 472 1.94e-138 410
MsG0580025080.01.T01 MTR_5g010610 53.659 451 146 11 143 555 21 446 6.02e-136 407
MsG0580025080.01.T01 MTR_7g117100 58.289 374 106 10 218 567 1 348 1.41e-130 386
MsG0580025080.01.T01 MTR_5g022090 52.643 454 118 12 130 552 13 400 2.24e-129 384
MsG0580025080.01.T01 MTR_0627s0010 50.691 434 137 10 130 519 13 413 3.17e-120 362
MsG0580025080.01.T01 MTR_6g046320 55.496 373 127 7 130 467 13 381 5.47e-117 355
MsG0580025080.01.T01 MTR_7g090810 61.783 314 79 8 288 572 4 305 1.48e-116 348
MsG0580025080.01.T01 MTR_5g022750 47.007 451 169 15 130 572 13 401 4.77e-103 318
MsG0580025080.01.T01 MTR_7g117100 59.011 283 83 6 218 480 1 270 1.70e-101 308
MsG0580025080.01.T01 MTR_5g027330 42.105 475 204 14 131 571 15 452 7.91e-99 308
MsG0580025080.01.T01 MTR_5g027370 41.895 475 205 14 131 571 4 441 5.34e-98 305
MsG0580025080.01.T01 MTR_5g010660 46.604 427 153 12 143 552 21 389 2.60e-93 294
MsG0580025080.01.T01 MTR_5g021920 55.814 258 104 6 130 380 13 267 9.26e-80 253
MsG0580025080.01.T01 MTR_5g072370 83.465 127 17 1 1 123 1 127 2.33e-63 206
MsG0580025080.01.T01 MTR_5g044895 83.465 127 17 1 1 123 1 127 2.85e-62 204
MsG0580025080.01.T01 MTR_6g043270 81.102 127 20 1 1 123 1 127 4.67e-60 198
MsG0580025080.01.T01 MTR_3g028620 80.315 127 21 1 1 123 1 127 1.41e-59 197
MsG0580025080.01.T01 MTR_8g470030 81.102 127 20 1 1 123 1 127 2.89e-59 196
MsG0580025080.01.T01 MTR_3g060830 77.953 127 24 1 1 123 1 127 1.39e-58 194
MsG0580025080.01.T01 MTR_5g067630 77.165 127 25 1 1 123 1 127 3.69e-57 190
MsG0580025080.01.T01 MTR_0005s0220 71.631 141 34 2 1 135 1 141 4.09e-57 190
MsG0580025080.01.T01 MTR_2g058650 77.165 127 25 1 1 123 1 127 7.61e-57 189
MsG0580025080.01.T01 MTR_3g033840 81.356 118 18 1 10 123 2 119 1.26e-56 187
MsG0580025080.01.T01 MTR_4g045603 75.591 127 27 1 1 123 1 127 1.47e-55 186
MsG0580025080.01.T01 MTR_5g063995 75.591 127 27 1 1 123 1 127 3.77e-55 185
MsG0580025080.01.T01 MTR_5g009790 77.165 127 25 1 1 123 1 127 6.34e-55 189
MsG0580025080.01.T01 MTR_7g061620 75.591 127 27 1 1 123 1 127 1.83e-54 183
MsG0580025080.01.T01 MTR_7g061360 74.803 127 28 1 1 123 1 127 4.83e-53 179
MsG0580025080.01.T01 MTR_8g466300 75.591 127 20 2 1 123 1 120 1.42e-52 178
MsG0580025080.01.T01 MTR_1g036730 68.800 125 35 1 1 121 5 129 1.05e-48 168
MsG0580025080.01.T01 MTR_0083s0070 82.075 106 15 1 22 123 1 106 1.44e-48 167
MsG0580025080.01.T01 MTR_5g053480 67.200 125 36 2 1 121 5 128 4.09e-47 164
MsG0580025080.01.T01 MTR_2g083590 66.400 125 37 2 1 121 5 128 5.09e-47 163
MsG0580025080.01.T01 MTR_0214s0030 80.189 106 17 1 22 123 1 106 1.07e-46 162
MsG0580025080.01.T01 MTR_0360s0010 76.147 109 19 2 22 123 1 109 2.05e-44 155
MsG0580025080.01.T01 MTR_4g061900 62.205 127 44 1 1 123 23 149 2.89e-44 154
MsG0580025080.01.T01 MTR_6g036940 58.993 139 41 2 1 123 5 143 1.06e-43 155
MsG0580025080.01.T01 MTR_2g061240 86.207 87 12 0 37 123 3 89 1.26e-43 153
MsG0580025080.01.T01 MTR_5g048800 74.528 106 23 1 22 123 1 106 4.65e-42 149
MsG0580025080.01.T01 MTR_4g069290 64.122 131 39 2 1 123 1 131 9.78e-42 149
MsG0580025080.01.T01 MTR_8g479440 88.889 81 9 0 43 123 38 118 8.65e-41 145
MsG0580025080.01.T01 MTR_3g034000 73.000 100 23 1 1 96 1 100 7.86e-40 140
MsG0580025080.01.T01 MTR_1g053405 64.602 113 32 2 1 105 24 136 8.80e-40 142
MsG0580025080.01.T01 MTR_6g466390 83.784 74 12 0 50 123 23 96 1.76e-36 133
MsG0580025080.01.T01 MTR_5g080380 67.327 101 29 1 27 123 1 101 3.70e-36 132
MsG0580025080.01.T01 MTR_4g054700 80.000 85 17 0 39 123 10 94 3.70e-36 133
MsG0580025080.01.T01 MTR_5g055710 83.117 77 12 1 56 132 10 85 6.30e-35 129
MsG0580025080.01.T01 MTR_7g051090 66.337 101 30 1 27 123 1 101 2.73e-34 128
MsG0580025080.01.T01 MTR_4g022300 59.091 110 41 1 10 115 2 111 3.95e-34 125
MsG0580025080.01.T01 MTR_6g042710 67.677 99 28 1 27 121 1 99 4.38e-34 127
MsG0580025080.01.T01 MTR_8g075640 69.318 88 23 1 1 84 1 88 4.66e-32 119
MsG0580025080.01.T01 MTR_0520s0020 65.306 98 25 2 58 146 1 98 2.31e-31 119
MsG0580025080.01.T01 MTR_7g055890 51.145 131 56 2 1 123 1 131 6.81e-31 119
MsG0580025080.01.T01 MTR_7g056780 72.727 77 19 2 48 123 17 92 4.50e-28 110
MsG0580025080.01.T01 MTR_3g463170 50.549 91 45 0 126 216 62 152 2.83e-24 99.8
MsG0580025080.01.T01 MTR_5g074870 56.579 76 33 0 141 216 67 142 4.63e-24 99.0
MsG0580025080.01.T01 MTR_4g055060 27.353 340 192 13 156 475 30 334 1.77e-19 91.3
MsG0580025080.01.T01 MTR_0064s0160 23.788 433 258 17 140 538 26 420 3.09e-19 90.9
MsG0580025080.01.T01 MTR_0115s0020 28.244 262 150 9 154 407 8 239 2.49e-17 84.7
MsG0580025080.01.T01 MTR_3g011020 26.648 364 185 15 156 495 28 333 3.43e-17 84.0
MsG0580025080.01.T01 MTR_7g407070 25.984 381 208 15 151 498 27 366 5.99e-17 83.6
MsG0580025080.01.T01 MTR_3g024110 24.384 406 225 16 155 536 100 447 1.15e-16 83.2
MsG0580025080.01.T01 MTR_3g013740 24.873 394 213 18 155 512 43 389 1.68e-16 82.4
MsG0580025080.01.T01 MTR_3g011060 26.727 333 184 12 155 462 27 324 1.73e-16 82.0
MsG0580025080.01.T01 MTR_3g034130 26.236 263 145 7 156 408 9 232 3.29e-16 80.9
MsG0580025080.01.T01 MTR_3g014570 25.587 426 231 22 138 536 12 378 3.84e-16 80.9
MsG0580025080.01.T01 MTR_3g006670 27.914 326 178 16 156 462 49 336 5.20e-16 80.9
MsG0580025080.01.T01 MTR_3g007360 24.798 371 204 15 160 504 56 377 5.34e-16 80.9
MsG0580025080.01.T01 MTR_6g044850 64.706 51 18 0 73 123 1 51 3.13e-15 72.8
MsG0580025080.01.T01 MTR_3g436150 28.736 261 145 11 151 405 27 252 7.40e-15 77.0
MsG0580025080.01.T01 MTR_1g097560 32.540 252 116 10 156 405 36 235 1.03e-14 76.6
MsG0580025080.01.T01 MTR_6g053260 26.402 428 223 19 155 545 336 708 5.07e-14 75.5
MsG0580025080.01.T01 MTR_2g034700 25.994 327 191 16 156 462 14 309 7.74e-14 73.9
MsG0580025080.01.T01 MTR_4g026610 53.333 60 28 0 55 114 1 60 7.93e-14 67.4
MsG0580025080.01.T01 MTR_2g047892 26.336 262 129 9 156 404 22 232 2.73e-13 72.4
MsG0580025080.01.T01 MTR_2g065860 25.623 281 162 9 156 422 12 259 3.00e-13 72.0
MsG0580025080.01.T01 MTR_5g070088 29.845 258 150 10 156 408 7 238 3.62e-13 71.6
MsG0580025080.01.T01 MTR_4g107820 24.299 321 190 11 127 442 7 279 4.19e-13 71.6
MsG0580025080.01.T01 MTR_4g107780 24.299 321 190 11 127 442 7 279 4.19e-13 71.6
MsG0580025080.01.T01 MTR_4g107820 24.299 321 190 11 127 442 7 279 4.36e-13 71.6
MsG0580025080.01.T01 MTR_4g107780 24.299 321 190 11 127 442 7 279 4.85e-13 71.6
MsG0580025080.01.T01 MTR_3g011100 25.090 279 144 13 155 417 234 463 8.79e-13 71.6
MsG0580025080.01.T01 MTR_8g013010 27.519 258 141 10 155 408 53 268 1.01e-12 69.7
MsG0580025080.01.T01 MTR_3g034180 25.260 289 161 8 156 430 123 370 2.45e-12 69.7
MsG0580025080.01.T01 MTR_5g070080 26.027 292 178 12 156 440 10 270 2.55e-12 69.3
MsG0580025080.01.T01 MTR_5g084150 52.727 55 26 0 69 123 64 118 2.64e-12 66.2
MsG0580025080.01.T01 MTR_6g053240 24.769 432 238 19 151 545 23 404 4.67e-12 68.6
MsG0580025080.01.T01 MTR_2g046800 26.330 376 203 18 156 493 14 353 4.73e-12 68.6
MsG0580025080.01.T01 MTR_4g030110 26.389 288 159 10 143 420 17 261 5.57e-12 68.2
MsG0580025080.01.T01 MTR_4g023080 24.848 330 178 13 156 480 9 273 7.90e-12 67.4
MsG0580025080.01.T01 MTR_2g047200 28.030 264 126 12 156 405 20 233 9.23e-12 67.4
MsG0580025080.01.T01 MTR_3g117535 93.750 32 2 0 92 123 9 40 9.33e-12 62.4
MsG0580025080.01.T01 MTR_1g017970 54.386 57 26 0 130 186 9 65 1.40e-11 62.4
MsG0580025080.01.T01 MTR_5g096630 26.471 306 174 13 155 438 17 293 1.74e-11 66.6
MsG0580025080.01.T01 MTR_4g030830 27.715 267 131 13 156 408 9 227 2.52e-11 66.2
MsG0580025080.01.T01 MTR_3g010430 25.148 338 173 13 155 462 35 322 2.94e-11 66.2
MsG0580025080.01.T01 MTR_0760s0010 24.800 250 140 6 164 413 55 256 3.58e-11 65.9
MsG0580025080.01.T01 MTR_3g024040 26.846 298 151 17 162 454 37 272 4.21e-11 65.5
MsG0580025080.01.T01 MTR_2g043400 26.296 270 123 11 160 405 27 244 5.44e-11 65.1
MsG0580025080.01.T01 MTR_5g048160 27.007 274 143 12 153 407 1 236 5.49e-11 65.1
MsG0580025080.01.T01 MTR_6g027910 25.758 264 159 10 160 416 13 246 8.83e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025080.01.T01 AT3G06240 25.229 436 267 13 130 536 14 419 2.21e-22 100

Find 107 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAGCATGGGAGAATTAA+AGG 0.242781 5:+13618716 MsG0580025080.01.T01:CDS
TTCTATGAACCTGAGAAATA+TGG 0.281540 5:+13618961 MsG0580025080.01.T01:CDS
AAGTGCAATTTAGCAAAATA+TGG 0.297283 5:-13617946 None:intergenic
ATGTCAACACTCCTCACTTT+TGG 0.300495 5:-13615717 None:intergenic
AACTTAAACCTGCCCTTGAC+TGG 0.301844 5:+13618439 MsG0580025080.01.T01:CDS
GATGGAAGATTATCAAAATA+AGG 0.303444 5:-13617829 None:intergenic
ATGAAAGGAGTAGCTGGTTT+TGG 0.309337 5:+13618360 MsG0580025080.01.T01:CDS
GAGCCATATTATTCTAAGTT+TGG 0.319702 5:+13618195 MsG0580025080.01.T01:CDS
ACACCAAACTTAGAATAATA+TGG 0.337197 5:-13618198 None:intergenic
CTAAAGGAATTCGGTTGAAT+TGG 0.337883 5:-13618257 None:intergenic
GTCCGAATCATGAGACTAAT+TGG 0.346456 5:-13617979 None:intergenic
CCTTCTCCGCCAGATGTGTT+TGG 0.356398 5:+13618660 MsG0580025080.01.T01:CDS
TTTGCACACACATTTACAAA+TGG 0.368423 5:-13617899 None:intergenic
AACTTACGATTAGTAGCTTC+AGG 0.374404 5:-13618318 None:intergenic
GTGCGGAAAGTTTAAATTGC+AGG 0.377457 5:+13619308 MsG0580025080.01.T01:CDS
ATAGAAGATCAAACAATTGC+GGG 0.382725 5:-13618944 None:intergenic
GCGGGGATGATATAATAATA+TGG 0.385378 5:-13618926 None:intergenic
GTGTTTGGAAAGCATAATAA+TGG 0.403825 5:+13618675 MsG0580025080.01.T01:CDS
TTTATGATCCAAAATCATAT+AGG 0.408388 5:+13618115 MsG0580025080.01.T01:CDS
AAGCATAATAATGGAATTCA+TGG 0.415797 5:+13618684 MsG0580025080.01.T01:CDS
TGCAAATCACTAAAGGAATT+CGG 0.420815 5:-13618266 None:intergenic
CCGATAAAACACTTTGAAGA+AGG 0.421266 5:+13618898 MsG0580025080.01.T01:CDS
TTATGCTTTCCAAACACATC+TGG 0.423063 5:-13618669 None:intergenic
CTTCATTGGATCAGATTTGA+AGG 0.423541 5:+13618582 MsG0580025080.01.T01:CDS
ACATGAGTGTACCCATTGTT+TGG 0.424245 5:-13615747 None:intergenic
TTATGATCCAAAATCATATA+GGG 0.426152 5:+13618116 MsG0580025080.01.T01:CDS
CTCGAGTTGTGGTCTTTATG+AGG 0.428995 5:+13615473 MsG0580025080.01.T01:CDS
ATGTGAATGGTGCACTTCAT+TGG 0.433566 5:+13618568 MsG0580025080.01.T01:CDS
ACAAATGGGAAGAGACTTGA+TGG 0.437938 5:-13617884 None:intergenic
CTCAAACAATCTGTTGAGAC+AGG 0.448801 5:-13619350 None:intergenic
TCCAAGTCTAATCTCATTGA+AGG 0.451150 5:+13619047 MsG0580025080.01.T01:CDS
CGCCAATTAGTCTCATGATT+CGG 0.455150 5:+13617977 MsG0580025080.01.T01:CDS
ATTAGCATGGGAGAATTAAA+GGG 0.458143 5:+13618717 MsG0580025080.01.T01:CDS
ACTTTGAATCCATATTTCTC+AGG 0.458188 5:-13618970 None:intergenic
ATGGAAGATTATCAAAATAA+GGG 0.459504 5:-13617828 None:intergenic
GTGATTTGCAACCCACTCAC+TGG 0.462410 5:+13618279 MsG0580025080.01.T01:CDS
CCAAACACATCTGGCGGAGA+AGG 0.465978 5:-13618660 None:intergenic
AAAATGGCGAGGACAATTAT+GGG 0.466812 5:+13618142 MsG0580025080.01.T01:CDS
TAAAGAGGAAGCTTGGACAT+AGG 0.468050 5:-13618096 None:intergenic
ATTTGGAGAATCATGGACTA+AGG 0.474821 5:+13618807 MsG0580025080.01.T01:intron
ACTTCAACATTTCTCCATGA+TGG 0.475125 5:-13618504 None:intergenic
TGGATCATAAAGAGGAAGCT+TGG 0.478504 5:-13618103 None:intergenic
TCAGAGGAAGCTGGTTCAGA+TGG 0.485230 5:+13615659 MsG0580025080.01.T01:CDS
TTTCCTTCACCATCACTACC+TGG 0.491049 5:-13615504 None:intergenic
ACATAGAAAATCCAAACAAT+GGG 0.495841 5:+13615736 MsG0580025080.01.T01:CDS
AAGTGCACCATTCACATAAG+TGG 0.499531 5:-13618562 None:intergenic
AAGCTACTAATCGTAAGTTA+AGG 0.499980 5:+13618322 MsG0580025080.01.T01:CDS
AAGTATCCCACTTATGTGAA+TGG 0.500515 5:+13618555 MsG0580025080.01.T01:CDS
CTCCAAGTGTGTTTATCTCA+AGG 0.511271 5:-13618479 None:intergenic
TGATTTGCAACCCACTCACT+GGG 0.511753 5:+13618280 MsG0580025080.01.T01:CDS
ATGTGGGTAGTGAGGTGAGA+TGG 0.515658 5:-13617847 None:intergenic
TCCTTCAATGAGATTAGACT+TGG 0.516886 5:-13619048 None:intergenic
TTGCACACACATTTACAAAT+GGG 0.517334 5:-13617898 None:intergenic
TGATGGTGAAGGAAAGAAAG+AGG 0.521808 5:+13615512 MsG0580025080.01.T01:CDS
TTTCAGGATCACACTCAAGA+AGG 0.523974 5:-13618035 None:intergenic
TAAGCAGAATGTGGGTAGTG+AGG 0.524662 5:-13617855 None:intergenic
ATAAGAATGAAAGGAGTAGC+TGG 0.527142 5:+13618354 MsG0580025080.01.T01:CDS
TGGGAAGTTTAAGCAGAATG+TGG 0.532422 5:-13617864 None:intergenic
GACATAGAAAATCCAAACAA+TGG 0.534423 5:+13615735 MsG0580025080.01.T01:CDS
GATCCTGAAAAGTTTGAGAC+TGG 0.544484 5:+13618048 MsG0580025080.01.T01:CDS
ACTTAAACCTGCCCTTGACT+GGG 0.545712 5:+13618440 MsG0580025080.01.T01:CDS
ATATGGCATTTGGAGAATCA+TGG 0.546549 5:+13618800 MsG0580025080.01.T01:intron
GGTGTTGTGAATTCTTGCAA+TGG 0.547329 5:+13618216 MsG0580025080.01.T01:CDS
CAATCTCTTCTGTGTCATAG+AGG 0.548978 5:-13615389 None:intergenic
ACATGAGTCTCAGAGGAAGC+TGG 0.558884 5:+13615650 MsG0580025080.01.T01:CDS
TGGTGAAAAGTGTATTAGCA+TGG 0.559771 5:+13618704 MsG0580025080.01.T01:CDS
AGTGGGTTGCAAATCACTAA+AGG 0.562712 5:-13618273 None:intergenic
GATTGAGTGTCACAAGGTTG+TGG 0.563160 5:+13615683 MsG0580025080.01.T01:CDS
CTTTATGAGGCGAATCAACC+AGG 0.564776 5:+13615486 MsG0580025080.01.T01:CDS
CACGCTCAAACACCCAGTCA+AGG 0.565459 5:-13618452 None:intergenic
TCAAACACCCAGTCAAGGGC+AGG 0.567407 5:-13618447 None:intergenic
TGCTTTCCAAACACATCTGG+CGG 0.568541 5:-13618666 None:intergenic
ACACACTTGGAGAACCATCA+TGG 0.568763 5:+13618490 MsG0580025080.01.T01:CDS
ATTATGGGGATCATCGTCAA+TGG 0.575230 5:+13618157 MsG0580025080.01.T01:CDS
CATGGGATTAGTCGTTCAGA+AGG 0.577256 5:+13619003 MsG0580025080.01.T01:CDS
GGGAAGTTTAAGCAGAATGT+GGG 0.579952 5:-13617863 None:intergenic
CATAAAACACGACTTTCTGA+AGG 0.580295 5:-13618856 None:intergenic
AGGAAATGACTGCAATCTCT+CGG 0.584058 5:-13618640 None:intergenic
GCGAATCAACCAGGTAGTGA+TGG 0.586093 5:+13615495 MsG0580025080.01.T01:CDS
ATCCTTGAGATAAACACACT+TGG 0.590008 5:+13618477 MsG0580025080.01.T01:CDS
ACGGATGTGATAAGAATGAA+AGG 0.590281 5:+13618345 MsG0580025080.01.T01:CDS
GGTGAAAAGTGTATTAGCAT+GGG 0.592706 5:+13618705 MsG0580025080.01.T01:CDS
TACTAATCGTAAGTTAAGGA+CGG 0.601757 5:+13618326 MsG0580025080.01.T01:CDS
GAGATTAGACTTGGAACATG+TGG 0.602060 5:-13619039 None:intergenic
CATAGAAGATCAAACAATTG+CGG 0.605372 5:-13618945 None:intergenic
GATCACACTCAAGAAGGTGC+AGG 0.607220 5:-13618029 None:intergenic
AGTGCACCATTCACATAAGT+GGG 0.608762 5:-13618561 None:intergenic
CTTATGAACTCCCCAGTGAG+TGG 0.609944 5:-13618291 None:intergenic
AGAAAGCACATGAGTCTCAG+AGG 0.611346 5:+13615643 MsG0580025080.01.T01:CDS
TCATTGAAGGATGTCGTGAA+AGG 0.612415 5:+13619060 MsG0580025080.01.T01:CDS
GACAACAAAATCTCGAGTTG+TGG 0.614234 5:+13615462 MsG0580025080.01.T01:CDS
ACGCTCAAACACCCAGTCAA+GGG 0.615567 5:-13618451 None:intergenic
TTATGAACTCCCCAGTGAGT+GGG 0.620701 5:-13618290 None:intergenic
AGGATTCAACGAAGTATCGA+TGG 0.635308 5:-13618836 None:intergenic
TGGTGTTGAATATTCACTCA+AGG 0.637622 5:+13619088 MsG0580025080.01.T01:CDS
TGAGTGTCACAAGGTTGTGG+TGG 0.638978 5:+13615686 MsG0580025080.01.T01:CDS
CAAATGGGAAGAGACTTGAT+GGG 0.645544 5:-13617883 None:intergenic
CGGAAAGTTTAAATTGCAGG+AGG 0.648313 5:+13619311 MsG0580025080.01.T01:CDS
CAACCAGGTAGTGATGGTGA+AGG 0.652858 5:+13615501 MsG0580025080.01.T01:CDS
TCAAACAATCTGTTGAGACA+GGG 0.659155 5:-13619349 None:intergenic
AAATGGCGAGGACAATTATG+GGG 0.668564 5:+13618143 MsG0580025080.01.T01:CDS
GAAAAGTTTGATGTTCAGTG+TGG 0.669310 5:+13615609 MsG0580025080.01.T01:CDS
TAGAAGATCAAACAATTGCG+GGG 0.671613 5:-13618943 None:intergenic
GATGGAGATTGAGTGTCACA+AGG 0.672907 5:+13615677 MsG0580025080.01.T01:CDS
TGGAAGAAAATCCAAAAGTG+AGG 0.686192 5:+13615706 MsG0580025080.01.T01:CDS
GGATGTCGTGAAAGGAGACA+TGG 0.699999 5:+13619068 MsG0580025080.01.T01:CDS
GATTTGCAACCCACTCACTG+GGG 0.778442 5:+13618281 MsG0580025080.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTAAGAAACT+TGG + Chr5:13617367-13617386 MsG0580025080.01.T01:intron 10.0%
!!! CAAATTAATTATGATTTTTA+AGG - Chr5:13619168-13619187 None:intergenic 10.0%
!!! TCTAATGTTTTATTTTTATT+GGG + Chr5:13619124-13619143 MsG0580025080.01.T01:intron 10.0%
!!! TTCTAATGTTTTATTTTTAT+TGG + Chr5:13619123-13619142 MsG0580025080.01.T01:intron 10.0%
!! AATATAAAGTGATAAAAATG+TGG + Chr5:13618403-13618422 MsG0580025080.01.T01:CDS 15.0%
!!! ACTTTATATTCATTAGTTTT+AGG - Chr5:13618393-13618412 None:intergenic 15.0%
!!! ATCTTTTAAGATCAAAATTT+TGG + Chr5:13615440-13615459 MsG0580025080.01.T01:CDS 15.0%
!!! ATTTAAATTTTTTGCTTCTT+CGG - Chr5:13617774-13617793 None:intergenic 15.0%
!!! TATTTTAAAAACCTTTTATG+TGG + Chr5:13616429-13616448 MsG0580025080.01.T01:intron 15.0%
!! AAAACAATATTAAGGAACAA+TGG - Chr5:13619277-13619296 None:intergenic 20.0%
!! ATGATATTGTAAAGGTTAAT+GGG - Chr5:13616776-13616795 None:intergenic 20.0%
!! ATGGAAGATTATCAAAATAA+GGG - Chr5:13617831-13617850 None:intergenic 20.0%
!! CCAATAATATTGTTAAGAAT+AGG - Chr5:13616839-13616858 None:intergenic 20.0%
!! CCTATTCTTAACAATATTAT+TGG + Chr5:13616836-13616855 MsG0580025080.01.T01:intron 20.0%
!! GAAGAAGCAAAAAATTTAAA+TGG + Chr5:13617773-13617792 MsG0580025080.01.T01:CDS 20.0%
!! TATTCTCTAATGTTAAAATG+TGG + Chr5:13618766-13618785 MsG0580025080.01.T01:intron 20.0%
!! TATTGTTAAGAATAGGTTTA+AGG - Chr5:13616832-13616851 None:intergenic 20.0%
!! TTATGATCCAAAATCATATA+GGG + Chr5:13618116-13618135 MsG0580025080.01.T01:CDS 20.0%
!! TTTATGATCCAAAATCATAT+AGG + Chr5:13618115-13618134 MsG0580025080.01.T01:CDS 20.0%
!!! ATATAATCACATTCTTTTTC+AGG + Chr5:13616227-13616246 MsG0580025080.01.T01:intron 20.0%
!!! CATTTTAACATTAGAGAATA+AGG - Chr5:13618766-13618785 None:intergenic 20.0%
!!! CTAATATTTATATTTGAGAC+CGG + Chr5:13617444-13617463 MsG0580025080.01.T01:intron 20.0%
!!! GAATATTTTAGATGATTTCT+TGG + Chr5:13615566-13615585 MsG0580025080.01.T01:CDS 20.0%
!!! TAAGAAAAATAGGTTGTTTT+TGG + Chr5:13617108-13617127 MsG0580025080.01.T01:intron 20.0%
!!! TATATTCATTAGTTTTAGGT+TGG - Chr5:13618389-13618408 None:intergenic 20.0%
!!! TCATAGTCAAATTTGTTTAA+GGG - Chr5:13617159-13617178 None:intergenic 20.0%
!!! TGTTTTAATTTATATAGGTG+CGG + Chr5:13619291-13619310 MsG0580025080.01.T01:intron 20.0%
!!! TTCATAGTCAAATTTGTTTA+AGG - Chr5:13617160-13617179 None:intergenic 20.0%
!!! TTTAAATTTTTTGCTTCTTC+GGG - Chr5:13617773-13617792 None:intergenic 20.0%
!!! TTTTGATAATACTATTCTTC+AGG + Chr5:13616392-13616411 MsG0580025080.01.T01:intron 20.0%
!!! TTTTGTAGATGATATTGTAA+AGG - Chr5:13616784-13616803 None:intergenic 20.0%
! AAATCATATAGGGAGAAAAA+TGG + Chr5:13618126-13618145 MsG0580025080.01.T01:CDS 25.0%
! AAGTGCAATTTAGCAAAATA+TGG - Chr5:13617949-13617968 None:intergenic 25.0%
! AATATGCATTGAAAGTCATT+TGG - Chr5:13616602-13616621 None:intergenic 25.0%
! ACACCAAACTTAGAATAATA+TGG - Chr5:13618201-13618220 None:intergenic 25.0%
! ACATAGAAAATCCAAACAAT+GGG + Chr5:13615736-13615755 MsG0580025080.01.T01:CDS 25.0%
! AGAGTTGAAAAAGAAATTTG+AGG - Chr5:13618534-13618553 None:intergenic 25.0%
! ATATGCATTGAAAGTCATTT+GGG - Chr5:13616601-13616620 None:intergenic 25.0%
! ATCTCAATTGACATTATCAA+AGG - Chr5:13616995-13617014 None:intergenic 25.0%
! ATTATAAGACGCATATTCAA+AGG + Chr5:13619189-13619208 MsG0580025080.01.T01:intron 25.0%
! CATGAAAAATAAGATGGTTA+GGG + Chr5:13617744-13617763 MsG0580025080.01.T01:intron 25.0%
! CTTTCAAAGAAACTTGATAA+AGG + Chr5:13615823-13615842 MsG0580025080.01.T01:intron 25.0%
! GAACAATGGTTAAGTAAAAT+TGG - Chr5:13619263-13619282 None:intergenic 25.0%
! GATGATATTGTAAAGGTTAA+TGG - Chr5:13616777-13616796 None:intergenic 25.0%
! GATGGAAGATTATCAAAATA+AGG - Chr5:13617832-13617851 None:intergenic 25.0%
! TATAGCCATGAAAAATAAGA+TGG + Chr5:13617738-13617757 MsG0580025080.01.T01:intron 25.0%
! TTATGAATGAATATGGCATT+TGG + Chr5:13618790-13618809 MsG0580025080.01.T01:intron 25.0%
!! AAGCATAATAATGGAATTCA+TGG + Chr5:13618684-13618703 MsG0580025080.01.T01:CDS 25.0%
!! ACATTCAACTATGAAGTTTT+TGG + Chr5:13616091-13616110 MsG0580025080.01.T01:intron 25.0%
!! ATGTGGATTATGAATGAATA+TGG + Chr5:13618783-13618802 MsG0580025080.01.T01:intron 25.0%
!! CAAGTTTCTTTGAAAGAATA+CGG - Chr5:13615819-13615838 None:intergenic 25.0%
!! TATGATTTTGGATCATAAAG+AGG - Chr5:13618114-13618133 None:intergenic 25.0%
!! TTTTTCTCCCTATATGATTT+TGG - Chr5:13618126-13618145 None:intergenic 25.0%
!!! TCAAAGTTTTTCGAATTCAT+GGG + Chr5:13618986-13619005 MsG0580025080.01.T01:CDS 25.0%
!!! TTCAAAGTTTTTCGAATTCA+TGG + Chr5:13618985-13619004 MsG0580025080.01.T01:CDS 25.0%
!!! TTTTTGGTAACATTTTCAGA+AGG + Chr5:13616107-13616126 MsG0580025080.01.T01:intron 25.0%
AAGCTACTAATCGTAAGTTA+AGG + Chr5:13618322-13618341 MsG0580025080.01.T01:CDS 30.0%
ACTTTGAATCCATATTTCTC+AGG - Chr5:13618973-13618992 None:intergenic 30.0%
AGGATTTCAACAAAAGCTTT+AGG - Chr5:13615880-13615899 None:intergenic 30.0%
ATAGAAGATCAAACAATTGC+GGG - Chr5:13618947-13618966 None:intergenic 30.0%
ATGCTCAGACTATTATTAGA+AGG + Chr5:13616322-13616341 MsG0580025080.01.T01:intron 30.0%
ATTAAGAAACTTGGACCTAA+AGG + Chr5:13617376-13617395 MsG0580025080.01.T01:intron 30.0%
ATTAGCATGGGAGAATTAAA+GGG + Chr5:13618717-13618736 MsG0580025080.01.T01:CDS 30.0%
CATAGAAGATCAAACAATTG+CGG - Chr5:13618948-13618967 None:intergenic 30.0%
CCATGAAAAATAAGATGGTT+AGG + Chr5:13617743-13617762 MsG0580025080.01.T01:intron 30.0%
GACATAGAAAATCCAAACAA+TGG + Chr5:13615735-13615754 MsG0580025080.01.T01:CDS 30.0%
GAGCCATATTATTCTAAGTT+TGG + Chr5:13618195-13618214 MsG0580025080.01.T01:CDS 30.0%
GTAAATGTGTGTGCAAAAAT+TGG + Chr5:13617905-13617924 MsG0580025080.01.T01:CDS 30.0%
TAACATTAGAGAATAAGGTC+CGG - Chr5:13618761-13618780 None:intergenic 30.0%
TACTAATCGTAAGTTAAGGA+CGG + Chr5:13618326-13618345 MsG0580025080.01.T01:CDS 30.0%
TATTAGCATGGGAGAATTAA+AGG + Chr5:13618716-13618735 MsG0580025080.01.T01:CDS 30.0%
TGCAAATCACTAAAGGAATT+CGG - Chr5:13618269-13618288 None:intergenic 30.0%
TTCTAATAATAGTCTGAGCA+TGG - Chr5:13616323-13616342 None:intergenic 30.0%
TTCTATGAACCTGAGAAATA+TGG + Chr5:13618961-13618980 MsG0580025080.01.T01:CDS 30.0%
TTGAATATTCACTCAAGGTA+CGG + Chr5:13619093-13619112 MsG0580025080.01.T01:intron 30.0%
TTGCACACACATTTACAAAT+GGG - Chr5:13617901-13617920 None:intergenic 30.0%
TTTGCACACACATTTACAAA+TGG - Chr5:13617902-13617921 None:intergenic 30.0%
! GTGTTTGGAAAGCATAATAA+TGG + Chr5:13618675-13618694 MsG0580025080.01.T01:CDS 30.0%
! GTTTTCTTTACATTTGTGAC+CGG + Chr5:13618739-13618758 MsG0580025080.01.T01:intron 30.0%
! TATTTATATTTGAGACCGGA+TGG + Chr5:13617448-13617467 MsG0580025080.01.T01:intron 30.0%
! TTCTAGTTGTACATGTCTAA+GGG - Chr5:13616191-13616210 None:intergenic 30.0%
!! AAACAGTATTGACACATTGT+TGG + Chr5:13616626-13616645 MsG0580025080.01.T01:intron 30.0%
!! CCTTCTTCAAAGTGTTTTAT+CGG - Chr5:13618901-13618920 None:intergenic 30.0%
!! TTTCTAGTTGTACATGTCTA+AGG - Chr5:13616192-13616211 None:intergenic 30.0%
!!! CCTAACCATCTTATTTTTCA+TGG - Chr5:13617746-13617765 None:intergenic 30.0%
!!! GACTATGAATGCTATTTTGT+TGG + Chr5:13617171-13617190 MsG0580025080.01.T01:intron 30.0%
!!! TAATCACATTCTTTTTCAGG+AGG + Chr5:13616230-13616249 MsG0580025080.01.T01:intron 30.0%
AAAAATGGCGAGGACAATTA+TGG + Chr5:13618141-13618160 MsG0580025080.01.T01:CDS 35.0%
AAAATGGCGAGGACAATTAT+GGG + Chr5:13618142-13618161 MsG0580025080.01.T01:CDS 35.0%
AAAGAAGAAAGATGGTTACG+TGG + Chr5:13616945-13616964 MsG0580025080.01.T01:intron 35.0%
AACTTACGATTAGTAGCTTC+AGG - Chr5:13618321-13618340 None:intergenic 35.0%
AACTTGCATCTCAAGAAACT+TGG - Chr5:13617424-13617443 None:intergenic 35.0%
AAGTATCCCACTTATGTGAA+TGG + Chr5:13618555-13618574 MsG0580025080.01.T01:CDS 35.0%
ACGAAAGTCTTTGTAAGTGT+TGG - Chr5:13616753-13616772 None:intergenic 35.0%
ACGGATGTGATAAGAATGAA+AGG + Chr5:13618345-13618364 MsG0580025080.01.T01:CDS 35.0%
ACTTCAACATTTCTCCATGA+TGG - Chr5:13618507-13618526 None:intergenic 35.0%
ATAAGAATGAAAGGAGTAGC+TGG + Chr5:13618354-13618373 MsG0580025080.01.T01:CDS 35.0%
ATATGGCATTTGGAGAATCA+TGG + Chr5:13618800-13618819 MsG0580025080.01.T01:intron 35.0%
ATATTCAAAGGAACATGCGT+AGG + Chr5:13619201-13619220 MsG0580025080.01.T01:intron 35.0%
ATCAAAAGACCAAGAACCAT+TGG - Chr5:13616379-13616398 None:intergenic 35.0%
ATCCTTGAGATAAACACACT+TGG + Chr5:13618477-13618496 MsG0580025080.01.T01:CDS 35.0%
CAAAATCCTGAAGACAAGAA+CGG - Chr5:13617023-13617042 None:intergenic 35.0%
CATAAAACACGACTTTCTGA+AGG - Chr5:13618859-13618878 None:intergenic 35.0%
CCAAAATTATCTTGAGAGAG+TGG + Chr5:13616162-13616181 MsG0580025080.01.T01:intron 35.0%
CCAAATCAACATAATCCTCA+TGG - Chr5:13616005-13616024 None:intergenic 35.0%
CGAAAGTCTTTGTAAGTGTT+GGG - Chr5:13616752-13616771 None:intergenic 35.0%
CTAAAGGAATTCGGTTGAAT+TGG - Chr5:13618260-13618279 None:intergenic 35.0%
CTTCATTGGATCAGATTTGA+AGG + Chr5:13618582-13618601 MsG0580025080.01.T01:CDS 35.0%
GAAAAGTTTGATGTTCAGTG+TGG + Chr5:13615609-13615628 MsG0580025080.01.T01:CDS 35.0%
GATTTATCATCTACTCCATC+CGG - Chr5:13617466-13617485 None:intergenic 35.0%
GCGGGGATGATATAATAATA+TGG - Chr5:13618929-13618948 None:intergenic 35.0%
GTTCCTATTGACATCATCTA+AGG - Chr5:13616505-13616524 None:intergenic 35.0%
TAACAGGCAAAAAACTGCTT+TGG - Chr5:13616868-13616887 None:intergenic 35.0%
TAGAAGATCAAACAATTGCG+GGG - Chr5:13618946-13618965 None:intergenic 35.0%
TCAAAAGACCAAGAACCATT+GGG - Chr5:13616378-13616397 None:intergenic 35.0%
TCAAACAATCTGTTGAGACA+GGG - Chr5:13619352-13619371 None:intergenic 35.0%
TCCAAGTCTAATCTCATTGA+AGG + Chr5:13619047-13619066 MsG0580025080.01.T01:CDS 35.0%
TCCTTCAATGAGATTAGACT+TGG - Chr5:13619051-13619070 None:intergenic 35.0%
TGGAAGAAAATCCAAAAGTG+AGG + Chr5:13615706-13615725 MsG0580025080.01.T01:CDS 35.0%
TTATGCTTTCCAAACACATC+TGG - Chr5:13618672-13618691 None:intergenic 35.0%
! ATTTGGAGAATCATGGACTA+AGG + Chr5:13618807-13618826 MsG0580025080.01.T01:intron 35.0%
! CCACTCTCTCAAGATAATTT+TGG - Chr5:13616165-13616184 None:intergenic 35.0%
! CCATGAGGATTATGTTGATT+TGG + Chr5:13616002-13616021 MsG0580025080.01.T01:intron 35.0%
! CCGATAAAACACTTTGAAGA+AGG + Chr5:13618898-13618917 MsG0580025080.01.T01:CDS 35.0%
! CTATTGACATCATCTAAGGT+GGG - Chr5:13616501-13616520 None:intergenic 35.0%
! CTTCAGAAAGTCGTGTTTTA+TGG + Chr5:13618857-13618876 MsG0580025080.01.T01:CDS 35.0%
! CTTTTGTTGAAATCCTTTGC+AGG + Chr5:13615884-13615903 MsG0580025080.01.T01:intron 35.0%
! GAAAGTCTTTGTAAGTGTTG+GGG - Chr5:13616751-13616770 None:intergenic 35.0%
! GATGATGGTTACCACATAAA+AGG - Chr5:13616443-13616462 None:intergenic 35.0%
! GGTGAAAAGTGTATTAGCAT+GGG + Chr5:13618705-13618724 MsG0580025080.01.T01:CDS 35.0%
! GTTTCTTTGAAAGAATACGG+AGG - Chr5:13615816-13615835 None:intergenic 35.0%
! TATTGACATCATCTAAGGTG+GGG - Chr5:13616500-13616519 None:intergenic 35.0%
! TGGTGAAAAGTGTATTAGCA+TGG + Chr5:13618704-13618723 MsG0580025080.01.T01:CDS 35.0%
! TGGTGTTGAATATTCACTCA+AGG + Chr5:13619088-13619107 MsG0580025080.01.T01:CDS 35.0%
!! AAAGTCTTTGTAAGTGTTGG+GGG - Chr5:13616750-13616769 None:intergenic 35.0%
!!! AAGCAGTTTTTTGCCTGTTA+AGG + Chr5:13616868-13616887 MsG0580025080.01.T01:intron 35.0%
!!! AGCAGTTTTTTGCCTGTTAA+GGG + Chr5:13616869-13616888 MsG0580025080.01.T01:intron 35.0%
!!! CGTCACTTCTTTTTGGTTAT+GGG - Chr5:13616540-13616559 None:intergenic 35.0%
!!! GTCACTTCTTTTTGGTTATG+GGG - Chr5:13616539-13616558 None:intergenic 35.0%
!!! TCGTCACTTCTTTTTGGTTA+TGG - Chr5:13616541-13616560 None:intergenic 35.0%
!!! TGACACTAGTTTTTTGTCAC+AGG - Chr5:13618004-13618023 None:intergenic 35.0%
!!! TTTTTCAGGAGGAAATGCAT+TGG + Chr5:13616241-13616260 MsG0580025080.01.T01:intron 35.0%
AAATGCTCTCTGCAAGGTTA+GGG + Chr5:13616057-13616076 MsG0580025080.01.T01:intron 40.0%
AAATGGCGAGGACAATTATG+GGG + Chr5:13618143-13618162 MsG0580025080.01.T01:CDS 40.0%
AACACAATGCATGATGAGAG+CGG - Chr5:13617064-13617083 None:intergenic 40.0%
AAGGCTTAGCTAATGTAGCT+TGG + Chr5:13615842-13615861 MsG0580025080.01.T01:intron 40.0%
AAGTGCACCATTCACATAAG+TGG - Chr5:13618565-13618584 None:intergenic 40.0%
ACAAATGGGAAGAGACTTGA+TGG - Chr5:13617887-13617906 None:intergenic 40.0%
ACACTCATGTCCACTATAGA+AGG + Chr5:13615760-13615779 MsG0580025080.01.T01:intron 40.0%
ACATGAGTGTACCCATTGTT+TGG - Chr5:13615750-13615769 None:intergenic 40.0%
AGAGTTGAGAACAGGCTTAA+GGG + Chr5:13616136-13616155 MsG0580025080.01.T01:intron 40.0%
AGGAAATGACTGCAATCTCT+CGG - Chr5:13618643-13618662 None:intergenic 40.0%
AGGCAAAAAACTGCTTTGGT+AGG - Chr5:13616864-13616883 None:intergenic 40.0%
AGTGAAACGACCTTCTATAG+TGG - Chr5:13615773-13615792 None:intergenic 40.0%
AGTGCACCATTCACATAAGT+GGG - Chr5:13618564-13618583 None:intergenic 40.0%
ATATAGGGAGAAAAATGGCG+AGG + Chr5:13618131-13618150 MsG0580025080.01.T01:CDS 40.0%
ATCTGTAAGGCTTCATGGAA+TGG - Chr5:13616571-13616590 None:intergenic 40.0%
ATGTGAATGGTGCACTTCAT+TGG + Chr5:13618568-13618587 MsG0580025080.01.T01:CDS 40.0%
ATTATGGGGATCATCGTCAA+TGG + Chr5:13618157-13618176 MsG0580025080.01.T01:CDS 40.0%
ATTGAAAGTCATTTGGGCCT+GGG - Chr5:13616595-13616614 None:intergenic 40.0%
CAAATGGGAAGAGACTTGAT+GGG - Chr5:13617886-13617905 None:intergenic 40.0%
CAAGCGGCTTAAAATCCAAA+AGG - Chr5:13615976-13615995 None:intergenic 40.0%
CAATCTCTTCTGTGTCATAG+AGG - Chr5:13615392-13615411 None:intergenic 40.0%
CCACCTTAGATGATGTCAAT+AGG + Chr5:13616499-13616518 MsG0580025080.01.T01:intron 40.0%
CCTATTGACATCATCTAAGG+TGG - Chr5:13616502-13616521 None:intergenic 40.0%
CGCATGTCAAAGAAGAAAGA+TGG + Chr5:13616937-13616956 MsG0580025080.01.T01:intron 40.0%
CGGAAAGTTTAAATTGCAGG+AGG + Chr5:13619311-13619330 MsG0580025080.01.T01:CDS 40.0%
CTATAGAAGGTCGTTTCACT+TGG + Chr5:13615773-13615792 MsG0580025080.01.T01:intron 40.0%
CTCCAAGTGTGTTTATCTCA+AGG - Chr5:13618482-13618501 None:intergenic 40.0%
GAATCCATGCAAGTTCCTTT+AGG - Chr5:13617394-13617413 None:intergenic 40.0%
GAGATTAGACTTGGAACATG+TGG - Chr5:13619042-13619061 None:intergenic 40.0%
GATCAGAATGTAACCTGCAA+AGG - Chr5:13615900-13615919 None:intergenic 40.0%
GCAAAACAATGCATTGTCAG+TGG - Chr5:13616897-13616916 None:intergenic 40.0%
GCTTAAAATCCAAAAGGCCT+AGG - Chr5:13615970-13615989 None:intergenic 40.0%
GGAATAAGAGAGTTGAGAAC+AGG + Chr5:13616128-13616147 MsG0580025080.01.T01:intron 40.0%
GGCAAAAAACTGCTTTGGTA+GGG - Chr5:13616863-13616882 None:intergenic 40.0%
GGGAAGTTTAAGCAGAATGT+GGG - Chr5:13617866-13617885 None:intergenic 40.0%
GTCCGAATCATGAGACTAAT+TGG - Chr5:13617982-13618001 None:intergenic 40.0%
GTCCTCAAACTAACAGAGTT+CGG + Chr5:13617534-13617553 MsG0580025080.01.T01:intron 40.0%
GTGCGGAAAGTTTAAATTGC+AGG + Chr5:13619308-13619327 MsG0580025080.01.T01:CDS 40.0%
GTTGTGGTTAGAAGAACTAC+AGG - Chr5:13616037-13616056 None:intergenic 40.0%
TAAAGAGGAAGCTTGGACAT+AGG - Chr5:13618099-13618118 None:intergenic 40.0%
TCATTGAAGGATGTCGTGAA+AGG + Chr5:13619060-13619079 MsG0580025080.01.T01:CDS 40.0%
TCCAGTGAAAGTAAGTACCT+TGG - Chr5:13617567-13617586 None:intergenic 40.0%
TGGATCATAAAGAGGAAGCT+TGG - Chr5:13618106-13618125 None:intergenic 40.0%
TGGGAAGTTTAAGCAGAATG+TGG - Chr5:13617867-13617886 None:intergenic 40.0%
TTTCAGGATCACACTCAAGA+AGG - Chr5:13618038-13618057 None:intergenic 40.0%
! ATGTCAACACTCCTCACTTT+TGG - Chr5:13615720-13615739 None:intergenic 40.0%
! CACATTGCTCTCGAGATTTT+TGG - Chr5:13616269-13616288 None:intergenic 40.0%
! CGCCAATTAGTCTCATGATT+CGG + Chr5:13617977-13617996 MsG0580025080.01.T01:CDS 40.0%
! CGTTCTTGTCTTCAGGATTT+TGG + Chr5:13617021-13617040 MsG0580025080.01.T01:intron 40.0%
! CTTCCAGTCTCAAACTTTTC+AGG - Chr5:13618054-13618073 None:intergenic 40.0%
! CTTTTGGATTTTAAGCCGCT+TGG + Chr5:13615974-13615993 MsG0580025080.01.T01:intron 40.0%
! GACAACAAAATCTCGAGTTG+TGG + Chr5:13615462-13615481 MsG0580025080.01.T01:CDS 40.0%
! GATCCTGAAAAGTTTGAGAC+TGG + Chr5:13618048-13618067 MsG0580025080.01.T01:CDS 40.0%
! GGTGTTGTGAATTCTTGCAA+TGG + Chr5:13618216-13618235 MsG0580025080.01.T01:CDS 40.0%
! TAGGTTTAAGGCGATGAACA+AGG - Chr5:13616820-13616839 None:intergenic 40.0%
! TCCAAGGTACTTACTTTCAC+TGG + Chr5:13617563-13617582 MsG0580025080.01.T01:intron 40.0%
! TGATGGTGAAGGAAAGAAAG+AGG + Chr5:13615512-13615531 MsG0580025080.01.T01:CDS 40.0%
! TTCCGAACTCTGTTAGTTTG+AGG - Chr5:13617539-13617558 None:intergenic 40.0%
! TTTTCTCCGTTCTTGTCTTC+AGG + Chr5:13617014-13617033 MsG0580025080.01.T01:intron 40.0%
!! AAGTCTTTGTAAGTGTTGGG+GGG - Chr5:13616749-13616768 None:intergenic 40.0%
!! AGGATTCAACGAAGTATCGA+TGG - Chr5:13618839-13618858 None:intergenic 40.0%
!! AGTGGGTTGCAAATCACTAA+AGG - Chr5:13618276-13618295 None:intergenic 40.0%
!! ATGAAAGGAGTAGCTGGTTT+TGG + Chr5:13618360-13618379 MsG0580025080.01.T01:CDS 40.0%
AACTTAAACCTGCCCTTGAC+TGG + Chr5:13618439-13618458 MsG0580025080.01.T01:CDS 45.0%
AAGGCGATGAACAAGGACTT+TGG - Chr5:13616813-13616832 None:intergenic 45.0%
ACACACTTGGAGAACCATCA+TGG + Chr5:13618490-13618509 MsG0580025080.01.T01:CDS 45.0%
ACTTAAACCTGCCCTTGACT+GGG + Chr5:13618440-13618459 MsG0580025080.01.T01:CDS 45.0%
AGTTGAGAACAGGCTTAAGG+GGG + Chr5:13616138-13616157 MsG0580025080.01.T01:intron 45.0%
ATCCTCATGGTCAATCCAAG+CGG - Chr5:13615992-13616011 None:intergenic 45.0%
ATGAGAGCGGTAGTAACATC+AGG - Chr5:13617051-13617070 None:intergenic 45.0%
CAAATGCTCTCTGCAAGGTT+AGG + Chr5:13616056-13616075 MsG0580025080.01.T01:intron 45.0%
CACAACAAATGCTCTCTGCA+AGG + Chr5:13616051-13616070 MsG0580025080.01.T01:intron 45.0%
CATTGAAAGTCATTTGGGCC+TGG - Chr5:13616596-13616615 None:intergenic 45.0%
CTAAGGGAAGACCACCAAAA+CGG - Chr5:13615939-13615958 None:intergenic 45.0%
CTTTATGAGGCGAATCAACC+AGG + Chr5:13615486-13615505 MsG0580025080.01.T01:CDS 45.0%
GAGAGTTGAGAACAGGCTTA+AGG + Chr5:13616135-13616154 MsG0580025080.01.T01:intron 45.0%
GAGTTGAGAACAGGCTTAAG+GGG + Chr5:13616137-13616156 MsG0580025080.01.T01:intron 45.0%
GATGGAGATTGAGTGTCACA+AGG + Chr5:13615677-13615696 MsG0580025080.01.T01:CDS 45.0%
GATTGAGTGTCACAAGGTTG+TGG + Chr5:13615683-13615702 MsG0580025080.01.T01:CDS 45.0%
GCTTAGCTAATGTAGCTTGG+CGG + Chr5:13615845-13615864 MsG0580025080.01.T01:intron 45.0%
GGAACTTGCATGGATTCTTG+AGG + Chr5:13617397-13617416 MsG0580025080.01.T01:intron 45.0%
GTAAGGCTTCATGGAATGGA+GGG - Chr5:13616567-13616586 None:intergenic 45.0%
TAAGCAGAATGTGGGTAGTG+AGG - Chr5:13617858-13617877 None:intergenic 45.0%
TGAGAGCGGTAGTAACATCA+GGG - Chr5:13617050-13617069 None:intergenic 45.0%
TGCTTTCCAAACACATCTGG+CGG - Chr5:13618669-13618688 None:intergenic 45.0%
TGGACCTAAAGGAACTTGCA+TGG + Chr5:13617387-13617406 MsG0580025080.01.T01:intron 45.0%
TGTAAGGCTTCATGGAATGG+AGG - Chr5:13616568-13616587 None:intergenic 45.0%
TTATGAACTCCCCAGTGAGT+GGG - Chr5:13618293-13618312 None:intergenic 45.0%
TTCAGCTTCCCAATGGTTCT+TGG + Chr5:13616367-13616386 MsG0580025080.01.T01:intron 45.0%
TTGAAAGTCATTTGGGCCTG+GGG - Chr5:13616594-13616613 None:intergenic 45.0%
TTTCCTTCACCATCACTACC+TGG - Chr5:13615507-13615526 None:intergenic 45.0%
! AGAAAGCACATGAGTCTCAG+AGG + Chr5:13615643-13615662 MsG0580025080.01.T01:CDS 45.0%
! CAGAGTTCGGAACTTTTCCA+AGG + Chr5:13617547-13617566 MsG0580025080.01.T01:intron 45.0%
! CGTGGTTTTCGTGAAGATGA+TGG - Chr5:13616458-13616477 None:intergenic 45.0%
! CTCGAGTTGTGGTCTTTATG+AGG + Chr5:13615473-13615492 MsG0580025080.01.T01:CDS 45.0%
! GGGAGATCGTCACTTCTTTT+TGG - Chr5:13616547-13616566 None:intergenic 45.0%
! TAGTTTGAGGACAAGAGCGT+TGG - Chr5:13617526-13617545 None:intergenic 45.0%
! TGATTTGCAACCCACTCACT+GGG + Chr5:13618280-13618299 MsG0580025080.01.T01:CDS 45.0%
! TTTGGTTATGGGGCTAGTGA+GGG - Chr5:13616529-13616548 None:intergenic 45.0%
!! AGTCTTTGTAAGTGTTGGGG+GGG - Chr5:13616748-13616767 None:intergenic 45.0%
!! CATGGGATTAGTCGTTCAGA+AGG + Chr5:13619003-13619022 MsG0580025080.01.T01:CDS 45.0%
!! CTTGCAGAGAGCATTTGTTG+TGG - Chr5:13616053-13616072 None:intergenic 45.0%
!! TTTTGGTTATGGGGCTAGTG+AGG - Chr5:13616530-13616549 None:intergenic 45.0%
!! TATAAATTAAAACAATATTA+AGG - Chr5:13619285-13619304 None:intergenic 5.0%
!! TATATATATATAAGAAAAAT+AGG + Chr5:13617098-13617117 MsG0580025080.01.T01:intron 5.0%
!!! AAATTAATTATGATTTTTAA+GGG - Chr5:13619167-13619186 None:intergenic 5.0%
!!! AATATTGTTTTAATTTATAT+AGG + Chr5:13619286-13619305 MsG0580025080.01.T01:intron 5.0%
!!! TATTATATTTTTTATATTGT+TGG + Chr5:13617248-13617267 MsG0580025080.01.T01:intron 5.0%
ACATGAGTCTCAGAGGAAGC+TGG + Chr5:13615650-13615669 MsG0580025080.01.T01:CDS 50.0%
ACGCTCAAACACCCAGTCAA+GGG - Chr5:13618454-13618473 None:intergenic 50.0%
ACTTGGCACCGCAACAACAA+CGG + Chr5:13615790-13615809 MsG0580025080.01.T01:intron 50.0%
ATGAAGCCTTACAGATCCCC+AGG + Chr5:13616575-13616594 MsG0580025080.01.T01:intron 50.0%
ATGTGGGTAGTGAGGTGAGA+TGG - Chr5:13617850-13617869 None:intergenic 50.0%
CACAAGCTTCAGCTTCCCAA+TGG + Chr5:13616360-13616379 MsG0580025080.01.T01:intron 50.0%
CACGAAAACCACGCTTCCAA+TGG + Chr5:13616465-13616484 MsG0580025080.01.T01:intron 50.0%
CATTGGGAAGCTGAAGCTTG+TGG - Chr5:13616362-13616381 None:intergenic 50.0%
CTTAGGGATGAGGGCTATGA+GGG - Chr5:13616720-13616739 None:intergenic 50.0%
CTTATGAACTCCCCAGTGAG+TGG - Chr5:13618294-13618313 None:intergenic 50.0%
GAAAACCACGCTTCCAATGG+AGG + Chr5:13616468-13616487 MsG0580025080.01.T01:intron 50.0%
GATGGATGGGTCCTAATAGC+CGG - Chr5:13616690-13616709 None:intergenic 50.0%
GATTTGCAACCCACTCACTG+GGG + Chr5:13618281-13618300 MsG0580025080.01.T01:CDS 50.0%
GCGAATCAACCAGGTAGTGA+TGG + Chr5:13615495-13615514 MsG0580025080.01.T01:CDS 50.0%
GGATGTCGTGAAAGGAGACA+TGG + Chr5:13619068-13619087 MsG0580025080.01.T01:CDS 50.0%
GGGGTTAACCTTAGGGATGA+GGG - Chr5:13616729-13616748 None:intergenic 50.0%
TGAGTGTCACAAGGTTGTGG+TGG + Chr5:13615686-13615705 MsG0580025080.01.T01:CDS 50.0%
TGGGGATCTGTAAGGCTTCA+TGG - Chr5:13616576-13616595 None:intergenic 50.0%
TGTTGGGGGGGTTAACCTTA+GGG - Chr5:13616736-13616755 None:intergenic 50.0%
TTGTCAGTGGTGCCCTTAAC+AGG - Chr5:13616884-13616903 None:intergenic 50.0%
! AACCTTCTCCTCGTCCGTTT+TGG + Chr5:13615922-13615941 MsG0580025080.01.T01:intron 50.0%
! CAACCAGGTAGTGATGGTGA+AGG + Chr5:13615501-13615520 MsG0580025080.01.T01:CDS 50.0%
! GATCACACTCAAGAAGGTGC+AGG - Chr5:13618032-13618051 None:intergenic 50.0%
! GTGATTTGCAACCCACTCAC+TGG + Chr5:13618279-13618298 MsG0580025080.01.T01:CDS 50.0%
! TCAGAGGAAGCTGGTTCAGA+TGG + Chr5:13615659-13615678 MsG0580025080.01.T01:CDS 50.0%
! TGACATCATCTAAGGTGGGG+TGG - Chr5:13616497-13616516 None:intergenic 50.0%
!! ATGAGGGTGTCAGAGATGGA+TGG - Chr5:13616704-13616723 None:intergenic 50.0%
!! TGAGGGTGTCAGAGATGGAT+GGG - Chr5:13616703-13616722 None:intergenic 50.0%
AGCCGCTTGGATTGACCATG+AGG + Chr5:13615987-13616006 MsG0580025080.01.T01:intron 55.0%
ATGGGTCCTAATAGCCGGTG+TGG - Chr5:13616685-13616704 None:intergenic 55.0%
CACCAAAACGGACGAGGAGA+AGG - Chr5:13615927-13615946 None:intergenic 55.0%
CACGCTCAAACACCCAGTCA+AGG - Chr5:13618455-13618474 None:intergenic 55.0%
CCAAACACATCTGGCGGAGA+AGG - Chr5:13618663-13618682 None:intergenic 55.0%
CCTCATAGCCCTCATCCCTA+AGG + Chr5:13616718-13616737 MsG0580025080.01.T01:intron 55.0%
CCTTAGGGATGAGGGCTATG+AGG - Chr5:13616721-13616740 None:intergenic 55.0%
CCTTCTCCGCCAGATGTGTT+TGG + Chr5:13618660-13618679 MsG0580025080.01.T01:CDS 55.0%
GAAGACCACCAAAACGGACG+AGG - Chr5:13615933-13615952 None:intergenic 55.0%
GGGGGTTAACCTTAGGGATG+AGG - Chr5:13616730-13616749 None:intergenic 55.0%
GTCCTAATAGCCGGTGTGGA+AGG - Chr5:13616681-13616700 None:intergenic 55.0%
GTGGTCTTCCCTTAGCCAGA+GGG + Chr5:13615944-13615963 MsG0580025080.01.T01:intron 55.0%
GTGTTGGGGGGGTTAACCTT+AGG - Chr5:13616737-13616756 None:intergenic 55.0%
GTTCACTCAGCCTTCCACAC+CGG + Chr5:13616668-13616687 MsG0580025080.01.T01:intron 55.0%
TCAAACACCCAGTCAAGGGC+AGG - Chr5:13618450-13618469 None:intergenic 55.0%
TTTGGGCCTGGGGATCTGTA+AGG - Chr5:13616584-13616603 None:intergenic 55.0%
! AGCCTTCCACACCGGCTATT+AGG + Chr5:13616676-13616695 MsG0580025080.01.T01:intron 55.0%
! CTTCTCCTCGTCCGTTTTGG+TGG + Chr5:13615925-13615944 MsG0580025080.01.T01:intron 55.0%
! TACGGAGGCCGTTGTTGTTG+CGG - Chr5:13615801-13615820 None:intergenic 55.0%
!! GGCTATGAGGGTGTCAGAGA+TGG - Chr5:13616708-13616727 None:intergenic 55.0%
GGTGGTCTTCCCTTAGCCAG+AGG + Chr5:13615943-13615962 MsG0580025080.01.T01:intron 60.0%
TCCAAAAGGCCTAGGCCCTC+TGG - Chr5:13615962-13615981 None:intergenic 60.0%
TTCCCTTAGCCAGAGGGCCT+AGG + Chr5:13615950-13615969 MsG0580025080.01.T01:intron 60.0%
AGGCCTAGGCCCTCTGGCTA+AGG - Chr5:13615956-13615975 None:intergenic 65.0%
GGCCTAGGCCCTCTGGCTAA+GGG - Chr5:13615955-13615974 None:intergenic 65.0%
GGCTGCCTCCATTGGAAGCG+TGG - Chr5:13616476-13616495 None:intergenic 65.0%
! GCCAGAGGGCCTAGGCCTTT+TGG + Chr5:13615958-13615977 MsG0580025080.01.T01:intron 65.0%
GGTGGGGTGGCTGCCTCCAT+TGG - Chr5:13616484-13616503 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 13615372 13619371 13615372 ID=MsG0580025080.01;Name=MsG0580025080.01
Chr5 mRNA 13615372 13619371 13615372 ID=MsG0580025080.01.T01;Parent=MsG0580025080.01;Name=MsG0580025080.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.75|1|1|4|0|572
Chr5 exon 13615372 13615757 13615372 ID=MsG0580025080.01.T01:exon:5542;Parent=MsG0580025080.01.T01
Chr5 exon 13617765 13618738 13617765 ID=MsG0580025080.01.T01:exon:5543;Parent=MsG0580025080.01.T01
Chr5 exon 13618815 13619109 13618815 ID=MsG0580025080.01.T01:exon:5544;Parent=MsG0580025080.01.T01
Chr5 exon 13619308 13619371 13619308 ID=MsG0580025080.01.T01:exon:5545;Parent=MsG0580025080.01.T01
Chr5 CDS 13615372 13615757 13615372 ID=MsG0580025080.01.T01:cds;Parent=MsG0580025080.01.T01
Chr5 CDS 13617765 13618738 13617765 ID=MsG0580025080.01.T01:cds;Parent=MsG0580025080.01.T01
Chr5 CDS 13618815 13619109 13618815 ID=MsG0580025080.01.T01:cds;Parent=MsG0580025080.01.T01
Chr5 CDS 13619308 13619371 13619308 ID=MsG0580025080.01.T01:cds;Parent=MsG0580025080.01.T01
Gene Sequence

>MsG0580025080.01.T01

ATGATAGACAGGGTACTCCTCTATGACACAGAAGAGATTGCTAAGTTGCAGTATGAAAAATATATGCTATCTTTTAAGATCAAAATTTTGGACAACAAAATCTCGAGTTGTGGTCTTTATGAGGCGAATCAACCAGGTAGTGATGGTGAAGGAAAGAAAGAGGTGATCAACATCGATTACAATACTCAACTTCAGAATATTTTAGATGATTTCTTGGTGTCAAATCAAGTTTTATTTGAAAAGTTTGATGTTCAGTGTGGTGATCTTGTTAAGAAAGCACATGAGTCTCAGAGGAAGCTGGTTCAGATGGAGATTGAGTGTCACAAGGTTGTGGTGGAAGAAAATCCAAAAGTGAGGAGTGTTGACATAGAAAATCCAAACAATGGGGCTACCCGAAGAAGCAAAAAATTTAAATGGAAAGTTTATAAAGCAGAAAGTCACAAACTTTGCCCTTATTTTGATAATCTTCCATCTCACCTCACTACCCACATTCTGCTTAAACTTCCCATCAAGTCTCTTCCCATTTGTAAATGTGTGTGCAAAAATTGGAAAACACTAATTTCAGAACCATATTTTGCTAAATTGCACTTTGAGCAATCGCCAATTAGTCTCATGATTCGGACCTGTGACAAAAAACTAGTGTCAAGATACCTGCACCTTCTTGAGTGTGATCCTGAAAAGTTTGAGACTGGAAGCAACAATCATGTGAAGCTTACGCCTATGTCCAAGCTTCCTCTTTATGATCCAAAATCATATAGGGAGAAAAATGGCGAGGACAATTATGGGGATCATCGTCAATGGCTTAATATTTATTTCGAGCCATATTATTCTAAGTTTGGTGTTGTGAATTCTTGCAATGGCTTGTTGTGTTTGTGTCACCAATTCAACCGAATTCCTTTAGTGATTTGCAACCCACTCACTGGGGAGTTCATAAGACTTCCTGAAGCTACTAATCGTAAGTTAAGGACGGATGTGATAAGAATGAAAGGAGTAGCTGGTTTTGGTTTCCAACCTAAAACTAATGAATATAAAGTGATAAAAATGTGGATAAGACATGTTAAACTTAAACCTGCCCTTGACTGGGTGTTTGAGCGTGTGATCCTTGAGATAAACACACTTGGAGAACCATCATGGAGAAATGTTGAAGTGAATCCTCAAATTTCTTTTTCAACTCTTAAGTATCCCACTTATGTGAATGGTGCACTTCATTGGATCAGATTTGAAGGTTTGCAAAAGTCAATATTATGTTTCTGTTTTGAAACCGAGAGATTGCAGTCATTTCCTTCTCCGCCAGATGTGTTTGGAAAGCATAATAATGGAATTCATGGTGAAAAGTGTATTAGCATGGGAGAATTAAAGGAATCATGGACTAAGGTTTACACCATCGATACTTCGTTGAATCCTTCAGAAAGTCGTGTTTTATGGCTTTCGAAATTATATTTTCCGATAAAACACTTTGAAGAAGGTGCTGCCATATTATTATATCATCCCCGCAATTGTTTGATCTTCTATGAACCTGAGAAATATGGATTCAAAGTTTTTCGAATTCATGGGATTAGTCGTTCAGAAGGAGTTGAAGTAATTCCACATGTTCCAAGTCTAATCTCATTGAAGGATGTCGTGAAAGGAGACATGGTGTTGAATATTCACTCAAGGTGCGGAAAGTTTAAATTGCAGGAGGTAAATGAAGTTCTTTCCCTGTCTCAACAGATTGTTTGA
Protein sequence

>MsG0580025080.01.T01

MIDRVLLYDTEEIAKLQYEKYMLSFKIKILDNKISSCGLYEANQPGSDGEGKKEVINIDYNTQLQNILDDFLVSNQVLFEKFDVQCGDLVKKAHESQRKLVQMEIECHKVVVEENPKVRSVDIENPNNGATRRSKKFKWKVYKAESHKLCPYFDNLPSHLTTHILLKLPIKSLPICKCVCKNWKTLISEPYFAKLHFEQSPISLMIRTCDKKLVSRYLHLLECDPEKFETGSNNHVKLTPMSKLPLYDPKSYREKNGEDNYGDHRQWLNIYFEPYYSKFGVVNSCNGLLCLCHQFNRIPLVICNPLTGEFIRLPEATNRKLRTDVIRMKGVAGFGFQPKTNEYKVIKMWIRHVKLKPALDWVFERVILEINTLGEPSWRNVEVNPQISFSTLKYPTYVNGALHWIRFEGLQKSILCFCFETERLQSFPSPPDVFGKHNNGIHGEKCISMGELKESWTKVYTIDTSLNPSESRVLWLSKLYFPIKHFEEGAAILLYHPRNCLIFYEPEKYGFKVFRIHGISRSEGVEVIPHVPSLISLKDVVKGDMVLNIHSRCGKFKLQEVNEVLSLSQQIV*