AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043593.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043593.01.T01 MTR_7g078040 85.441 261 37 1 1 261 153 412 9.83e-165 468
MsG0880043593.01.T01 MTR_7g078040 60.227 88 26 2 273 351 181 268 6.30e-21 94.0
MsG0880043593.01.T01 MTR_0242s0060 86.000 250 29 2 1 250 145 388 7.59e-154 439
MsG0880043593.01.T01 MTR_0242s0060 56.627 83 32 2 273 351 173 255 4.25e-16 79.7
MsG0880043593.01.T01 MTR_0242s0040 86.000 250 29 2 1 250 145 388 7.59e-154 439
MsG0880043593.01.T01 MTR_0242s0040 56.627 83 32 2 273 351 173 255 4.25e-16 79.7
MsG0880043593.01.T01 MTR_7g077970 66.045 268 85 3 2 268 146 408 4.67e-119 351
MsG0880043593.01.T01 MTR_7g077970 59.302 86 28 2 273 351 172 257 1.60e-20 92.8
MsG0880043593.01.T01 MTR_7g078840 57.198 257 96 6 2 252 155 403 4.03e-89 275
MsG0880043593.01.T01 MTR_7g078840 51.087 92 32 3 273 351 183 274 1.44e-16 80.9
MsG0880043593.01.T01 MTR_7g079160 53.184 267 102 5 2 263 167 415 1.76e-84 265
MsG0880043593.01.T01 MTR_7g079160 39.130 92 43 3 273 351 190 281 6.41e-11 63.9
MsG0880043593.01.T01 MTR_7g078900 53.409 264 101 6 1 260 157 402 1.43e-82 258
MsG0880043593.01.T01 MTR_7g078900 44.444 90 35 3 273 351 179 264 1.10e-14 75.5
MsG0880043593.01.T01 MTR_4g013185 50.370 270 102 6 1 261 160 406 1.15e-78 248
MsG0880043593.01.T01 MTR_4g013185 48.611 72 30 2 274 339 178 248 2.30e-12 68.2
MsG0880043593.01.T01 MTR_5g058620 50.958 261 106 6 5 261 20 262 2.25e-78 243
MsG0880043593.01.T01 MTR_5g058620 45.055 91 36 4 273 351 35 123 6.11e-15 74.7
MsG0880043593.01.T01 MTR_1g058870 50.958 261 106 6 5 261 20 262 2.25e-78 243
MsG0880043593.01.T01 MTR_1g058870 45.055 91 36 4 273 351 35 123 6.11e-15 74.7
MsG0880043593.01.T01 MTR_4g013175 51.311 267 104 5 1 261 160 406 2.31e-78 247
MsG0880043593.01.T01 MTR_4g013180 49.811 265 110 7 1 260 136 382 1.30e-75 241
MsG0880043593.01.T01 MTR_4g013180 44.565 92 38 4 273 351 157 248 1.03e-11 66.2
MsG0880043593.01.T01 MTR_7g077990 55.708 219 82 3 41 256 169 375 1.64e-74 236
MsG0880043593.01.T01 MTR_7g077990 40.217 92 42 3 273 351 156 247 2.91e-12 67.8
MsG0880043593.01.T01 MTR_7g078860 53.975 239 91 7 19 251 154 379 3.11e-74 235
MsG0880043593.01.T01 MTR_7g078860 43.333 90 36 3 273 351 166 251 5.15e-13 70.1
MsG0880043593.01.T01 MTR_3g013470 52.564 234 95 5 29 260 138 357 7.62e-72 229
MsG0880043593.01.T01 MTR_7g077070 47.350 283 122 11 2 276 159 422 2.58e-69 224
MsG0880043593.01.T01 MTR_7g077070 47.191 89 37 3 273 351 182 270 8.50e-15 75.9
MsG0880043593.01.T01 MTR_1g088120 50.407 246 104 5 23 261 157 391 3.60e-69 223
MsG0880043593.01.T01 MTR_7g077910 47.148 263 105 6 2 255 77 314 1.17e-68 219
MsG0880043593.01.T01 MTR_7g077910 47.253 91 36 3 273 351 89 179 1.00e-16 80.9
MsG0880043593.01.T01 MTR_7g078960 46.124 258 104 6 7 260 40 266 9.77e-65 207
MsG0880043593.01.T01 MTR_7g078960 55.556 90 30 4 273 352 54 143 2.88e-19 87.4
MsG0880043593.01.T01 MTR_4g008790 43.798 258 110 5 29 280 215 443 7.38e-62 205
MsG0880043593.01.T01 MTR_4g128320 42.471 259 102 7 1 257 53 266 1.27e-58 191
MsG0880043593.01.T01 MTR_4g128320 40.860 93 44 4 273 355 73 164 9.15e-12 65.5
MsG0880043593.01.T01 MTR_7g056503 45.259 232 109 3 24 254 168 382 2.66e-58 194
MsG0880043593.01.T01 MTR_7g078880 48.214 224 85 5 40 259 93 289 8.34e-58 193
MsG0880043593.01.T01 MTR_1g029650 41.762 261 116 7 5 260 154 383 2.93e-55 186
MsG0880043593.01.T01 MTR_2g043400 42.510 247 113 6 24 258 175 404 8.44e-55 186
MsG0880043593.01.T01 MTR_1g442850 45.259 232 102 7 19 248 149 357 4.41e-54 182
MsG0880043593.01.T01 MTR_2g043410 44.635 233 103 5 27 248 178 395 5.34e-54 184
MsG0880043593.01.T01 MTR_2g043410 37.805 82 48 2 273 351 180 261 2.45e-11 65.1
MsG0880043593.01.T01 MTR_1g015730 44.118 238 107 6 25 259 159 373 1.43e-53 182
MsG0880043593.01.T01 MTR_7g062060 42.248 258 124 8 2 259 160 392 1.60e-53 182
MsG0880043593.01.T01 MTR_7g056173 44.828 232 109 5 29 252 29 249 2.94e-53 179
MsG0880043593.01.T01 MTR_7g057270 41.631 233 122 3 24 252 174 396 3.00e-53 182
MsG0880043593.01.T01 MTR_7g057270 40.789 76 39 1 273 342 179 254 3.95e-11 64.3
MsG0880043593.01.T01 MTR_0649s0020 43.777 233 103 7 28 252 158 370 5.18e-52 177
MsG0880043593.01.T01 MTR_0649s0020 42.667 75 39 2 273 343 159 233 1.01e-11 66.2
MsG0880043593.01.T01 MTR_3g080370 40.891 247 125 4 20 252 161 400 3.53e-51 177
MsG0880043593.01.T01 MTR_6g016285 39.474 266 133 6 1 252 149 400 4.64e-51 176
MsG0880043593.01.T01 MTR_7g056710 45.536 224 98 6 26 248 163 363 6.08e-51 174
MsG0880043593.01.T01 MTR_7g056737 44.978 229 98 6 24 249 166 369 6.62e-51 175
MsG0880043593.01.T01 MTR_7g056290 43.038 237 100 6 27 248 182 398 1.23e-50 175
MsG0880043593.01.T01 MTR_7g056290 40.964 83 45 2 273 351 184 266 8.43e-13 69.7
MsG0880043593.01.T01 MTR_7g055953 44.595 222 102 7 28 247 91 293 1.45e-50 172
MsG0880043593.01.T01 MTR_7g055953 43.820 89 40 4 268 351 87 170 1.32e-12 68.2
MsG0880043593.01.T01 MTR_7g056003 43.697 238 102 7 27 249 166 386 2.10e-50 174
MsG0880043593.01.T01 MTR_7g056003 38.889 90 40 3 273 351 168 253 5.68e-12 67.0
MsG0880043593.01.T01 MTR_7g061090 43.265 245 111 7 19 259 178 398 3.47e-50 173
MsG0880043593.01.T01 MTR_7g061090 43.529 85 40 3 273 351 184 266 5.89e-13 70.1
MsG0880043593.01.T01 MTR_6g065510 44.298 228 100 8 28 249 105 311 4.31e-50 171
MsG0880043593.01.T01 MTR_6g065510 44.828 87 35 5 273 351 106 187 1.07e-11 65.9
MsG0880043593.01.T01 MTR_3g072470 43.404 235 107 5 25 248 176 395 5.52e-50 173
MsG0880043593.01.T01 MTR_3g072470 40.964 83 45 2 273 351 180 262 1.33e-11 65.9
MsG0880043593.01.T01 MTR_1g015740 39.394 264 105 6 4 260 91 306 6.21e-50 171
MsG0880043593.01.T01 MTR_7g056390 41.423 239 105 6 25 248 176 394 1.19e-49 172
MsG0880043593.01.T01 MTR_7g056390 38.554 83 47 2 273 351 180 262 5.14e-12 67.0
MsG0880043593.01.T01 MTR_7g062100 43.277 238 103 7 17 251 171 379 2.30e-49 171
MsG0880043593.01.T01 MTR_7g113500 39.655 232 125 4 24 251 143 363 4.89e-49 169
MsG0880043593.01.T01 MTR_7g056717 44.828 232 100 7 24 252 166 372 1.33e-48 169
MsG0880043593.01.T01 MTR_7g009265 42.373 236 132 2 17 252 75 306 1.38e-48 167
MsG0880043593.01.T01 MTR_7g055930 43.162 234 108 7 29 251 187 406 1.49e-48 169
MsG0880043593.01.T01 MTR_7g055930 47.191 89 37 3 273 351 187 275 4.65e-14 73.6
MsG0880043593.01.T01 MTR_2g010950 42.735 234 115 6 24 251 166 386 1.59e-48 169
MsG0880043593.01.T01 MTR_4g034860 40.945 254 121 7 1 248 161 391 1.93e-48 169
MsG0880043593.01.T01 MTR_7g055830 42.735 234 109 7 29 251 119 338 2.16e-48 167
MsG0880043593.01.T01 MTR_7g055830 47.191 89 37 3 273 351 119 207 5.11e-14 72.8
MsG0880043593.01.T01 MTR_7g055870 42.735 234 109 7 29 251 187 406 7.15e-48 167
MsG0880043593.01.T01 MTR_7g055870 47.191 89 37 3 273 351 187 275 6.64e-14 72.8
MsG0880043593.01.T01 MTR_6g055210 40.672 268 130 9 1 253 150 403 9.16e-48 168
MsG0880043593.01.T01 MTR_7g066850 40.161 249 135 5 10 253 148 387 1.16e-47 168
MsG0880043593.01.T01 MTR_7g066850 44.304 79 37 2 273 349 167 240 1.74e-11 65.9
MsG0880043593.01.T01 MTR_7g055977 42.292 253 119 6 1 251 136 363 3.21e-47 165
MsG0880043593.01.T01 MTR_0464s0020 41.423 239 114 7 25 250 183 408 3.32e-47 166
MsG0880043593.01.T01 MTR_8g066440 38.976 254 126 6 1 249 154 383 9.85e-47 164
MsG0880043593.01.T01 MTR_7g028660 39.130 253 117 6 28 272 157 380 1.36e-46 163
MsG0880043593.01.T01 MTR_6g017305 40.889 225 128 3 28 252 45 264 1.44e-46 160
MsG0880043593.01.T01 MTR_2g010920 39.773 264 131 9 1 251 158 406 2.24e-46 164
MsG0880043593.01.T01 MTR_5g056020 37.828 267 137 7 2 252 150 403 2.37e-46 165
MsG0880043593.01.T01 MTR_3g437520 40.079 252 125 6 25 267 183 417 4.06e-46 164
MsG0880043593.01.T01 MTR_7g056570 42.570 249 112 8 1 248 147 365 4.19e-46 163
MsG0880043593.01.T01 MTR_7g061050 40.486 247 117 9 9 251 148 368 8.77e-46 161
MsG0880043593.01.T01 MTR_7g061060 39.921 253 120 8 10 258 152 376 1.40e-45 161
MsG0880043593.01.T01 MTR_5g043160 42.259 239 118 6 24 253 214 441 1.86e-45 162
MsG0880043593.01.T01 MTR_6g017295 40.400 250 128 4 17 250 85 329 4.28e-45 162
MsG0880043593.01.T01 MTR_4g129190 38.550 262 126 8 1 250 133 371 4.85e-45 159
MsG0880043593.01.T01 MTR_7g445890 40.336 238 121 7 25 250 135 363 5.08e-45 159
MsG0880043593.01.T01 MTR_7g055987 43.500 200 86 4 25 224 163 335 8.54e-45 158
MsG0880043593.01.T01 MTR_7g055987 43.210 81 38 2 273 351 167 241 4.42e-12 67.0
MsG0880043593.01.T01 MTR_7g091640 45.128 195 96 3 1 192 162 348 2.22e-44 157
MsG0880043593.01.T01 MTR_4g030830 39.149 235 128 5 28 257 156 380 3.08e-44 157
MsG0880043593.01.T01 MTR_6g017280 40.444 225 120 4 26 250 158 368 6.13e-44 156
MsG0880043593.01.T01 MTR_3g464500 39.662 237 117 6 25 252 166 385 7.15e-44 156
MsG0880043593.01.T01 MTR_3g464500 44.737 76 34 2 273 342 170 243 1.05e-12 69.3
MsG0880043593.01.T01 MTR_3g464470 39.914 233 122 5 25 252 143 362 7.22e-44 156
MsG0880043593.01.T01 MTR_3g464470 44.737 76 34 2 273 342 147 220 9.03e-12 66.2
MsG0880043593.01.T01 MTR_7g091630 40.486 247 116 6 25 252 179 413 8.88e-44 157
MsG0880043593.01.T01 MTR_4g011660 37.247 247 116 4 25 251 172 399 1.51e-43 156
MsG0880043593.01.T01 MTR_7g060940 37.354 257 117 5 9 252 150 375 2.72e-43 155
MsG0880043593.01.T01 MTR_7g061940 43.721 215 93 7 28 240 78 266 3.88e-43 151
MsG0880043593.01.T01 MTR_4g033495 41.256 223 108 4 28 248 185 386 4.61e-43 155
MsG0880043593.01.T01 MTR_7g052670 37.546 269 125 7 6 256 168 411 5.05e-43 155
MsG0880043593.01.T01 MTR_8g030630 36.630 273 145 8 71 337 72 322 1.83e-42 154
MsG0880043593.01.T01 MTR_8g030630 32.645 242 127 4 9 247 232 440 4.34e-29 117
MsG0880043593.01.T01 MTR_7g078940 38.403 263 88 8 2 261 190 381 9.27e-42 151
MsG0880043593.01.T01 MTR_7g078940 50.000 90 33 5 273 351 211 299 3.97e-14 73.6
MsG0880043593.01.T01 MTR_7g056200 40.465 215 105 6 48 252 163 364 5.01e-41 148
MsG0880043593.01.T01 MTR_7g034310 42.152 223 98 5 28 249 18 210 6.26e-41 144
MsG0880043593.01.T01 MTR_4g024890 39.732 224 125 4 29 252 154 367 1.09e-40 147
MsG0880043593.01.T01 MTR_6g086920 33.704 270 154 6 1 257 200 457 2.27e-40 149
MsG0880043593.01.T01 MTR_7g066840 38.889 234 118 5 26 253 166 380 2.87e-40 147
MsG0880043593.01.T01 MTR_7g050480 38.750 240 111 5 22 251 157 370 6.52e-40 145
MsG0880043593.01.T01 MTR_4g019990 39.076 238 110 8 28 252 156 371 1.13e-39 145
MsG0880043593.01.T01 MTR_4g031020 35.833 240 134 7 21 252 183 410 1.40e-39 145
MsG0880043593.01.T01 MTR_2g047895 33.582 268 130 7 24 284 90 316 1.46e-39 144
MsG0880043593.01.T01 MTR_2g010900 37.447 235 128 5 1 232 114 332 1.55e-39 144
MsG0880043593.01.T01 MTR_4g129160 41.121 214 103 6 21 227 163 360 1.95e-39 144
MsG0880043593.01.T01 MTR_7g050520 37.917 240 113 5 22 251 157 370 2.03e-39 144
MsG0880043593.01.T01 MTR_2g047892 37.768 233 111 8 24 248 168 374 4.32e-39 144
MsG0880043593.01.T01 MTR_5g068040 39.485 233 116 9 28 254 152 365 8.14e-39 142
MsG0880043593.01.T01 MTR_6g088385 36.882 263 123 7 1 249 65 298 8.44e-39 141
MsG0880043593.01.T01 MTR_0128s0020 40.090 222 109 5 28 249 176 373 1.12e-38 142
MsG0880043593.01.T01 MTR_6g081280 38.696 230 117 4 24 251 15 222 1.44e-38 138
MsG0880043593.01.T01 MTR_7g061010 36.327 245 121 5 17 256 159 373 1.71e-38 142
MsG0880043593.01.T01 MTR_7g070880 36.396 283 131 11 18 287 175 421 2.15e-38 142
MsG0880043593.01.T01 MTR_2g017720 36.154 260 129 10 2 257 61 287 2.28e-38 142
MsG0880043593.01.T01 MTR_7g060960 42.105 228 96 8 28 252 155 349 2.34e-38 141
MsG0880043593.01.T01 MTR_0128s0070 39.648 227 113 6 25 251 176 378 2.44e-38 142
MsG0880043593.01.T01 MTR_7g070830 38.866 247 118 10 18 251 175 401 4.32e-38 141
MsG0880043593.01.T01 MTR_4g030980 35.000 240 136 7 21 252 183 410 5.01e-38 141
MsG0880043593.01.T01 MTR_2g006360 39.149 235 102 8 25 257 154 349 5.32e-38 140
MsG0880043593.01.T01 MTR_7g056760 39.655 232 111 7 28 251 176 386 1.00e-37 140
MsG0880043593.01.T01 MTR_0707s0020 35.249 261 132 7 1 249 188 423 1.02e-37 141
MsG0880043593.01.T01 MTR_7g066100 35.547 256 137 4 2 251 141 374 2.03e-37 139
MsG0880043593.01.T01 MTR_7g052150 38.696 230 117 6 26 251 170 379 5.40e-37 138
MsG0880043593.01.T01 MTR_5g069760 37.991 229 113 5 23 249 149 350 6.37e-37 137
MsG0880043593.01.T01 MTR_7g022600 37.500 232 126 5 29 251 182 403 8.03e-37 138
MsG0880043593.01.T01 MTR_2g461450 37.288 236 126 7 20 252 140 356 8.81e-37 136
MsG0880043593.01.T01 MTR_2g047200 39.738 229 106 11 25 247 170 372 1.33e-36 137
MsG0880043593.01.T01 MTR_0097s0030 36.364 231 118 5 23 252 158 360 3.61e-36 135
MsG0880043593.01.T01 MTR_0097s0030 43.284 67 36 1 273 339 164 228 8.02e-11 63.5
MsG0880043593.01.T01 MTR_2g047240 36.364 231 118 5 23 252 158 360 3.61e-36 135
MsG0880043593.01.T01 MTR_2g047240 43.284 67 36 1 273 339 164 228 8.02e-11 63.5
MsG0880043593.01.T01 MTR_4g030090 38.034 234 128 9 28 254 161 384 1.12e-35 134
MsG0880043593.01.T01 MTR_5g069930 37.333 225 113 7 28 249 158 357 1.48e-35 134
MsG0880043593.01.T01 MTR_7g091610 42.683 164 83 2 86 246 68 223 2.18e-35 130
MsG0880043593.01.T01 MTR_6g092560 32.950 261 143 7 1 252 141 378 2.22e-35 134
MsG0880043593.01.T01 MTR_2g010935 37.104 221 106 4 32 251 43 231 4.43e-35 129
MsG0880043593.01.T01 MTR_4g030110 38.075 239 112 6 23 254 172 381 6.69e-35 132
MsG0880043593.01.T01 MTR_0128s0010 35.556 225 122 6 29 249 172 377 7.85e-35 132
MsG0880043593.01.T01 MTR_7g056820 33.333 255 142 7 20 272 150 378 1.43e-34 131
MsG0880043593.01.T01 MTR_2g047878 35.217 230 102 8 24 252 163 346 1.77e-34 130
MsG0880043593.01.T01 MTR_7g022670 38.208 212 120 5 40 251 132 332 3.11e-34 129
MsG0880043593.01.T01 MTR_5g096710 36.123 227 121 6 29 251 174 380 6.44e-34 130
MsG0880043593.01.T01 MTR_7g056260 48.235 170 73 4 24 188 158 317 6.63e-33 125
MsG0880043593.01.T01 MTR_1g071010 35.714 238 121 6 22 251 155 368 6.65e-33 127
MsG0880043593.01.T01 MTR_7g066030 36.017 236 123 6 21 251 173 385 1.20e-32 126
MsG0880043593.01.T01 MTR_2g027820 39.474 190 96 5 67 252 106 280 3.69e-32 123
MsG0880043593.01.T01 MTR_7g066060 35.622 233 127 7 26 252 177 392 4.40e-32 126
MsG0880043593.01.T01 MTR_7g056797 37.719 228 117 7 29 251 177 384 5.87e-32 124
MsG0880043593.01.T01 MTR_4g020000 36.364 253 138 8 24 270 110 345 8.02e-32 123
MsG0880043593.01.T01 MTR_2g437110 35.270 241 103 8 28 256 180 379 1.27e-31 125
MsG0880043593.01.T01 MTR_7g035295 35.398 226 103 6 29 250 174 360 4.88e-31 122
MsG0880043593.01.T01 MTR_7g066000 36.723 177 99 3 24 194 171 340 7.03e-30 119
MsG0880043593.01.T01 MTR_7g066080 34.182 275 127 13 2 248 148 396 8.08e-30 119
MsG0880043593.01.T01 MTR_6g042600 42.208 154 70 2 101 248 162 302 3.07e-29 117
MsG0880043593.01.T01 MTR_4g037465 33.624 229 129 6 23 247 163 372 5.75e-29 116
MsG0880043593.01.T01 MTR_0267s0050 30.830 253 148 6 21 268 153 383 6.36e-29 115
MsG0880043593.01.T01 MTR_0128s0110 30.876 217 128 5 57 268 4 203 3.06e-28 110
MsG0880043593.01.T01 MTR_7g058630 38.994 159 85 2 93 251 15 161 1.77e-27 107
MsG0880043593.01.T01 MTR_7g056170 34.298 242 104 6 22 252 245 442 2.13e-27 112
MsG0880043593.01.T01 MTR_4g006350 30.544 239 146 5 28 259 639 864 2.40e-27 114
MsG0880043593.01.T01 MTR_3g013950 29.249 253 152 6 21 268 155 385 1.11e-26 109
MsG0880043593.01.T01 MTR_1g112010 31.111 225 117 3 28 252 121 307 1.95e-26 108
MsG0880043593.01.T01 MTR_2g060555 30.916 262 131 10 1 256 57 274 8.48e-26 105
MsG0880043593.01.T01 MTR_7g056023 40.805 174 81 5 1 170 123 278 1.95e-25 104
MsG0880043593.01.T01 MTR_7g006360 46.957 115 51 2 136 250 155 259 9.34e-25 102
MsG0880043593.01.T01 MTR_4g030760 32.468 231 128 5 28 257 214 417 1.06e-24 104
MsG0880043593.01.T01 MTR_7g062070 46.457 127 55 3 125 248 75 191 2.86e-24 99.0
MsG0880043593.01.T01 MTR_7g070900 39.106 179 70 6 21 192 231 377 6.27e-24 102
MsG0880043593.01.T01 MTR_7g070440 38.202 178 87 7 29 196 151 315 7.27e-24 101
MsG0880043593.01.T01 MTR_4g030790 40.719 167 89 7 28 191 128 287 1.32e-23 100
MsG0880043593.01.T01 MTR_5g011350 39.610 154 68 4 22 167 110 246 1.49e-23 98.6
MsG0880043593.01.T01 MTR_7g070937 40.458 131 73 4 25 150 10 140 2.97e-23 95.5
MsG0880043593.01.T01 MTR_7g070937 33.333 102 51 3 270 361 11 105 1.55e-11 62.8
MsG0880043593.01.T01 MTR_7g445750 36.250 160 91 2 21 175 176 329 4.49e-23 99.0
MsG0880043593.01.T01 MTR_7g066010 31.624 234 100 7 21 249 173 351 2.91e-22 97.1
MsG0880043593.01.T01 MTR_5g069950 34.463 177 79 6 23 194 59 203 3.44e-22 94.0
MsG0880043593.01.T01 MTR_7g089830 37.736 159 66 5 87 238 6 138 2.09e-21 89.7
MsG0880043593.01.T01 MTR_1g047490 33.862 189 88 5 5 189 152 307 7.38e-21 92.4
MsG0880043593.01.T01 MTR_2g021150 35.802 162 87 5 29 188 160 306 5.72e-20 90.5
MsG0880043593.01.T01 MTR_6g017270 40.945 127 62 2 136 252 200 323 9.80e-20 89.4
MsG0880043593.01.T01 MTR_3g055000 38.931 131 56 4 122 251 1 108 2.79e-19 83.2
MsG0880043593.01.T01 MTR_7g066040 38.849 139 77 5 8 138 63 201 4.56e-19 85.9
MsG0880043593.01.T01 MTR_1g016960 48.387 93 42 2 163 255 152 238 6.26e-19 85.9
MsG0880043593.01.T01 MTR_7g056793 28.112 249 118 7 3 251 26 213 7.41e-19 85.1
MsG0880043593.01.T01 MTR_8g101940 29.741 232 129 6 28 252 146 350 9.88e-18 84.0
MsG0880043593.01.T01 MTR_7g061100 41.228 114 53 4 29 140 128 229 2.03e-16 79.7
MsG0880043593.01.T01 MTR_7g058660 38.776 98 57 2 154 251 102 196 4.18e-16 77.0
MsG0880043593.01.T01 MTR_7g013590 28.750 240 133 9 28 261 175 382 6.76e-16 79.0
MsG0880043593.01.T01 MTR_1g097330 27.679 224 131 6 29 251 154 347 1.77e-15 77.8
MsG0880043593.01.T01 MTR_4g031770 30.698 215 112 10 26 228 136 325 2.27e-15 77.0
MsG0880043593.01.T01 MTR_1g050542 34.146 164 90 5 29 191 194 340 2.96e-15 77.0
MsG0880043593.01.T01 MTR_2g021190 32.386 176 92 7 23 190 156 312 8.08e-15 75.5
MsG0880043593.01.T01 MTR_7g021580 43.000 100 42 2 173 272 218 302 9.37e-15 74.3
MsG0880043593.01.T01 MTR_1g097560 30.909 165 90 5 29 193 177 317 1.08e-14 75.1
MsG0880043593.01.T01 MTR_7g037670 37.719 114 61 3 22 135 148 251 1.12e-14 74.7
MsG0880043593.01.T01 MTR_3g055070 36.923 130 57 4 122 250 1 106 1.13e-14 71.6
MsG0880043593.01.T01 MTR_3g030320 31.795 195 103 10 9 197 68 238 1.92e-14 73.6
MsG0880043593.01.T01 MTR_6g048150 44.444 90 34 2 168 252 13 91 2.17e-14 69.7
MsG0880043593.01.T01 MTR_1g097370 27.815 302 171 14 29 312 136 408 3.14e-14 74.3
MsG0880043593.01.T01 MTR_4g030880 33.166 199 83 8 56 253 50 199 4.67e-14 73.6
MsG0880043593.01.T01 MTR_4g024910 37.594 133 66 5 123 252 130 248 5.37e-14 72.4
MsG0880043593.01.T01 MTR_0354s0030 45.238 84 38 2 171 252 1 78 9.24e-14 67.0
MsG0880043593.01.T01 MTR_2g046920 29.680 219 120 8 29 247 169 353 9.83e-14 72.0
MsG0880043593.01.T01 MTR_1g097510 32.335 167 87 6 59 215 91 241 1.47e-13 70.9
MsG0880043593.01.T01 MTR_1g046600 44.048 84 41 1 157 240 229 306 2.68e-13 70.1
MsG0880043593.01.T01 MTR_6g007135 27.027 222 133 8 28 248 175 368 3.19e-13 70.9
MsG0880043593.01.T01 MTR_7g445580 32.192 146 80 4 105 248 17 145 3.46e-13 67.0
MsG0880043593.01.T01 MTR_8g467140 32.973 185 106 9 10 190 150 320 8.16e-13 68.9
MsG0880043593.01.T01 MTR_5g022420 29.302 215 113 8 29 240 163 341 8.99e-13 69.3
MsG0880043593.01.T01 MTR_2g078900 30.909 165 89 7 28 190 176 317 9.61e-13 68.9
MsG0880043593.01.T01 MTR_1g054575 31.288 163 95 5 29 191 191 336 1.24e-12 69.7
MsG0880043593.01.T01 MTR_7g407070 30.435 207 107 10 1 190 155 341 1.61e-12 68.6
MsG0880043593.01.T01 MTR_3g436150 33.333 180 88 10 23 190 176 335 2.33e-12 68.2
MsG0880043593.01.T01 MTR_2g078870 30.000 210 111 11 2 204 80 260 2.37e-12 67.4
MsG0880043593.01.T01 MTR_1g056280 28.780 205 109 9 36 228 2 181 3.33e-12 65.5
MsG0880043593.01.T01 MTR_3g007330 32.353 170 78 8 29 188 187 329 4.32e-12 67.4
MsG0880043593.01.T01 MTR_3g007410 32.530 166 85 7 29 188 196 340 9.65e-12 66.2
MsG0880043593.01.T01 MTR_1g097490 28.205 195 99 6 57 251 220 373 1.21e-11 65.9
MsG0880043593.01.T01 MTR_4g061340 29.319 191 99 8 28 205 169 336 1.27e-11 65.9
MsG0880043593.01.T01 MTR_3g024130 28.755 233 116 11 29 250 107 300 1.58e-11 65.1
MsG0880043593.01.T01 MTR_3g009240 31.325 166 79 8 25 188 186 318 1.81e-11 65.5
MsG0880043593.01.T01 MTR_4g053470 28.837 215 106 8 37 246 145 317 2.14e-11 64.7
MsG0880043593.01.T01 MTR_6g007150 28.402 169 104 6 17 183 109 262 2.31e-11 64.7
MsG0880043593.01.T01 MTR_1g058190 24.206 252 147 11 28 267 150 369 2.51e-11 64.7
MsG0880043593.01.T01 MTR_7g056560 50.000 62 30 1 81 141 120 181 2.62e-11 62.8
MsG0880043593.01.T01 MTR_7g060930 46.774 62 33 0 107 168 11 72 2.83e-11 59.3
MsG0880043593.01.T01 MTR_3g009260 31.288 163 86 8 29 188 181 320 3.53e-11 64.3
MsG0880043593.01.T01 MTR_3g007360 31.928 166 86 7 29 188 196 340 3.84e-11 64.3
MsG0880043593.01.T01 MTR_1g055375 28.947 190 113 8 3 188 127 298 5.06e-11 63.9
MsG0880043593.01.T01 MTR_3g010870 30.058 173 92 9 16 186 170 315 9.22e-11 63.2
MsG0880043593.01.T01 MTR_3g014540 29.474 190 106 8 9 189 148 318 9.55e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 70 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACGATGTCTCCAAATTT+TGG 0.107095 8:+27420146 None:intergenic
GCCCACCCTTTCCCGTTTCT+TGG 0.189014 8:+27420197 MsG0880043593.01.T01:CDS
GGACTCAATTTCTTAAAATA+AGG 0.214000 8:+27420690 MsG0880043593.01.T01:CDS
ATATGGCAGATGAAGGAATT+AGG 0.230362 8:+27420653 MsG0880043593.01.T01:CDS
CGGCGAAAATACCCAAAATT+TGG 0.241858 8:-27420158 None:intergenic
CTGCCAATTGTTGCTGTGTT+GGG 0.247941 8:+27420584 MsG0880043593.01.T01:CDS
TGTTATTGTTTCACTCGATT+TGG 0.262924 8:+27420502 MsG0880043593.01.T01:CDS
GTTCCTCTTCATTTCTCCTT+TGG 0.310757 8:+27423012 MsG0880043593.01.T01:CDS
TCTGCGAGAATTCTCAGTTT+TGG 0.318923 8:+27422952 MsG0880043593.01.T01:CDS
GTTATTGTTTCACTCGATTT+GGG 0.323637 8:+27420503 MsG0880043593.01.T01:CDS
CCTCTTCATTTCTCCTTTGG+AGG 0.335304 8:+27423015 MsG0880043593.01.T01:CDS
TCTCTCCAATTGTAGAGAAT+TGG 0.338819 8:-27420857 None:intergenic
ATTGAGTGAAACAATAAAAT+TGG 0.340562 8:-27423128 None:intergenic
GAGAAATGAAGAGGAACAAC+TGG 0.341519 8:-27423006 None:intergenic
AGAGAATTGGATGGGATTCT+TGG 0.343301 8:-27420844 None:intergenic
TTTATTGTTTCACTCAATTT+GGG 0.344513 8:+27423133 MsG0880043593.01.T01:CDS
ATTTGAGTAGCACTCTTAAT+TGG 0.357492 8:+27420423 MsG0880043593.01.T01:CDS
CCCATCCAATTCTCTACAAT+TGG 0.361446 8:+27420852 MsG0880043593.01.T01:CDS
TATAGAATTACTACTATTAT+CGG 0.376446 8:-27420924 None:intergenic
GGCCATTACAACGTCACCTT+TGG 0.377923 8:+27420218 MsG0880043593.01.T01:CDS
CATCTGCCATATAAGAAAAT+CGG 0.389639 8:-27420642 None:intergenic
TTGTCGACGTGGATTGTAAT+TGG 0.399566 8:-27420279 None:intergenic
TACGAATGGACAGGAACAAC+AGG 0.400553 8:-27420368 None:intergenic
TTTGGTTATGATAGTTCTAC+TGG 0.405402 8:+27422898 MsG0880043593.01.T01:CDS
TCTGCCAATTGTTGCTGTGT+TGG 0.407697 8:+27420583 MsG0880043593.01.T01:CDS
TGCCAATTGTTGCTGTGTTG+GGG 0.408692 8:+27420585 MsG0880043593.01.T01:CDS
AATCACGAGGAAGCCGGTAT+TGG 0.409961 8:-27423171 None:intergenic
CGTTGTAATGGCCAAGAAAC+GGG 0.425153 8:-27420208 None:intergenic
TATGGCAGATGAAGGAATTA+GGG 0.425842 8:+27420654 MsG0880043593.01.T01:CDS
ATATGAGTAGCACTCTTAAC+TGG 0.438429 8:+27423061 MsG0880043593.01.T01:CDS
AATTAGGGAATGATGAATCT+TGG 0.440871 8:+27420669 MsG0880043593.01.T01:CDS
GGGCTGCATGGCTGTGAAAA+CGG 0.443170 8:-27420178 None:intergenic
AATTGGATGGGATTCTTGGC+TGG 0.462290 8:-27420840 None:intergenic
GTTCCTGTCCATTCGTACTT+TGG 0.484056 8:+27420374 MsG0880043593.01.T01:CDS
TACCAGTGTATCAGTCTCTT+CGG 0.485294 8:-27420810 None:intergenic
ACGGGAAAGGGTGGGCTGCA+TGG 0.491581 8:-27420190 None:intergenic
TACTGACACTTATAAGATAG+TGG 0.495136 8:+27420253 MsG0880043593.01.T01:CDS
ATTATGGTACAAGATTGCTT+TGG 0.499853 8:+27422880 MsG0880043593.01.T01:CDS
GCCAATTGTTGCTGTGTTGG+GGG 0.505591 8:+27420586 MsG0880043593.01.T01:CDS
CCAATTGTTGCTGTGTTGGG+GGG 0.505876 8:+27420587 MsG0880043593.01.T01:CDS
GACCAAAGGTGACGTTGTAA+TGG 0.506287 8:-27420220 None:intergenic
GAGTAGCACTCTTAATTGGT+TGG 0.510493 8:+27420427 MsG0880043593.01.T01:CDS
AATGATACTTTATCTTGTCA+TGG 0.517983 8:-27420763 None:intergenic
CCGAGACATACGACCAATAC+CGG 0.524573 8:+27423158 MsG0880043593.01.T01:CDS
ACAGCAACAATTGGCAGAGC+AGG 0.524771 8:-27420578 None:intergenic
ACGTTGTAATGGCCAAGAAA+CGG 0.527047 8:-27420209 None:intergenic
GGCCAAGAAACGGGAAAGGG+TGG 0.527431 8:-27420199 None:intergenic
TTCCGAAGAGACTGATACAC+TGG 0.536276 8:+27420808 MsG0880043593.01.T01:CDS
CCGGTATTGGTCGTATGTCT+CGG 0.539285 8:-27423158 None:intergenic
TCACCAAAGTACGAATGGAC+AGG 0.541390 8:-27420377 None:intergenic
TACTGGCACTAATAAGATAG+TGG 0.550727 8:+27422915 MsG0880043593.01.T01:CDS
CTCCTTTGGAGGAAAACATG+AGG 0.558562 8:+27423026 MsG0880043593.01.T01:CDS
CCTCCAAAGGAGAAATGAAG+AGG 0.565296 8:-27423015 None:intergenic
TCCTTTGGAGGAAAACATGA+GGG 0.579867 8:+27423027 MsG0880043593.01.T01:CDS
TCCAATTGTAGAGAATTGGA+TGG 0.587228 8:-27420853 None:intergenic
CCAATTGTAGAGAATTGGAT+GGG 0.594079 8:-27420852 None:intergenic
AAATAGAGTGGAGCGAACAA+AGG 0.595295 8:+27420880 MsG0880043593.01.T01:CDS
GCAACAATTGGCAGAGCAGG+TGG 0.598422 8:-27420575 None:intergenic
GAGTAGCACTCTTAACTGGT+TGG 0.608024 8:+27423065 MsG0880043593.01.T01:CDS
GTCTCTTCGGAAAGAAGAAG+CGG 0.608506 8:-27420797 None:intergenic
TAATGGCCAAGAAACGGGAA+AGG 0.616731 8:-27420203 None:intergenic
AGTAGAATTATCAAGACCAA+AGG 0.617857 8:-27420234 None:intergenic
GCCAAGAAACGGGAAAGGGT+GGG 0.621968 8:-27420198 None:intergenic
AATGGCCAAGAAACGGGAAA+GGG 0.629392 8:-27420202 None:intergenic
ATATTCAGTTGTTGTCGACG+TGG 0.638759 8:-27420290 None:intergenic
AGAAATGAAGAGGAACAACT+GGG 0.648442 8:-27423005 None:intergenic
CATCAAAATCACGAGGCAGA+CGG 0.649710 8:-27420547 None:intergenic
ACGAATGGACAGGAACAACA+GGG 0.689251 8:-27420367 None:intergenic
GGCATTTCATCAAAATCACG+AGG 0.693788 8:-27420554 None:intergenic
CAATTGGAGAGAAAATAGAG+TGG 0.704129 8:+27420868 MsG0880043593.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAATTACTACTATTAT+CGG - Chr8:27420927-27420946 None:intergenic 15.0%
!! TGAATATCAATGTAAAAATT+TGG + Chr8:27420306-27420325 MsG0880043593.01.T01:CDS 15.0%
!!! ATTAATTTTGCTTTTTGTTA+TGG - Chr8:27421443-27421462 None:intergenic 15.0%
!!! CTATTTCTATTTGATTTTAT+TGG + Chr8:27421553-27421572 MsG0880043593.01.T01:intron 15.0%
!!! TATACAATTAGCTTAATTAA+TGG + Chr8:27422045-27422064 MsG0880043593.01.T01:intron 15.0%
!!! TCACAATATTTTTTATTTGA+AGG + Chr8:27423092-27423111 MsG0880043593.01.T01:CDS 15.0%
!!! TTAATTTTGCTTTTTGTTAT+GGG - Chr8:27421442-27421461 None:intergenic 15.0%
!!! TTATTTTGAAGTTAATTTAC+TGG + Chr8:27421902-27421921 MsG0880043593.01.T01:intron 15.0%
!! AAACATATTATTTGTTCTCA+GGG - Chr8:27422488-27422507 None:intergenic 20.0%
!! ACTAAATAAAATGTATTGAG+AGG - Chr8:27422817-27422836 None:intergenic 20.0%
!! AGAAAAAGGCTATAAAAAAT+GGG + Chr8:27422232-27422251 MsG0880043593.01.T01:intron 20.0%
!! ATTAACTTCAAAATAACTTC+AGG - Chr8:27421898-27421917 None:intergenic 20.0%
!! ATTGAGTGAAACAATAAAAT+TGG - Chr8:27423131-27423150 None:intergenic 20.0%
!! TAAACATATTATTTGTTCTC+AGG - Chr8:27422489-27422508 None:intergenic 20.0%
!! TAATACTTAATGAGTAAAGT+GGG - Chr8:27421325-27421344 None:intergenic 20.0%
!! TGCAAAACAAAGATATATAA+GGG - Chr8:27422276-27422295 None:intergenic 20.0%
!! TTAATACTTAATGAGTAAAG+TGG - Chr8:27421326-27421345 None:intergenic 20.0%
!! TTATAATATAGATAGAAGTG+TGG + Chr8:27422560-27422579 MsG0880043593.01.T01:intron 20.0%
!! TTGATTATGAAATCATGTAT+TGG - Chr8:27422089-27422108 None:intergenic 20.0%
!! TTGTTTAAACTTAGTTATTC+CGG + Chr8:27421376-27421395 MsG0880043593.01.T01:intron 20.0%
!! TTTATTGTTTCACTCAATTT+GGG + Chr8:27423133-27423152 MsG0880043593.01.T01:CDS 20.0%
!!! AATGTAAAAATTTGGAGTTT+TGG + Chr8:27420314-27420333 MsG0880043593.01.T01:CDS 20.0%
!!! ATATGTTTATTTTATCCTTG+TGG + Chr8:27422500-27422519 MsG0880043593.01.T01:intron 20.0%
!!! GATAAAGTATCATTTTCAAT+TGG + Chr8:27420772-27420791 MsG0880043593.01.T01:CDS 20.0%
!!! TGATTCTTTGAAATATATGA+TGG + Chr8:27422354-27422373 MsG0880043593.01.T01:intron 20.0%
!!! TTCTAAATTTCAGTTTTTGT+TGG + Chr8:27421706-27421725 MsG0880043593.01.T01:intron 20.0%
!!! TTTTATTGTTTCACTCAATT+TGG + Chr8:27423132-27423151 MsG0880043593.01.T01:CDS 20.0%
! AAACAAACCAACTAAGATAT+TGG - Chr8:27421869-27421888 None:intergenic 25.0%
! AAACAAGTAAACCATAAAAG+AGG - Chr8:27421010-27421029 None:intergenic 25.0%
! AAGTTATGATGAATCATGAA+TGG + Chr8:27422640-27422659 MsG0880043593.01.T01:intron 25.0%
! AATGATACTTTATCTTGTCA+TGG - Chr8:27420766-27420785 None:intergenic 25.0%
! AGATGAACTTTATTCATCAA+TGG + Chr8:27422204-27422223 MsG0880043593.01.T01:intron 25.0%
! AGTTATGATGAATCATGAAT+GGG + Chr8:27422641-27422660 MsG0880043593.01.T01:intron 25.0%
! ATAGTAGTAATTCTATACTG+TGG + Chr8:27420930-27420949 MsG0880043593.01.T01:intron 25.0%
! ATGTACTAGTAAAAACCAAT+AGG - Chr8:27422305-27422324 None:intergenic 25.0%
! CAGAAAAAGGCTATAAAAAA+TGG + Chr8:27422231-27422250 MsG0880043593.01.T01:intron 25.0%
! CTGCAAAACAAAGATATATA+AGG - Chr8:27422277-27422296 None:intergenic 25.0%
! GGACTCAATTTCTTAAAATA+AGG + Chr8:27420690-27420709 MsG0880043593.01.T01:CDS 25.0%
! TATGGGTAACAAATTTGATT+TGG - Chr8:27421425-27421444 None:intergenic 25.0%
! TGTAAAAATAGGAACAACAA+AGG - Chr8:27420616-27420635 None:intergenic 25.0%
! TTGAGAAAATAGGAAAGAAT+AGG - Chr8:27421189-27421208 None:intergenic 25.0%
!! AACACTTTTGTTGAGAAAAT+AGG - Chr8:27421199-27421218 None:intergenic 25.0%
!! ACTTTTACCAAATAAGAGAA+TGG + Chr8:27422459-27422478 MsG0880043593.01.T01:intron 25.0%
!! ATTTTCAACTCATTATCACT+AGG + Chr8:27421254-27421273 MsG0880043593.01.T01:intron 25.0%
!! TCTTTTTCCTAAACATCAAA+TGG - Chr8:27422685-27422704 None:intergenic 25.0%
!!! CATTTTATTTAGTCTCTGAA+TGG + Chr8:27422824-27422843 MsG0880043593.01.T01:intron 25.0%
!!! CTTTTTTTCTTTCTTTGTTG+TGG + Chr8:27422788-27422807 MsG0880043593.01.T01:intron 25.0%
!!! TATTTCTTTTTTCGCTTAAG+AGG + Chr8:27421934-27421953 MsG0880043593.01.T01:intron 25.0%
!!! TTGTTGTTCCTATTTTTACA+AGG + Chr8:27420616-27420635 MsG0880043593.01.T01:CDS 25.0%
AAACCAACTAAGATATTGGA+CGG - Chr8:27421865-27421884 None:intergenic 30.0%
AACTATGTTAACCATGCATA+TGG + Chr8:27421985-27422004 MsG0880043593.01.T01:intron 30.0%
AAGATATATAAGGGTTAAGC+AGG - Chr8:27422267-27422286 None:intergenic 30.0%
AATTAGGGAATGATGAATCT+TGG + Chr8:27420669-27420688 MsG0880043593.01.T01:CDS 30.0%
AATTGGATGAAATTGAAGTG+TGG - Chr8:27421592-27421611 None:intergenic 30.0%
ACACTGAAATCTAAATGAAG+AGG - Chr8:27421645-27421664 None:intergenic 30.0%
AGGAATGCAAAAACGTATTA+TGG + Chr8:27422864-27422883 MsG0880043593.01.T01:intron 30.0%
AGTAGAATTATCAAGACCAA+AGG - Chr8:27420237-27420256 None:intergenic 30.0%
ATGAATGGGAGAAAACAAAA+GGG + Chr8:27422655-27422674 MsG0880043593.01.T01:intron 30.0%
ATTATGGTACAAGATTGCTT+TGG + Chr8:27422880-27422899 MsG0880043593.01.T01:CDS 30.0%
ATTTGAGTAGCACTCTTAAT+TGG + Chr8:27420423-27420442 MsG0880043593.01.T01:CDS 30.0%
CAGAATCATATAATACCACA+AGG - Chr8:27422518-27422537 None:intergenic 30.0%
CATCTGCCATATAAGAAAAT+CGG - Chr8:27420645-27420664 None:intergenic 30.0%
GACCAAAAAAATGGTAGTAT+TGG - Chr8:27421837-27421856 None:intergenic 30.0%
GATACATTATAGAACACTTC+CGG - Chr8:27421398-27421417 None:intergenic 30.0%
GCTTAATTAATGGCTGAATT+TGG + Chr8:27422055-27422074 MsG0880043593.01.T01:intron 30.0%
GTAGAAACTTAGAAACATGT+CGG + Chr8:27422386-27422405 MsG0880043593.01.T01:intron 30.0%
GTTATTGTTTCACTCGATTT+GGG + Chr8:27420503-27420522 MsG0880043593.01.T01:CDS 30.0%
TACTGACACTTATAAGATAG+TGG + Chr8:27420253-27420272 MsG0880043593.01.T01:CDS 30.0%
TGTTATTGTTTCACTCGATT+TGG + Chr8:27420502-27420521 MsG0880043593.01.T01:CDS 30.0%
TTATCACTAGGTACTTCTTT+AGG + Chr8:27421266-27421285 MsG0880043593.01.T01:intron 30.0%
TTCAAACAGCAAAGTTAGAA+GGG + Chr8:27422159-27422178 MsG0880043593.01.T01:intron 30.0%
TTGAAAAATGTGAAACCCTT+TGG + Chr8:27421148-27421167 MsG0880043593.01.T01:intron 30.0%
TTTGGTAAAAGTTGTCATTC+AGG - Chr8:27422451-27422470 None:intergenic 30.0%
! ATCGGTTTCCTTGTAAAAAT+AGG - Chr8:27420627-27420646 None:intergenic 30.0%
! TCAGTTTTTGTTGGATTTTG+TGG + Chr8:27421715-27421734 MsG0880043593.01.T01:intron 30.0%
! TTGGATTTTGCAACTTTGAA+AGG + Chr8:27421783-27421802 MsG0880043593.01.T01:intron 30.0%
! TTTGGTTATGATAGTTCTAC+TGG + Chr8:27422898-27422917 MsG0880043593.01.T01:CDS 30.0%
! TTTTCTTATATGGCAGATGA+AGG + Chr8:27420646-27420665 MsG0880043593.01.T01:CDS 30.0%
!! AATTTAGGGTTCATCGATTT+GGG - Chr8:27421512-27421531 None:intergenic 30.0%
!! AGGAAACCGATTTTCTTATA+TGG + Chr8:27420636-27420655 MsG0880043593.01.T01:CDS 30.0%
!! TATACCATTTTTCGACTTTG+TGG - Chr8:27422129-27422148 None:intergenic 30.0%
!! TCAGTTTTGGTGATAATGTT+TGG + Chr8:27422965-27422984 MsG0880043593.01.T01:CDS 30.0%
!! TGGATTTTGCAACTTTGAAA+GGG + Chr8:27421784-27421803 MsG0880043593.01.T01:intron 30.0%
!!! GTCCAATACTACCATTTTTT+TGG + Chr8:27421832-27421851 MsG0880043593.01.T01:intron 30.0%
AAAAATGTGAAACCCTTTGG+AGG + Chr8:27421151-27421170 MsG0880043593.01.T01:intron 35.0%
AAGACCACAAAGTCGAAAAA+TGG + Chr8:27422122-27422141 MsG0880043593.01.T01:intron 35.0%
AAGCAAACTTCTTAATGTGG+TGG - Chr8:27421292-27421311 None:intergenic 35.0%
ACGATAAGTATAGTGTGTGT+TGG + Chr8:27421764-27421783 MsG0880043593.01.T01:intron 35.0%
ACGGAGTAAGACCAAAAAAA+TGG - Chr8:27421846-27421865 None:intergenic 35.0%
AGAAATGAAGAGGAACAACT+GGG - Chr8:27423008-27423027 None:intergenic 35.0%
AGCAAGCAAACTTCTTAATG+TGG - Chr8:27421295-27421314 None:intergenic 35.0%
AGGGAAACCATTCTCTTATT+TGG - Chr8:27422469-27422488 None:intergenic 35.0%
ATATGAGTAGCACTCTTAAC+TGG + Chr8:27423061-27423080 MsG0880043593.01.T01:CDS 35.0%
ATATGGCAGATGAAGGAATT+AGG + Chr8:27420653-27420672 MsG0880043593.01.T01:CDS 35.0%
ATGAAGAGGAACACTGAAAT+TGG - Chr8:27421631-27421650 None:intergenic 35.0%
CAAAATCAATAGCGAGCATT+TGG + Chr8:27422708-27422727 MsG0880043593.01.T01:intron 35.0%
CAATTGGAGAGAAAATAGAG+TGG + Chr8:27420868-27420887 MsG0880043593.01.T01:CDS 35.0%
CATCAATGGTTCACAGAAAA+AGG + Chr8:27422218-27422237 MsG0880043593.01.T01:intron 35.0%
CATGAATGGGAGAAAACAAA+AGG + Chr8:27422654-27422673 MsG0880043593.01.T01:intron 35.0%
CCAATTGTAGAGAATTGGAT+GGG - Chr8:27420855-27420874 None:intergenic 35.0%
CTTCAAAATAACTTCAGGAC+AGG - Chr8:27421893-27421912 None:intergenic 35.0%
GAACTGAAGAACACTGAAAT+TGG - Chr8:27421609-27421628 None:intergenic 35.0%
GTTCAAACAGCAAAGTTAGA+AGG + Chr8:27422158-27422177 MsG0880043593.01.T01:intron 35.0%
TAACATTCAAGCCATATGCA+TGG - Chr8:27421999-27422018 None:intergenic 35.0%
TAAGCTTTCAACGTAAACCT+TGG - Chr8:27420963-27420982 None:intergenic 35.0%
TAATTCTATACTGTGGTGCT+CGG + Chr8:27420937-27420956 MsG0880043593.01.T01:intron 35.0%
TACTGGCACTAATAAGATAG+TGG + Chr8:27422915-27422934 MsG0880043593.01.T01:CDS 35.0%
TATATAAGGGTTAAGCAGGT+TGG - Chr8:27422263-27422282 None:intergenic 35.0%
TATGGCAGATGAAGGAATTA+GGG + Chr8:27420654-27420673 MsG0880043593.01.T01:CDS 35.0%
TCCAATTGTAGAGAATTGGA+TGG - Chr8:27420856-27420875 None:intergenic 35.0%
TCTCTCCAATTGTAGAGAAT+TGG - Chr8:27420860-27420879 None:intergenic 35.0%
TGCAGAAGAGTAATGTTACA+TGG - Chr8:27422761-27422780 None:intergenic 35.0%
TGGACTGATAAATCATGGTT+AGG + Chr8:27422844-27422863 MsG0880043593.01.T01:intron 35.0%
! CAACTTTGAAAGGGTTTGTT+TGG + Chr8:27421793-27421812 MsG0880043593.01.T01:intron 35.0%
! CATTTTCACCAAAGTACGAA+TGG - Chr8:27420385-27420404 None:intergenic 35.0%
! GAATTTAGGGTTCATCGATT+TGG - Chr8:27421513-27421532 None:intergenic 35.0%
! TGTTTCTAAGTTTCTACGCA+AGG - Chr8:27422383-27422402 None:intergenic 35.0%
!! CTGAATGGACTGATAAATCA+TGG + Chr8:27422839-27422858 MsG0880043593.01.T01:intron 35.0%
!! GAGAGTATGTTCCTCTTTTA+TGG + Chr8:27420996-27421015 MsG0880043593.01.T01:intron 35.0%
!! GATTTTGAGAATGTGAGATG+TGG - Chr8:27421490-27421509 None:intergenic 35.0%
!!! GGAGTTTTGGAGATTATGTT+TGG + Chr8:27420327-27420346 MsG0880043593.01.T01:CDS 35.0%
AAATAGAGTGGAGCGAACAA+AGG + Chr8:27420880-27420899 MsG0880043593.01.T01:CDS 40.0%
ACGTTGTAATGGCCAAGAAA+CGG - Chr8:27420212-27420231 None:intergenic 40.0%
ACTCCGTCCAATATCTTAGT+TGG + Chr8:27421859-27421878 MsG0880043593.01.T01:intron 40.0%
AGAGAAATGTCTCCTCCAAA+GGG - Chr8:27421166-27421185 None:intergenic 40.0%
AGAGAATTGGATGGGATTCT+TGG - Chr8:27420847-27420866 None:intergenic 40.0%
ATATTCAGTTGTTGTCGACG+TGG - Chr8:27420293-27420312 None:intergenic 40.0%
ATGCAGGATGATACAAGCTT+TGG + Chr8:27422587-27422606 MsG0880043593.01.T01:intron 40.0%
CCCATCCAATTCTCTACAAT+TGG + Chr8:27420852-27420871 MsG0880043593.01.T01:CDS 40.0%
CGGCGAAAATACCCAAAATT+TGG - Chr8:27420161-27420180 None:intergenic 40.0%
GAGAAATGAAGAGGAACAAC+TGG - Chr8:27423009-27423028 None:intergenic 40.0%
GAGTAGCACTCTTAATTGGT+TGG + Chr8:27420427-27420446 MsG0880043593.01.T01:CDS 40.0%
GGCATTTCATCAAAATCACG+AGG - Chr8:27420557-27420576 None:intergenic 40.0%
GGGAGAACCATTTGATGTTT+AGG + Chr8:27422675-27422694 MsG0880043593.01.T01:intron 40.0%
GTTCCTCTTCATTTCTCCTT+TGG + Chr8:27423012-27423031 MsG0880043593.01.T01:CDS 40.0%
TACCAGTGTATCAGTCTCTT+CGG - Chr8:27420813-27420832 None:intergenic 40.0%
TGAGAGCGAACTGGAATTTA+GGG - Chr8:27421526-27421545 None:intergenic 40.0%
TTGAGAGCGAACTGGAATTT+AGG - Chr8:27421527-27421546 None:intergenic 40.0%
! ATAGAAGTGTGGCTATATGC+AGG + Chr8:27422571-27422590 MsG0880043593.01.T01:intron 40.0%
! GGTTTGTTTGGCTGATATGT+GGG + Chr8:27421805-27421824 MsG0880043593.01.T01:intron 40.0%
! TCCTTTGGAGGAAAACATGA+GGG + Chr8:27423027-27423046 MsG0880043593.01.T01:CDS 40.0%
! TCTGCGAGAATTCTCAGTTT+TGG + Chr8:27422952-27422971 MsG0880043593.01.T01:CDS 40.0%
! TTGTCGACGTGGATTGTAAT+TGG - Chr8:27420282-27420301 None:intergenic 40.0%
AATGGCCAAGAAACGGGAAA+GGG - Chr8:27420205-27420224 None:intergenic 45.0%
AATTGGATGGGATTCTTGGC+TGG - Chr8:27420843-27420862 None:intergenic 45.0%
ACGAATGGACAGGAACAACA+GGG - Chr8:27420370-27420389 None:intergenic 45.0%
AGCAAATCTTGAGAGCGAAC+TGG - Chr8:27421535-27421554 None:intergenic 45.0%
CATCAAAATCACGAGGCAGA+CGG - Chr8:27420550-27420569 None:intergenic 45.0%
CCTCCAAAGGAGAAATGAAG+AGG - Chr8:27423018-27423037 None:intergenic 45.0%
CCTCTTCATTTCTCCTTTGG+AGG + Chr8:27423015-27423034 MsG0880043593.01.T01:CDS 45.0%
CGTTGTAATGGCCAAGAAAC+GGG - Chr8:27420211-27420230 None:intergenic 45.0%
CTGCCAATTGTTGCTGTGTT+GGG + Chr8:27420584-27420603 MsG0880043593.01.T01:CDS 45.0%
GACCAAAGGTGACGTTGTAA+TGG - Chr8:27420223-27420242 None:intergenic 45.0%
GAGAGAAATGTCTCCTCCAA+AGG - Chr8:27421167-27421186 None:intergenic 45.0%
GAGTAGCACTCTTAACTGGT+TGG + Chr8:27423065-27423084 MsG0880043593.01.T01:CDS 45.0%
GTCTCTTCGGAAAGAAGAAG+CGG - Chr8:27420800-27420819 None:intergenic 45.0%
GTGACGAAATGAACAAGAGC+AGG - Chr8:27421468-27421487 None:intergenic 45.0%
GTTCCTGTCCATTCGTACTT+TGG + Chr8:27420374-27420393 MsG0880043593.01.T01:CDS 45.0%
TAATGGCCAAGAAACGGGAA+AGG - Chr8:27420206-27420225 None:intergenic 45.0%
TACGAATGGACAGGAACAAC+AGG - Chr8:27420371-27420390 None:intergenic 45.0%
TCACCAAAGTACGAATGGAC+AGG - Chr8:27420380-27420399 None:intergenic 45.0%
TCTGCCAATTGTTGCTGTGT+TGG + Chr8:27420583-27420602 MsG0880043593.01.T01:CDS 45.0%
TGCCAATTGTTGCTGTGTTG+GGG + Chr8:27420585-27420604 MsG0880043593.01.T01:CDS 45.0%
TTCCGAAGAGACTGATACAC+TGG + Chr8:27420808-27420827 MsG0880043593.01.T01:CDS 45.0%
! ACCCTCATGTTTTCCTCCAA+AGG - Chr8:27423031-27423050 None:intergenic 45.0%
! CAGGATGATACAAGCTTTGG+CGG + Chr8:27422590-27422609 MsG0880043593.01.T01:intron 45.0%
! CTCCTTTGGAGGAAAACATG+AGG + Chr8:27423026-27423045 MsG0880043593.01.T01:CDS 45.0%
! GGATTTTGTGGCGAGTCTTT+GGG + Chr8:27421727-27421746 MsG0880043593.01.T01:intron 45.0%
! GGGTTTGTTTGGCTGATATG+TGG + Chr8:27421804-27421823 MsG0880043593.01.T01:intron 45.0%
! TGGATTTTGTGGCGAGTCTT+TGG + Chr8:27421726-27421745 MsG0880043593.01.T01:intron 45.0%
! TGTTTTGCAGCTGCTCCTAT+TGG + Chr8:27422287-27422306 MsG0880043593.01.T01:intron 45.0%
ACAGCAACAATTGGCAGAGC+AGG - Chr8:27420581-27420600 None:intergenic 50.0%
ACGTTGCTGAAGCTAGATGC+TGG + Chr8:27421683-27421702 MsG0880043593.01.T01:intron 50.0%
CCAATTGTTGCTGTGTTGGG+GGG + Chr8:27420587-27420606 MsG0880043593.01.T01:CDS 50.0%
CCGAGACATACGACCAATAC+CGG + Chr8:27423158-27423177 MsG0880043593.01.T01:CDS 50.0%
GCCAATTGTTGCTGTGTTGG+GGG + Chr8:27420586-27420605 MsG0880043593.01.T01:CDS 50.0%
GGCCATTACAACGTCACCTT+TGG + Chr8:27420218-27420237 MsG0880043593.01.T01:CDS 50.0%
! AGCATCTAGCTTCAGCAACG+TGG - Chr8:27421684-27421703 None:intergenic 50.0%
! TGTGGCGAGTCTTTGGGTTT+GGG + Chr8:27421733-27421752 MsG0880043593.01.T01:intron 50.0%
! TTGTGGCGAGTCTTTGGGTT+TGG + Chr8:27421732-27421751 MsG0880043593.01.T01:intron 50.0%
!! CCGGTATTGGTCGTATGTCT+CGG - Chr8:27423161-27423180 None:intergenic 50.0%
CCCCCCAACACAGCAACAAT+TGG - Chr8:27420590-27420609 None:intergenic 55.0%
GCAACAATTGGCAGAGCAGG+TGG - Chr8:27420578-27420597 None:intergenic 55.0%
GCCAAGAAACGGGAAAGGGT+GGG - Chr8:27420201-27420220 None:intergenic 55.0%
GGGCTGCATGGCTGTGAAAA+CGG - Chr8:27420181-27420200 None:intergenic 55.0%
TATACTGTGGTGCTCGGCCA+AGG + Chr8:27420943-27420962 MsG0880043593.01.T01:intron 55.0%
GCCCACCCTTTCCCGTTTCT+TGG + Chr8:27420197-27420216 MsG0880043593.01.T01:CDS 60.0%
GGCCAAGAAACGGGAAAGGG+TGG - Chr8:27420202-27420221 None:intergenic 60.0%
!! ACGGGAAAGGGTGGGCTGCA+TGG - Chr8:27420193-27420212 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 27420152 27423191 27420152 ID=MsG0880043593.01;Name=MsG0880043593.01
Chr8 mRNA 27420152 27423191 27420152 ID=MsG0880043593.01.T01;Parent=MsG0880043593.01;Name=MsG0880043593.01.T01;_AED=0.38;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|369
Chr8 exon 27420152 27420935 27420152 ID=MsG0880043593.01.T01:exon:8682;Parent=MsG0880043593.01.T01
Chr8 exon 27422866 27423191 27422866 ID=MsG0880043593.01.T01:exon:8683;Parent=MsG0880043593.01.T01
Chr8 CDS 27420152 27420935 27420152 ID=MsG0880043593.01.T01:cds;Parent=MsG0880043593.01.T01
Chr8 CDS 27422866 27423191 27422866 ID=MsG0880043593.01.T01:cds;Parent=MsG0880043593.01.T01
Gene Sequence

>MsG0880043593.01.T01

ATGTCTCCAAATTTTGGGTATTTTCGCCGTTTTCACAGCCATGCAGCCCACCCTTTCCCGTTTCTTGGCCATTACAACGTCACCTTTGGTCTTGATAATTCTACTGACACTTATAAGATAGTGGCGTCCAATTACAATCCACGTCGACAACAACTGAATATCAATGTAAAAATTTGGAGTTTTGGAGATTATGTTTGGAAAGAGATTCAAAATTTCCCTGTTGTTCCTGTCCATTCGTACTTTGGTGAAAATGATGTGCATAATGCTGTGTATTTGAGTAGCACTCTTAATTGGTTGGCTATTCACAATGACTTTGACTATGATGTTAAGAATCTTAAAGTTGAGCAGTTTGTTATTGTTTCACTCGATTTGGGAACTGAGACATACAATCAGTACCGTCTGCCTCGTGATTTTGATGAAATGCCACCTGCTCTGCCAATTGTTGCTGTGTTGGGGGGCTTCCTTTGTTGTTCCTATTTTTACAAGGAAACCGATTTTCTTATATGGCAGATGAAGGAATTAGGGAATGATGAATCTTGGACTCAATTTCTTAAAATAAGGTATCAAAATCTTCAAATAAATCATGACTACTTTAGTGACGAAGAGTTTATCCATGACAAGATAAAGTATCATTTTCAATTGGTGCCGCTTCTTCTTTCCGAAGAGACTGATACACTGGTACTTAAGACCAGCCAAGAATCCCATCCAATTCTCTACAATTGGAGAGAAAATAGAGTGGAGCGAACAAAGGTTACAACAAGTAGTACTCTTACCGATAATAGTAGAATGCAAAAACGTATTATGGTACAAGATTGCTTTGGTTATGATAGTTCTACTGGCACTAATAAGATAGTGGCGTACACTAACAATTCTGCGAGAATTCTCAGTTTTGGTGATAATGTTTGGAGAGAGATTCAAAGTTTCCCAGTTGTTCCTCTTCATTTCTCCTTTGGAGGAAAACATGAGGGTGCTGCTGTGTATATGAGTAGCACTCTTAACTGGTTGGCTGTTCACAATATTTTTTATTTGAAGGATGTCATTGTTGACCAATTTTATTGTTTCACTCAATTTGGGCACCGAGACATACGACCAATACCGGCTTCCTCGTGA
Protein sequence

>MsG0880043593.01.T01

MSPNFGYFRRFHSHAAHPFPFLGHYNVTFGLDNSTDTYKIVASNYNPRRQQLNINVKIWSFGDYVWKEIQNFPVVPVHSYFGENDVHNAVYLSSTLNWLAIHNDFDYDVKNLKVEQFVIVSLDLGTETYNQYRLPRDFDEMPPALPIVAVLGGFLCCSYFYKETDFLIWQMKELGNDESWTQFLKIRYQNLQINHDYFSDEEFIHDKIKYHFQLVPLLLSEETDTLVLKTSQESHPILYNWRENRVERTKVTTSSTLTDNSRMQKRIMVQDCFGYDSSTGTNKIVAYTNNSARILSFGDNVWREIQSFPVVPLHFSFGGKHEGAAVYMSSTLNWLAVHNIFYLKDVIVDQFYCFTQFGHRDIRPIPASS*