AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002947.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002947.01.T01 MTR_1g029650 43.230 421 117 13 1 316 1 404 3.42e-84 260
MsG0180002947.01.T01 MTR_1g015730 41.469 422 107 13 5 317 6 396 1.51e-72 229
MsG0180002947.01.T01 MTR_1g015740 42.857 399 75 10 1 317 1 328 1.33e-71 225
MsG0180002947.01.T01 MTR_4g013180 39.050 379 130 14 10 292 13 386 5.91e-60 199
MsG0180002947.01.T01 MTR_7g077970 36.009 436 147 13 1 317 1 423 1.76e-57 191
MsG0180002947.01.T01 MTR_7g078900 41.026 351 125 13 32 317 91 424 2.28e-57 191
MsG0180002947.01.T01 MTR_1g088120 36.131 429 143 17 1 316 1 411 4.63e-56 187
MsG0180002947.01.T01 MTR_4g013185 39.776 357 126 15 31 316 88 426 3.90e-55 185
MsG0180002947.01.T01 MTR_7g078040 37.190 363 144 12 26 317 85 434 3.04e-53 181
MsG0180002947.01.T01 MTR_4g013175 38.202 356 135 12 31 317 88 427 1.02e-52 179
MsG0180002947.01.T01 MTR_7g079160 40.719 334 115 16 32 289 87 413 9.74e-52 177
MsG0180002947.01.T01 MTR_5g058620 44.876 283 86 11 95 317 11 283 2.35e-51 171
MsG0180002947.01.T01 MTR_1g058870 44.876 283 86 11 95 317 11 283 2.35e-51 171
MsG0180002947.01.T01 MTR_7g077070 35.267 431 143 16 8 317 16 431 2.84e-51 175
MsG0180002947.01.T01 MTR_7g078840 39.198 324 109 15 31 277 88 400 5.87e-51 174
MsG0180002947.01.T01 MTR_1g016960 42.014 288 109 9 32 317 26 257 6.03e-51 169
MsG0180002947.01.T01 MTR_4g128320 37.829 304 104 8 8 283 18 264 4.01e-49 166
MsG0180002947.01.T01 MTR_0242s0060 32.564 433 153 13 5 317 6 419 6.36e-49 169
MsG0180002947.01.T01 MTR_0242s0040 32.564 433 153 13 5 317 6 419 6.36e-49 169
MsG0180002947.01.T01 MTR_4g008790 37.812 320 113 11 33 290 132 427 5.01e-48 167
MsG0180002947.01.T01 MTR_7g077990 36.451 417 128 15 8 321 17 399 1.49e-47 165
MsG0180002947.01.T01 MTR_7g078860 40.909 308 108 14 32 280 88 380 2.70e-47 164
MsG0180002947.01.T01 MTR_7g078940 40.391 307 137 13 31 314 117 400 6.92e-47 163
MsG0180002947.01.T01 MTR_6g055210 32.041 387 141 9 8 279 22 401 1.10e-46 164
MsG0180002947.01.T01 MTR_3g013470 37.764 331 131 11 13 291 53 360 7.59e-45 157
MsG0180002947.01.T01 MTR_7g056503 34.417 369 147 11 5 282 18 382 5.39e-44 155
MsG0180002947.01.T01 MTR_7g077910 37.079 356 141 15 26 317 1 337 4.73e-43 151
MsG0180002947.01.T01 MTR_7g062060 32.808 381 141 12 8 279 12 386 2.47e-42 151
MsG0180002947.01.T01 MTR_4g030110 31.534 352 152 10 8 276 30 375 8.97e-40 144
MsG0180002947.01.T01 MTR_5g069760 33.333 396 146 17 8 316 6 370 6.95e-39 141
MsG0180002947.01.T01 MTR_7g061050 32.653 392 152 14 2 295 7 384 8.06e-39 141
MsG0180002947.01.T01 MTR_7g055977 33.243 370 132 15 8 277 7 361 1.66e-38 140
MsG0180002947.01.T01 MTR_5g069930 31.762 403 150 16 8 316 6 377 2.01e-38 140
MsG0180002947.01.T01 MTR_7g060940 31.452 372 142 11 5 279 19 374 7.05e-38 139
MsG0180002947.01.T01 MTR_7g056023 39.076 238 118 9 8 228 30 257 2.96e-37 134
MsG0180002947.01.T01 MTR_6g016285 31.218 394 140 13 5 279 18 399 9.19e-37 137
MsG0180002947.01.T01 MTR_0128s0020 31.165 369 157 15 1 277 10 373 1.48e-36 135
MsG0180002947.01.T01 MTR_1g442850 31.868 364 138 13 10 276 7 357 3.23e-36 134
MsG0180002947.01.T01 MTR_8g066440 31.593 383 157 16 10 292 25 402 3.83e-36 134
MsG0180002947.01.T01 MTR_0649s0020 30.488 410 162 15 1 314 4 386 4.63e-36 134
MsG0180002947.01.T01 MTR_4g129190 31.325 415 151 17 7 316 5 390 6.41e-36 134
MsG0180002947.01.T01 MTR_7g055870 31.486 397 132 14 8 273 13 400 1.13e-35 134
MsG0180002947.01.T01 MTR_7g061090 32.576 396 148 13 8 295 22 406 2.00e-35 133
MsG0180002947.01.T01 MTR_7g028660 30.370 405 156 13 5 316 8 379 2.06e-35 132
MsG0180002947.01.T01 MTR_7g060960 33.867 375 146 16 5 314 29 366 2.28e-35 132
MsG0180002947.01.T01 MTR_7g445890 31.624 351 161 10 4 276 12 361 6.88e-35 131
MsG0180002947.01.T01 MTR_7g057270 32.454 379 140 15 8 279 26 395 1.14e-34 131
MsG0180002947.01.T01 MTR_7g061060 31.795 390 153 13 2 292 7 382 4.33e-34 129
MsG0180002947.01.T01 MTR_4g019990 30.193 414 154 16 6 314 4 387 4.38e-34 129
MsG0180002947.01.T01 MTR_7g050480 31.868 364 143 10 8 280 22 371 4.93e-34 129
MsG0180002947.01.T01 MTR_2g047200 29.854 412 157 17 5 317 17 395 5.22e-34 129
MsG0180002947.01.T01 MTR_5g096710 30.923 401 157 16 8 314 23 397 6.80e-34 128
MsG0180002947.01.T01 MTR_7g050520 30.471 361 152 7 8 280 22 371 9.61e-34 128
MsG0180002947.01.T01 MTR_7g055930 30.370 405 138 14 8 279 13 406 1.10e-33 128
MsG0180002947.01.T01 MTR_6g065510 33.243 367 129 17 8 316 23 331 1.34e-33 126
MsG0180002947.01.T01 MTR_7g062100 33.702 362 140 15 8 277 24 377 1.56e-33 127
MsG0180002947.01.T01 MTR_0128s0070 29.558 362 160 12 6 277 20 376 1.80e-33 127
MsG0180002947.01.T01 MTR_2g047892 29.353 402 167 14 5 314 19 395 1.83e-33 127
MsG0180002947.01.T01 MTR_7g056737 32.520 369 144 16 5 280 19 375 1.90e-33 127
MsG0180002947.01.T01 MTR_3g080370 31.405 363 139 12 32 314 84 416 2.32e-33 128
MsG0180002947.01.T01 MTR_3g464470 31.313 396 163 15 6 314 5 378 2.91e-33 126
MsG0180002947.01.T01 MTR_2g010950 31.830 377 150 16 5 280 17 387 3.40e-33 127
MsG0180002947.01.T01 MTR_7g061010 32.419 401 147 15 5 314 19 386 3.53e-33 126
MsG0180002947.01.T01 MTR_7g055987 35.165 273 108 10 8 228 20 275 4.48e-33 125
MsG0180002947.01.T01 MTR_2g047878 30.829 386 158 16 2 314 13 362 5.18e-33 125
MsG0180002947.01.T01 MTR_4g030830 29.512 410 160 13 8 314 9 392 6.35e-33 125
MsG0180002947.01.T01 MTR_4g033495 31.099 373 146 12 5 276 24 386 8.60e-33 126
MsG0180002947.01.T01 MTR_7g066100 41.410 227 92 10 32 228 75 290 1.88e-32 124
MsG0180002947.01.T01 MTR_0707s0020 31.755 359 148 13 24 315 115 443 3.34e-32 125
MsG0180002947.01.T01 MTR_7g055830 32.853 347 125 15 8 273 13 332 3.95e-32 123
MsG0180002947.01.T01 MTR_7g056710 30.495 364 146 13 5 276 15 363 4.11e-32 123
MsG0180002947.01.T01 MTR_2g010920 30.075 399 148 14 5 280 17 407 4.30e-32 124
MsG0180002947.01.T01 MTR_5g056020 31.611 329 137 11 32 279 81 402 4.68e-32 125
MsG0180002947.01.T01 MTR_7g445750 33.677 291 115 12 8 228 23 305 7.76e-32 121
MsG0180002947.01.T01 MTR_0097s0030 30.618 356 149 12 8 277 14 357 7.82e-32 122
MsG0180002947.01.T01 MTR_2g047240 30.618 356 149 12 8 277 14 357 7.82e-32 122
MsG0180002947.01.T01 MTR_2g043410 29.343 426 150 16 8 314 22 415 8.75e-32 123
MsG0180002947.01.T01 MTR_7g009265 30.725 345 153 11 36 316 2 324 9.73e-32 121
MsG0180002947.01.T01 MTR_3g464500 30.750 400 163 16 6 314 25 401 1.12e-31 122
MsG0180002947.01.T01 MTR_7g113500 32.153 339 142 12 6 280 50 364 1.29e-31 122
MsG0180002947.01.T01 MTR_2g043400 29.882 425 149 15 8 314 23 416 1.38e-31 122
MsG0180002947.01.T01 MTR_7g070830 31.143 350 140 15 4 263 17 355 1.46e-31 122
MsG0180002947.01.T01 MTR_4g031020 26.897 435 169 13 8 315 15 427 1.55e-31 122
MsG0180002947.01.T01 MTR_2g461450 31.503 346 141 14 8 272 18 348 2.10e-31 121
MsG0180002947.01.T01 MTR_6g086920 31.157 337 139 10 24 279 127 451 2.23e-31 123
MsG0180002947.01.T01 MTR_7g052670 28.894 398 156 15 8 281 21 415 2.72e-31 122
MsG0180002947.01.T01 MTR_7g022600 29.049 389 161 16 2 277 15 401 2.77e-31 122
MsG0180002947.01.T01 MTR_4g011660 28.910 422 161 14 8 314 19 416 5.60e-31 121
MsG0180002947.01.T01 MTR_7g056717 32.425 367 143 14 5 278 19 373 6.19e-31 120
MsG0180002947.01.T01 MTR_4g024890 28.109 402 170 11 6 314 8 383 6.34e-31 120
MsG0180002947.01.T01 MTR_7g066850 28.753 393 165 12 5 294 20 400 1.00e-30 121
MsG0180002947.01.T01 MTR_7g056570 31.405 363 150 13 5 278 15 367 1.08e-30 120
MsG0180002947.01.T01 MTR_7g056290 29.195 435 149 17 8 317 22 422 1.92e-30 119
MsG0180002947.01.T01 MTR_0128s0010 30.959 365 149 14 8 277 21 377 2.23e-30 119
MsG0180002947.01.T01 MTR_5g068040 31.726 394 162 14 5 316 13 381 3.61e-30 118
MsG0180002947.01.T01 MTR_7g056170 28.922 408 165 12 8 314 75 458 3.74e-30 119
MsG0180002947.01.T01 MTR_7g056390 28.904 429 158 16 8 317 18 418 4.20e-30 118
MsG0180002947.01.T01 MTR_7g056260 39.631 217 104 9 26 228 78 281 5.97e-30 116
MsG0180002947.01.T01 MTR_7g070880 32.362 309 114 13 4 228 17 314 9.21e-30 117
MsG0180002947.01.T01 MTR_6g088385 29.144 374 127 12 5 315 20 318 1.60e-29 115
MsG0180002947.01.T01 MTR_7g078960 35.135 296 114 13 79 316 12 287 2.98e-29 114
MsG0180002947.01.T01 MTR_3g437520 29.517 393 141 13 8 276 23 403 3.18e-29 117
MsG0180002947.01.T01 MTR_7g052150 30.446 381 147 13 5 283 19 383 5.31e-29 115
MsG0180002947.01.T01 MTR_7g055953 35.714 252 85 9 116 316 90 315 5.86e-29 113
MsG0180002947.01.T01 MTR_4g030980 26.897 435 169 12 8 315 15 427 6.41e-29 115
MsG0180002947.01.T01 MTR_7g078880 36.283 226 97 7 139 318 105 329 6.90e-29 115
MsG0180002947.01.T01 MTR_3g072470 28.608 388 147 13 8 276 19 395 7.02e-29 115
MsG0180002947.01.T01 MTR_7g056003 28.774 424 161 16 4 314 11 406 1.55e-28 114
MsG0180002947.01.T01 MTR_4g030790 35.950 242 122 12 8 228 19 248 1.70e-28 112
MsG0180002947.01.T01 MTR_7g066000 26.877 413 164 18 8 316 25 403 2.47e-28 113
MsG0180002947.01.T01 MTR_6g017295 37.619 210 110 6 36 228 12 217 2.60e-28 115
MsG0180002947.01.T01 MTR_7g091630 29.899 398 154 12 2 279 20 412 3.06e-28 114
MsG0180002947.01.T01 MTR_7g030040 32.743 339 156 12 2 318 51 339 4.71e-28 111
MsG0180002947.01.T01 MTR_7g066840 29.589 365 151 12 8 277 23 376 1.36e-27 111
MsG0180002947.01.T01 MTR_6g092560 26.014 419 178 13 1 315 5 395 2.24e-27 111
MsG0180002947.01.T01 MTR_7g091640 34.130 293 119 12 2 228 23 307 2.45e-27 110
MsG0180002947.01.T01 MTR_4g030090 27.230 426 158 18 4 314 10 398 4.62e-27 110
MsG0180002947.01.T01 MTR_2g006360 29.167 360 158 12 8 314 46 361 8.15e-27 108
MsG0180002947.01.T01 MTR_1g071010 29.330 358 155 15 10 277 17 366 1.53e-26 108
MsG0180002947.01.T01 MTR_4g034860 29.808 312 140 9 33 276 91 391 3.80e-26 107
MsG0180002947.01.T01 MTR_7g066080 33.103 290 113 12 8 229 16 292 4.30e-26 107
MsG0180002947.01.T01 MTR_7g037670 31.290 310 156 14 6 277 21 311 5.36e-26 105
MsG0180002947.01.T01 MTR_0464s0020 27.621 391 154 13 8 276 23 406 1.41e-25 106
MsG0180002947.01.T01 MTR_7g066060 27.778 378 152 11 8 276 23 388 3.50e-25 105
MsG0180002947.01.T01 MTR_7g056760 30.245 367 150 15 5 272 20 379 5.02e-25 104
MsG0180002947.01.T01 MTR_5g011350 34.434 212 106 9 31 228 38 230 1.09e-24 100
MsG0180002947.01.T01 MTR_7g066030 30.104 289 124 10 8 228 21 299 1.47e-24 103
MsG0180002947.01.T01 MTR_7g066010 30.678 339 158 15 8 277 21 351 1.54e-24 102
MsG0180002947.01.T01 MTR_6g017305 31.206 282 115 8 93 314 18 280 3.40e-24 100
MsG0180002947.01.T01 MTR_7g061100 35.565 239 107 12 2 213 7 225 1.01e-23 99.8
MsG0180002947.01.T01 MTR_7g070937 43.382 136 58 5 110 227 6 140 1.09e-23 95.9
MsG0180002947.01.T01 MTR_2g047895 29.712 313 153 12 38 298 8 305 1.92e-23 99.0
MsG0180002947.01.T01 MTR_1g112010 29.655 290 123 10 67 315 75 324 4.68e-23 97.8
MsG0180002947.01.T01 MTR_7g056200 27.273 407 147 15 8 314 23 380 1.55e-22 97.1
MsG0180002947.01.T01 MTR_7g066040 35.238 210 103 8 65 243 22 229 4.50e-22 93.6
MsG0180002947.01.T01 MTR_2g437110 28.775 351 167 11 8 276 22 371 4.57e-22 96.7
MsG0180002947.01.T01 MTR_7g056797 28.610 367 148 14 8 272 23 377 4.93e-22 95.9
MsG0180002947.01.T01 MTR_5g043160 32.390 318 117 17 68 314 166 456 5.58e-22 96.3
MsG0180002947.01.T01 MTR_7g056173 34.052 232 89 5 109 279 20 248 1.10e-21 94.0
MsG0180002947.01.T01 MTR_6g017280 29.582 311 141 11 30 276 70 366 3.37e-21 93.6
MsG0180002947.01.T01 MTR_1g047490 29.352 293 98 11 4 228 18 269 3.88e-21 92.4
MsG0180002947.01.T01 MTR_3g009300 31.381 239 125 8 11 229 37 256 6.28e-21 92.4
MsG0180002947.01.T01 MTR_2g010900 30.741 270 138 12 32 264 44 301 8.70e-20 89.4
MsG0180002947.01.T01 MTR_4g030760 28.792 389 163 15 8 314 73 429 5.94e-19 87.4
MsG0180002947.01.T01 MTR_7g070440 32.061 262 119 13 8 221 7 257 1.33e-18 85.9
MsG0180002947.01.T01 MTR_6g081280 35.407 209 92 6 114 280 16 223 2.26e-18 83.2
MsG0180002947.01.T01 MTR_5g007610 27.509 269 137 9 11 229 44 304 5.46e-18 84.3
MsG0180002947.01.T01 MTR_4g129160 36.686 169 80 6 68 213 119 283 5.55e-18 84.0
MsG0180002947.01.T01 MTR_4g006350 26.650 409 187 16 5 312 491 887 1.66e-17 84.0
MsG0180002947.01.T01 MTR_5g057710 29.268 246 119 9 11 212 49 283 2.08e-17 82.8
MsG0180002947.01.T01 MTR_5g057790 28.846 260 126 10 11 222 49 297 2.30e-17 82.4
MsG0180002947.01.T01 MTR_1g094210 28.519 270 124 10 5 228 54 300 6.19e-17 81.3
MsG0180002947.01.T01 MTR_1g094210 28.519 270 124 10 5 228 54 300 8.04e-17 80.9
MsG0180002947.01.T01 MTR_7g070900 40.000 140 62 6 100 221 224 359 8.09e-17 81.3
MsG0180002947.01.T01 MTR_3g009240 30.153 262 125 13 3 220 32 279 1.39e-16 80.1
MsG0180002947.01.T01 MTR_8g030630 35.057 174 58 5 157 279 72 241 2.98e-16 79.3
MsG0180002947.01.T01 MTR_8g030630 30.556 180 69 5 136 275 277 440 2.55e-12 67.8
MsG0180002947.01.T01 MTR_7g034310 31.557 244 96 9 114 316 15 228 7.10e-16 75.9
MsG0180002947.01.T01 MTR_6g065980 27.984 243 112 11 11 212 19 239 1.59e-15 77.0
MsG0180002947.01.T01 MTR_5g069950 36.806 144 66 5 91 228 36 160 4.39e-15 73.6
MsG0180002947.01.T01 MTR_4g020000 31.878 229 96 9 103 276 99 322 4.90e-15 75.5
MsG0180002947.01.T01 MTR_3g036290 29.297 256 122 9 11 225 25 262 2.17e-14 73.6
MsG0180002947.01.T01 MTR_3g013740 28.413 271 120 11 3 212 39 296 2.44e-14 73.6
MsG0180002947.01.T01 MTR_4g024870 27.795 331 149 14 3 279 38 332 2.56e-14 73.6
MsG0180002947.01.T01 MTR_3g009310 29.231 260 123 12 3 215 38 283 2.85e-14 73.2
MsG0180002947.01.T01 MTR_6g042600 26.061 330 120 11 8 276 36 302 5.41e-14 72.4
MsG0180002947.01.T01 MTR_7g091610 31.461 178 70 4 149 274 46 223 6.20e-14 70.9
MsG0180002947.01.T01 MTR_7g050490 31.551 187 83 4 8 155 8 188 6.20e-14 69.7
MsG0180002947.01.T01 MTR_6g007135 29.658 263 127 13 8 221 26 279 8.41e-14 72.0
MsG0180002947.01.T01 MTR_2g029990 26.087 345 157 16 11 275 54 380 1.81e-13 70.9
MsG0180002947.01.T01 MTR_1g097560 25.974 308 155 13 7 265 35 318 8.81e-13 68.9
MsG0180002947.01.T01 MTR_2g060555 31.064 235 99 8 93 279 50 269 1.68e-12 67.0
MsG0180002947.01.T01 MTR_2g017720 30.319 188 76 8 140 279 101 281 2.80e-12 67.4
MsG0180002947.01.T01 MTR_8g062660 28.929 280 111 13 8 222 22 278 2.83e-12 67.8
MsG0180002947.01.T01 MTR_2g021190 26.590 346 154 16 11 275 24 350 3.22e-12 67.0
MsG0180002947.01.T01 MTR_3g010390 27.237 257 121 10 11 212 36 281 1.22e-11 65.5
MsG0180002947.01.T01 MTR_3g013770 27.778 252 122 8 11 212 36 277 1.27e-11 65.5
MsG0180002947.01.T01 MTR_4g055060 30.337 267 120 14 11 222 33 288 2.04e-11 64.7
MsG0180002947.01.T01 MTR_6g048140 26.820 261 121 11 4 212 36 278 4.99e-11 63.5
MsG0180002947.01.T01 MTR_3g096270 29.048 210 114 9 8 209 45 227 6.83e-11 62.4
MsG0180002947.01.T01 MTR_1g046600 35.897 117 41 5 31 131 125 223 7.83e-11 62.4
MsG0180002947.01.T01 MTR_4g030880 31.126 151 87 5 139 276 48 194 9.00e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGTTGATTATGAATATT+TGG 0.142483 1:-53651957 MsG0180002947.01.T01:CDS
TACTATTGTTTCTCTTGATT+TGG 0.179900 1:-53652372 MsG0180002947.01.T01:CDS
AGAGGTGAAAATTCTCAATT+TGG 0.182863 1:-53652537 MsG0180002947.01.T01:CDS
ACTATTGTTTCTCTTGATTT+GGG 0.198282 1:-53652371 MsG0180002947.01.T01:CDS
CATGATTGCTCTTAAGTATA+AGG 0.199587 1:+53652071 None:intergenic
ATATTTGGGTGATGTATATT+TGG 0.248000 1:-53651942 MsG0180002947.01.T01:CDS
CCAGATGAAGTCCTGGTGGC+TGG 0.281634 1:+53652671 None:intergenic
TTAAACACTGGCTCCGTGTT+TGG 0.307419 1:-53652706 MsG0180002947.01.T01:CDS
TTGCCAACTATTAGTGTGTT+GGG 0.312345 1:-53652290 MsG0180002947.01.T01:CDS
CACCACCACTTTATAAATTC+CGG 0.338308 1:+53652583 None:intergenic
TTGAAACAATTCTCTATAAT+AGG 0.340861 1:-53652045 MsG0180002947.01.T01:CDS
CCACCAAGGTCCAAAGTTAA+AGG 0.342506 1:+53652470 None:intergenic
GAAGATTTCCACTTTGCCTT+TGG 0.343986 1:-53652620 MsG0180002947.01.T01:CDS
GGCTCCGTGTTTGGAATGTT+TGG 0.354527 1:-53652697 MsG0180002947.01.T01:CDS
AATTGAAGAAGAGATCTAAC+AGG 0.373123 1:+53653042 None:intergenic
TCATCCTCAGAAAGAAATAA+TGG 0.401536 1:+53652100 None:intergenic
CCCTACGATGACTCGGTTGC+CGG 0.404777 1:-53653109 None:intergenic
CCAACTATAAAAGAGGCTTC+TGG 0.411997 1:+53652767 None:intergenic
GAGGTGAAAATTCTCAATTT+GGG 0.412841 1:-53652536 MsG0180002947.01.T01:CDS
AACAACGCTAGTTCTATTAT+CGG 0.414795 1:+53651973 None:intergenic
TTTATAGTTGGTTCCTGCAA+TGG 0.415590 1:-53652755 MsG0180002947.01.T01:CDS
ATTTGAGTGGCACTCTGAAC+TGG 0.416363 1:-53652427 MsG0180002947.01.T01:CDS
GCTCCTTTAACTTTGGACCT+TGG 0.433730 1:-53652473 MsG0180002947.01.T01:CDS
CTTGCCAACTATTAGTGTGT+TGG 0.439154 1:-53652291 MsG0180002947.01.T01:CDS
ATGATTGCTCTTAAGTATAA+GGG 0.439569 1:+53652072 None:intergenic
CCAGCCACCAGGACTTCATC+TGG 0.440301 1:-53652671 MsG0180002947.01.T01:CDS
GTTGTTGATTATGAATATTT+GGG 0.445944 1:-53651956 MsG0180002947.01.T01:CDS
TTTGGATGTGATAATTCAAC+CGG 0.451723 1:-53652602 MsG0180002947.01.T01:CDS
TAAGCTTTCAACATAATCTT+CGG 0.451790 1:+53651913 None:intergenic
GTGCCTCGTGGCTTTGATAA+AGG 0.456458 1:-53652323 MsG0180002947.01.T01:CDS
CAGATGAAGTCCTGGTGGCT+GGG 0.462600 1:+53652672 None:intergenic
TCCAAAGTTAAAGGAGCAAA+AGG 0.463629 1:+53652479 None:intergenic
CCTTTAACTTTGGACCTTGG+TGG 0.470915 1:-53652470 MsG0180002947.01.T01:CDS
GAAAATATGCTCTGTCATCA+AGG 0.480824 1:+53652131 None:intergenic
GGAGACATACAATAAATTCA+TGG 0.515165 1:-53652345 MsG0180002947.01.T01:CDS
AGATCGTCGGAGAGGTTCGC+CGG 0.522891 1:+53653090 None:intergenic
TGTTTCTCTTGATTTGGGGA+CGG 0.523807 1:-53652366 MsG0180002947.01.T01:CDS
TTCAACCGGAATTTATAAAG+TGG 0.529639 1:-53652588 MsG0180002947.01.T01:CDS
CTATTGTTTCTCTTGATTTG+GGG 0.539127 1:-53652370 MsG0180002947.01.T01:CDS
GACCCCAACACACTAATAGT+TGG 0.540080 1:+53652287 None:intergenic
GCAGGAACCAACTATAAAAG+AGG 0.551961 1:+53652760 None:intergenic
TGCCAACTATTAGTGTGTTG+GGG 0.553140 1:-53652289 MsG0180002947.01.T01:intron
GAAGCCATTATTTCTTTCTG+AGG 0.557872 1:-53652104 MsG0180002947.01.T01:CDS
GTCGATTATGTGTATTTGAG+TGG 0.565069 1:-53652440 MsG0180002947.01.T01:CDS
GGTTGAATTATCACATCCAA+AGG 0.578021 1:+53652604 None:intergenic
ATAACAGAACTAAGCGAACA+TGG 0.579263 1:-53652018 MsG0180002947.01.T01:CDS
CTGATGGCGAATTTAAACAC+TGG 0.585651 1:-53652718 MsG0180002947.01.T01:CDS
ATGTTTGGAACCCAGCCACC+AGG 0.587183 1:-53652682 MsG0180002947.01.T01:CDS
AACCGGAATTTATAAAGTGG+TGG 0.587786 1:-53652585 MsG0180002947.01.T01:CDS
TTCATAACCCTACGATGACT+CGG 0.591965 1:-53653116 None:intergenic
GTGAAAATTCTCAATTTGGG+TGG 0.592035 1:-53652533 MsG0180002947.01.T01:CDS
TATCACATCCAAAGGCAAAG+TGG 0.609259 1:+53652612 None:intergenic
AGTGGAAATCTTCACCGCAA+TGG 0.611388 1:+53652630 None:intergenic
CTAATAGTTGGCAAGTAAAG+CGG 0.635118 1:+53652299 None:intergenic
GAGTGGCACTCTGAACTGGT+TGG 0.646597 1:-53652423 MsG0180002947.01.T01:CDS
GGTTCCAAACATTCCAAACA+CGG 0.653930 1:+53652693 None:intergenic
AATAAATTCATGGTGCCTCG+TGG 0.655442 1:-53652335 MsG0180002947.01.T01:CDS
ATTGAAGAAGAGATCTAACA+GGG 0.682088 1:+53653043 None:intergenic
AGGGAGAAATGAAAGTACCT+CGG 0.683012 1:+53653062 None:intergenic
TACCTCGGCGATGAGATCGT+CGG 0.684832 1:+53653077 None:intergenic
TAAGCAATTGAAAACAACAG+AGG 0.687087 1:-53652555 MsG0180002947.01.T01:CDS
AATCGACATAATCGCCACCA+AGG 0.689702 1:+53652456 None:intergenic
CGGCGATGAGATCGTCGGAG+AGG 0.702275 1:+53653082 None:intergenic
CTCCGACGATCTCATCGCCG+AGG 0.711170 1:-53653079 MsG0180002947.01.T01:CDS
TTTCGAATATACGATCGATG+GGG 0.733330 1:+53652849 None:intergenic
GGACCTTTATCAAAGCCACG+AGG 0.829042 1:+53652320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAACTTACTTTCAAAAAT+TGG + Chr1:53653092-53653111 None:intergenic 20.0%
!! TATGGAAATAAGAAAAACAA+AGG + Chr1:53652717-53652736 None:intergenic 20.0%
!! TTGAAACAATTCTCTATAAT+AGG - Chr1:53652931-53652950 MsG0180002947.01.T01:intron 20.0%
!!! GTTGTTGATTATGAATATTT+GGG - Chr1:53653020-53653039 MsG0180002947.01.T01:intron 20.0%
!!! TTGTTTTTCTTATTTCCATA+AGG - Chr1:53652717-53652736 MsG0180002947.01.T01:CDS 20.0%
! ATACTTAAATGATGACATTG+AGG - Chr1:53652080-53652099 MsG0180002947.01.T01:CDS 25.0%
! ATATTTGGGTGATGTATATT+TGG - Chr1:53653034-53653053 MsG0180002947.01.T01:intron 25.0%
! ATGATTGCTCTTAAGTATAA+GGG + Chr1:53652907-53652926 None:intergenic 25.0%
! TAAGCTTTCAACATAATCTT+CGG + Chr1:53653066-53653085 None:intergenic 25.0%
!! AAAAGTTGGATTGGAAATTA+GGG + Chr1:53651986-53652005 None:intergenic 25.0%
!! ACTATTGTTTCTCTTGATTT+GGG - Chr1:53652605-53652624 MsG0180002947.01.T01:CDS 25.0%
!! CGTTGTTGATTATGAATATT+TGG - Chr1:53653019-53653038 MsG0180002947.01.T01:intron 25.0%
!! TACTATTGTTTCTCTTGATT+TGG - Chr1:53652604-53652623 MsG0180002947.01.T01:CDS 25.0%
!! TTTGAATATTTTCACCATTG+CGG - Chr1:53652332-53652351 MsG0180002947.01.T01:CDS 25.0%
AAAAAGAATCAAACCATTGC+AGG + Chr1:53652237-53652256 None:intergenic 30.0%
AATTGAAGAAGAGATCTAAC+AGG + Chr1:53651937-53651956 None:intergenic 30.0%
AGAGGTGAAAATTCTCAATT+TGG - Chr1:53652439-53652458 MsG0180002947.01.T01:CDS 30.0%
AGAGTGAGAATCGTTAAAAA+CGG + Chr1:53652165-53652184 None:intergenic 30.0%
ATCTAGCAGATGAAGAAATT+TGG - Chr1:53652754-53652773 MsG0180002947.01.T01:CDS 30.0%
ATTGAAGAAGAGATCTAACA+GGG + Chr1:53651936-53651955 None:intergenic 30.0%
CAATTTCACAAAAGTTGGAT+TGG + Chr1:53651995-53652014 None:intergenic 30.0%
CATGATTGCTCTTAAGTATA+AGG + Chr1:53652908-53652927 None:intergenic 30.0%
GAGGTGAAAATTCTCAATTT+GGG - Chr1:53652440-53652459 MsG0180002947.01.T01:CDS 30.0%
GGAGACATACAATAAATTCA+TGG - Chr1:53652631-53652650 MsG0180002947.01.T01:CDS 30.0%
TAAGCAATTGAAAACAACAG+AGG - Chr1:53652421-53652440 MsG0180002947.01.T01:CDS 30.0%
TCATCCTCAGAAAGAAATAA+TGG + Chr1:53652879-53652898 None:intergenic 30.0%
TTCAACCGGAATTTATAAAG+TGG - Chr1:53652388-53652407 MsG0180002947.01.T01:CDS 30.0%
TTTGGATGTGATAATTCAAC+CGG - Chr1:53652374-53652393 MsG0180002947.01.T01:CDS 30.0%
! AATTTGGAGTTGAACATTCT+TGG - Chr1:53652770-53652789 MsG0180002947.01.T01:CDS 30.0%
! CAAAAGTTGGATTGGAAATT+AGG + Chr1:53651987-53652006 None:intergenic 30.0%
! CTATTGTTTCTCTTGATTTG+GGG - Chr1:53652606-53652625 MsG0180002947.01.T01:CDS 30.0%
! GTTTTTGTGATTGTGATTTC+TGG + Chr1:53652023-53652042 None:intergenic 30.0%
! TTTTCGAATATACGATCGAT+GGG + Chr1:53652131-53652150 None:intergenic 30.0%
!! AACAACGCTAGTTCTATTAT+CGG + Chr1:53653006-53653025 None:intergenic 30.0%
AACCGGAATTTATAAAGTGG+TGG - Chr1:53652391-53652410 MsG0180002947.01.T01:CDS 35.0%
AGAATCGTTAAAAACGGTGA+AGG + Chr1:53652159-53652178 None:intergenic 35.0%
AGGTGCAATTTCACAAAAGT+TGG + Chr1:53652000-53652019 None:intergenic 35.0%
ATAACAGAACTAAGCGAACA+TGG - Chr1:53652958-53652977 MsG0180002947.01.T01:intron 35.0%
CACCACCACTTTATAAATTC+CGG + Chr1:53652396-53652415 None:intergenic 35.0%
CATCTGCTAGATACAGAAAT+CGG + Chr1:53652746-53652765 None:intergenic 35.0%
CTAATAGTTGGCAAGTAAAG+CGG + Chr1:53652680-53652699 None:intergenic 35.0%
CTTAAATGATGACATTGAGG+AGG - Chr1:53652083-53652102 MsG0180002947.01.T01:CDS 35.0%
GAAAATATGCTCTGTCATCA+AGG + Chr1:53652848-53652867 None:intergenic 35.0%
GGTTGAATTATCACATCCAA+AGG + Chr1:53652375-53652394 None:intergenic 35.0%
GTCGATTATGTGTATTTGAG+TGG - Chr1:53652536-53652555 MsG0180002947.01.T01:CDS 35.0%
GTGAAAATTCTCAATTTGGG+TGG - Chr1:53652443-53652462 MsG0180002947.01.T01:CDS 35.0%
TCAGATGTGTGAGTAAATCT+TGG - Chr1:53651956-53651975 MsG0180002947.01.T01:CDS 35.0%
TCCAAAGTTAAAGGAGCAAA+AGG + Chr1:53652500-53652519 None:intergenic 35.0%
TTGCCAACTATTAGTGTGTT+GGG - Chr1:53652686-53652705 MsG0180002947.01.T01:CDS 35.0%
TTTCGAATATACGATCGATG+GGG + Chr1:53652130-53652149 None:intergenic 35.0%
! AAATTTTCCAGATGAAGTCC+TGG + Chr1:53652315-53652334 None:intergenic 35.0%
! GAAGCCATTATTTCTTTCTG+AGG - Chr1:53652872-53652891 MsG0180002947.01.T01:intron 35.0%
! GGTTTGATTCTTTTTGCTGA+TGG - Chr1:53652242-53652261 MsG0180002947.01.T01:intron 35.0%
! GTTTTCGAATATACGATCGA+TGG + Chr1:53652132-53652151 None:intergenic 35.0%
! TACAGAAATCGGTTTCCTTA+TGG + Chr1:53652735-53652754 None:intergenic 35.0%
! TTTATAGTTGGTTCCTGCAA+TGG - Chr1:53652221-53652240 MsG0180002947.01.T01:intron 35.0%
! TTTGTGATTGTGATTTCTGG+AGG + Chr1:53652020-53652039 None:intergenic 35.0%
!! TCCTTTTGCTCCTTTAACTT+TGG - Chr1:53652496-53652515 MsG0180002947.01.T01:CDS 35.0%
AATAAATTCATGGTGCCTCG+TGG - Chr1:53652641-53652660 MsG0180002947.01.T01:CDS 40.0%
ATGACATTGAGGAGGAATAC+AGG - Chr1:53652091-53652110 MsG0180002947.01.T01:CDS 40.0%
CCAACTATAAAAGAGGCTTC+TGG + Chr1:53652212-53652231 None:intergenic 40.0%
CGTTAAAAACGGTGAAGGAA+GGG + Chr1:53652154-53652173 None:intergenic 40.0%
CTTGCCAACTATTAGTGTGT+TGG - Chr1:53652685-53652704 MsG0180002947.01.T01:CDS 40.0%
GAAGATTTCCACTTTGCCTT+TGG - Chr1:53652356-53652375 MsG0180002947.01.T01:CDS 40.0%
GCAGGAACCAACTATAAAAG+AGG + Chr1:53652219-53652238 None:intergenic 40.0%
GGTTCCAAACATTCCAAACA+CGG + Chr1:53652286-53652305 None:intergenic 40.0%
TATCACATCCAAAGGCAAAG+TGG + Chr1:53652367-53652386 None:intergenic 40.0%
TCGTTAAAAACGGTGAAGGA+AGG + Chr1:53652155-53652174 None:intergenic 40.0%
TGACATTGAGGAGGAATACA+GGG - Chr1:53652092-53652111 MsG0180002947.01.T01:CDS 40.0%
TGCCAACTATTAGTGTGTTG+GGG - Chr1:53652687-53652706 MsG0180002947.01.T01:CDS 40.0%
! CCAGAAGCCTCTTTTATAGT+TGG - Chr1:53652209-53652228 MsG0180002947.01.T01:intron 40.0%
! CTGATGGCGAATTTAAACAC+TGG - Chr1:53652258-53652277 MsG0180002947.01.T01:intron 40.0%
!! AGGGAGAAATGAAAGTACCT+CGG + Chr1:53651917-53651936 None:intergenic 40.0%
!! TGTTTCTCTTGATTTGGGGA+CGG - Chr1:53652610-53652629 MsG0180002947.01.T01:CDS 40.0%
AATCGACATAATCGCCACCA+AGG + Chr1:53652523-53652542 None:intergenic 45.0%
AGTGGAAATCTTCACCGCAA+TGG + Chr1:53652349-53652368 None:intergenic 45.0%
ATTTGAGTGGCACTCTGAAC+TGG - Chr1:53652549-53652568 MsG0180002947.01.T01:CDS 45.0%
CCACCAAGGTCCAAAGTTAA+AGG + Chr1:53652509-53652528 None:intergenic 45.0%
GACCCCAACACACTAATAGT+TGG + Chr1:53652692-53652711 None:intergenic 45.0%
! CCTTTAACTTTGGACCTTGG+TGG - Chr1:53652506-53652525 MsG0180002947.01.T01:CDS 45.0%
! GCTCCTTTAACTTTGGACCT+TGG - Chr1:53652503-53652522 MsG0180002947.01.T01:CDS 45.0%
! TTTTCCAGATGAAGTCCTGG+TGG + Chr1:53652312-53652331 None:intergenic 45.0%
!! TTAAACACTGGCTCCGTGTT+TGG - Chr1:53652270-53652289 MsG0180002947.01.T01:intron 45.0%
GGACCTTTATCAAAGCCACG+AGG + Chr1:53652659-53652678 None:intergenic 50.0%
! GGCTCCGTGTTTGGAATGTT+TGG - Chr1:53652279-53652298 MsG0180002947.01.T01:intron 50.0%
!! GTGCCTCGTGGCTTTGATAA+AGG - Chr1:53652653-53652672 MsG0180002947.01.T01:CDS 50.0%
CAGATGAAGTCCTGGTGGCT+GGG + Chr1:53652307-53652326 None:intergenic 55.0%
GAGTGGCACTCTGAACTGGT+TGG - Chr1:53652553-53652572 MsG0180002947.01.T01:CDS 55.0%
TACCTCGGCGATGAGATCGT+CGG + Chr1:53651902-53651921 None:intergenic 55.0%
! ATGTTTGGAACCCAGCCACC+AGG - Chr1:53652294-53652313 MsG0180002947.01.T01:CDS 55.0%
AGATCGTCGGAGAGGTTCGC+CGG + Chr1:53651889-53651908 None:intergenic 60.0%
CCAGATGAAGTCCTGGTGGC+TGG + Chr1:53652308-53652327 None:intergenic 60.0%
CCAGCCACCAGGACTTCATC+TGG - Chr1:53652305-53652324 MsG0180002947.01.T01:CDS 60.0%
CGGCGATGAGATCGTCGGAG+AGG + Chr1:53651897-53651916 None:intergenic 65.0%
CTCCGACGATCTCATCGCCG+AGG - Chr1:53651897-53651916 MsG0180002947.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 53651874 53653124 53651874 ID=MsG0180002947.01;Name=MsG0180002947.01
Chr1 mRNA 53651874 53653124 53651874 ID=MsG0180002947.01.T01;Parent=MsG0180002947.01;Name=MsG0180002947.01.T01;_AED=0.45;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|325
Chr1 exon 53653035 53653124 53653035 ID=MsG0180002947.01.T01:exon:8803;Parent=MsG0180002947.01.T01
Chr1 exon 53652290 53652885 53652290 ID=MsG0180002947.01.T01:exon:8804;Parent=MsG0180002947.01.T01
Chr1 exon 53651874 53652165 53651874 ID=MsG0180002947.01.T01:exon:8805;Parent=MsG0180002947.01.T01
Chr1 CDS 53653035 53653124 53653035 ID=MsG0180002947.01.T01:cds;Parent=MsG0180002947.01.T01
Chr1 CDS 53652290 53652885 53652290 ID=MsG0180002947.01.T01:cds;Parent=MsG0180002947.01.T01
Chr1 CDS 53651874 53652165 53651874 ID=MsG0180002947.01.T01:cds;Parent=MsG0180002947.01.T01
Gene Sequence

>MsG0180002947.01.T01

ATGACTCGGTTGCCGGCGAACCTCTCCGACGATCTCATCGCCGAGGTACTTTCATTTCTCCCTGTTAGATCTCTTCTTCAATTCAGATGTGGTGTCGTTAGATACCCCATCGATCGTATATTCGAAAACCCTTCCTTCACCGTTTTTAACGATTCTCACTCTCATCATCTGAACTTCAAAGATTTTCCAGAAGCCTCTTTTATAGTTGGTTCCTGCAATGGTTTGATTCTTTTTGCTGATGGCGAATTTAAACACTGGCTCCGTGTTTGGAATGTTTGGAACCCAGCCACCAGGACTTCATCTGGAAAATTTGAATATTTTCACCATTGCGGTGAAGATTTCCACTTTGCCTTTGGATGTGATAATTCAACCGGAATTTATAAAGTGGTGGTGTTGTGTAAGCAATTGAAAACAACAGAGGTGAAAATTCTCAATTTGGGTGGTGATCATGTTTCGAGAAATATTGAAAGTTTTCCTTTTGCTCCTTTAACTTTGGACCTTGGTGGCGATTATGTCGATTATGTGTATTTGAGTGGCACTCTGAACTGGTTGGCTATTCACAACAACATTGTTGAACAATTTACTATTGTTTCTCTTGATTTGGGGACGGAGACATACAATAAATTCATGGTGCCTCGTGGCTTTGATAAAGGTCCGCTTTACTTGCCAACTATTAGTGTGTTGGGATTTGACATTAGCCTTGATGACAGAGCATATTTTCAATTGAAGCCATTATTTCTTTCTGAGGATGATGATACCCTTATACTTAAGAGCAATCATGAACTTGAAACAATTCTCTATAATAGGAGAGATAACAGAACTAAGCGAACATGGATTATTGCAAGTAGAAATACTGCCGATAATAGAACTAGCGTTGTTGATTATGAATATTTGGGTGATGTATATTTGGACGAGTCCGAAGATTATGTTGAAAGCTTAGTTCCAATTTTTGAAAGTAAGTTTCTCTTACATCATTAA

Protein sequence

>MsG0180002947.01.T01

MTRLPANLSDDLIAEVLSFLPVRSLLQFRCGVVRYPIDRIFENPSFTVFNDSHSHHLNFKDFPEASFIVGSCNGLILFADGEFKHWLRVWNVWNPATRTSSGKFEYFHHCGEDFHFAFGCDNSTGIYKVVVLCKQLKTTEVKILNLGGDHVSRNIESFPFAPLTLDLGGDYVDYVYLSGTLNWLAIHNNIVEQFTIVSLDLGTETYNKFMVPRGFDKGPLYLPTISVLGFDISLDDRAYFQLKPLFLSEDDDTLILKSNHELETILYNRRDNRTKRTWIIASRNTADNRTSVVDYEYLGDVYLDESEDYVESLVPIFESKFLLHH*