Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024259.01.T01 | XP_024639165.1 | 64.467 | 394 | 121 | 6 | 9 | 396 | 85 | 465 | 6.97E-172 | 499 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024259.01.T01 | Q9SFC7 | 27.431 | 288 | 174 | 8 | 94 | 354 | 116 | 395 | 8.17E-19 | 90.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024259.01.T01 | I3SIH3 | 64.467 | 394 | 121 | 6 | 9 | 396 | 85 | 465 | 3.33e-172 | 499 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024259.01.T01 | MTR_5g021880 | 62.035 | 403 | 135 | 4 | 1 | 396 | 88 | 479 | 9.25e-176 | 499 |
MsG0580024259.01.T01 | MTR_5g021860 | 64.467 | 394 | 121 | 6 | 9 | 396 | 85 | 465 | 1.38e-175 | 499 |
MsG0580024259.01.T01 | MTR_5g021880 | 61.404 | 399 | 136 | 4 | 1 | 392 | 88 | 475 | 1.69e-171 | 489 |
MsG0580024259.01.T01 | MTR_5g021860 | 63.918 | 388 | 121 | 6 | 9 | 390 | 85 | 459 | 4.27e-171 | 486 |
MsG0580024259.01.T01 | MTR_5g021880 | 61.461 | 397 | 135 | 4 | 1 | 390 | 88 | 473 | 1.18e-170 | 486 |
MsG0580024259.01.T01 | MTR_4g027370 | 63.198 | 394 | 126 | 6 | 9 | 396 | 85 | 465 | 5.73e-170 | 486 |
MsG0580024259.01.T01 | MTR_5g022900 | 59.653 | 404 | 139 | 7 | 1 | 396 | 81 | 468 | 1.27e-157 | 453 |
MsG0580024259.01.T01 | MTR_5g022040 | 58.191 | 409 | 145 | 7 | 1 | 400 | 89 | 480 | 3.07e-156 | 449 |
MsG0580024259.01.T01 | MTR_7g090810 | 57.653 | 392 | 131 | 6 | 1 | 389 | 69 | 428 | 2.83e-149 | 429 |
MsG0580024259.01.T01 | MTR_5g022045 | 55.097 | 412 | 127 | 8 | 1 | 400 | 84 | 449 | 1.62e-142 | 414 |
MsG0580024259.01.T01 | MTR_5g007940 | 56.061 | 396 | 137 | 7 | 1 | 396 | 76 | 434 | 3.56e-141 | 410 |
MsG0580024259.01.T01 | MTR_7g117100 | 54.198 | 393 | 122 | 5 | 14 | 399 | 1 | 342 | 1.11e-140 | 405 |
MsG0580024259.01.T01 | MTR_7g090810 | 63.448 | 290 | 98 | 3 | 113 | 400 | 12 | 295 | 1.22e-129 | 375 |
MsG0580024259.01.T01 | MTR_7g117100 | 62.898 | 283 | 90 | 3 | 14 | 289 | 1 | 275 | 1.06e-121 | 354 |
MsG0580024259.01.T01 | MTR_5g010610 | 51.365 | 403 | 147 | 10 | 1 | 393 | 83 | 446 | 2.70e-115 | 347 |
MsG0580024259.01.T01 | MTR_5g010560 | 50.245 | 408 | 157 | 9 | 1 | 400 | 93 | 462 | 4.95e-113 | 339 |
MsG0580024259.01.T01 | MTR_5g010550 | 48.910 | 413 | 159 | 7 | 1 | 400 | 93 | 466 | 3.18e-111 | 334 |
MsG0580024259.01.T01 | MTR_5g010550 | 48.910 | 413 | 159 | 7 | 1 | 400 | 107 | 480 | 3.99e-111 | 335 |
MsG0580024259.01.T01 | MTR_5g022090 | 53.704 | 324 | 106 | 7 | 78 | 390 | 110 | 400 | 1.62e-108 | 325 |
MsG0580024259.01.T01 | MTR_5g022750 | 47.291 | 406 | 118 | 9 | 1 | 396 | 68 | 387 | 6.30e-107 | 322 |
MsG0580024259.01.T01 | MTR_6g046320 | 53.333 | 315 | 106 | 6 | 1 | 298 | 88 | 378 | 8.10e-100 | 305 |
MsG0580024259.01.T01 | MTR_5g027370 | 44.612 | 399 | 160 | 12 | 10 | 400 | 87 | 432 | 6.05e-96 | 294 |
MsG0580024259.01.T01 | MTR_5g027330 | 44.750 | 400 | 158 | 13 | 10 | 400 | 98 | 443 | 9.32e-96 | 294 |
MsG0580024259.01.T01 | MTR_0627s0010 | 47.200 | 375 | 126 | 11 | 1 | 352 | 87 | 412 | 2.06e-92 | 284 |
MsG0580024259.01.T01 | MTR_5g010660 | 47.043 | 372 | 136 | 12 | 22 | 390 | 76 | 389 | 3.42e-87 | 272 |
MsG0580024259.01.T01 | MTR_5g021920 | 48.148 | 216 | 77 | 5 | 1 | 211 | 89 | 274 | 5.35e-51 | 173 |
MsG0580024259.01.T01 | MTR_7g407070 | 29.167 | 264 | 159 | 10 | 76 | 329 | 119 | 364 | 4.81e-23 | 100 |
MsG0580024259.01.T01 | MTR_3g436150 | 31.111 | 225 | 137 | 8 | 95 | 308 | 130 | 347 | 1.26e-21 | 96.3 |
MsG0580024259.01.T01 | MTR_4g134560 | 26.403 | 303 | 178 | 11 | 92 | 377 | 166 | 440 | 8.24e-21 | 94.4 |
MsG0580024259.01.T01 | MTR_3g006670 | 28.571 | 259 | 159 | 7 | 76 | 327 | 123 | 362 | 4.80e-20 | 91.7 |
MsG0580024259.01.T01 | MTR_3g007360 | 28.395 | 243 | 150 | 9 | 98 | 332 | 144 | 370 | 1.32e-19 | 90.1 |
MsG0580024259.01.T01 | MTR_3g007410 | 28.395 | 243 | 150 | 9 | 98 | 332 | 144 | 370 | 2.57e-19 | 89.4 |
MsG0580024259.01.T01 | MTR_3g024040 | 29.437 | 231 | 139 | 8 | 98 | 327 | 122 | 329 | 4.79e-19 | 88.2 |
MsG0580024259.01.T01 | MTR_3g014540 | 29.927 | 274 | 161 | 14 | 92 | 354 | 115 | 368 | 4.02e-18 | 85.9 |
MsG0580024259.01.T01 | MTR_4g055060 | 29.384 | 211 | 134 | 5 | 98 | 302 | 126 | 327 | 6.04e-18 | 85.1 |
MsG0580024259.01.T01 | MTR_6g014720 | 28.846 | 208 | 125 | 7 | 98 | 300 | 115 | 304 | 1.47e-17 | 84.0 |
MsG0580024259.01.T01 | MTR_5g007610 | 30.040 | 253 | 148 | 12 | 91 | 327 | 123 | 362 | 2.54e-17 | 83.6 |
MsG0580024259.01.T01 | MTR_6g013270 | 28.365 | 208 | 127 | 7 | 98 | 300 | 132 | 322 | 5.72e-17 | 82.4 |
MsG0580024259.01.T01 | MTR_1g017970 | 50.000 | 76 | 38 | 0 | 32 | 107 | 49 | 124 | 1.72e-16 | 75.9 |
MsG0580024259.01.T01 | MTR_6g065980 | 29.851 | 201 | 116 | 8 | 98 | 296 | 109 | 286 | 2.13e-16 | 80.5 |
MsG0580024259.01.T01 | MTR_3g014570 | 30.137 | 292 | 152 | 16 | 98 | 372 | 122 | 378 | 4.70e-16 | 79.7 |
MsG0580024259.01.T01 | MTR_6g048140 | 28.788 | 264 | 152 | 10 | 100 | 352 | 146 | 384 | 9.78e-16 | 78.6 |
MsG0580024259.01.T01 | MTR_2g028110 | 25.490 | 255 | 164 | 7 | 98 | 339 | 89 | 330 | 1.49e-15 | 78.2 |
MsG0580024259.01.T01 | MTR_6g053260 | 28.704 | 216 | 129 | 8 | 88 | 296 | 427 | 624 | 5.44e-15 | 77.4 |
MsG0580024259.01.T01 | MTR_6g053240 | 29.091 | 220 | 126 | 9 | 89 | 296 | 119 | 320 | 6.90e-15 | 76.3 |
MsG0580024259.01.T01 | MTR_3g024110 | 29.064 | 203 | 117 | 8 | 97 | 296 | 199 | 377 | 1.09e-14 | 75.9 |
MsG0580024259.01.T01 | MTR_3g036335 | 29.213 | 267 | 162 | 11 | 88 | 344 | 131 | 380 | 1.30e-14 | 75.1 |
MsG0580024259.01.T01 | MTR_1g055375 | 27.751 | 209 | 133 | 8 | 97 | 300 | 105 | 300 | 1.53e-14 | 74.7 |
MsG0580024259.01.T01 | MTR_3g036290 | 26.236 | 263 | 158 | 8 | 88 | 346 | 108 | 338 | 2.61e-14 | 73.9 |
MsG0580024259.01.T01 | MTR_3g009240 | 28.910 | 211 | 135 | 5 | 98 | 305 | 127 | 325 | 3.97e-14 | 73.6 |
MsG0580024259.01.T01 | MTR_1g054575 | 30.392 | 204 | 121 | 7 | 93 | 291 | 139 | 326 | 9.91e-14 | 73.2 |
MsG0580024259.01.T01 | MTR_3g006570 | 27.632 | 228 | 142 | 9 | 76 | 296 | 94 | 305 | 1.30e-13 | 72.0 |
MsG0580024259.01.T01 | MTR_5g046300 | 26.794 | 209 | 130 | 8 | 100 | 303 | 100 | 290 | 1.33e-13 | 72.0 |
MsG0580024259.01.T01 | MTR_5g046290 | 26.794 | 209 | 130 | 8 | 100 | 303 | 100 | 290 | 1.33e-13 | 72.0 |
MsG0580024259.01.T01 | MTR_3g013770 | 27.852 | 298 | 166 | 15 | 71 | 354 | 116 | 378 | 1.34e-13 | 72.0 |
MsG0580024259.01.T01 | MTR_2g046800 | 27.984 | 243 | 142 | 9 | 93 | 327 | 136 | 353 | 1.82e-13 | 71.6 |
MsG0580024259.01.T01 | MTR_3g007430 | 29.268 | 205 | 130 | 5 | 98 | 296 | 133 | 328 | 2.03e-13 | 71.6 |
MsG0580024259.01.T01 | MTR_4g061340 | 25.116 | 215 | 140 | 5 | 93 | 297 | 113 | 316 | 2.29e-13 | 71.2 |
MsG0580024259.01.T01 | MTR_2g025960 | 27.602 | 221 | 129 | 9 | 98 | 296 | 4 | 215 | 2.68e-13 | 70.5 |
MsG0580024259.01.T01 | MTR_2g021155 | 25.954 | 262 | 169 | 10 | 98 | 353 | 129 | 371 | 2.84e-13 | 72.0 |
MsG0580024259.01.T01 | MTR_1g050542 | 29.279 | 222 | 135 | 9 | 93 | 308 | 142 | 347 | 3.59e-13 | 70.9 |
MsG0580024259.01.T01 | MTR_3g007270 | 27.014 | 211 | 136 | 6 | 98 | 302 | 151 | 349 | 4.21e-13 | 70.9 |
MsG0580024259.01.T01 | MTR_3g083640 | 25.000 | 248 | 163 | 8 | 48 | 293 | 105 | 331 | 4.83e-13 | 70.5 |
MsG0580024259.01.T01 | MTR_5g011200 | 27.155 | 232 | 135 | 10 | 77 | 296 | 96 | 305 | 5.30e-13 | 70.1 |
MsG0580024259.01.T01 | MTR_5g046280 | 26.316 | 209 | 131 | 8 | 100 | 303 | 3 | 193 | 5.74e-13 | 68.9 |
MsG0580024259.01.T01 | MTR_3g007330 | 26.977 | 215 | 140 | 6 | 93 | 302 | 131 | 333 | 5.92e-13 | 70.1 |
MsG0580024259.01.T01 | MTR_3g030320 | 28.169 | 213 | 130 | 7 | 98 | 306 | 44 | 237 | 6.08e-13 | 69.3 |
MsG0580024259.01.T01 | MTR_3g010430 | 28.767 | 219 | 105 | 10 | 100 | 296 | 133 | 322 | 9.66e-13 | 69.7 |
MsG0580024259.01.T01 | MTR_5g096910 | 26.699 | 206 | 127 | 8 | 100 | 294 | 132 | 324 | 2.31e-12 | 68.6 |
MsG0580024259.01.T01 | MTR_5g009060 | 26.316 | 209 | 141 | 7 | 98 | 299 | 143 | 345 | 4.30e-12 | 67.8 |
MsG0580024259.01.T01 | MTR_2g065840 | 24.286 | 210 | 149 | 6 | 95 | 296 | 115 | 322 | 1.06e-11 | 66.2 |
MsG0580024259.01.T01 | MTR_2g046920 | 28.502 | 207 | 125 | 7 | 93 | 293 | 115 | 304 | 1.40e-11 | 65.9 |
MsG0580024259.01.T01 | MTR_7g007300 | 26.066 | 211 | 116 | 8 | 98 | 300 | 204 | 382 | 1.66e-11 | 65.9 |
MsG0580024259.01.T01 | MTR_2g065860 | 24.651 | 215 | 150 | 7 | 92 | 296 | 111 | 323 | 2.43e-11 | 65.1 |
MsG0580024259.01.T01 | MTR_3g011100 | 23.247 | 271 | 163 | 7 | 98 | 347 | 333 | 579 | 2.54e-11 | 65.9 |
MsG0580024259.01.T01 | MTR_1g037540 | 27.273 | 231 | 136 | 11 | 101 | 312 | 130 | 347 | 3.97e-11 | 64.7 |
MsG0580024259.01.T01 | MTR_1g058190 | 27.976 | 168 | 96 | 6 | 151 | 301 | 150 | 309 | 5.67e-11 | 63.9 |
MsG0580024259.01.T01 | MTR_3g083660 | 25.758 | 198 | 110 | 8 | 104 | 296 | 45 | 210 | 9.90e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024259.01.T01 | AT3G07870 | 27.431 | 288 | 174 | 8 | 94 | 354 | 116 | 395 | 8.33e-20 | 90.9 |
MsG0580024259.01.T01 | AT3G06240 | 25.854 | 205 | 128 | 7 | 98 | 293 | 166 | 355 | 1.57e-13 | 72.4 |
MsG0580024259.01.T01 | AT1G53360 | 28.788 | 198 | 119 | 9 | 99 | 292 | 85 | 264 | 1.57e-12 | 68.6 |
MsG0580024259.01.T01 | AT1G53360 | 28.283 | 198 | 120 | 9 | 99 | 292 | 126 | 305 | 2.32e-12 | 68.6 |
Find 83 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACCAGTGCACGTATATTT+AGG | 0.172348 | 5:+2672074 | None:intergenic |
TGGATCCTCAAATTTCTATT+TGG | 0.185367 | 5:-2672394 | MsG0580024259.01.T01:CDS |
TCCAAGTCTAATCTCTTTAA+AGG | 0.191994 | 5:-2671889 | MsG0580024259.01.T01:CDS |
ATGTTAGACATGACACTAAA+TGG | 0.234398 | 5:-2672481 | MsG0580024259.01.T01:CDS |
CACCAATTAGTTTCATGATT+TGG | 0.235898 | 5:-2673003 | None:intergenic |
GTCAAGAACCTTGCAACTTC+TGG | 0.237429 | 5:-2672960 | MsG0580024259.01.T01:CDS |
TACTATGAACCTCAAAATTA+TGG | 0.254136 | 5:-2671981 | MsG0580024259.01.T01:CDS |
AAAACAACGAGAACACTAAT+AGG | 0.284832 | 5:-2672775 | MsG0580024259.01.T01:CDS |
TCCTAAAACTAATGAATATA+AGG | 0.290130 | 5:-2672525 | MsG0580024259.01.T01:CDS |
TAGCCCTGCGAAATTAGTTT+TGG | 0.294737 | 5:-2672801 | MsG0580024259.01.T01:CDS |
AAGTTAACATGGGAGAATTA+AGG | 0.296526 | 5:-2672226 | MsG0580024259.01.T01:CDS |
CTTCCAATCTCAAACTTATC+AGG | 0.305752 | 5:+2672929 | None:intergenic |
GTTCTAGGACAAGCTGGTTT+TGG | 0.314141 | 5:-2672554 | MsG0580024259.01.T01:CDS |
CGATACTTCGGGGAGTCCTT+TGG | 0.325051 | 5:-2672102 | MsG0580024259.01.T01:CDS |
ACAAATCGGCTAAGAGTTCT+AGG | 0.326125 | 5:-2672569 | MsG0580024259.01.T01:CDS |
TATATTCAAGCCTCCTCTTC+AGG | 0.345019 | 5:-2672882 | MsG0580024259.01.T01:CDS |
GATACTTCGGGGAGTCCTTT+GGG | 0.372422 | 5:-2672101 | MsG0580024259.01.T01:CDS |
AACCAGTGCACGTATATTTA+GGG | 0.382041 | 5:+2672075 | None:intergenic |
GTTTACAACATCGATACTTC+GGG | 0.383056 | 5:-2672113 | MsG0580024259.01.T01:CDS |
AAACAACGAGAACACTAATA+GGG | 0.383142 | 5:-2672774 | MsG0580024259.01.T01:CDS |
CTTATGAATTCTCCGGTGAC+TGG | 0.395828 | 5:+2672629 | None:intergenic |
GTGGAGGAGAAGGGAATGAT+TGG | 0.397516 | 5:+2672270 | None:intergenic |
AGTTAACATGGGAGAATTAA+GGG | 0.400027 | 5:-2672225 | MsG0580024259.01.T01:CDS |
ACCTCAAAATTATGGATTCA+AGG | 0.403738 | 5:-2671973 | MsG0580024259.01.T01:CDS |
ATGTGGGTTATGAAGGAGTA+TGG | 0.408618 | 5:-2672158 | MsG0580024259.01.T01:CDS |
GTTATGAAGGAGTATGGTAT+TGG | 0.429392 | 5:-2672152 | MsG0580024259.01.T01:CDS |
TGACACTTCTCCATGGTCAA+TGG | 0.433417 | 5:+2672979 | None:intergenic |
GTGTGGATGGTGCACTTCAT+TGG | 0.439777 | 5:-2672352 | MsG0580024259.01.T01:CDS |
TGAAGAGGAGGCTTGAATAT+AGG | 0.447242 | 5:+2672884 | None:intergenic |
GTAGAAGTTGAAGTAGCTTC+AGG | 0.449098 | 5:+2672602 | None:intergenic |
ACTAATTTCGCAGGGCTAAG+AGG | 0.450022 | 5:+2672806 | None:intergenic |
TCAGGATGCCAAATCATTCA+TGG | 0.456191 | 5:-2672864 | MsG0580024259.01.T01:CDS |
TTTCTTTGATGTTACAATGT+GGG | 0.465072 | 5:-2672174 | MsG0580024259.01.T01:CDS |
GAGCCTGATAAGTTTGAGAT+TGG | 0.465571 | 5:-2672932 | MsG0580024259.01.T01:CDS |
TTCTCCAAAACTAATTTCGC+AGG | 0.467299 | 5:+2672797 | None:intergenic |
ATAGTAGAGGATACAATTGC+AGG | 0.472043 | 5:+2671998 | None:intergenic |
CTACCATGTTATATACAAAT+CGG | 0.474436 | 5:-2672583 | MsG0580024259.01.T01:CDS |
AGGAAGTCTTATGAATTCTC+CGG | 0.487083 | 5:+2672622 | None:intergenic |
AGTTTCCAAATAGAAATTTG+AGG | 0.491703 | 5:+2672389 | None:intergenic |
GGTTTACAACATCGATACTT+CGG | 0.495379 | 5:-2672114 | MsG0580024259.01.T01:CDS |
TCCTTTAAAGAGATTAGACT+TGG | 0.500542 | 5:+2671888 | None:intergenic |
TATTGGAGAATCATGGACTA+AGG | 0.506370 | 5:-2672135 | MsG0580024259.01.T01:CDS |
TGAAACACATGTGGAGGAGA+AGG | 0.506756 | 5:+2672260 | None:intergenic |
TGTTACAATGTGGGTTATGA+AGG | 0.506940 | 5:-2672165 | MsG0580024259.01.T01:CDS |
TTCCAAGCGTGTGTATCTCA+AGG | 0.511658 | 5:+2672441 | None:intergenic |
TGTTAGACATGACACTAAAT+GGG | 0.512824 | 5:-2672480 | MsG0580024259.01.T01:CDS |
CATTGTAACATCAAAGAAAG+AGG | 0.523003 | 5:+2672178 | None:intergenic |
TTATGAATTCTCCGGTGACT+GGG | 0.525145 | 5:+2672630 | None:intergenic |
CTTTCTTTGATGTTACAATG+TGG | 0.529470 | 5:-2672175 | MsG0580024259.01.T01:CDS |
GAAACACATGTGGAGGAGAA+GGG | 0.542225 | 5:+2672261 | None:intergenic |
AGCCCTAAATATACGTGCAC+TGG | 0.542742 | 5:-2672077 | MsG0580024259.01.T01:CDS |
ACCCTTGAGATACACACGCT+TGG | 0.543000 | 5:-2672443 | MsG0580024259.01.T01:CDS |
GAGATTAGACTTGGAACATG+TGG | 0.544109 | 5:+2671897 | None:intergenic |
ACACGCTTGGAACACCATCA+TGG | 0.546345 | 5:-2672430 | MsG0580024259.01.T01:CDS |
CTAAGAGTTCTAGGACAAGC+TGG | 0.548180 | 5:-2672560 | MsG0580024259.01.T01:CDS |
AAATATCTCACTTGTGTGGA+TGG | 0.548568 | 5:-2672365 | MsG0580024259.01.T01:CDS |
AGATATATCTTAACCTTGAG+TGG | 0.554011 | 5:+2671829 | None:intergenic |
GTGGTTTGCAACCCAGTCAC+CGG | 0.566437 | 5:-2672641 | MsG0580024259.01.T01:CDS |
AAATGACAGTAAAGTTAACA+TGG | 0.566512 | 5:-2672237 | MsG0580024259.01.T01:CDS |
AAATCATTCATGGTGAAAAG+AGG | 0.575483 | 5:-2672854 | MsG0580024259.01.T01:CDS |
AGTATGGTATTGGAGAATCA+TGG | 0.577088 | 5:-2672142 | MsG0580024259.01.T01:CDS |
GTTAACATGGGAGAATTAAG+GGG | 0.582808 | 5:-2672224 | MsG0580024259.01.T01:CDS |
TCTCCAAAACTAATTTCGCA+GGG | 0.589255 | 5:+2672798 | None:intergenic |
ATGATTTGGACCATTGACCA+TGG | 0.591060 | 5:-2672989 | MsG0580024259.01.T01:CDS |
AGGTTCTTGACACTTCTCCA+TGG | 0.593591 | 5:+2672972 | None:intergenic |
AATGATTTGGCATCCTGAAG+AGG | 0.610551 | 5:+2672869 | None:intergenic |
ACTTAAATATCTCACTTGTG+TGG | 0.611680 | 5:-2672369 | MsG0580024259.01.T01:CDS |
AATATAAGGTGATACAAATG+TGG | 0.616867 | 5:-2672511 | MsG0580024259.01.T01:CDS |
CTCACACTCCAGAAGTTGCA+AGG | 0.618768 | 5:+2672952 | None:intergenic |
GATTTGGCATCCTGAAGAGG+AGG | 0.624252 | 5:+2672872 | None:intergenic |
AGGTGCGGAATATCCACTCA+AGG | 0.624837 | 5:-2671842 | MsG0580024259.01.T01:intron |
GATGCTGTAAATTCATGCAA+TGG | 0.627124 | 5:-2672704 | MsG0580024259.01.T01:CDS |
TAGCCGATTTGTATATAACA+TGG | 0.628703 | 5:+2672580 | None:intergenic |
TCCAAGCGTGTGTATCTCAA+GGG | 0.635392 | 5:+2672442 | None:intergenic |
AACAACGAGAACACTAATAG+GGG | 0.636219 | 5:-2672773 | MsG0580024259.01.T01:CDS |
TCATTCATGGTGAAAAGAGG+TGG | 0.639902 | 5:-2672851 | MsG0580024259.01.T01:CDS |
AATGACAGTAAAGTTAACAT+GGG | 0.644344 | 5:-2672236 | MsG0580024259.01.T01:CDS |
GTATATTTAGGGCTGCCCAA+AGG | 0.653275 | 5:+2672086 | None:intergenic |
ATGGGTCACACAAACAAACA+AGG | 0.659429 | 5:+2672681 | None:intergenic |
GTAGAGGAGTTCCATGAATG+CGG | 0.668926 | 5:+2671946 | None:intergenic |
AAGAAGACAACATTGAGGTG+CGG | 0.690091 | 5:-2671857 | MsG0580024259.01.T01:CDS |
CGTGAAAGAAGACAACATTG+AGG | 0.710819 | 5:-2671862 | MsG0580024259.01.T01:CDS |
TTTACAACATCGATACTTCG+GGG | 0.747519 | 5:-2672112 | MsG0580024259.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTACAATAGTATT+AGG | + | Chr5:2672726-2672745 | None:intergenic | 10.0% |
!! | AAAAAATTACAATAGTATTA+GGG | + | Chr5:2672725-2672744 | None:intergenic | 10.0% |
!!! | ATACTATTGTAATTTTTTTT+AGG | - | Chr5:2672727-2672746 | MsG0580024259.01.T01:CDS | 10.0% |
!!! | TATTGATTTTATTTTTATAC+AGG | - | Chr5:2672956-2672975 | MsG0580024259.01.T01:CDS | 10.0% |
!!! | TCTACTATTTTATTTTTATT+GGG | - | Chr5:2671484-2671503 | MsG0580024259.01.T01:intron | 10.0% |
!!! | TTCTACTATTTTATTTTTAT+TGG | - | Chr5:2671483-2671502 | MsG0580024259.01.T01:intron | 10.0% |
!!! | TTTTACAACTAATATATTTA+TGG | - | Chr5:2672133-2672152 | MsG0580024259.01.T01:CDS | 10.0% |
!!! | ACTAATTACTATGATTTTTA+AGG | + | Chr5:2671528-2671547 | None:intergenic | 15.0% |
!!! | CTAATTACTATGATTTTTAA+GGG | + | Chr5:2671527-2671546 | None:intergenic | 15.0% |
!! | TCCTAAAACTAATGAATATA+AGG | - | Chr5:2670765-2670784 | MsG0580024259.01.T01:intron | 20.0% |
!! | TTGAAATATTAATAGAGTCA+AGG | + | Chr5:2671897-2671878 | None:intergenic | 20.0% |
!!! | ACCTTATATTCATTAGTTTT+AGG | + | Chr5:2670769-2670788 | None:intergenic | 20.0% |
!!! | ATTTTAATTTTAGTAAGCAG+TGG | + | Chr5:2671369-2671388 | None:intergenic | 20.0% |
!!! | TTTTTATTGGGTAATTGAAT+AGG | - | Chr5:2671496-2671515 | MsG0580024259.01.T01:intron | 20.0% |
! | AAACAAGTAAACCATCAAAT+TGG | + | Chr5:2671935-2671954 | None:intergenic | 25.0% |
! | AAATGACAGTAAAGTTAACA+TGG | - | Chr5:2671053-2671072 | MsG0580024259.01.T01:intron | 25.0% |
! | AATATAAGGTGATACAAATG+TGG | - | Chr5:2670779-2670798 | MsG0580024259.01.T01:intron | 25.0% |
! | AATGACAGTAAAGTTAACAT+GGG | - | Chr5:2671054-2671073 | MsG0580024259.01.T01:intron | 25.0% |
! | AGTTTCCAAATAGAAATTTG+AGG | + | Chr5:2670904-2670923 | None:intergenic | 25.0% |
! | ATCGAGATATCATACAAAAT+CGG | + | Chr5:2672077-2672096 | None:intergenic | 25.0% |
! | CAAGTATGTTAAGTGATTTA+CGG | - | Chr5:2671664-2671683 | MsG0580024259.01.T01:intron | 25.0% |
! | CTACCATGTTATATACAAAT+CGG | - | Chr5:2670707-2670726 | MsG0580024259.01.T01:intron | 25.0% |
! | GGAATAACAGTTTAGTATTA+TGG | + | Chr5:2672704-2672723 | None:intergenic | 25.0% |
! | GTAAATAAATAATCGAACTC+AGG | + | Chr5:2672552-2672571 | None:intergenic | 25.0% |
! | TAAATCACTTAACATACTTG+TGG | + | Chr5:2671664-2671683 | None:intergenic | 25.0% |
! | TACTATGAACCTCAAAATTA+TGG | - | Chr5:2671309-2671328 | MsG0580024259.01.T01:intron | 25.0% |
! | TTGTCAAAAGTTTCTCTATT+AGG | - | Chr5:2671784-2671803 | MsG0580024259.01.T01:intron | 25.0% |
! | TTTCTTTGATGTTACAATGT+GGG | - | Chr5:2671116-2671135 | MsG0580024259.01.T01:intron | 25.0% |
!! | TATAGTACCTTTCATTTTGA+TGG | - | Chr5:2672433-2672452 | MsG0580024259.01.T01:CDS | 25.0% |
!!! | CAAAATGAAAGGTACTATAA+AGG | + | Chr5:2672432-2672451 | None:intergenic | 25.0% |
AAAACAACGAGAACACTAAT+AGG | - | Chr5:2670515-2670534 | MsG0580024259.01.T01:intron | 30.0% | |
AAACAACGAGAACACTAATA+GGG | - | Chr5:2670516-2670535 | MsG0580024259.01.T01:intron | 30.0% | |
AAATCATTCATGGTGAAAAG+AGG | - | Chr5:2670436-2670455 | MsG0580024259.01.T01:intron | 30.0% | |
AAGGAAAATAATCACACCTT+TGG | - | Chr5:2672340-2672359 | MsG0580024259.01.T01:CDS | 30.0% | |
AAGTTAACATGGGAGAATTA+AGG | - | Chr5:2671064-2671083 | MsG0580024259.01.T01:intron | 30.0% | |
ACCTCAAAATTATGGATTCA+AGG | - | Chr5:2671317-2671336 | MsG0580024259.01.T01:intron | 30.0% | |
ACTTAAATATCTCACTTGTG+TGG | - | Chr5:2670921-2670940 | MsG0580024259.01.T01:intron | 30.0% | |
AGAAAATGAAGTTCTTTCCT+TGG | - | Chr5:2672773-2672792 | MsG0580024259.01.T01:CDS | 30.0% | |
AGATATATCTTAACCTTGAG+TGG | + | Chr5:2671464-2671483 | None:intergenic | 30.0% | |
AGTTAACATGGGAGAATTAA+GGG | - | Chr5:2671065-2671084 | MsG0580024259.01.T01:intron | 30.0% | |
ATCACATTCAATTACACCTT+TGG | - | Chr5:2672198-2672217 | MsG0580024259.01.T01:CDS | 30.0% | |
ATCATGGAAAAATGTTGAAG+TGG | - | Chr5:2670876-2670895 | MsG0580024259.01.T01:intron | 30.0% | |
ATCTAACAAAAACACTCTAG+TGG | - | Chr5:2670630-2670649 | MsG0580024259.01.T01:intron | 30.0% | |
ATGTTAGACATGACACTAAA+TGG | - | Chr5:2670809-2670828 | MsG0580024259.01.T01:intron | 30.0% | |
CAAAACTAGCTCATCAAAAT+TGG | + | Chr5:2672311-2672330 | None:intergenic | 30.0% | |
CAAAGACAAAACCAATTTGA+TGG | - | Chr5:2671921-2671940 | MsG0580024259.01.T01:CDS | 30.0% | |
CATTGTAACATCAAAGAAAG+AGG | + | Chr5:2671115-2671134 | None:intergenic | 30.0% | |
CTTTCTTTGATGTTACAATG+TGG | - | Chr5:2671115-2671134 | MsG0580024259.01.T01:intron | 30.0% | |
GAATGTGATAGATAACAAAG+AGG | + | Chr5:2672187-2672206 | None:intergenic | 30.0% | |
GAGGGTTAACAAAAAACAAT+GGG | - | Chr5:2672621-2672640 | MsG0580024259.01.T01:CDS | 30.0% | |
GGAACAAAGTATAAGAAATG+TGG | + | Chr5:2672932-2672951 | None:intergenic | 30.0% | |
TCCAAGTCTAATCTCTTTAA+AGG | - | Chr5:2671401-2671420 | MsG0580024259.01.T01:intron | 30.0% | |
TCGAGATATCATACAAAATC+GGG | + | Chr5:2672076-2672095 | None:intergenic | 30.0% | |
TGATTGATGAAACATCACAA+AGG | + | Chr5:2672108-2672127 | None:intergenic | 30.0% | |
TGCGATTATGTTGTGAATTA+AGG | - | Chr5:2671595-2671614 | MsG0580024259.01.T01:intron | 30.0% | |
TGGATCCTCAAATTTCTATT+TGG | - | Chr5:2670896-2670915 | MsG0580024259.01.T01:intron | 30.0% | |
TGTTAGACATGACACTAAAT+GGG | - | Chr5:2670810-2670829 | MsG0580024259.01.T01:intron | 30.0% | |
TTGTCAAAAGTTTCCCAATT+AGG | + | Chr5:2671844-2671863 | None:intergenic | 30.0% | |
! | AAGTGATTTACGGTTTTCTT+TGG | - | Chr5:2671674-2671693 | MsG0580024259.01.T01:intron | 30.0% |
! | ACCTTGAATCCATAATTTTG+AGG | + | Chr5:2671321-2671340 | None:intergenic | 30.0% |
! | ACTTCAACATTTTTCCATGA+TGG | + | Chr5:2670877-2670896 | None:intergenic | 30.0% |
! | GTTGTTCTAATGTCAGTTTT+TGG | - | Chr5:2672646-2672665 | MsG0580024259.01.T01:CDS | 30.0% |
! | TCCTTTAAAGAGATTAGACT+TGG | + | Chr5:2671405-2671424 | None:intergenic | 30.0% |
! | TCTTTTCACCATGAATGATT+TGG | + | Chr5:2670437-2670456 | None:intergenic | 30.0% |
! | TTTGGAGTAAACCACTAAAT+TGG | - | Chr5:2671692-2671711 | MsG0580024259.01.T01:intron | 30.0% |
!! | ACTAGAGTGTTTTTGTTAGA+TGG | + | Chr5:2670631-2670650 | None:intergenic | 30.0% |
!! | CAATTTTGATGAGCTAGTTT+TGG | - | Chr5:2672309-2672328 | MsG0580024259.01.T01:CDS | 30.0% |
!! | CTAGAGTGTTTTTGTTAGAT+GGG | + | Chr5:2670630-2670649 | None:intergenic | 30.0% |
!! | TAGCCGATTTGTATATAACA+TGG | + | Chr5:2670713-2670732 | None:intergenic | 30.0% |
!!! | AATTTTGAGGTTCATAGTAG+AGG | + | Chr5:2671308-2671327 | None:intergenic | 30.0% |
!!! | AATTTTTTTTAGGCGTGCAA+TGG | - | Chr5:2672737-2672756 | MsG0580024259.01.T01:CDS | 30.0% |
AAACCAGTGCACGTATATTT+AGG | + | Chr5:2671219-2671238 | None:intergenic | 35.0% | |
AAAGACATGGACCAATTTAG+TGG | + | Chr5:2671706-2671725 | None:intergenic | 35.0% | |
AAATATCTCACTTGTGTGGA+TGG | - | Chr5:2670925-2670944 | MsG0580024259.01.T01:intron | 35.0% | |
AACAACGAGAACACTAATAG+GGG | - | Chr5:2670517-2670536 | MsG0580024259.01.T01:intron | 35.0% | |
AACCAGTGCACGTATATTTA+GGG | + | Chr5:2671218-2671237 | None:intergenic | 35.0% | |
ACATACGTATTCTTCTCAAG+AGG | + | Chr5:2672864-2672883 | None:intergenic | 35.0% | |
AGCTCATCAAAATTGGTATC+TGG | + | Chr5:2672304-2672323 | None:intergenic | 35.0% | |
ATAAGAAATGTGGCTCAAAC+TGG | + | Chr5:2672922-2672941 | None:intergenic | 35.0% | |
ATAGTAGAGGATACAATTGC+AGG | + | Chr5:2671295-2671314 | None:intergenic | 35.0% | |
ATATCATACAAAATCGGGAG+AGG | + | Chr5:2672071-2672090 | None:intergenic | 35.0% | |
CTTCCAATCTCAAACTTATC+AGG | + | Chr5:2670364-2670383 | None:intergenic | 35.0% | |
GAATTCTTCACAATCAGATG+AGG | + | Chr5:2672828-2672847 | None:intergenic | 35.0% | |
GATGCTGTAAATTCATGCAA+TGG | - | Chr5:2670586-2670605 | MsG0580024259.01.T01:intron | 35.0% | |
GGAGGGTTAACAAAAAACAA+TGG | - | Chr5:2672620-2672639 | MsG0580024259.01.T01:CDS | 35.0% | |
GGTTTACAACATCGATACTT+CGG | - | Chr5:2671176-2671195 | MsG0580024259.01.T01:intron | 35.0% | |
GTTAACATGGGAGAATTAAG+GGG | - | Chr5:2671066-2671085 | MsG0580024259.01.T01:intron | 35.0% | |
GTTTACAACATCGATACTTC+GGG | - | Chr5:2671177-2671196 | MsG0580024259.01.T01:intron | 35.0% | |
TCTCCAAAACTAATTTCGCA+GGG | + | Chr5:2670495-2670514 | None:intergenic | 35.0% | |
TTCTCCAAAACTAATTTCGC+AGG | + | Chr5:2670496-2670515 | None:intergenic | 35.0% | |
TTTACAACATCGATACTTCG+GGG | - | Chr5:2671178-2671197 | MsG0580024259.01.T01:intron | 35.0% | |
! | AGGAAGTCTTATGAATTCTC+CGG | + | Chr5:2670671-2670690 | None:intergenic | 35.0% |
! | AGTATGGTATTGGAGAATCA+TGG | - | Chr5:2671148-2671167 | MsG0580024259.01.T01:intron | 35.0% |
! | GGAAACTTTTGACAAAGACA+GGG | - | Chr5:2671849-2671868 | MsG0580024259.01.T01:CDS | 35.0% |
! | GTTATGAAGGAGTATGGTAT+TGG | - | Chr5:2671138-2671157 | MsG0580024259.01.T01:intron | 35.0% |
! | TATTGGAGAATCATGGACTA+AGG | - | Chr5:2671155-2671174 | MsG0580024259.01.T01:intron | 35.0% |
! | TGTTACAATGTGGGTTATGA+AGG | - | Chr5:2671125-2671144 | MsG0580024259.01.T01:intron | 35.0% |
!! | ACGTATGTTTTTGCTGTGAT+TGG | - | Chr5:2672876-2672895 | MsG0580024259.01.T01:CDS | 35.0% |
!! | AGTACCTTTCATTTTGATGG+AGG | - | Chr5:2672436-2672455 | MsG0580024259.01.T01:CDS | 35.0% |
!! | ATTTTAGTAAGCAGTGGTAG+AGG | + | Chr5:2671363-2671382 | None:intergenic | 35.0% |
!! | GTACCTTTCATTTTGATGGA+GGG | - | Chr5:2672437-2672456 | MsG0580024259.01.T01:CDS | 35.0% |
!! | TGTGTTTTGTCATTTGACGA+GGG | - | Chr5:2671817-2671836 | MsG0580024259.01.T01:intron | 35.0% |
!! | TTGTGTTTTGTCATTTGACG+AGG | - | Chr5:2671816-2671835 | MsG0580024259.01.T01:intron | 35.0% |
!!! | CTGTCATTTTGAAACACATG+TGG | + | Chr5:2671042-2671061 | None:intergenic | 35.0% |
!!! | TCATTTTGAAACACATGTGG+AGG | + | Chr5:2671039-2671058 | None:intergenic | 35.0% |
AAGAAGACAACATTGAGGTG+CGG | - | Chr5:2671433-2671452 | MsG0580024259.01.T01:intron | 40.0% | |
ACAAATCGGCTAAGAGTTCT+AGG | - | Chr5:2670721-2670740 | MsG0580024259.01.T01:intron | 40.0% | |
AGGCGTGCAATGGTTAAATT+GGG | - | Chr5:2672747-2672766 | MsG0580024259.01.T01:CDS | 40.0% | |
ATGGGTCACACAAACAAACA+AGG | + | Chr5:2670612-2670631 | None:intergenic | 40.0% | |
ATTTGACGAGGGACCTAATT+GGG | - | Chr5:2671828-2671847 | MsG0580024259.01.T01:intron | 40.0% | |
CCTCCTGTTATCAAGGAAAA+GGG | + | Chr5:2672605-2672624 | None:intergenic | 40.0% | |
CGTGAAAGAAGACAACATTG+AGG | - | Chr5:2671428-2671447 | MsG0580024259.01.T01:intron | 40.0% | |
CTACCAAAGACAAATTGCTC+AGG | - | Chr5:2672522-2672541 | MsG0580024259.01.T01:CDS | 40.0% | |
CTCCTGTTATCAAGGAAAAG+GGG | + | Chr5:2672604-2672623 | None:intergenic | 40.0% | |
GAGATTAGACTTGGAACATG+TGG | + | Chr5:2671396-2671415 | None:intergenic | 40.0% | |
GTAGAAGTTGAAGTAGCTTC+AGG | + | Chr5:2670691-2670710 | None:intergenic | 40.0% | |
TAGGCGTGCAATGGTTAAAT+TGG | - | Chr5:2672746-2672765 | MsG0580024259.01.T01:CDS | 40.0% | |
TATATTCAAGCCTCCTCTTC+AGG | - | Chr5:2670408-2670427 | MsG0580024259.01.T01:intron | 40.0% | |
TCAGGATGCCAAATCATTCA+TGG | - | Chr5:2670426-2670445 | MsG0580024259.01.T01:intron | 40.0% | |
TCATTCATGGTGAAAAGAGG+TGG | - | Chr5:2670439-2670458 | MsG0580024259.01.T01:intron | 40.0% | |
TCCTGTTATCAAGGAAAAGG+GGG | + | Chr5:2672603-2672622 | None:intergenic | 40.0% | |
TCTCCTGAGCAATTTGTCTT+TGG | + | Chr5:2672528-2672547 | None:intergenic | 40.0% | |
TGAAGAGGAGGCTTGAATAT+AGG | + | Chr5:2670409-2670428 | None:intergenic | 40.0% | |
TGTTAACCCTCCTGTTATCA+AGG | + | Chr5:2672612-2672631 | None:intergenic | 40.0% | |
TTATGAATTCTCCGGTGACT+GGG | + | Chr5:2670663-2670682 | None:intergenic | 40.0% | |
! | AATGATTTGGCATCCTGAAG+AGG | + | Chr5:2670424-2670443 | None:intergenic | 40.0% |
! | ATGATTTGGACCATTGACCA+TGG | - | Chr5:2670301-2670320 | MsG0580024259.01.T01:CDS | 40.0% |
! | ATGTGGGTTATGAAGGAGTA+TGG | - | Chr5:2671132-2671151 | MsG0580024259.01.T01:intron | 40.0% |
! | GAGCCTGATAAGTTTGAGAT+TGG | - | Chr5:2670358-2670377 | MsG0580024259.01.T01:intron | 40.0% |
! | GGGAAACTTTTGACAAAGAC+AGG | - | Chr5:2671848-2671867 | MsG0580024259.01.T01:CDS | 40.0% |
! | TTCAAGGTTTTCCGCATTCA+TGG | - | Chr5:2671333-2671352 | MsG0580024259.01.T01:intron | 40.0% |
! | TTGGTAATCTGGAGTTTGGT+CGG | + | Chr5:2672578-2672597 | None:intergenic | 40.0% |
! | TTTTCCGTTATCAGAGCCAA+AGG | + | Chr5:2672359-2672378 | None:intergenic | 40.0% |
!! | CCTTTTCCTTGATAACAGGA+GGG | - | Chr5:2672603-2672622 | MsG0580024259.01.T01:CDS | 40.0% |
!! | CTCTCTTCAAAGCGTTTTAC+CGG | + | Chr5:2671249-2671268 | None:intergenic | 40.0% |
!! | TAGCCCTGCGAAATTAGTTT+TGG | - | Chr5:2670489-2670508 | MsG0580024259.01.T01:intron | 40.0% |
!!! | ATACGTGCACTGGTTTTTGT+TGG | - | Chr5:2671223-2671242 | MsG0580024259.01.T01:intron | 40.0% |
!!! | GCTAGTTTTGGCTTCTTCAA+AGG | - | Chr5:2672321-2672340 | MsG0580024259.01.T01:CDS | 40.0% |
!!! | TTTTCAAGTCACTTCAGCCA+AGG | + | Chr5:2672793-2672812 | None:intergenic | 40.0% |
ACTAATTTCGCAGGGCTAAG+AGG | + | Chr5:2670487-2670506 | None:intergenic | 45.0% | |
AGCCCTAAATATACGTGCAC+TGG | - | Chr5:2671213-2671232 | MsG0580024259.01.T01:intron | 45.0% | |
AGGTTCTTGACACTTCTCCA+TGG | + | Chr5:2670321-2670340 | None:intergenic | 45.0% | |
CATTTGACGAGGGACCTAAT+TGG | - | Chr5:2671827-2671846 | MsG0580024259.01.T01:intron | 45.0% | |
CCACCCTCCATCAAAATGAA+AGG | + | Chr5:2672443-2672462 | None:intergenic | 45.0% | |
CCCTCCTGTTATCAAGGAAA+AGG | + | Chr5:2672606-2672625 | None:intergenic | 45.0% | |
CTTATGAATTCTCCGGTGAC+TGG | + | Chr5:2670664-2670683 | None:intergenic | 45.0% | |
GAAACACATGTGGAGGAGAA+GGG | + | Chr5:2671032-2671051 | None:intergenic | 45.0% | |
GAGAGTGGCTTACAAAGACA+TGG | + | Chr5:2671719-2671738 | None:intergenic | 45.0% | |
GCAGTAGTAACCAAGCAGTT+GGG | - | Chr5:2672480-2672499 | MsG0580024259.01.T01:CDS | 45.0% | |
GCGTGCAATGGTTAAATTGG+GGG | - | Chr5:2672749-2672768 | MsG0580024259.01.T01:CDS | 45.0% | |
GCTCAAACTGGAGTAAGAAG+GGG | + | Chr5:2672910-2672929 | None:intergenic | 45.0% | |
GGCGTGCAATGGTTAAATTG+GGG | - | Chr5:2672748-2672767 | MsG0580024259.01.T01:CDS | 45.0% | |
GGCTCAAACTGGAGTAAGAA+GGG | + | Chr5:2672911-2672930 | None:intergenic | 45.0% | |
GTAGAGGAGTTCCATGAATG+CGG | + | Chr5:2671347-2671366 | None:intergenic | 45.0% | |
GTCAAGAACCTTGCAACTTC+TGG | - | Chr5:2670330-2670349 | MsG0580024259.01.T01:intron | 45.0% | |
GTCAAGGACTAATCTGAGAG+TGG | + | Chr5:2671734-2671753 | None:intergenic | 45.0% | |
TATCAAGGAAAAGGGGGTCT+TGG | + | Chr5:2672597-2672616 | None:intergenic | 45.0% | |
TCCAAGCGTGTGTATCTCAA+GGG | + | Chr5:2670851-2670870 | None:intergenic | 45.0% | |
TGAAACACATGTGGAGGAGA+AGG | + | Chr5:2671033-2671052 | None:intergenic | 45.0% | |
TGACACTTCTCCATGGTCAA+TGG | + | Chr5:2670314-2670333 | None:intergenic | 45.0% | |
TGGCTCAAACTGGAGTAAGA+AGG | + | Chr5:2672912-2672931 | None:intergenic | 45.0% | |
TTCCAAGCGTGTGTATCTCA+AGG | + | Chr5:2670852-2670871 | None:intergenic | 45.0% | |
! | AAAAGGGGGTCTTGGTAATC+TGG | + | Chr5:2672589-2672608 | None:intergenic | 45.0% |
! | GGTCTTGGTAATCTGGAGTT+TGG | + | Chr5:2672582-2672601 | None:intergenic | 45.0% |
! | GTATATTTAGGGCTGCCCAA+AGG | + | Chr5:2671207-2671226 | None:intergenic | 45.0% |
! | TGGTAATCTGGAGTTTGGTC+GGG | + | Chr5:2672577-2672596 | None:intergenic | 45.0% |
!! | ACCCCCTTTTCCTTGATAAC+AGG | - | Chr5:2672599-2672618 | MsG0580024259.01.T01:CDS | 45.0% |
!! | CACACCTTTGGCTCTGATAA+CGG | - | Chr5:2672352-2672371 | MsG0580024259.01.T01:CDS | 45.0% |
!! | CCCTTTTCCTTGATAACAGG+AGG | - | Chr5:2672602-2672621 | MsG0580024259.01.T01:CDS | 45.0% |
!! | CCTTTCATTTTGATGGAGGG+TGG | - | Chr5:2672440-2672459 | MsG0580024259.01.T01:CDS | 45.0% |
!! | CTAAGAGTTCTAGGACAAGC+TGG | - | Chr5:2670730-2670749 | MsG0580024259.01.T01:intron | 45.0% |
!! | TCATTTTGATGGAGGGTGGA+GGG | - | Chr5:2672444-2672463 | MsG0580024259.01.T01:CDS | 45.0% |
!! | TCGCTGTTGACTTGAGACTT+AGG | - | Chr5:2672243-2672262 | MsG0580024259.01.T01:CDS | 45.0% |
!! | TTCATTTTGATGGAGGGTGG+AGG | - | Chr5:2672443-2672462 | MsG0580024259.01.T01:CDS | 45.0% |
!!! | GTTCTAGGACAAGCTGGTTT+TGG | - | Chr5:2670736-2670755 | MsG0580024259.01.T01:intron | 45.0% |
!! | TAAAAATAAAATCAATATTA+AGG | + | Chr5:2672953-2672972 | None:intergenic | 5.0% |
ACACGCTTGGAACACCATCA+TGG | - | Chr5:2670860-2670879 | MsG0580024259.01.T01:intron | 50.0% | |
ACCAAGCAGTTGGGTTCAAG+TGG | - | Chr5:2672489-2672508 | MsG0580024259.01.T01:CDS | 50.0% | |
ACCACTTGAACCCAACTGCT+TGG | + | Chr5:2672493-2672512 | None:intergenic | 50.0% | |
ACCCTTGAGATACACACGCT+TGG | - | Chr5:2670847-2670866 | MsG0580024259.01.T01:intron | 50.0% | |
AGGTGCGGAATATCCACTCA+AGG | - | Chr5:2671448-2671467 | MsG0580024259.01.T01:intron | 50.0% | |
AGTCTCAAGTCAACAGCGAC+AGG | + | Chr5:2672242-2672261 | None:intergenic | 50.0% | |
CTCACACTCCAGAAGTTGCA+AGG | + | Chr5:2670341-2670360 | None:intergenic | 50.0% | |
GATACTTCGGGGAGTCCTTT+GGG | - | Chr5:2671189-2671208 | MsG0580024259.01.T01:intron | 50.0% | |
GATTTGGCATCCTGAAGAGG+AGG | + | Chr5:2670421-2670440 | None:intergenic | 50.0% | |
GGCAGTAGTAACCAAGCAGT+TGG | - | Chr5:2672479-2672498 | MsG0580024259.01.T01:CDS | 50.0% | |
GTGGAGGAGAAGGGAATGAT+TGG | + | Chr5:2671023-2671042 | None:intergenic | 50.0% | |
GTGTGGATGGTGCACTTCAT+TGG | - | Chr5:2670938-2670957 | MsG0580024259.01.T01:intron | 50.0% | |
! | TAATCTGGAGTTTGGTCGGG+AGG | + | Chr5:2672574-2672593 | None:intergenic | 50.0% |
!!! | GTGCACTGGTTTTTGTTGGC+CGG | - | Chr5:2671227-2671246 | MsG0580024259.01.T01:intron | 50.0% |
AACCCAAGTGGGTGAGCCAA+AGG | + | Chr5:2672217-2672236 | None:intergenic | 55.0% | |
CGATACTTCGGGGAGTCCTT+TGG | - | Chr5:2671188-2671207 | MsG0580024259.01.T01:intron | 55.0% | |
! | ACACCTTTGGCTCACCCACT+TGG | - | Chr5:2672211-2672230 | MsG0580024259.01.T01:CDS | 55.0% |
! | CACCTTTGGCTCACCCACTT+GGG | - | Chr5:2672212-2672231 | MsG0580024259.01.T01:CDS | 55.0% |
! | GGTGGAGGGTGTGAGCAAAT+AGG | - | Chr5:2672458-2672477 | MsG0580024259.01.T01:CDS | 55.0% |
! | GTGGTTTGCAACCCAGTCAC+CGG | - | Chr5:2670649-2670668 | MsG0580024259.01.T01:intron | 55.0% |
! | TTTGGCTCACCCACTTGGGT+TGG | - | Chr5:2672216-2672235 | MsG0580024259.01.T01:CDS | 55.0% |
AGCGACAGGCCAACCCAAGT+GGG | + | Chr5:2672228-2672247 | None:intergenic | 60.0% | |
CAGCGACAGGCCAACCCAAG+TGG | + | Chr5:2672229-2672248 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 2670301 | 2673011 | 2670301 | ID=MsG0580024259.01;Name=MsG0580024259.01 |
Chr5 | mRNA | 2670301 | 2673011 | 2670301 | ID=MsG0580024259.01.T01;Parent=MsG0580024259.01;Name=MsG0580024259.01.T01;_AED=0.38;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|400 |
Chr5 | exon | 2671843 | 2673011 | 2671843 | ID=MsG0580024259.01.T01:exon:1857;Parent=MsG0580024259.01.T01 |
Chr5 | exon | 2670301 | 2670334 | 2670301 | ID=MsG0580024259.01.T01:exon:1856;Parent=MsG0580024259.01.T01 |
Chr5 | CDS | 2671843 | 2673011 | 2671843 | ID=MsG0580024259.01.T01:cds;Parent=MsG0580024259.01.T01 |
Chr5 | CDS | 2670301 | 2670334 | 2670301 | ID=MsG0580024259.01.T01:cds;Parent=MsG0580024259.01.T01 |
Gene Sequence |
Protein sequence |