Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025087.01.T01 | PNX89030.1 | 61.566 | 281 | 83 | 6 | 5 | 263 | 100 | 377 | 5.68E-102 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025087.01.T01 | Q9SFC7 | 29.644 | 253 | 144 | 9 | 34 | 261 | 116 | 359 | 3.17E-17 | 84 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025087.01.T01 | A0A2K3ME20 | 61.566 | 281 | 83 | 6 | 5 | 263 | 100 | 377 | 2.71e-102 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025087.01.T01 | MTR_4g027370 | 58.824 | 255 | 94 | 6 | 19 | 264 | 152 | 404 | 2.33e-90 | 277 |
| MsG0580025087.01.T01 | MTR_5g021860 | 59.055 | 254 | 93 | 6 | 19 | 263 | 152 | 403 | 4.15e-90 | 275 |
| MsG0580025087.01.T01 | MTR_5g021860 | 59.055 | 254 | 93 | 6 | 19 | 263 | 152 | 403 | 6.44e-90 | 276 |
| MsG0580025087.01.T01 | MTR_5g021880 | 59.583 | 240 | 87 | 4 | 34 | 263 | 178 | 417 | 6.63e-89 | 273 |
| MsG0580025087.01.T01 | MTR_5g021880 | 59.583 | 240 | 87 | 4 | 34 | 263 | 178 | 417 | 9.05e-89 | 271 |
| MsG0580025087.01.T01 | MTR_5g021880 | 59.583 | 240 | 87 | 4 | 34 | 263 | 178 | 417 | 1.70e-88 | 272 |
| MsG0580025087.01.T01 | MTR_5g022900 | 56.400 | 250 | 101 | 5 | 19 | 262 | 158 | 405 | 9.54e-83 | 256 |
| MsG0580025087.01.T01 | MTR_7g117100 | 53.175 | 252 | 86 | 4 | 19 | 263 | 63 | 289 | 6.44e-80 | 246 |
| MsG0580025087.01.T01 | MTR_5g022040 | 57.258 | 248 | 84 | 7 | 30 | 263 | 175 | 414 | 5.95e-78 | 244 |
| MsG0580025087.01.T01 | MTR_7g117100 | 58.216 | 213 | 82 | 3 | 19 | 224 | 63 | 275 | 9.58e-77 | 234 |
| MsG0580025087.01.T01 | MTR_5g022045 | 58.515 | 229 | 77 | 7 | 52 | 263 | 156 | 383 | 2.22e-74 | 234 |
| MsG0580025087.01.T01 | MTR_5g010550 | 54.959 | 242 | 84 | 6 | 34 | 253 | 170 | 408 | 5.40e-72 | 228 |
| MsG0580025087.01.T01 | MTR_5g010550 | 54.959 | 242 | 84 | 6 | 34 | 253 | 184 | 422 | 7.76e-72 | 228 |
| MsG0580025087.01.T01 | MTR_5g010610 | 55.459 | 229 | 93 | 3 | 16 | 235 | 141 | 369 | 9.15e-72 | 230 |
| MsG0580025087.01.T01 | MTR_5g010560 | 59.242 | 211 | 77 | 3 | 34 | 235 | 170 | 380 | 2.22e-71 | 227 |
| MsG0580025087.01.T01 | MTR_7g090810 | 54.043 | 235 | 84 | 7 | 44 | 263 | 4 | 229 | 3.92e-71 | 221 |
| MsG0580025087.01.T01 | MTR_0627s0010 | 50.000 | 264 | 106 | 6 | 17 | 263 | 137 | 391 | 1.09e-69 | 221 |
| MsG0580025087.01.T01 | MTR_5g022090 | 48.029 | 279 | 103 | 8 | 1 | 263 | 92 | 344 | 3.89e-68 | 216 |
| MsG0580025087.01.T01 | MTR_7g090810 | 49.237 | 262 | 107 | 7 | 17 | 263 | 123 | 373 | 4.61e-68 | 217 |
| MsG0580025087.01.T01 | MTR_6g046320 | 52.101 | 238 | 91 | 6 | 17 | 233 | 143 | 378 | 1.24e-65 | 212 |
| MsG0580025087.01.T01 | MTR_5g027370 | 46.538 | 260 | 119 | 8 | 12 | 263 | 116 | 363 | 4.22e-64 | 207 |
| MsG0580025087.01.T01 | MTR_5g027330 | 46.538 | 260 | 119 | 8 | 12 | 263 | 127 | 374 | 9.69e-64 | 206 |
| MsG0580025087.01.T01 | MTR_5g007940 | 50.617 | 243 | 84 | 6 | 24 | 259 | 156 | 369 | 3.81e-63 | 205 |
| MsG0580025087.01.T01 | MTR_5g022750 | 52.195 | 205 | 75 | 7 | 37 | 228 | 125 | 319 | 1.42e-56 | 187 |
| MsG0580025087.01.T01 | MTR_5g010660 | 46.000 | 250 | 101 | 6 | 16 | 253 | 113 | 340 | 9.36e-54 | 181 |
| MsG0580025087.01.T01 | MTR_5g021920 | 48.413 | 126 | 48 | 3 | 17 | 127 | 144 | 267 | 5.27e-27 | 106 |
| MsG0580025087.01.T01 | MTR_4g134560 | 27.982 | 218 | 140 | 5 | 31 | 241 | 165 | 372 | 2.80e-17 | 81.6 |
| MsG0580025087.01.T01 | MTR_3g436150 | 25.287 | 261 | 164 | 10 | 20 | 261 | 110 | 358 | 5.73e-17 | 80.1 |
| MsG0580025087.01.T01 | MTR_7g407070 | 26.894 | 264 | 161 | 10 | 20 | 261 | 111 | 364 | 4.19e-16 | 77.8 |
| MsG0580025087.01.T01 | MTR_6g065980 | 30.808 | 198 | 109 | 10 | 40 | 231 | 111 | 286 | 2.20e-15 | 75.5 |
| MsG0580025087.01.T01 | MTR_1g055375 | 28.505 | 214 | 131 | 8 | 30 | 234 | 99 | 299 | 4.40e-15 | 74.7 |
| MsG0580025087.01.T01 | MTR_0667s0010 | 25.926 | 243 | 151 | 7 | 40 | 259 | 95 | 331 | 5.86e-14 | 71.6 |
| MsG0580025087.01.T01 | MTR_1g054575 | 29.412 | 204 | 122 | 8 | 31 | 226 | 137 | 326 | 1.56e-13 | 70.5 |
| MsG0580025087.01.T01 | MTR_2g028130 | 26.415 | 212 | 133 | 6 | 40 | 231 | 107 | 315 | 2.94e-13 | 69.3 |
| MsG0580025087.01.T01 | MTR_3g007430 | 27.273 | 209 | 124 | 8 | 38 | 231 | 133 | 328 | 3.03e-13 | 69.3 |
| MsG0580025087.01.T01 | MTR_3g024040 | 27.941 | 204 | 124 | 9 | 35 | 232 | 119 | 305 | 3.48e-13 | 68.9 |
| MsG0580025087.01.T01 | MTR_2g024100 | 24.255 | 235 | 156 | 5 | 42 | 259 | 106 | 335 | 4.16e-13 | 68.9 |
| MsG0580025087.01.T01 | MTR_2g046800 | 28.169 | 213 | 122 | 8 | 31 | 231 | 134 | 327 | 4.79e-13 | 68.9 |
| MsG0580025087.01.T01 | MTR_4g055060 | 26.695 | 236 | 141 | 8 | 40 | 259 | 128 | 347 | 7.39e-13 | 68.2 |
| MsG0580025087.01.T01 | MTR_3g036290 | 28.099 | 242 | 134 | 9 | 31 | 259 | 105 | 319 | 8.17e-13 | 67.8 |
| MsG0580025087.01.T01 | MTR_3g014540 | 28.774 | 212 | 123 | 9 | 33 | 231 | 119 | 315 | 8.97e-13 | 67.8 |
| MsG0580025087.01.T01 | MTR_6g053240 | 25.738 | 237 | 155 | 7 | 38 | 264 | 126 | 351 | 1.49e-12 | 67.4 |
| MsG0580025087.01.T01 | MTR_3g014570 | 29.858 | 211 | 122 | 10 | 33 | 231 | 119 | 315 | 1.70e-12 | 67.0 |
| MsG0580025087.01.T01 | MTR_0044s0300 | 28.384 | 229 | 132 | 9 | 40 | 259 | 138 | 343 | 2.54e-12 | 66.6 |
| MsG0580025087.01.T01 | MTR_5g057710 | 27.586 | 203 | 121 | 8 | 40 | 231 | 143 | 330 | 3.53e-12 | 66.2 |
| MsG0580025087.01.T01 | MTR_4g014370 | 23.938 | 259 | 135 | 11 | 35 | 249 | 114 | 354 | 3.85e-12 | 66.2 |
| MsG0580025087.01.T01 | MTR_2g021155 | 27.586 | 203 | 124 | 7 | 40 | 231 | 131 | 321 | 6.68e-12 | 65.9 |
| MsG0580025087.01.T01 | MTR_2g425980 | 25.000 | 300 | 175 | 11 | 4 | 259 | 44 | 337 | 8.43e-12 | 65.1 |
| MsG0580025087.01.T01 | MTR_3g013770 | 29.524 | 210 | 119 | 10 | 35 | 231 | 130 | 323 | 8.70e-12 | 65.1 |
| MsG0580025087.01.T01 | MTR_3g011060 | 28.169 | 213 | 121 | 10 | 39 | 235 | 132 | 328 | 8.71e-12 | 65.1 |
| MsG0580025087.01.T01 | MTR_3g083640 | 26.383 | 235 | 127 | 10 | 40 | 259 | 157 | 360 | 1.41e-11 | 64.3 |
| MsG0580025087.01.T01 | MTR_2g025420 | 25.561 | 223 | 138 | 6 | 35 | 231 | 102 | 322 | 1.43e-11 | 64.3 |
| MsG0580025087.01.T01 | MTR_2g028110 | 25.726 | 241 | 147 | 8 | 23 | 242 | 79 | 308 | 1.52e-11 | 64.3 |
| MsG0580025087.01.T01 | MTR_5g057690 | 26.415 | 212 | 122 | 7 | 30 | 231 | 133 | 320 | 1.75e-11 | 63.9 |
| MsG0580025087.01.T01 | MTR_5g096910 | 26.887 | 212 | 132 | 8 | 31 | 229 | 123 | 324 | 1.87e-11 | 63.9 |
| MsG0580025087.01.T01 | MTR_3g011100 | 24.286 | 210 | 126 | 6 | 38 | 231 | 333 | 525 | 3.06e-11 | 63.5 |
| MsG0580025087.01.T01 | MTR_1004s0010 | 29.500 | 200 | 111 | 8 | 38 | 231 | 117 | 292 | 3.14e-11 | 63.2 |
| MsG0580025087.01.T01 | MTR_0760s0010 | 29.500 | 200 | 111 | 8 | 38 | 231 | 147 | 322 | 3.20e-11 | 63.2 |
| MsG0580025087.01.T01 | MTR_3g010450 | 30.405 | 148 | 94 | 5 | 32 | 176 | 83 | 224 | 3.44e-11 | 62.4 |
| MsG0580025087.01.T01 | MTR_7g007300 | 29.048 | 210 | 100 | 10 | 40 | 234 | 206 | 381 | 4.21e-11 | 63.2 |
| MsG0580025087.01.T01 | MTR_0064s0160 | 25.822 | 213 | 129 | 8 | 41 | 231 | 153 | 358 | 4.87e-11 | 62.8 |
| MsG0580025087.01.T01 | MTR_3g010390 | 25.630 | 238 | 154 | 7 | 38 | 261 | 135 | 363 | 5.37e-11 | 62.8 |
| MsG0580025087.01.T01 | MTR_3g030320 | 29.756 | 205 | 116 | 10 | 36 | 231 | 42 | 227 | 6.18e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025087.01.T01 | AT3G07870 | 29.644 | 253 | 144 | 9 | 34 | 261 | 116 | 359 | 3.24e-18 | 84.0 |
Find 60 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGTTGTTTGATTTATAA+AGG | 0.278865 | 5:-13683223 | None:intergenic |
| TATCAGCATGGGAGAATTAA+AGG | 0.316142 | 5:+13683724 | MsG0580025087.01.T01:CDS |
| CCGTTAAAAGCAGTCGGTTT+TGG | 0.318741 | 5:+13683392 | MsG0580025087.01.T01:CDS |
| CAATGAATGTAATGACAATA+TGG | 0.336710 | 5:-13683924 | None:intergenic |
| ACCTTGTATTCATTCGTTTC+AGG | 0.337047 | 5:-13683422 | None:intergenic |
| TCAAGCATCGCTTGCTGAAA+TGG | 0.350748 | 5:-13683479 | None:intergenic |
| GTTAGGAAGAATTATGGTAT+TGG | 0.362506 | 5:+13683797 | MsG0580025087.01.T01:CDS |
| ACCCACATTGTTACATTATG+AGG | 0.373801 | 5:-13683776 | None:intergenic |
| ATGTGGGTTAGGAAGAATTA+TGG | 0.376276 | 5:+13683791 | MsG0580025087.01.T01:CDS |
| ATTGCAACTTCTCACTTTCA+AGG | 0.384584 | 5:-13683640 | None:intergenic |
| TTATTATGTTGAAACACATA+TGG | 0.386896 | 5:-13683677 | None:intergenic |
| CCCTTTAGTCATTTGCAATC+CGG | 0.391703 | 5:+13683316 | MsG0580025087.01.T01:CDS |
| GTCATTTGCAATCCGGTCAC+TGG | 0.392146 | 5:+13683323 | MsG0580025087.01.T01:CDS |
| ACTAAAGGGTTTCCGTTACA+TGG | 0.412920 | 5:-13683302 | None:intergenic |
| ATTGTCATTACATTCATTGA+TGG | 0.426940 | 5:+13683928 | MsG0580025087.01.T01:CDS |
| ATGTGAATGGCACATTTCAT+TGG | 0.429031 | 5:+13683585 | MsG0580025087.01.T01:CDS |
| ATAATGTAACAATGTGGGTT+AGG | 0.431715 | 5:+13683780 | MsG0580025087.01.T01:CDS |
| CCATGAGATGTAGTAGCTTC+AGG | 0.432457 | 5:-13683362 | None:intergenic |
| CCGGATTGCAAATGACTAAA+GGG | 0.472811 | 5:-13683316 | None:intergenic |
| TTGTCATTACATTCATTGAT+GGG | 0.481003 | 5:+13683929 | MsG0580025087.01.T01:CDS |
| TCATTTGCAATCCGGTCACT+GGG | 0.486190 | 5:+13683324 | MsG0580025087.01.T01:CDS |
| CGAAGAGGAAGCTTGAATAT+AGG | 0.490400 | 5:-13683169 | None:intergenic |
| TATTGGAGAATCGTGGACTA+AGG | 0.495909 | 5:+13683814 | MsG0580025087.01.T01:CDS |
| ATGATCAGACTGATAGTTCA+AGG | 0.500682 | 5:+13683546 | MsG0580025087.01.T01:CDS |
| TTGGCCGGTAAAACACTTTG+AGG | 0.502825 | 5:+13683892 | MsG0580025087.01.T01:CDS |
| ATTACATTCATTGATGGGAG+TGG | 0.505524 | 5:+13683934 | MsG0580025087.01.T01:CDS |
| ATCAGCATGGGAGAATTAAA+GGG | 0.505703 | 5:+13683725 | MsG0580025087.01.T01:CDS |
| TTTAAATGTCATATCAGCAT+GGG | 0.510305 | 5:+13683713 | MsG0580025087.01.T01:CDS |
| ACACATGACACTTATGTGAA+TGG | 0.511952 | 5:+13683572 | MsG0580025087.01.T01:CDS |
| ACTTCAACATTTCTCCATGA+TGG | 0.515183 | 5:-13683521 | None:intergenic |
| ACCGGATTGCAAATGACTAA+AGG | 0.519661 | 5:-13683317 | None:intergenic |
| TGAAACACATATGGAGGAGA+AGG | 0.526773 | 5:-13683668 | None:intergenic |
| TGTATTCATTCGTTTCAGGT+TGG | 0.532403 | 5:-13683418 | None:intergenic |
| TTACATTCATTGATGGGAGT+GGG | 0.536460 | 5:+13683935 | MsG0580025087.01.T01:CDS |
| TTCATTGGATTCGTTCGCAA+AGG | 0.542998 | 5:+13683600 | MsG0580025087.01.T01:CDS |
| TTGCTGAAATGGCCTGCCAT+TGG | 0.546133 | 5:-13683468 | None:intergenic |
| GTTATGAACTCCCCAGTGAC+CGG | 0.557195 | 5:-13683335 | None:intergenic |
| CTTACTGCAAATTCTTGCAA+CGG | 0.559791 | 5:+13683260 | MsG0580025087.01.T01:CDS |
| GGGTGAGATATTCCAATGGC+AGG | 0.563617 | 5:+13683456 | MsG0580025087.01.T01:CDS |
| TAAGAAACTTATAGTGAAGA+GGG | 0.564542 | 5:-13683241 | None:intergenic |
| TGTTTGTGTCACCCATGTAA+CGG | 0.570935 | 5:+13683290 | MsG0580025087.01.T01:CDS |
| GTAAGAAACTTATAGTGAAG+AGG | 0.573441 | 5:-13683242 | None:intergenic |
| TCCTCATAATGTAACAATGT+GGG | 0.575455 | 5:+13683775 | MsG0580025087.01.T01:CDS |
| ACACACTTGGAACACCATCA+TGG | 0.576810 | 5:+13683507 | MsG0580025087.01.T01:CDS |
| GCCGGTAAAACACTTTGAGG+AGG | 0.589400 | 5:+13683895 | MsG0580025087.01.T01:CDS |
| ACCTGAAACGAATGAATACA+AGG | 0.594193 | 5:+13683421 | MsG0580025087.01.T01:CDS |
| TTAAAATTGGTATCACGAAG+AGG | 0.601602 | 5:-13683184 | None:intergenic |
| CGTATCCCGTTAAAAGCAGT+CGG | 0.607613 | 5:+13683386 | MsG0580025087.01.T01:CDS |
| CCGGTAAAACACTTTGAGGA+GGG | 0.609793 | 5:+13683896 | MsG0580025087.01.T01:CDS |
| TTATGTTGAAACACATATGG+AGG | 0.612110 | 5:-13683674 | None:intergenic |
| CTAAAGGGTTTCCGTTACAT+GGG | 0.613000 | 5:-13683301 | None:intergenic |
| ATGCTTGAGATACACACACT+TGG | 0.613718 | 5:+13683494 | MsG0580025087.01.T01:CDS |
| GAAACACATATGGAGGAGAA+GGG | 0.614086 | 5:-13683667 | None:intergenic |
| CCTGAAGCTACTACATCTCA+TGG | 0.614718 | 5:+13683362 | MsG0580025087.01.T01:CDS |
| ATCATGGAGAAATGTTGAAG+TGG | 0.636392 | 5:+13683523 | MsG0580025087.01.T01:CDS |
| CTCCTCATAATGTAACAATG+TGG | 0.647287 | 5:+13683774 | MsG0580025087.01.T01:CDS |
| TGGAAGCAACAATCATGTCA+AGG | 0.647720 | 5:+13683141 | None:intergenic |
| ATGTGGGTGAGATATTCCAA+TGG | 0.671296 | 5:+13683452 | MsG0580025087.01.T01:CDS |
| ATTATGGTATTGGAGAATCG+TGG | 0.689915 | 5:+13683807 | MsG0580025087.01.T01:CDS |
| CATTTGCAATCCGGTCACTG+GGG | 0.748420 | 5:+13683325 | MsG0580025087.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATGTTGAAACACATA+TGG | - | Chr5:13683680-13683699 | None:intergenic | 20.0% |
| !!! | TTGTCTCTTCTTTTTAAAAT+TGG | - | Chr5:13683200-13683219 | None:intergenic | 20.0% |
| ! | AATACAAGGTGATAAAAATG+TGG | + | Chr5:13683435-13683454 | MsG0580025087.01.T01:CDS | 25.0% |
| ! | ATACAAGGTGATAAAAATGT+GGG | + | Chr5:13683436-13683455 | MsG0580025087.01.T01:CDS | 25.0% |
| ! | ATTGTCATTACATTCATTGA+TGG | + | Chr5:13683928-13683947 | MsG0580025087.01.T01:CDS | 25.0% |
| ! | CAATGAATGTAATGACAATA+TGG | - | Chr5:13683927-13683946 | None:intergenic | 25.0% |
| ! | TAAGAAACTTATAGTGAAGA+GGG | - | Chr5:13683244-13683263 | None:intergenic | 25.0% |
| ! | TTGTCATTACATTCATTGAT+GGG | + | Chr5:13683929-13683948 | MsG0580025087.01.T01:CDS | 25.0% |
| ! | TTTAAATGTCATATCAGCAT+GGG | + | Chr5:13683713-13683732 | MsG0580025087.01.T01:CDS | 25.0% |
| !! | TTTTAAATGTCATATCAGCA+TGG | + | Chr5:13683712-13683731 | MsG0580025087.01.T01:CDS | 25.0% |
| ATAATGTAACAATGTGGGTT+AGG | + | Chr5:13683780-13683799 | MsG0580025087.01.T01:CDS | 30.0% | |
| GTAAGAAACTTATAGTGAAG+AGG | - | Chr5:13683245-13683264 | None:intergenic | 30.0% | |
| GTTAGGAAGAATTATGGTAT+TGG | + | Chr5:13683797-13683816 | MsG0580025087.01.T01:CDS | 30.0% | |
| TCCTCATAATGTAACAATGT+GGG | + | Chr5:13683775-13683794 | MsG0580025087.01.T01:CDS | 30.0% | |
| TTAAAATTGGTATCACGAAG+AGG | - | Chr5:13683187-13683206 | None:intergenic | 30.0% | |
| TTATGTTGAAACACATATGG+AGG | - | Chr5:13683677-13683696 | None:intergenic | 30.0% | |
| ! | GAGGGTTGTTTGATTTATAA+AGG | - | Chr5:13683226-13683245 | None:intergenic | 30.0% |
| ACACATGACACTTATGTGAA+TGG | + | Chr5:13683572-13683591 | MsG0580025087.01.T01:CDS | 35.0% | |
| ACCCACATTGTTACATTATG+AGG | - | Chr5:13683779-13683798 | None:intergenic | 35.0% | |
| ACCTGAAACGAATGAATACA+AGG | + | Chr5:13683421-13683440 | MsG0580025087.01.T01:CDS | 35.0% | |
| ACCTTGTATTCATTCGTTTC+AGG | - | Chr5:13683425-13683444 | None:intergenic | 35.0% | |
| ACTTCAACATTTCTCCATGA+TGG | - | Chr5:13683524-13683543 | None:intergenic | 35.0% | |
| ATCAGCATGGGAGAATTAAA+GGG | + | Chr5:13683725-13683744 | MsG0580025087.01.T01:CDS | 35.0% | |
| ATCATGGAGAAATGTTGAAG+TGG | + | Chr5:13683523-13683542 | MsG0580025087.01.T01:CDS | 35.0% | |
| ATGATCAGACTGATAGTTCA+AGG | + | Chr5:13683546-13683565 | MsG0580025087.01.T01:CDS | 35.0% | |
| ATGTGAATGGCACATTTCAT+TGG | + | Chr5:13683585-13683604 | MsG0580025087.01.T01:CDS | 35.0% | |
| ATTACATTCATTGATGGGAG+TGG | + | Chr5:13683934-13683953 | MsG0580025087.01.T01:CDS | 35.0% | |
| ATTGCAACTTCTCACTTTCA+AGG | - | Chr5:13683643-13683662 | None:intergenic | 35.0% | |
| CTCCTCATAATGTAACAATG+TGG | + | Chr5:13683774-13683793 | MsG0580025087.01.T01:CDS | 35.0% | |
| CTTACTGCAAATTCTTGCAA+CGG | + | Chr5:13683260-13683279 | MsG0580025087.01.T01:CDS | 35.0% | |
| TATCAGCATGGGAGAATTAA+AGG | + | Chr5:13683724-13683743 | MsG0580025087.01.T01:CDS | 35.0% | |
| TTACATTCATTGATGGGAGT+GGG | + | Chr5:13683935-13683954 | MsG0580025087.01.T01:CDS | 35.0% | |
| ! | ATTATGGTATTGGAGAATCG+TGG | + | Chr5:13683807-13683826 | MsG0580025087.01.T01:CDS | 35.0% |
| ! | TGTATTCATTCGTTTCAGGT+TGG | - | Chr5:13683421-13683440 | None:intergenic | 35.0% |
| !! | ATGTGGGTTAGGAAGAATTA+TGG | + | Chr5:13683791-13683810 | MsG0580025087.01.T01:CDS | 35.0% |
| ACCGGATTGCAAATGACTAA+AGG | - | Chr5:13683320-13683339 | None:intergenic | 40.0% | |
| ACTAAAGGGTTTCCGTTACA+TGG | - | Chr5:13683305-13683324 | None:intergenic | 40.0% | |
| ATGCTTGAGATACACACACT+TGG | + | Chr5:13683494-13683513 | MsG0580025087.01.T01:CDS | 40.0% | |
| ATGTGGGTGAGATATTCCAA+TGG | + | Chr5:13683452-13683471 | MsG0580025087.01.T01:CDS | 40.0% | |
| CCCTTTAGTCATTTGCAATC+CGG | + | Chr5:13683316-13683335 | MsG0580025087.01.T01:CDS | 40.0% | |
| CCGGATTGCAAATGACTAAA+GGG | - | Chr5:13683319-13683338 | None:intergenic | 40.0% | |
| CGAAGAGGAAGCTTGAATAT+AGG | - | Chr5:13683172-13683191 | None:intergenic | 40.0% | |
| CTAAAGGGTTTCCGTTACAT+GGG | - | Chr5:13683304-13683323 | None:intergenic | 40.0% | |
| GAAACACATATGGAGGAGAA+GGG | - | Chr5:13683670-13683689 | None:intergenic | 40.0% | |
| GGCCAATATGAACCAAAAAG+CGG | - | Chr5:13683878-13683897 | None:intergenic | 40.0% | |
| TGAAACACATATGGAGGAGA+AGG | - | Chr5:13683671-13683690 | None:intergenic | 40.0% | |
| TGTTTGTGTCACCCATGTAA+CGG | + | Chr5:13683290-13683309 | MsG0580025087.01.T01:CDS | 40.0% | |
| TTCATTGGATTCGTTCGCAA+AGG | + | Chr5:13683600-13683619 | MsG0580025087.01.T01:CDS | 40.0% | |
| ! | TATTGGAGAATCGTGGACTA+AGG | + | Chr5:13683814-13683833 | MsG0580025087.01.T01:CDS | 40.0% |
| !! | AACGATCTTTCTCCGCTTTT+TGG | + | Chr5:13683863-13683882 | MsG0580025087.01.T01:CDS | 40.0% |
| !! | CAAAACCGACTGCTTTTAAC+GGG | - | Chr5:13683394-13683413 | None:intergenic | 40.0% |
| !! | CCAAAACCGACTGCTTTTAA+CGG | - | Chr5:13683395-13683414 | None:intergenic | 40.0% |
| !!! | CTCCGCTTTTTGGTTCATAT+TGG | + | Chr5:13683873-13683892 | MsG0580025087.01.T01:CDS | 40.0% |
| !!! | GCTTTTTGGTTCATATTGGC+CGG | + | Chr5:13683877-13683896 | MsG0580025087.01.T01:CDS | 40.0% |
| ACACACTTGGAACACCATCA+TGG | + | Chr5:13683507-13683526 | MsG0580025087.01.T01:CDS | 45.0% | |
| CCATGAGATGTAGTAGCTTC+AGG | - | Chr5:13683365-13683384 | None:intergenic | 45.0% | |
| CCTGAAGCTACTACATCTCA+TGG | + | Chr5:13683362-13683381 | MsG0580025087.01.T01:CDS | 45.0% | |
| CGTATCCCGTTAAAAGCAGT+CGG | + | Chr5:13683386-13683405 | MsG0580025087.01.T01:CDS | 45.0% | |
| TCATTTGCAATCCGGTCACT+GGG | + | Chr5:13683324-13683343 | MsG0580025087.01.T01:CDS | 45.0% | |
| TTGGCCGGTAAAACACTTTG+AGG | + | Chr5:13683892-13683911 | MsG0580025087.01.T01:CDS | 45.0% | |
| ! | CCGGTAAAACACTTTGAGGA+GGG | + | Chr5:13683896-13683915 | MsG0580025087.01.T01:CDS | 45.0% |
| ! | TCAAGCATCGCTTGCTGAAA+TGG | - | Chr5:13683482-13683501 | None:intergenic | 45.0% |
| !! | CCCTCCTCAAAGTGTTTTAC+CGG | - | Chr5:13683899-13683918 | None:intergenic | 45.0% |
| !! | CCGTTAAAAGCAGTCGGTTT+TGG | + | Chr5:13683392-13683411 | MsG0580025087.01.T01:CDS | 45.0% |
| CATTTGCAATCCGGTCACTG+GGG | + | Chr5:13683325-13683344 | MsG0580025087.01.T01:CDS | 50.0% | |
| GGGTGAGATATTCCAATGGC+AGG | + | Chr5:13683456-13683475 | MsG0580025087.01.T01:CDS | 50.0% | |
| GTCATTTGCAATCCGGTCAC+TGG | + | Chr5:13683323-13683342 | MsG0580025087.01.T01:CDS | 50.0% | |
| GTTATGAACTCCCCAGTGAC+CGG | - | Chr5:13683338-13683357 | None:intergenic | 50.0% | |
| TTGCTGAAATGGCCTGCCAT+TGG | - | Chr5:13683471-13683490 | None:intergenic | 50.0% | |
| ! | GCCGGTAAAACACTTTGAGG+AGG | + | Chr5:13683895-13683914 | MsG0580025087.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 13683155 | 13683964 | 13683155 | ID=MsG0580025087.01;Name=MsG0580025087.01 |
| Chr5 | mRNA | 13683155 | 13683964 | 13683155 | ID=MsG0580025087.01.T01;Parent=MsG0580025087.01;Name=MsG0580025087.01.T01;_AED=0.42;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|269 |
| Chr5 | exon | 13683155 | 13683964 | 13683155 | ID=MsG0580025087.01.T01:exon:5557;Parent=MsG0580025087.01.T01 |
| Chr5 | CDS | 13683155 | 13683964 | 13683155 | ID=MsG0580025087.01.T01:cds;Parent=MsG0580025087.01.T01 |
| Gene Sequence |
| Protein sequence |
