AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011914.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011914.01.T01 MTR_3g010590 88.083 193 23 0 47 239 194 386 2.10e-118 343
MsG0380011914.01.T01 MTR_3g010590 77.500 40 8 1 11 50 18 56 3.88e-11 62.4
MsG0380011914.01.T01 MTR_3g010520 70.466 193 50 2 47 239 175 360 2.44e-86 260
MsG0380011914.01.T01 MTR_3g023930 70.984 193 48 2 47 239 184 368 4.75e-86 260
MsG0380011914.01.T01 MTR_3g023930 84.314 51 7 1 1 50 1 51 3.74e-20 88.2
MsG0380011914.01.T01 MTR_3g030240 68.912 193 50 3 47 239 196 378 3.14e-82 251
MsG0380011914.01.T01 MTR_3g030240 63.793 58 12 2 1 50 1 57 2.50e-12 65.9
MsG0380011914.01.T01 MTR_3g010920 65.816 196 56 4 47 239 195 382 9.48e-78 239
MsG0380011914.01.T01 MTR_3g024150 63.000 200 61 3 47 239 193 386 1.16e-75 234
MsG0380011914.01.T01 MTR_3g030250 64.796 196 58 3 47 239 193 380 8.03e-75 232
MsG0380011914.01.T01 MTR_3g010870 60.697 201 68 2 44 239 191 385 1.46e-73 229
MsG0380011914.01.T01 MTR_3g010970 61.538 195 65 3 47 239 206 392 5.61e-72 225
MsG0380011914.01.T01 MTR_3g023940 61.340 194 50 3 59 239 203 384 2.09e-68 215
MsG0380011914.01.T01 MTR_3g006500 61.111 198 64 4 47 239 181 370 1.03e-67 213
MsG0380011914.01.T01 MTR_3g010870 60.870 184 61 2 61 239 140 317 6.63e-67 209
MsG0380011914.01.T01 MTR_3g030330 58.621 203 75 4 44 239 172 372 1.16e-65 208
MsG0380011914.01.T01 MTR_3g010620 57.073 205 73 4 47 239 192 393 4.76e-64 204
MsG0380011914.01.T01 MTR_0044s0300 53.846 195 76 3 52 239 203 390 1.48e-61 198
MsG0380011914.01.T01 MTR_1g113900 51.741 201 85 4 44 239 53 246 2.89e-59 187
MsG0380011914.01.T01 MTR_2g078870 52.500 200 85 3 45 239 114 308 2.52e-57 184
MsG0380011914.01.T01 MTR_3g010880 57.979 188 55 5 69 239 161 341 6.38e-57 184
MsG0380011914.01.T01 MTR_6g065980 52.604 192 80 4 53 239 174 359 3.68e-56 183
MsG0380011914.01.T01 MTR_3g030320 50.739 203 85 6 45 239 104 299 2.69e-53 174
MsG0380011914.01.T01 MTR_1g115160 48.718 195 88 4 51 239 179 367 5.86e-52 172
MsG0380011914.01.T01 MTR_1004s0010 49.744 195 85 3 49 239 175 360 5.91e-52 172
MsG0380011914.01.T01 MTR_0760s0010 49.744 195 85 3 49 239 205 390 1.12e-51 172
MsG0380011914.01.T01 MTR_3g036430 52.632 190 80 4 52 239 162 343 1.31e-51 171
MsG0380011914.01.T01 MTR_2g078900 56.442 163 56 4 47 201 191 346 2.64e-51 171
MsG0380011914.01.T01 MTR_5g046300 50.256 195 82 4 51 239 166 351 3.04e-50 167
MsG0380011914.01.T01 MTR_5g046290 50.256 195 82 4 51 239 166 351 3.04e-50 167
MsG0380011914.01.T01 MTR_3g036335 50.000 194 83 5 51 239 211 395 3.67e-50 169
MsG0380011914.01.T01 MTR_5g046280 49.744 195 83 4 51 239 69 254 4.99e-50 164
MsG0380011914.01.T01 MTR_3g083660 48.128 187 89 3 52 236 98 278 1.28e-49 164
MsG0380011914.01.T01 MTR_3g006570 50.254 197 82 5 51 239 189 377 2.65e-49 166
MsG0380011914.01.T01 MTR_2g078850 58.750 160 54 4 68 222 215 367 2.90e-49 166
MsG0380011914.01.T01 MTR_2g021190 48.705 193 81 5 53 239 193 373 3.14e-48 163
MsG0380011914.01.T01 MTR_6g014720 46.970 198 85 6 55 239 185 375 3.19e-46 158
MsG0380011914.01.T01 MTR_1g115185 49.490 196 81 7 55 239 212 400 3.62e-46 158
MsG0380011914.01.T01 MTR_6g013270 47.739 199 82 7 55 239 203 393 4.30e-46 158
MsG0380011914.01.T01 MTR_3g030350 50.000 198 83 5 53 239 199 391 8.04e-46 157
MsG0380011914.01.T01 MTR_3g010430 45.933 209 78 5 49 239 202 393 8.32e-46 157
MsG0380011914.01.T01 MTR_1g114650 49.231 195 79 7 56 239 46 231 1.32e-45 152
MsG0380011914.01.T01 MTR_3g024110 46.500 200 95 4 45 239 256 448 1.84e-45 157
MsG0380011914.01.T01 MTR_3g030310 47.500 200 83 10 54 239 200 391 4.93e-44 152
MsG0380011914.01.T01 MTR_3g006530 46.231 199 94 6 45 239 208 397 9.15e-44 152
MsG0380011914.01.T01 MTR_7g498320 42.105 228 90 7 6 211 9 216 5.35e-43 145
MsG0380011914.01.T01 MTR_1g112930 45.178 197 89 6 50 238 190 375 9.85e-42 146
MsG0380011914.01.T01 MTR_5g011200 44.221 199 89 8 53 239 187 375 1.62e-41 145
MsG0380011914.01.T01 MTR_2g029990 45.408 196 86 6 53 239 220 403 9.43e-41 144
MsG0380011914.01.T01 MTR_3g006640 43.284 201 94 8 52 238 98 292 3.03e-40 140
MsG0380011914.01.T01 MTR_3g083640 43.216 199 96 5 47 239 216 403 7.45e-40 142
MsG0380011914.01.T01 MTR_3g096280 45.361 194 69 4 53 239 180 343 7.88e-40 140
MsG0380011914.01.T01 MTR_5g046260 43.915 189 65 4 51 239 151 298 3.73e-39 137
MsG0380011914.01.T01 MTR_1g055375 41.026 195 100 4 53 239 180 367 3.58e-36 131
MsG0380011914.01.T01 MTR_7g007300 44.041 193 90 7 56 239 263 446 3.87e-36 132
MsG0380011914.01.T01 MTR_3g009240 43.655 197 86 8 52 239 203 383 9.86e-36 130
MsG0380011914.01.T01 MTR_1g114700 43.455 191 96 6 55 239 204 388 1.70e-35 130
MsG0380011914.01.T01 MTR_1g054725 41.117 197 93 7 53 239 193 376 2.01e-35 129
MsG0380011914.01.T01 MTR_4g031770 40.500 200 104 5 53 239 172 369 2.03e-35 129
MsG0380011914.01.T01 MTR_2g021155 41.327 196 98 5 53 239 769 956 2.00e-34 130
MsG0380011914.01.T01 MTR_2g021155 40.000 185 87 7 52 225 202 373 9.05e-32 123
MsG0380011914.01.T01 MTR_3g013770 42.929 198 87 8 52 239 207 388 4.28e-34 126
MsG0380011914.01.T01 MTR_3g036290 39.901 203 93 8 47 239 174 357 5.35e-34 125
MsG0380011914.01.T01 MTR_6g007135 41.584 202 96 7 51 239 198 390 5.78e-34 126
MsG0380011914.01.T01 MTR_3g024130 42.365 203 84 9 50 239 133 315 7.60e-34 124
MsG0380011914.01.T01 MTR_1g058190 40.196 204 93 7 53 237 176 369 7.77e-34 125
MsG0380011914.01.T01 MTR_4g055060 41.837 196 92 7 52 239 206 387 8.18e-34 125
MsG0380011914.01.T01 MTR_3g006670 42.647 204 87 10 52 239 221 410 1.43e-33 125
MsG0380011914.01.T01 MTR_6g027890 40.099 202 95 8 49 239 139 325 4.17e-33 122
MsG0380011914.01.T01 MTR_7g013590 38.835 206 100 7 54 239 205 404 7.68e-33 123
MsG0380011914.01.T01 MTR_6g021880 40.201 199 95 7 53 239 196 382 9.11e-33 122
MsG0380011914.01.T01 MTR_6g007150 38.119 202 102 8 53 239 145 338 1.21e-32 121
MsG0380011914.01.T01 MTR_7g407070 41.919 198 90 8 53 239 216 399 1.41e-32 122
MsG0380011914.01.T01 MTR_6g004660 39.604 202 98 8 51 239 191 381 1.52e-32 122
MsG0380011914.01.T01 MTR_1g055065 39.698 199 97 7 53 239 101 288 3.28e-32 119
MsG0380011914.01.T01 MTR_6g027910 40.933 193 90 7 56 239 198 375 3.63e-32 120
MsG0380011914.01.T01 MTR_3g010390 41.379 203 93 9 50 239 209 398 4.37e-32 121
MsG0380011914.01.T01 MTR_3g436150 41.538 195 92 7 53 239 213 393 9.56e-32 120
MsG0380011914.01.T01 MTR_1g100763 45.562 169 76 7 53 213 138 298 1.44e-31 117
MsG0380011914.01.T01 MTR_3g007410 41.414 198 93 7 49 238 220 402 2.11e-31 119
MsG0380011914.01.T01 MTR_3g011020 40.299 201 93 9 50 239 187 371 2.68e-31 118
MsG0380011914.01.T01 MTR_3g007360 41.414 198 93 7 49 238 220 402 3.60e-31 119
MsG0380011914.01.T01 MTR_3g014540 40.201 199 90 9 52 239 198 378 4.66e-31 118
MsG0380011914.01.T01 MTR_2g021210 37.824 193 99 6 55 239 246 425 5.83e-31 118
MsG0380011914.01.T01 MTR_6g004210 37.900 219 94 7 53 239 208 416 5.84e-31 118
MsG0380011914.01.T01 MTR_3g006550 41.808 177 53 5 64 239 11 138 6.96e-31 111
MsG0380011914.01.T01 MTR_8g062660 41.579 190 87 8 58 239 208 381 9.80e-31 119
MsG0380011914.01.T01 MTR_3g011060 41.379 203 79 10 53 239 209 387 1.28e-30 117
MsG0380011914.01.T01 MTR_3g011100 42.000 200 97 8 52 239 410 602 3.19e-30 118
MsG0380011914.01.T01 MTR_3g009300 40.909 198 92 10 52 239 171 353 1.16e-29 114
MsG0380011914.01.T01 MTR_2g021252 38.624 189 92 6 53 238 217 384 2.28e-29 113
MsG0380011914.01.T01 MTR_1g115180 47.945 146 63 5 99 238 70 208 2.57e-29 109
MsG0380011914.01.T01 MTR_3g007330 40.722 194 95 6 52 239 214 393 2.76e-29 113
MsG0380011914.01.T01 MTR_3g007270 39.216 204 91 9 50 239 226 410 3.90e-29 113
MsG0380011914.01.T01 MTR_3g096250 45.205 146 58 2 94 239 223 346 4.50e-29 112
MsG0380011914.01.T01 MTR_3g014570 40.704 199 90 10 52 239 198 379 8.78e-29 112
MsG0380011914.01.T01 MTR_4g132560 36.946 203 97 8 53 239 72 259 9.84e-29 109
MsG0380011914.01.T01 MTR_3g009310 37.755 196 98 8 52 239 212 391 1.16e-28 112
MsG0380011914.01.T01 MTR_6g048140 36.946 203 110 7 47 239 209 403 1.21e-28 112
MsG0380011914.01.T01 MTR_6g053240 37.245 196 110 7 53 239 205 396 1.63e-28 111
MsG0380011914.01.T01 MTR_7g067680 39.683 189 90 7 55 237 206 376 9.28e-28 109
MsG0380011914.01.T01 MTR_3g009260 40.500 200 88 9 54 239 203 385 9.67e-28 109
MsG0380011914.01.T01 MTR_3g007390 40.722 194 87 9 53 239 32 204 1.03e-27 105
MsG0380011914.01.T01 MTR_6g053260 36.735 196 111 7 53 239 509 700 1.40e-27 110
MsG0380011914.01.T01 MTR_2g435950 39.785 186 91 8 59 239 128 297 1.47e-27 107
MsG0380011914.01.T01 MTR_1g056280 36.216 185 103 4 53 224 28 210 5.41e-27 103
MsG0380011914.01.T01 MTR_1g057890 44.681 141 71 5 99 239 224 357 6.96e-27 106
MsG0380011914.01.T01 MTR_3g007300 37.629 194 97 9 52 239 192 367 9.78e-27 106
MsG0380011914.01.T01 MTR_1g056270 36.458 192 101 7 53 239 47 222 1.36e-26 102
MsG0380011914.01.T01 MTR_3g007430 50.847 118 47 4 53 163 215 328 1.41e-26 106
MsG0380011914.01.T01 MTR_1g056710 39.896 193 101 6 53 238 204 388 2.04e-26 105
MsG0380011914.01.T01 MTR_2g021150 36.019 211 104 11 47 239 172 369 2.76e-26 105
MsG0380011914.01.T01 MTR_5g007610 38.725 204 91 10 52 239 216 401 6.76e-26 104
MsG0380011914.01.T01 MTR_1g055055 40.936 171 86 6 53 217 180 341 7.59e-26 103
MsG0380011914.01.T01 MTR_1g055045 39.130 161 89 6 82 239 8 162 2.01e-25 98.2
MsG0380011914.01.T01 MTR_3g013740 38.693 199 95 9 53 239 224 407 3.09e-25 102
MsG0380011914.01.T01 MTR_6g048120 35.500 200 108 8 54 239 216 408 3.25e-25 102
MsG0380011914.01.T01 MTR_4g061340 37.234 188 95 7 56 239 208 376 5.88e-25 101
MsG0380011914.01.T01 MTR_8g054320 39.548 177 83 8 71 239 141 301 6.14e-25 100
MsG0380011914.01.T01 MTR_5g009060 38.614 202 85 9 53 238 220 398 1.49e-24 100
MsG0380011914.01.T01 MTR_5g056990 36.232 207 103 10 47 239 49 240 6.40e-24 96.3
MsG0380011914.01.T01 MTR_3g024040 34.946 186 108 7 58 239 197 373 7.34e-24 98.6
MsG0380011914.01.T01 MTR_0015s0100 35.450 189 90 6 53 239 99 257 7.74e-24 96.7
MsG0380011914.01.T01 MTR_5g057710 36.232 207 103 10 47 239 204 395 2.90e-23 97.1
MsG0380011914.01.T01 MTR_3g006480 45.833 120 58 3 46 161 118 234 6.25e-23 94.4
MsG0380011914.01.T01 MTR_5g057790 32.766 235 121 10 26 239 176 394 2.25e-22 94.7
MsG0380011914.01.T01 MTR_7g074260 38.342 193 76 7 54 239 71 227 3.47e-22 91.7
MsG0380011914.01.T01 MTR_5g026830 35.514 214 93 10 32 239 107 281 7.18e-22 91.7
MsG0380011914.01.T01 MTR_3g096270 50.459 109 47 2 32 133 140 248 9.10e-22 91.7
MsG0380011914.01.T01 MTR_3g010440 36.757 185 97 7 69 239 154 332 1.01e-21 92.0
MsG0380011914.01.T01 MTR_4g108820 41.176 119 62 3 52 165 175 290 1.39e-21 91.7
MsG0380011914.01.T01 MTR_5g057690 36.788 193 95 8 58 239 208 384 9.69e-21 90.1
MsG0380011914.01.T01 MTR_4g108810 32.171 258 133 12 3 239 1 237 1.75e-20 87.0
MsG0380011914.01.T01 MTR_5g017515 49.485 97 41 3 47 137 99 193 3.64e-20 85.9
MsG0380011914.01.T01 MTR_3g058470 32.447 188 95 5 53 239 216 372 5.24e-20 87.8
MsG0380011914.01.T01 MTR_1g094210 33.005 203 114 9 47 239 209 399 5.89e-20 88.2
MsG0380011914.01.T01 MTR_5g022420 32.227 211 120 8 45 239 175 378 1.43e-19 86.7
MsG0380011914.01.T01 MTR_6g007130 38.281 128 67 5 115 239 4 122 2.89e-19 80.9
MsG0380011914.01.T01 MTR_0707s0020 31.280 211 111 9 53 237 240 442 5.17e-19 85.5
MsG0380011914.01.T01 MTR_6g088385 29.577 213 112 9 53 237 115 317 1.51e-18 83.2
MsG0380011914.01.T01 MTR_3g011660 39.437 142 64 6 104 239 1 126 6.19e-18 77.4
MsG0380011914.01.T01 MTR_1g097560 31.720 186 110 6 58 239 202 374 8.14e-18 81.6
MsG0380011914.01.T01 MTR_5g057020 38.806 134 64 6 47 166 189 318 8.28e-18 81.6
MsG0380011914.01.T01 MTR_4g107820 33.663 202 104 9 52 239 201 386 1.28e-17 81.3
MsG0380011914.01.T01 MTR_4g107780 33.663 202 104 9 52 239 201 386 1.28e-17 81.3
MsG0380011914.01.T01 MTR_4g107820 33.663 202 104 9 52 239 201 386 1.41e-17 81.3
MsG0380011914.01.T01 MTR_4g107780 33.663 202 104 9 52 239 201 386 1.41e-17 81.3
MsG0380011914.01.T01 MTR_6g086920 29.545 220 119 7 53 238 252 469 1.89e-17 81.3
MsG0380011914.01.T01 MTR_3g080370 28.829 222 117 8 53 238 201 417 2.80e-17 80.5
MsG0380011914.01.T01 MTR_6g016285 29.091 220 119 6 53 238 201 417 3.43e-17 80.5
MsG0380011914.01.T01 MTR_2g047892 30.093 216 111 9 54 238 190 396 4.31e-17 79.7
MsG0380011914.01.T01 MTR_1g094210 32.961 179 99 7 47 215 209 376 1.15e-16 78.6
MsG0380011914.01.T01 MTR_1g050542 34.343 198 100 11 58 239 222 405 1.42e-16 78.6
MsG0380011914.01.T01 MTR_2g046800 34.359 195 109 8 53 239 210 393 2.26e-16 77.8
MsG0380011914.01.T01 MTR_2g046900 30.612 196 110 9 58 239 202 385 2.27e-16 77.8
MsG0380011914.01.T01 MTR_2g055970 31.980 197 107 10 57 239 378 561 2.41e-16 78.2
MsG0380011914.01.T01 MTR_2g046830 31.250 192 110 10 58 238 195 375 4.67e-16 77.0
MsG0380011914.01.T01 MTR_2g046920 32.461 191 108 10 58 239 195 373 5.73e-16 76.6
MsG0380011914.01.T01 MTR_2g060555 40.833 120 65 5 47 161 100 218 8.86e-16 75.1
MsG0380011914.01.T01 MTR_6g007140 36.364 110 59 4 115 222 4 104 1.00e-15 72.4
MsG0380011914.01.T01 MTR_4g133170 28.061 196 120 8 54 239 172 356 1.13e-15 75.9
MsG0380011914.01.T01 MTR_1g097330 32.768 177 90 9 58 217 183 347 1.95e-15 75.1
MsG0380011914.01.T01 MTR_5g056020 29.515 227 116 9 49 238 201 420 3.15e-15 74.7
MsG0380011914.01.T01 MTR_1g097490 31.088 193 100 8 58 239 221 391 4.14e-15 73.9
MsG0380011914.01.T01 MTR_6g092560 28.169 213 120 8 53 237 187 394 1.83e-14 72.4
MsG0380011914.01.T01 MTR_2g426070 31.694 183 99 8 54 221 195 366 2.07e-14 72.0
MsG0380011914.01.T01 MTR_7g057270 28.054 221 118 9 52 238 200 413 2.29e-14 72.0
MsG0380011914.01.T01 MTR_8g467140 35.294 119 65 4 58 164 200 318 3.02e-14 71.2
MsG0380011914.01.T01 MTR_0097s0060 62.903 62 10 3 1 50 1 61 3.61e-14 67.4
MsG0380011914.01.T01 MTR_2g046860 36.885 122 66 5 53 164 81 201 4.06e-14 70.9
MsG0380011914.01.T01 MTR_1g054575 39.130 115 61 4 58 164 219 332 4.22e-14 71.6
MsG0380011914.01.T01 MTR_3g010870 68.889 45 14 0 47 91 194 238 4.78e-14 70.5
MsG0380011914.01.T01 MTR_4g037465 27.751 209 128 6 51 239 189 394 5.03e-14 70.9
MsG0380011914.01.T01 MTR_1g056290 33.939 165 74 5 81 239 180 315 5.74e-14 70.5
MsG0380011914.01.T01 MTR_7g066100 29.439 214 115 9 51 238 190 393 6.37e-14 70.9
MsG0380011914.01.T01 MTR_1g097510 36.752 117 64 4 57 164 89 204 1.04e-13 69.3
MsG0380011914.01.T01 MTR_7g070880 34.000 150 70 5 54 174 213 362 1.20e-13 70.1
MsG0380011914.01.T01 MTR_0128s0020 27.230 213 124 8 47 237 189 392 1.20e-13 69.7
MsG0380011914.01.T01 MTR_7g070830 28.372 215 117 8 54 238 213 420 1.26e-13 70.1
MsG0380011914.01.T01 MTR_5g058620 29.333 225 112 9 55 237 61 280 4.86e-13 67.4
MsG0380011914.01.T01 MTR_1g058870 29.333 225 112 9 55 237 61 280 4.86e-13 67.4
MsG0380011914.01.T01 MTR_8g101580 29.897 194 110 8 58 239 216 395 5.02e-13 68.2
MsG0380011914.01.T01 MTR_7g055930 34.752 141 59 5 54 163 206 344 1.29e-12 67.0
MsG0380011914.01.T01 MTR_4g013185 35.897 156 59 8 53 178 199 343 1.53e-12 66.6
MsG0380011914.01.T01 MTR_7g066840 29.018 224 104 11 55 238 189 397 1.83e-12 66.6
MsG0380011914.01.T01 MTR_2g426020 26.131 199 122 10 55 239 190 377 2.18e-12 66.2
MsG0380011914.01.T01 MTR_2g028140 33.065 124 68 5 55 163 198 321 2.39e-12 66.2
MsG0380011914.01.T01 MTR_7g066030 27.138 269 145 11 9 238 146 402 2.66e-12 65.9
MsG0380011914.01.T01 MTR_2g028130 28.177 181 109 8 55 219 194 369 2.78e-12 65.9
MsG0380011914.01.T01 MTR_0128s0070 25.592 211 130 8 47 237 192 395 5.37e-12 65.1
MsG0380011914.01.T01 MTR_2g010920 24.324 222 132 7 49 238 207 424 5.76e-12 65.1
MsG0380011914.01.T01 MTR_7g066850 28.319 226 112 14 55 238 187 404 7.38e-12 64.7
MsG0380011914.01.T01 MTR_7g055987 34.177 158 78 7 52 187 182 335 7.50e-12 64.7
MsG0380011914.01.T01 MTR_2g426090 27.000 200 115 11 55 239 192 375 7.74e-12 64.7
MsG0380011914.01.T01 MTR_0267s0050 33.333 135 69 4 50 163 180 314 7.97e-12 64.7
MsG0380011914.01.T01 MTR_1g097370 33.553 152 82 8 58 193 164 312 8.03e-12 64.7
MsG0380011914.01.T01 MTR_7g061940 29.530 149 80 5 47 180 91 229 8.29e-12 63.5
MsG0380011914.01.T01 MTR_2g025420 26.341 205 125 9 54 239 196 393 1.31e-11 63.9
MsG0380011914.01.T01 MTR_4g019990 30.189 212 108 10 56 237 186 387 1.34e-11 63.9
MsG0380011914.01.T01 MTR_3g464470 27.083 240 136 9 32 238 146 379 1.91e-11 63.5
MsG0380011914.01.T01 MTR_0128s0010 26.961 204 128 7 53 238 197 397 2.25e-11 63.2
MsG0380011914.01.T01 MTR_7g445890 28.251 223 110 12 56 238 170 382 2.73e-11 62.8
MsG0380011914.01.T01 MTR_2g028160 27.481 262 146 12 13 239 137 389 2.84e-11 63.2
MsG0380011914.01.T01 MTR_6g055210 29.952 207 100 10 53 229 199 390 3.11e-11 62.8
MsG0380011914.01.T01 MTR_7g028660 27.488 211 114 7 52 238 183 378 3.58e-11 62.4
MsG0380011914.01.T01 MTR_3g083010 27.586 203 122 10 55 239 199 394 5.70e-11 62.0
MsG0380011914.01.T01 MTR_2g025960 27.660 188 117 9 48 220 91 274 6.07e-11 61.6
MsG0380011914.01.T01 MTR_7g070900 30.952 168 62 7 51 191 262 402 7.07e-11 62.0
MsG0380011914.01.T01 MTR_7g056173 31.081 148 71 4 47 163 41 188 8.71e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGCGGCGGTGGGAATGTT+AGG 0.183317 3:-7886225 None:intergenic
ATACTTTGGGGACTGATTAT+TGG 0.257323 3:+7886741 MsG0380011914.01.T01:CDS
TTGATAGGATTGTCAATGTT+TGG 0.310941 3:+7886981 MsG0380011914.01.T01:CDS
CCACAAATGAGGTCAGAATA+TGG 0.318656 3:-7886782 None:intergenic
GTTTGGATTATGAAGGAGTA+TGG 0.326969 3:+7886998 MsG0380011914.01.T01:CDS
AAACCCCGATCTTGCATGTT+AGG 0.364708 3:-7887055 None:intergenic
TCATTCTCATTCTTGAAATC+AGG 0.375154 3:-7886908 None:intergenic
CCATATTCTGACCTCATTTG+TGG 0.385795 3:+7886782 MsG0380011914.01.T01:CDS
TTGTTAGTGGCACTGTTAAT+TGG 0.387213 3:+7886816 MsG0380011914.01.T01:CDS
AGAAATATATGAAACAGTAT+AGG 0.392438 3:-7887101 None:intergenic
GAAATATATGAAACAGTATA+GGG 0.410280 3:-7887100 None:intergenic
TGAGATTCTCTGTAGGCTTC+CGG 0.411711 3:+7886279 MsG0380011914.01.T01:CDS
GTTGGAAGCTCCGGCGGCGG+TGG 0.419261 3:-7886235 None:intergenic
TGTTCCTAACATGCAAGATC+GGG 0.425336 3:+7887051 MsG0380011914.01.T01:CDS
CGTTGCCTCCGAGTGGCGGT+TGG 0.431735 3:-7886190 None:intergenic
TTCTGACCTCATTTGTGGAC+AGG 0.439153 3:+7886787 MsG0380011914.01.T01:CDS
ACTCGGAGGCAACGATTGAC+TGG 0.448822 3:+7886199 MsG0380011914.01.T01:CDS
TCGAAGTCGCATTGAGAAGT+TGG 0.451084 3:+7887159 MsG0380011914.01.T01:CDS
GGACAGGGAGTATTTGTTAG+TGG 0.453104 3:+7886803 MsG0380011914.01.T01:CDS
TGTCAATGTTTGGATTATGA+AGG 0.458410 3:+7886991 MsG0380011914.01.T01:CDS
GTGTTCCTAACATGCAAGAT+CGG 0.482020 3:+7887050 MsG0380011914.01.T01:CDS
AACGGAAGAGTTGGAAGCTC+CGG 0.485107 3:-7886244 None:intergenic
CACAAATGAGGTCAGAATAT+GGG 0.485634 3:-7886781 None:intergenic
GTTGCCTCCGAGTGGCGGTT+GGG 0.488279 3:-7886189 None:intergenic
AATATTCAAAGTATCAGTCT+TGG 0.494565 3:-7887194 None:intergenic
ATAGGGTTCGAGATCTTCAT+AGG 0.497054 3:-7887083 None:intergenic
CGGCGGCGGTGGGAATGTTA+GGG 0.499971 3:-7886224 None:intergenic
ATCTCAGGCAGGAGATCAAA+CGG 0.503101 3:-7886262 None:intergenic
TGAGGATGACCAACTGCTGG+TGG 0.513027 3:+7887123 MsG0380011914.01.T01:CDS
CCTAACATTCCCACCGCCGC+CGG 0.514302 3:+7886225 MsG0380011914.01.T01:CDS
AGGAGATCAAACGGAAGAGT+TGG 0.519632 3:-7886253 None:intergenic
GGAAGCCTACAGAGAATCTC+AGG 0.526342 3:-7886277 None:intergenic
TACTGTTTCATATATTTCTG+AGG 0.529153 3:+7887105 MsG0380011914.01.T01:CDS
AGTATGGAAATCGTGAGTCT+TGG 0.531674 3:+7887014 MsG0380011914.01.T01:CDS
TGATTATTGGACAAGAATAC+AGG 0.537972 3:+7886754 MsG0380011914.01.T01:CDS
GAGGATGACCAACTGCTGGT+GGG 0.538432 3:+7887124 MsG0380011914.01.T01:CDS
TAGTGGCACTGTTAATTGGT+TGG 0.552168 3:+7886820 MsG0380011914.01.T01:CDS
TTCTGAGGATGACCAACTGC+TGG 0.554311 3:+7887120 MsG0380011914.01.T01:CDS
TCTTTCTCTTGATTTAGAGA+AGG 0.556477 3:+7886862 MsG0380011914.01.T01:CDS
GAGAATGATACGTTGACCTT+GGG 0.558318 3:+7886923 MsG0380011914.01.T01:CDS
TTGGAAGCTCCGGCGGCGGT+GGG 0.569272 3:-7886234 None:intergenic
CGTTGACCTTGGGTGTGGTG+AGG 0.570466 3:+7886933 MsG0380011914.01.T01:CDS
AGAGTTGGAAGCTCCGGCGG+CGG 0.570782 3:-7886238 None:intergenic
AGGATGACCAACTGCTGGTG+GGG 0.574662 3:+7887125 MsG0380011914.01.T01:CDS
GTTGACCTTGGGTGTGGTGA+GGG 0.582130 3:+7886934 MsG0380011914.01.T01:CDS
GCCTACAGAGAATCTCAGGC+AGG 0.587159 3:-7886273 None:intergenic
ATACTCCCTGTCCACAAATG+AGG 0.588739 3:-7886793 None:intergenic
CAATCGTTGCCTCCGAGTGG+CGG 0.594218 3:-7886194 None:intergenic
GGAAGAGTTGGAAGCTCCGG+CGG 0.598176 3:-7886241 None:intergenic
TGAGAATGATACGTTGACCT+TGG 0.602356 3:+7886922 MsG0380011914.01.T01:CDS
TCTGACCTCATTTGTGGACA+GGG 0.607427 3:+7886788 MsG0380011914.01.T01:CDS
TCTCATTCTTGAAATCAGGT+AGG 0.621451 3:-7886904 None:intergenic
AGGATGACCCAACCGCCACT+CGG 0.624863 3:+7886182 MsG0380011914.01.T01:CDS
TCCTGCCTGAGATTCTCTGT+AGG 0.631823 3:+7886272 MsG0380011914.01.T01:CDS
TGATACGTTGACCTTGGGTG+TGG 0.638535 3:+7886928 MsG0380011914.01.T01:CDS
GCAATCCCTCACCACACCCA+AGG 0.639539 3:-7886939 None:intergenic
TTATCGTAGAGAAATGGCGA+TGG 0.640952 3:+7886150 None:intergenic
TATCGTAGAGAAATGGCGAT+GGG 0.645889 3:+7886151 None:intergenic
GTTCCTAACATGCAAGATCG+GGG 0.648142 3:+7887052 MsG0380011914.01.T01:CDS
AGTCAATCGTTGCCTCCGAG+TGG 0.666588 3:-7886197 None:intergenic
ATGACCCAACCGCCACTCGG+AGG 0.683153 3:+7886185 MsG0380011914.01.T01:CDS
AATGGCGATGGGTAACGATG+AGG 0.688522 3:+7886162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATATGAAACAGTAT+AGG - Chr3:7887104-7887123 None:intergenic 20.0%
!! CAATAACTTAAACTTTCTAA+TGG - Chr3:7886618-7886637 None:intergenic 20.0%
!! GAAATATATGAAACAGTATA+GGG - Chr3:7887103-7887122 None:intergenic 20.0%
!!! AAGTTTTTGTTTATACTTTG+GGG + Chr3:7886729-7886748 MsG0380011914.01.T01:CDS 20.0%
!!! GAAGTTTTTGTTTATACTTT+GGG + Chr3:7886728-7886747 MsG0380011914.01.T01:CDS 20.0%
!!! TCATTTCATTGATGATTATA+AGG + Chr3:7886682-7886701 MsG0380011914.01.T01:intron 20.0%
!!! TGAAGTTTTTGTTTATACTT+TGG + Chr3:7886727-7886746 MsG0380011914.01.T01:CDS 20.0%
! AACTTAAACTTTCTAATGGA+AGG - Chr3:7886614-7886633 None:intergenic 25.0%
! ACTTAAACTTTCTAATGGAA+GGG - Chr3:7886613-7886632 None:intergenic 25.0%
! GAGAATTGAAAAACTTACAA+AGG - Chr3:7886330-7886349 None:intergenic 25.0%
!! AATATTCAAAGTATCAGTCT+TGG - Chr3:7887197-7887216 None:intergenic 25.0%
!! TACTGTTTCATATATTTCTG+AGG + Chr3:7887105-7887124 MsG0380011914.01.T01:CDS 25.0%
GTAACCTCAAAAAACAACTT+GGG + Chr3:7886415-7886434 MsG0380011914.01.T01:intron 30.0%
TCATTCTCATTCTTGAAATC+AGG - Chr3:7886911-7886930 None:intergenic 30.0%
TCTTTCTCTTGATTTAGAGA+AGG + Chr3:7886862-7886881 MsG0380011914.01.T01:CDS 30.0%
TGATTATTGGACAAGAATAC+AGG + Chr3:7886754-7886773 MsG0380011914.01.T01:CDS 30.0%
TGTCAATGTTTGGATTATGA+AGG + Chr3:7886991-7887010 MsG0380011914.01.T01:CDS 30.0%
TTGATAGGATTGTCAATGTT+TGG + Chr3:7886981-7887000 MsG0380011914.01.T01:CDS 30.0%
! GCTTTTCTTCATATAAGCTT+TGG + Chr3:7886653-7886672 MsG0380011914.01.T01:intron 30.0%
!! TCATAGTTGTTTTCAAACTC+AGG - Chr3:7887220-7887239 None:intergenic 30.0%
!! TGAAGAAAAGCATTATCCAA+AGG - Chr3:7886644-7886663 None:intergenic 30.0%
!!! AGATGTTTTTTTGCGAATTC+TGG - Chr3:7886364-7886383 None:intergenic 30.0%
CACAAATGAGGTCAGAATAT+GGG - Chr3:7886784-7886803 None:intergenic 35.0%
GGTAACCTCAAAAAACAACT+TGG + Chr3:7886414-7886433 MsG0380011914.01.T01:intron 35.0%
GTAGAAGTAGAAAAAACCGA+GGG - Chr3:7886469-7886488 None:intergenic 35.0%
GTTTGGATTATGAAGGAGTA+TGG + Chr3:7886998-7887017 MsG0380011914.01.T01:CDS 35.0%
TCTCATTCTTGAAATCAGGT+AGG - Chr3:7886907-7886926 None:intergenic 35.0%
TGTCCATTTGTGAGATTAGT+AGG - Chr3:7886509-7886528 None:intergenic 35.0%
TTGTTAGTGGCACTGTTAAT+TGG + Chr3:7886816-7886835 MsG0380011914.01.T01:CDS 35.0%
! ATACTTTGGGGACTGATTAT+TGG + Chr3:7886741-7886760 MsG0380011914.01.T01:CDS 35.0%
! GTTTAAGTTATTGCCTCCTT+TGG + Chr3:7886625-7886644 MsG0380011914.01.T01:intron 35.0%
!! AGAAAAGCATTATCCAAAGG+AGG - Chr3:7886641-7886660 None:intergenic 35.0%
!! TAGAAAAAACCGAGGGTATT+GGG - Chr3:7886462-7886481 None:intergenic 35.0%
!!! ATGTCGGTTCTTTTTTTCTG+TGG + Chr3:7886585-7886604 MsG0380011914.01.T01:intron 35.0%
!!! GTGTTTTTGCAGGTATTGAT+AGG + Chr3:7886966-7886985 MsG0380011914.01.T01:CDS 35.0%
!!! TGTTTTTTGAGGTTACCATC+AGG - Chr3:7886411-7886430 None:intergenic 35.0%
AGCTGTACGAGTAATTTGAC+CGG - Chr3:7886301-7886320 None:intergenic 40.0%
AGTATGGAAATCGTGAGTCT+TGG + Chr3:7887014-7887033 MsG0380011914.01.T01:CDS 40.0%
ATAGGGTTCGAGATCTTCAT+AGG - Chr3:7887086-7887105 None:intergenic 40.0%
CCACAAATGAGGTCAGAATA+TGG - Chr3:7886785-7886804 None:intergenic 40.0%
CCATATTCTGACCTCATTTG+TGG + Chr3:7886782-7886801 MsG0380011914.01.T01:CDS 40.0%
CCATTTGTGAGATTAGTAGG+AGG - Chr3:7886506-7886525 None:intergenic 40.0%
CCTCCTACTAATCTCACAAA+TGG + Chr3:7886503-7886522 MsG0380011914.01.T01:intron 40.0%
GAGAATGATACGTTGACCTT+GGG + Chr3:7886923-7886942 MsG0380011914.01.T01:CDS 40.0%
GGTAGAAGTAGAAAAAACCG+AGG - Chr3:7886470-7886489 None:intergenic 40.0%
GTGTTCCTAACATGCAAGAT+CGG + Chr3:7887050-7887069 MsG0380011914.01.T01:CDS 40.0%
TAGTGGCACTGTTAATTGGT+TGG + Chr3:7886820-7886839 MsG0380011914.01.T01:CDS 40.0%
TGAGAATGATACGTTGACCT+TGG + Chr3:7886922-7886941 MsG0380011914.01.T01:CDS 40.0%
TGTTCCTAACATGCAAGATC+GGG + Chr3:7887051-7887070 MsG0380011914.01.T01:CDS 40.0%
TGTTGCGTGGTGATTAATGT+CGG + Chr3:7886569-7886588 MsG0380011914.01.T01:intron 40.0%
! GTAGAAAAAACCGAGGGTAT+TGG - Chr3:7886463-7886482 None:intergenic 40.0%
!! AGAAAAAACCGAGGGTATTG+GGG - Chr3:7886461-7886480 None:intergenic 40.0%
!! GATTGCTTGTGTGTTTTTGC+AGG + Chr3:7886956-7886975 MsG0380011914.01.T01:CDS 40.0%
!!! CTCACCCAAGTTGTTTTTTG+AGG - Chr3:7886422-7886441 None:intergenic 40.0%
!!! TTTTTGAGGTTACCATCAGG+TGG - Chr3:7886408-7886427 None:intergenic 40.0%
AAACCCCGATCTTGCATGTT+AGG - Chr3:7887058-7887077 None:intergenic 45.0%
AGGAGATCAAACGGAAGAGT+TGG - Chr3:7886256-7886275 None:intergenic 45.0%
ATACTCCCTGTCCACAAATG+AGG - Chr3:7886796-7886815 None:intergenic 45.0%
ATCTCAGGCAGGAGATCAAA+CGG - Chr3:7886265-7886284 None:intergenic 45.0%
GTAGGAGGTCTGTGTAACAA+CGG - Chr3:7886491-7886510 None:intergenic 45.0%
GTTCCTAACATGCAAGATCG+GGG + Chr3:7887052-7887071 MsG0380011914.01.T01:CDS 45.0%
TCATGATTCCCCAATACCCT+CGG + Chr3:7886450-7886469 MsG0380011914.01.T01:intron 45.0%
TCGAAGTCGCATTGAGAAGT+TGG + Chr3:7887159-7887178 MsG0380011914.01.T01:CDS 45.0%
TCTGACCTCATTTGTGGACA+GGG + Chr3:7886788-7886807 MsG0380011914.01.T01:CDS 45.0%
TGAGATTCTCTGTAGGCTTC+CGG + Chr3:7886279-7886298 MsG0380011914.01.T01:CDS 45.0%
TTCTGACCTCATTTGTGGAC+AGG + Chr3:7886787-7886806 MsG0380011914.01.T01:CDS 45.0%
! CACGTAATGTGCTATTGCGA+TGG + Chr3:7886539-7886558 MsG0380011914.01.T01:intron 45.0%
!! GGACAGGGAGTATTTGTTAG+TGG + Chr3:7886803-7886822 MsG0380011914.01.T01:CDS 45.0%
AACGGAAGAGTTGGAAGCTC+CGG - Chr3:7886247-7886266 None:intergenic 50.0%
GAAAAAACCCCACCAGCAGT+TGG - Chr3:7887135-7887154 None:intergenic 50.0%
GGAAGCCTACAGAGAATCTC+AGG - Chr3:7886280-7886299 None:intergenic 50.0%
TCCTGCCTGAGATTCTCTGT+AGG + Chr3:7886272-7886291 MsG0380011914.01.T01:CDS 50.0%
TGATACGTTGACCTTGGGTG+TGG + Chr3:7886928-7886947 MsG0380011914.01.T01:CDS 50.0%
TTGAGGTTACCATCAGGTGG+TGG - Chr3:7886405-7886424 None:intergenic 50.0%
! CGATGGCATCTTTTGTTGCG+TGG + Chr3:7886556-7886575 MsG0380011914.01.T01:intron 50.0%
! TTCTGAGGATGACCAACTGC+TGG + Chr3:7887120-7887139 MsG0380011914.01.T01:CDS 50.0%
ACTCGGAGGCAACGATTGAC+TGG + Chr3:7886199-7886218 MsG0380011914.01.T01:CDS 55.0%
AGGATGACCAACTGCTGGTG+GGG + Chr3:7887125-7887144 MsG0380011914.01.T01:CDS 55.0%
AGTCAATCGTTGCCTCCGAG+TGG - Chr3:7886200-7886219 None:intergenic 55.0%
GAGGATGACCAACTGCTGGT+GGG + Chr3:7887124-7887143 MsG0380011914.01.T01:CDS 55.0%
GCCTACAGAGAATCTCAGGC+AGG - Chr3:7886276-7886295 None:intergenic 55.0%
GTTGACCTTGGGTGTGGTGA+GGG + Chr3:7886934-7886953 MsG0380011914.01.T01:CDS 55.0%
TGAGGATGACCAACTGCTGG+TGG + Chr3:7887123-7887142 MsG0380011914.01.T01:CDS 55.0%
! AACAAAGCGCCACCACCTGA+TGG + Chr3:7886393-7886412 MsG0380011914.01.T01:intron 55.0%
AGGATGACCCAACCGCCACT+CGG + Chr3:7886182-7886201 MsG0380011914.01.T01:CDS 60.0%
CAATCGTTGCCTCCGAGTGG+CGG - Chr3:7886197-7886216 None:intergenic 60.0%
CGTTGACCTTGGGTGTGGTG+AGG + Chr3:7886933-7886952 MsG0380011914.01.T01:CDS 60.0%
GCAATCCCTCACCACACCCA+AGG - Chr3:7886942-7886961 None:intergenic 60.0%
GGAAGAGTTGGAAGCTCCGG+CGG - Chr3:7886244-7886263 None:intergenic 60.0%
AGAGTTGGAAGCTCCGGCGG+CGG - Chr3:7886241-7886260 None:intergenic 65.0%
ATGACCCAACCGCCACTCGG+AGG + Chr3:7886185-7886204 MsG0380011914.01.T01:CDS 65.0%
CCTAACATTCCCACCGCCGC+CGG + Chr3:7886225-7886244 MsG0380011914.01.T01:CDS 65.0%
CGGCGGCGGTGGGAATGTTA+GGG - Chr3:7886227-7886246 None:intergenic 65.0%
GTTGCCTCCGAGTGGCGGTT+GGG - Chr3:7886192-7886211 None:intergenic 65.0%
CCGGCGGCGGTGGGAATGTT+AGG - Chr3:7886228-7886247 None:intergenic 70.0%
CGTTGCCTCCGAGTGGCGGT+TGG - Chr3:7886193-7886212 None:intergenic 70.0%
TTGGAAGCTCCGGCGGCGGT+GGG - Chr3:7886237-7886256 None:intergenic 70.0%
GTTGGAAGCTCCGGCGGCGG+TGG - Chr3:7886238-7886257 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 7886163 7887285 7886163 ID=MsG0380011914.01;Name=MsG0380011914.01
Chr3 mRNA 7886163 7887285 7886163 ID=MsG0380011914.01.T01;Parent=MsG0380011914.01;Name=MsG0380011914.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|239
Chr3 exon 7886163 7886300 7886163 ID=MsG0380011914.01.T01:exon:3354;Parent=MsG0380011914.01.T01
Chr3 exon 7886704 7887285 7886704 ID=MsG0380011914.01.T01:exon:3353;Parent=MsG0380011914.01.T01
Chr3 CDS 7886163 7886300 7886163 ID=MsG0380011914.01.T01:cds;Parent=MsG0380011914.01.T01
Chr3 CDS 7886704 7887285 7886704 ID=MsG0380011914.01.T01:cds;Parent=MsG0380011914.01.T01
Gene Sequence

>MsG0380011914.01.T01

ATGGCGATGGGTAACGATGAGGATGACCCAACCGCCACTCGGAGGCAACGATTGACTGGAACCCTAACATTCCCACCGCCGCCGGAGCTTCCAACTCTTCCGTTTGATCTCCTGCCTGAGATTCTCTGTAGGCTTCCGGTCATTCTTCTTTCTGACAAAAATGAAGTTTTTGTTTATACTTTGGGGACTGATTATTGGACAAGAATACAGGACATCCCATATTCTGACCTCATTTGTGGACAGGGAGTATTTGTTAGTGGCACTGTTAATTGGTTGGCATTTGATGATTCACATATTCTTTCTCTTGATTTAGAGAAGGAGTCATATCAACAACTTTTCCTACCTGATTTCAAGAATGAGAATGATACGTTGACCTTGGGTGTGGTGAGGGATTGCTTGTGTGTTTTTGCAGGTATTGATAGGATTGTCAATGTTTGGATTATGAAGGAGTATGGAAATCGTGAGTCTTGGACTAAATTGTATAGTGTTCCTAACATGCAAGATCGGGGTTTAGACGCCTATGAAGATCTCGAACCCTATACTGTTTCATATATTTCTGAGGATGACCAACTGCTGGTGGGGTTTTTTCATTTTCGAAGTCGCATTGAGAAGTTGGTTGTTTATGATTCCAAGACTGATACTTTGAATATTCCTGAGTTTGAAAACAACTATGAACTGATATACTCAAATGTCTACATTGAGAGTTTGATATCACCTTAA
Protein sequence

>MsG0380011914.01.T01

MAMGNDEDDPTATRRQRLTGTLTFPPPPELPTLPFDLLPEILCRLPVILLSDKNEVFVYTLGTDYWTRIQDIPYSDLICGQGVFVSGTVNWLAFDDSHILSLDLEKESYQQLFLPDFKNENDTLTLGVVRDCLCVFAGIDRIVNVWIMKEYGNRESWTKLYSVPNMQDRGLDAYEDLEPYTVSYISEDDQLLVGFFHFRSRIEKLVVYDSKTDTLNIPEFENNYELIYSNVYIESLISP*