AlfalfaGEDB | MsG0780039758.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039758.01

KEGG: -
GO: GO:0005515
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039758.01.T01	XP_003624064.1	66.438	438	139	5	1	437	3	433	0	551

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039758.01.T01	Q9SU30	29.023	348	180	16	13	344	8	304	6.22E-17	85.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039758.01.T01	G7L6M5	66.438	438	139	5	1	437	3	433	0.0	551

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0080047824.01	MsG0780039758.01	PPI
MsG0080048101.01	MsG0780039758.01	PPI
MsG0080048486.01	MsG0780039758.01	PPI
MsG0080048487.01	MsG0780039758.01	PPI
MsG0080048487.01	MsG0780039758.01	PPI
MsG0080048487.01	MsG0780039758.01	PPI
MsG0180000330.01	MsG0780039758.01	PPI
MsG0180000330.01	MsG0780039758.01	PPI
MsG0180000330.01	MsG0780039758.01	PPI
MsG0180000447.01	MsG0780039758.01	PPI

Showing 1 to 10 of 578 entries

Previous1 2 3 4 5…58Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039758.01.T01	MTR_7g078840	66.438	438	139	5	1	437	3	433	0.0	551
MsG0780039758.01.T01	MTR_7g078900	58.042	429	164	4	8	436	11	423	1.66e-169	482
MsG0780039758.01.T01	MTR_4g013185	52.232	448	182	9	1	437	1	427	1.92e-149	431
MsG0780039758.01.T01	MTR_7g078880	86.134	238	14	1	195	432	93	311	6.38e-144	416
MsG0780039758.01.T01	MTR_7g078880	63.934	122	12	1	1	122	1	90	9.14e-39	144
MsG0780039758.01.T01	MTR_7g079160	55.425	424	155	10	7	412	6	413	1.77e-143	418
MsG0780039758.01.T01	MTR_7g078860	56.448	411	150	9	1	408	1	385	2.05e-143	415
MsG0780039758.01.T01	MTR_4g013175	53.915	447	174	9	1	436	1	426	4.63e-143	415
MsG0780039758.01.T01	MTR_4g013180	51.515	429	172	7	8	435	10	403	8.80e-141	411
MsG0780039758.01.T01	MTR_7g078040	52.455	448	186	10	1	436	1	433	1.35e-140	409

Showing 1 to 10 of 387 entries

Previous1 2 3 4 5…39Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039758.01.T01	AT4G12560	29.023	348	180	16	13	344	8	304	6.34e-18	85.9
MsG0780039758.01.T01	AT4G12560	29.023	348	180	16	13	344	8	304	6.34e-18	85.9
MsG0780039758.01.T01	AT4G12560	29.023	348	180	16	13	344	8	304	6.34e-18	85.9
MsG0780039758.01.T01	AT3G06240	24.496	347	208	12	13	338	40	353	3.02e-16	80.9
MsG0780039758.01.T01	AT3G23880	27.114	343	179	12	13	343	18	301	1.21e-14	75.5
MsG0780039758.01.T01	AT1G47340	25.612	449	255	21	2	433	30	416	2.73e-12	68.9
MsG0780039758.01.T01	AT1G47340	25.799	438	246	21	13	433	10	385	6.96e-12	67.4
MsG0780039758.01.T01	AT1G47340	25.799	438	246	21	13	433	10	385	6.96e-12	67.4

Showing 1 to 8 of 8 entries

Previous1Next

Find 94 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGATGCTCCCGCATTGT+TGG	0.508708	7:+68685829	MsG0780039758.01.T01:CDS
AAATATTGGAGATGTTATCC+TGG	0.546600	7:-68685938	None:intergenic
AAGTGACAATGAATATGAGG+AGG	0.664584	7:+68685717	MsG0780039758.01.T01:CDS
AATAGATTTCACTGGAAGAA+CGG	0.561123	7:-68685539	None:intergenic
AATCTCAGAATAGATTTCAC+TGG	0.492269	7:-68685547	None:intergenic
AATGGATTGATCTGTTTGGC+TGG	0.501930	7:+68685859	MsG0780039758.01.T01:CDS
AATGTGAGAATTCTAGGTTT+TGG	0.374410	7:+68686105	MsG0780039758.01.T01:CDS
AATTTGGGGTTGAAGATTCT+TGG	0.283827	7:+68686472	MsG0780039758.01.T01:CDS
ACAACCAACTATAGGTGTGT+TGG	0.554238	7:+68686386	MsG0780039758.01.T01:CDS
ACACCATCAGACACACCAGT+TGG	0.607062	7:-68686192	None:intergenic

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGGAGATGTTATCC+TGG	-	Chr7:68685941-68685960	None:intergenic	30.0%
AATAGATTTCACTGGAAGAA+CGG	-	Chr7:68685542-68685561	None:intergenic	30.0%
AATCTCAGAATAGATTTCAC+TGG	-	Chr7:68685550-68685569	None:intergenic	30.0%
AGGATAACATCTCCAATATT+TGG	+	Chr7:68685940-68685959	MsG0780039758.01.T01:CDS	30.0%
ATGGCATATGAAGAAATTTG+GGG	+	Chr7:68686458-68686477	MsG0780039758.01.T01:CDS	30.0%
ATTAGATAGCAGTCAAGAAA+TGG	+	Chr7:68686617-68686636	MsG0780039758.01.T01:CDS	30.0%
ATTAGTAGGAAATGTGGATT+TGG	-	Chr7:68685655-68685674	None:intergenic	30.0%
ATTGGAGAGATAATACAGTA+AGG	+	Chr7:68686655-68686674	MsG0780039758.01.T01:CDS	30.0%
GGATAACATCTCCAATATTT+GGG	+	Chr7:68685941-68685960	MsG0780039758.01.T01:CDS	30.0%
GGCAATTACAAATTCTACTT+TGG	+	Chr7:68686015-68686034	MsG0780039758.01.T01:CDS	30.0%

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	68685484	68686797	68685484	ID=MsG0780039758.01;Name=MsG0780039758.01
Chr7	mRNA	68685484	68686797	68685484	ID=MsG0780039758.01.T01;Parent=MsG0780039758.01;Name=MsG0780039758.01.T01;_AED=0.34;_eAED=0.34;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|437
Chr7	exon	68685484	68686797	68685484	ID=MsG0780039758.01.T01:exon:12063;Parent=MsG0780039758.01.T01
Chr7	CDS	68685484	68686797	68685484	ID=MsG0780039758.01.T01:cds;Parent=MsG0780039758.01.T01

Gene Sequence

>MsG0780039758.01.T01

ATGACTCTGTTGCCGGCTGTGTTCTTCTCCGACGGTCTCGTTGGCGAGATCTTCTCCGTTCTTCCAGTGAAATCTATTCTGAGATTCAGGTGCCTCAGCAAGTCTTGCGACACTCTCATTTCGGATCCCACCTTCGTGAAATTACAGCTCAAAAGAAGATCAGCAACACCAAATCCACATTTCCTACTAATCATCGATCAGAAACACGAAATCAGAGGTGAGTCCCCCTACGGAAGTGACAATGAATATGAGGAGGATTCTGCTGTCATCCCATACTCCATACGCTGTTTAATCGACAATCCGTCATTCACTATTTCCATGGATCCTTACTATACGGTGAAAGACAAAGGATGCTCCCGCATTGTTGGTTCCTGCAATGGATTGATCTGTTTGGCTGGTAGTTCCTTCACCTGTGAATATATAGAGTACTGGCTTCGTTTATGGAACCCAGCCACCAGGATAACATCTCCAATATTTGGGTATTTTCGTGAAAAGTGCAATTCTCTAGAAGATGTTCCTTTCTTGTTTGATGGCAATTACAAATTCTACTTTGGTTATGATGATTCTACTGACACTTATAAGGTTTTGGCCGCGCGTTACAATCGACGTGAACTGAGAAGCAATGTGAGAATTCTAGGTTTTGGCGATAACAATTGGAGACATATTGAAAGTTTCCCTGTTGATCCTATTTCTTTGGACTATGATGGTCCAACTGGTGTGTCTGATGGTGTGTATTTCAGGAGTACTCTTAACTGGCTGGCTATTCAAAATCAATTACAATATATTCTCAGCACTATTAAAGATATCACTGTTGAGAATTTTGTTATTGTTTCATTTGATTTGAGAACTGAGACATACAATCGGTACTTCTTGCCTCGTGATTTTGATGAGGTGCCACCTGCACAACCAACTATAGGTGTGTTGGGCGACTGTCTTTGTTTTTCTTATTGTTACAAGGAAACTGATTTCGTTATATGGCATATGAAGAAATTTGGGGTTGAAGATTCTTGGACTCCATTCCTTAAAATTAGTTATCAAAATCTTCAAATTGATTATGACTATAATTTTGATTTCCTAAAGTATCATTTTAACTTGCAATCCTTGTTTCTTTCTGAGGATGGTGATACACTGATATTAGATAGCAGTCAAGAAATGGAAGCAATTCTGTATAATTGGAGAGATAATACAGTAAGGCGAACAGAAGCTTCTGTAAGTAGTTCTATTATCAATCATAGAACTAATGTTAGAACAAGCACTAGTATATCTTGGTACATGGCCATGGATTATGTTGAAAGCTTAGTTTCGATTTGTTGA

Protein sequence

>MsG0780039758.01.T01

MTLLPAVFFSDGLVGEIFSVLPVKSILRFRCLSKSCDTLISDPTFVKLQLKRRSATPNPHFLLIIDQKHEIRGESPYGSDNEYEEDSAVIPYSIRCLIDNPSFTISMDPYYTVKDKGCSRIVGSCNGLICLAGSSFTCEYIEYWLRLWNPATRITSPIFGYFREKCNSLEDVPFLFDGNYKFYFGYDDSTDTYKVLAARYNRRELRSNVRILGFGDNNWRHIESFPVDPISLDYDGPTGVSDGVYFRSTLNWLAIQNQLQYILSTIKDITVENFVIVSFDLRTETYNRYFLPRDFDEVPPAQPTIGVLGDCLCFSYCYKETDFVIWHMKKFGVEDSWTPFLKISYQNLQIDYDYNFDFLKYHFNLQSLFLSEDGDTLILDSSQEMEAILYNWRDNTVRRTEASVSSSIINHRTNVRTSTSISWYMAMDYVESLVSIC*