AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043152.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043152.01.T01 MTR_8g030660 88.108 185 21 1 1 185 85 268 1.30e-117 339
MsG0880043152.01.T01 MTR_6g055210 57.338 293 92 4 1 289 83 346 1.36e-104 312
MsG0880043152.01.T01 MTR_7g066080 54.027 298 94 8 1 290 77 339 7.36e-95 288
MsG0880043152.01.T01 MTR_7g066060 51.701 294 107 6 1 290 84 346 2.23e-87 270
MsG0880043152.01.T01 MTR_3g080370 50.333 300 112 5 1 293 81 350 1.47e-85 264
MsG0880043152.01.T01 MTR_5g056020 50.492 305 104 9 1 287 78 353 4.13e-85 264
MsG0880043152.01.T01 MTR_6g016285 48.161 299 118 5 1 292 81 349 2.55e-84 260
MsG0880043152.01.T01 MTR_6g086920 46.959 296 122 6 4 293 135 401 4.09e-78 246
MsG0880043152.01.T01 MTR_0707s0020 47.241 290 118 6 4 287 123 383 4.62e-78 244
MsG0880043152.01.T01 MTR_7g066100 44.816 299 118 7 1 287 72 335 2.36e-75 236
MsG0880043152.01.T01 MTR_8g030630 62.712 177 43 2 111 287 245 398 5.09e-68 218
MsG0880043152.01.T01 MTR_8g030630 80.769 130 25 0 164 293 72 201 7.24e-68 218
MsG0880043152.01.T01 MTR_7g066000 43.243 296 117 8 4 288 88 343 5.69e-66 212
MsG0880043152.01.T01 MTR_6g092560 42.484 306 129 8 1 298 73 339 6.87e-63 205
MsG0880043152.01.T01 MTR_7g066030 42.373 295 119 7 7 287 87 344 1.34e-62 203
MsG0880043152.01.T01 MTR_7g070830 41.017 295 137 6 4 283 83 355 2.40e-62 203
MsG0880043152.01.T01 MTR_7g070880 41.017 295 137 6 4 283 83 355 4.77e-62 202
MsG0880043152.01.T01 MTR_8g066440 41.197 284 133 7 6 283 88 343 7.51e-61 199
MsG0880043152.01.T01 MTR_3g464470 42.268 291 114 8 7 290 75 318 6.06e-60 196
MsG0880043152.01.T01 MTR_6g088385 42.045 264 105 6 42 287 25 258 2.01e-59 192
MsG0880043152.01.T01 MTR_7g078900 41.754 285 129 8 3 284 90 340 2.01e-58 193
MsG0880043152.01.T01 MTR_4g031020 43.346 263 107 6 37 290 137 366 4.43e-58 192
MsG0880043152.01.T01 MTR_3g464500 43.509 285 104 10 7 281 95 332 3.48e-57 189
MsG0880043152.01.T01 MTR_4g030830 41.404 285 121 8 4 281 75 320 4.71e-57 189
MsG0880043152.01.T01 MTR_7g078840 43.295 261 109 6 36 285 119 351 6.30e-57 189
MsG0880043152.01.T01 MTR_1g088120 39.863 291 126 10 8 285 79 333 1.95e-56 187
MsG0880043152.01.T01 MTR_4g030980 42.105 266 106 6 37 290 137 366 3.62e-56 187
MsG0880043152.01.T01 MTR_7g055987 40.141 284 117 8 4 284 84 317 7.27e-55 182
MsG0880043152.01.T01 MTR_4g013185 38.384 297 132 8 3 286 88 346 7.68e-55 184
MsG0880043152.01.T01 MTR_4g024890 40.925 281 120 7 6 282 76 314 1.08e-54 182
MsG0880043152.01.T01 MTR_4g019990 42.254 284 117 8 6 281 76 320 1.57e-54 182
MsG0880043152.01.T01 MTR_7g056003 40.614 293 118 8 3 284 82 329 1.94e-54 182
MsG0880043152.01.T01 MTR_2g043410 41.538 260 95 8 32 284 128 337 5.35e-54 181
MsG0880043152.01.T01 MTR_7g056290 38.158 304 117 10 3 284 88 342 4.83e-53 179
MsG0880043152.01.T01 MTR_2g043400 37.874 301 116 9 4 284 89 338 5.47e-53 179
MsG0880043152.01.T01 MTR_4g013175 39.456 294 121 10 8 285 93 345 7.82e-53 178
MsG0880043152.01.T01 MTR_7g055870 38.816 304 131 7 8 284 76 351 1.98e-52 177
MsG0880043152.01.T01 MTR_7g445750 40.727 275 116 7 8 268 90 331 2.07e-52 175
MsG0880043152.01.T01 MTR_7g055930 38.462 299 139 7 8 284 76 351 9.80e-52 176
MsG0880043152.01.T01 MTR_7g057270 38.966 290 131 10 8 287 95 348 3.30e-51 174
MsG0880043152.01.T01 MTR_7g078860 41.115 287 119 11 2 284 86 326 4.94e-51 173
MsG0880043152.01.T01 MTR_7g077070 40.753 292 123 11 3 279 87 343 2.26e-50 172
MsG0880043152.01.T01 MTR_4g013180 40.625 256 111 6 37 284 102 324 2.67e-50 173
MsG0880043152.01.T01 MTR_7g056390 40.000 265 100 9 30 284 123 338 6.43e-50 171
MsG0880043152.01.T01 MTR_7g055977 38.947 285 120 7 6 282 72 310 2.21e-49 168
MsG0880043152.01.T01 MTR_7g113500 38.911 257 117 8 34 283 89 312 2.89e-49 168
MsG0880043152.01.T01 MTR_1g442850 39.362 282 136 7 6 286 67 314 3.77e-49 167
MsG0880043152.01.T01 MTR_7g056503 36.644 292 141 7 2 285 79 334 3.80e-49 168
MsG0880043152.01.T01 MTR_7g078040 40.550 291 136 9 12 297 99 357 4.97e-49 169
MsG0880043152.01.T01 MTR_2g047200 37.631 287 131 8 4 282 84 330 9.80e-49 167
MsG0880043152.01.T01 MTR_7g061090 38.754 289 129 7 4 284 94 342 1.62e-48 167
MsG0880043152.01.T01 MTR_5g058620 49.451 182 75 6 114 290 31 200 1.67e-48 163
MsG0880043152.01.T01 MTR_1g058870 49.451 182 75 6 114 290 31 200 1.67e-48 163
MsG0880043152.01.T01 MTR_4g008790 37.847 288 116 8 8 286 135 368 1.77e-48 168
MsG0880043152.01.T01 MTR_3g437520 36.964 303 125 11 6 284 93 353 1.96e-48 168
MsG0880043152.01.T01 MTR_6g065510 42.562 242 95 8 60 296 73 275 3.26e-48 164
MsG0880043152.01.T01 MTR_7g091630 39.792 289 129 11 4 283 97 349 4.78e-48 166
MsG0880043152.01.T01 MTR_2g010900 35.517 290 144 9 4 283 44 300 4.85e-48 165
MsG0880043152.01.T01 MTR_7g060940 37.457 291 124 7 4 283 86 329 1.04e-47 164
MsG0880043152.01.T01 MTR_7g061050 40.283 283 123 8 6 283 76 317 3.02e-47 163
MsG0880043152.01.T01 MTR_4g033495 40.637 251 112 7 37 284 123 339 5.02e-47 164
MsG0880043152.01.T01 MTR_7g061060 38.754 289 127 10 3 284 76 321 9.33e-47 162
MsG0880043152.01.T01 MTR_4g030090 37.586 290 127 10 4 282 78 324 1.05e-46 162
MsG0880043152.01.T01 MTR_7g009265 37.037 297 146 6 7 298 1 261 1.16e-46 159
MsG0880043152.01.T01 MTR_6g017295 36.879 282 141 4 5 282 9 257 1.17e-46 164
MsG0880043152.01.T01 MTR_1g047490 39.852 271 105 7 4 270 81 297 2.19e-46 159
MsG0880043152.01.T01 MTR_7g056710 38.542 288 131 8 2 286 76 320 3.81e-46 160
MsG0880043152.01.T01 MTR_7g055830 41.803 244 104 7 53 284 66 283 4.54e-46 159
MsG0880043152.01.T01 MTR_3g072470 37.209 258 107 7 35 284 128 338 4.69e-46 160
MsG0880043152.01.T01 MTR_7g056260 39.161 286 114 10 3 279 83 317 5.59e-46 157
MsG0880043152.01.T01 MTR_2g461450 38.628 277 117 8 4 279 73 297 7.83e-46 158
MsG0880043152.01.T01 MTR_2g010920 37.500 296 140 13 2 283 91 355 9.11e-46 160
MsG0880043152.01.T01 MTR_4g034860 38.028 284 140 8 6 284 92 344 9.69e-46 159
MsG0880043152.01.T01 MTR_5g069760 36.986 292 126 9 4 286 67 309 1.31e-45 158
MsG0880043152.01.T01 MTR_7g028660 36.364 286 144 8 2 283 69 320 2.71e-45 157
MsG0880043152.01.T01 MTR_2g010950 36.268 284 140 9 8 283 85 335 3.84e-45 158
MsG0880043152.01.T01 MTR_7g077910 37.542 301 117 10 3 284 6 254 4.19e-45 156
MsG0880043152.01.T01 MTR_7g060960 39.130 253 105 7 34 285 102 306 4.42e-45 157
MsG0880043152.01.T01 MTR_7g062060 36.054 294 140 9 1 284 84 339 5.62e-45 157
MsG0880043152.01.T01 MTR_7g079160 35.922 309 139 11 8 295 91 361 6.25e-45 159
MsG0880043152.01.T01 MTR_0464s0020 34.106 302 132 9 6 284 93 350 6.57e-45 157
MsG0880043152.01.T01 MTR_7g077970 39.209 278 128 9 11 282 89 331 1.59e-44 156
MsG0880043152.01.T01 MTR_7g091640 36.918 279 133 7 12 283 106 348 3.62e-44 154
MsG0880043152.01.T01 MTR_7g056173 47.778 180 74 3 115 284 26 195 9.17e-44 152
MsG0880043152.01.T01 MTR_0242s0060 38.062 289 136 10 3 286 83 333 1.10e-43 154
MsG0880043152.01.T01 MTR_0242s0040 38.062 289 136 10 3 286 83 333 1.10e-43 154
MsG0880043152.01.T01 MTR_7g055953 44.693 179 79 3 110 284 84 246 4.85e-43 150
MsG0880043152.01.T01 MTR_7g066010 35.906 298 108 9 4 287 84 312 6.64e-43 151
MsG0880043152.01.T01 MTR_2g047892 36.905 252 110 9 38 281 119 329 5.12e-42 149
MsG0880043152.01.T01 MTR_4g030790 37.795 254 110 9 36 282 75 287 1.05e-41 147
MsG0880043152.01.T01 MTR_7g077990 35.570 298 114 9 3 284 88 323 1.41e-41 148
MsG0880043152.01.T01 MTR_6g017280 34.276 283 155 5 1 283 67 318 1.92e-41 147
MsG0880043152.01.T01 MTR_4g129190 34.237 295 141 9 4 286 68 321 2.41e-41 147
MsG0880043152.01.T01 MTR_5g069930 35.117 299 131 12 1 286 66 314 3.45e-41 147
MsG0880043152.01.T01 MTR_7g445890 39.194 273 118 8 21 284 77 310 3.73e-41 147
MsG0880043152.01.T01 MTR_0128s0010 34.752 282 137 11 8 283 89 329 4.95e-41 147
MsG0880043152.01.T01 MTR_7g052150 37.226 274 121 7 10 278 93 320 9.44e-41 146
MsG0880043152.01.T01 MTR_5g068040 33.333 294 135 10 7 295 84 321 2.02e-40 145
MsG0880043152.01.T01 MTR_4g129160 36.545 301 143 12 3 294 84 345 3.57e-40 144
MsG0880043152.01.T01 MTR_7g034310 45.714 175 81 3 114 288 15 175 5.21e-40 139
MsG0880043152.01.T01 MTR_7g070937 52.593 135 55 2 113 241 9 140 6.04e-40 137
MsG0880043152.01.T01 MTR_7g056200 51.034 145 61 3 147 282 169 312 8.55e-40 143
MsG0880043152.01.T01 MTR_0649s0020 34.138 290 141 8 3 282 72 321 1.29e-39 143
MsG0880043152.01.T01 MTR_1g112010 35.986 289 113 11 2 284 40 262 1.62e-39 141
MsG0880043152.01.T01 MTR_2g047895 33.106 293 144 8 13 292 11 264 6.22e-39 140
MsG0880043152.01.T01 MTR_7g050520 37.600 250 106 9 32 278 115 317 8.12e-39 140
MsG0880043152.01.T01 MTR_7g056717 38.281 256 110 7 37 288 116 327 1.17e-37 137
MsG0880043152.01.T01 MTR_7g050480 38.800 250 103 9 32 278 115 317 1.20e-37 137
MsG0880043152.01.T01 MTR_3g013470 34.752 282 108 8 12 284 82 296 5.63e-37 135
MsG0880043152.01.T01 MTR_2g017720 46.203 158 72 4 126 282 89 234 1.23e-36 135
MsG0880043152.01.T01 MTR_7g056737 38.132 257 109 9 37 288 116 327 1.35e-36 135
MsG0880043152.01.T01 MTR_0128s0020 33.557 298 144 10 8 298 90 340 1.56e-36 135
MsG0880043152.01.T01 MTR_4g006350 31.142 289 153 6 6 288 564 812 6.95e-36 137
MsG0880043152.01.T01 MTR_7g070900 42.458 179 64 3 111 283 232 377 7.98e-36 134
MsG0880043152.01.T01 MTR_7g056023 35.185 270 119 8 2 261 55 278 8.52e-36 130
MsG0880043152.01.T01 MTR_1g029650 33.684 285 132 8 8 284 84 319 9.11e-36 133
MsG0880043152.01.T01 MTR_7g056570 35.357 280 138 8 9 286 83 321 9.18e-36 133
MsG0880043152.01.T01 MTR_4g030760 34.386 285 114 7 4 281 139 357 1.14e-35 133
MsG0880043152.01.T01 MTR_4g020000 45.238 168 88 3 115 281 112 276 1.14e-35 132
MsG0880043152.01.T01 MTR_6g017305 36.325 234 111 5 50 279 4 203 1.43e-35 129
MsG0880043152.01.T01 MTR_0128s0070 32.323 297 148 10 8 298 94 343 1.97e-35 132
MsG0880043152.01.T01 MTR_1g071010 34.589 292 129 11 9 285 82 326 3.47e-35 131
MsG0880043152.01.T01 MTR_5g096710 35.315 286 127 12 8 282 91 329 7.03e-35 130
MsG0880043152.01.T01 MTR_5g043160 35.185 270 125 11 33 290 161 392 3.77e-34 129
MsG0880043152.01.T01 MTR_7g056820 30.986 284 151 7 2 284 75 314 4.09e-34 128
MsG0880043152.01.T01 MTR_7g066040 37.383 214 102 5 37 242 25 214 6.24e-34 124
MsG0880043152.01.T01 MTR_4g030110 38.492 252 89 7 37 281 130 322 8.98e-34 127
MsG0880043152.01.T01 MTR_7g062100 35.336 283 130 10 8 282 91 328 1.87e-33 126
MsG0880043152.01.T01 MTR_0097s0030 33.603 247 121 5 36 279 107 313 2.80e-33 126
MsG0880043152.01.T01 MTR_2g047240 33.603 247 121 5 36 279 107 313 2.80e-33 126
MsG0880043152.01.T01 MTR_4g011660 31.333 300 150 8 8 288 91 353 2.97e-33 126
MsG0880043152.01.T01 MTR_7g078960 40.000 240 81 10 55 281 14 203 3.47e-33 123
MsG0880043152.01.T01 MTR_1g015730 32.881 295 127 9 8 296 90 319 8.14e-33 125
MsG0880043152.01.T01 MTR_5g011350 34.615 260 115 10 3 258 38 246 1.19e-32 121
MsG0880043152.01.T01 MTR_4g037465 30.796 289 157 8 3 288 84 332 2.10e-32 124
MsG0880043152.01.T01 MTR_4g128320 37.447 235 84 8 55 284 37 213 2.14e-32 121
MsG0880043152.01.T01 MTR_7g070440 34.559 272 135 8 19 284 78 312 2.60e-32 123
MsG0880043152.01.T01 MTR_2g006360 43.429 175 67 5 116 287 156 301 2.64e-32 123
MsG0880043152.01.T01 MTR_6g081280 39.884 173 80 4 115 282 17 170 6.80e-32 119
MsG0880043152.01.T01 MTR_7g061010 34.632 231 106 4 55 283 136 323 7.72e-32 122
MsG0880043152.01.T01 MTR_2g047878 31.734 271 128 6 15 283 88 303 3.78e-31 120
MsG0880043152.01.T01 MTR_7g052670 29.870 308 163 10 5 287 87 366 5.61e-31 120
MsG0880043152.01.T01 MTR_7g066850 33.103 290 138 10 4 285 89 330 6.52e-31 120
MsG0880043152.01.T01 MTR_7g078940 35.714 252 118 9 11 251 125 343 1.19e-30 119
MsG0880043152.01.T01 MTR_7g056760 33.333 285 144 10 9 285 95 341 2.16e-30 118
MsG0880043152.01.T01 MTR_7g022600 30.769 299 148 12 8 285 94 354 1.68e-29 116
MsG0880043152.01.T01 MTR_7g035295 30.662 287 131 8 5 284 81 306 2.00e-29 115
MsG0880043152.01.T01 MTR_5g069950 34.513 226 88 8 59 282 33 200 1.88e-28 109
MsG0880043152.01.T01 MTR_7g091610 41.176 136 76 1 152 283 42 177 2.84e-28 109
MsG0880043152.01.T01 MTR_7g061940 36.559 186 93 5 117 298 78 242 3.73e-28 109
MsG0880043152.01.T01 MTR_2g027820 53.271 107 49 1 172 278 121 226 4.32e-28 110
MsG0880043152.01.T01 MTR_2g437110 30.872 298 141 11 5 287 87 334 1.13e-27 112
MsG0880043152.01.T01 MTR_0128s0110 36.957 138 86 1 150 287 4 140 4.77e-27 105
MsG0880043152.01.T01 MTR_2g010935 36.782 174 73 4 115 282 37 179 4.77e-27 106
MsG0880043152.01.T01 MTR_1g015740 35.749 207 85 6 93 298 103 262 5.55e-27 107
MsG0880043152.01.T01 MTR_7g066840 30.743 296 130 11 8 284 94 333 2.00e-26 107
MsG0880043152.01.T01 MTR_7g056170 31.068 309 139 11 3 284 133 394 2.59e-25 105
MsG0880043152.01.T01 MTR_7g078880 41.096 146 59 4 146 284 104 229 4.64e-24 100
MsG0880043152.01.T01 MTR_6g042600 56.250 80 35 0 205 284 175 254 1.45e-23 99.8
MsG0880043152.01.T01 MTR_8g101940 32.765 293 125 13 3 282 63 296 1.83e-23 99.0
MsG0880043152.01.T01 MTR_4g024870 35.398 226 99 9 6 223 111 297 2.79e-23 99.0
MsG0880043152.01.T01 MTR_7g056797 30.634 284 145 11 9 282 95 336 3.52e-23 98.6
MsG0880043152.01.T01 MTR_2g021150 30.357 280 137 11 4 279 81 306 1.19e-22 96.7
MsG0880043152.01.T01 MTR_2g060555 32.018 228 104 7 59 282 45 225 4.86e-22 93.6
MsG0880043152.01.T01 MTR_4g063955 38.571 140 59 3 1 140 88 200 2.33e-21 91.7
MsG0880043152.01.T01 MTR_7g445580 60.938 64 25 0 221 284 41 104 9.73e-21 86.7
MsG0880043152.01.T01 MTR_7g022670 35.862 145 82 3 146 285 145 283 1.65e-20 90.5
MsG0880043152.01.T01 MTR_0267s0050 29.123 285 165 8 9 288 73 325 1.99e-19 87.8
MsG0880043152.01.T01 MTR_7g006360 30.196 255 82 7 32 286 56 214 2.74e-19 86.3
MsG0880043152.01.T01 MTR_1g097560 28.315 279 127 10 4 277 100 310 7.56e-19 86.3
MsG0880043152.01.T01 MTR_3g013950 29.167 288 163 9 9 288 73 327 2.06e-18 85.1
MsG0880043152.01.T01 MTR_6g017270 32.353 170 86 4 5 174 74 214 2.68e-18 84.3
MsG0880043152.01.T01 MTR_6g017270 42.056 107 39 5 197 282 161 265 7.10e-12 65.5
MsG0880043152.01.T01 MTR_2g029990 30.242 248 113 12 37 279 148 340 1.63e-17 82.4
MsG0880043152.01.T01 MTR_4g061340 29.180 305 145 14 4 297 87 331 1.73e-17 82.0
MsG0880043152.01.T01 MTR_4g031770 35.088 171 86 8 117 279 138 291 2.07e-17 82.0
MsG0880043152.01.T01 MTR_7g013590 29.084 251 132 9 37 285 126 332 5.68e-17 80.9
MsG0880043152.01.T01 MTR_7g060930 52.055 73 34 1 187 259 1 72 5.82e-17 74.7
MsG0880043152.01.T01 MTR_1g097330 26.027 292 160 10 1 290 73 310 2.01e-16 79.3
MsG0880043152.01.T01 MTR_2g046920 26.429 280 148 9 4 282 90 312 2.50e-16 79.0
MsG0880043152.01.T01 MTR_3g011020 36.047 172 81 8 116 279 157 307 2.56e-16 79.0
MsG0880043152.01.T01 MTR_2g021155 33.333 177 101 5 104 279 163 323 3.80e-16 79.3
MsG0880043152.01.T01 MTR_2g021155 30.319 188 113 7 94 279 717 888 2.72e-12 67.8
MsG0880043152.01.T01 MTR_2g021190 36.686 169 83 9 116 279 161 310 4.51e-16 78.2
MsG0880043152.01.T01 MTR_3g013770 28.926 242 121 8 37 277 132 323 7.07e-16 77.8
MsG0880043152.01.T01 MTR_3g007330 28.000 250 130 8 31 279 129 329 3.53e-15 75.5
MsG0880043152.01.T01 MTR_7g058630 40.659 91 52 1 197 285 23 113 8.21e-15 71.6
MsG0880043152.01.T01 MTR_0044s0300 30.041 243 112 10 38 279 136 321 1.50e-14 73.6
MsG0880043152.01.T01 MTR_3g007410 28.854 253 128 9 38 287 144 347 1.52e-14 73.9
MsG0880043152.01.T01 MTR_3g007360 28.854 253 128 9 38 287 144 347 1.66e-14 73.6
MsG0880043152.01.T01 MTR_5g022420 24.306 288 150 9 4 289 91 312 1.85e-14 73.6
MsG0880043152.01.T01 MTR_3g009240 29.297 256 119 14 31 279 118 318 2.00e-14 73.2
MsG0880043152.01.T01 MTR_4g133170 24.528 265 161 6 13 277 64 289 4.28e-14 72.4
MsG0880043152.01.T01 MTR_3g014570 27.642 246 128 9 36 279 120 317 6.33e-14 72.0
MsG0880043152.01.T01 MTR_3g006530 28.346 254 116 10 38 287 145 336 8.84e-14 71.6
MsG0880043152.01.T01 MTR_2g028130 27.237 257 142 10 32 280 99 318 1.31e-13 70.9
MsG0880043152.01.T01 MTR_1g054575 24.590 305 166 10 2 298 112 360 1.97e-13 70.9
MsG0880043152.01.T01 MTR_3g014540 27.138 269 146 11 13 279 97 317 2.19e-13 70.1
MsG0880043152.01.T01 MTR_2g046800 26.718 262 131 8 37 294 140 344 4.45e-13 69.3
MsG0880043152.01.T01 MTR_3g055000 42.857 77 38 2 213 288 1 72 7.12e-13 64.7
MsG0880043152.01.T01 MTR_7g089830 39.815 108 46 4 177 284 8 96 8.33e-13 65.1
MsG0880043152.01.T01 MTR_4g070550 27.843 255 142 13 32 277 94 315 1.20e-12 68.2
MsG0880043152.01.T01 MTR_1g055375 30.636 173 99 7 110 279 144 298 1.59e-12 67.8
MsG0880043152.01.T01 MTR_2g078870 33.136 169 84 8 115 281 99 240 1.67e-12 67.0
MsG0880043152.01.T01 MTR_3g007270 32.530 166 89 6 116 279 201 345 1.96e-12 67.4
MsG0880043152.01.T01 MTR_7g407070 32.544 169 93 7 118 279 185 339 2.76e-12 67.0
MsG0880043152.01.T01 MTR_2g028140 26.692 266 145 13 32 284 100 328 3.10e-12 67.0
MsG0880043152.01.T01 MTR_1g056280 33.333 162 83 8 126 279 3 147 3.59e-12 64.7
MsG0880043152.01.T01 MTR_3g024110 31.515 165 85 6 116 279 242 379 4.20e-12 66.6
MsG0880043152.01.T01 MTR_2g078900 32.121 165 87 5 116 279 175 315 5.98e-12 65.9
MsG0880043152.01.T01 MTR_1g054725 28.030 264 125 16 27 279 103 312 6.05e-12 65.9
MsG0880043152.01.T01 MTR_4g006840 29.798 198 73 7 34 227 89 224 7.24e-12 64.3
MsG0880043152.01.T01 MTR_3g010390 30.178 169 101 5 114 277 179 335 7.39e-12 65.9
MsG0880043152.01.T01 MTR_4g024910 38.542 96 42 2 187 282 117 195 1.84e-11 64.3
MsG0880043152.01.T01 MTR_3g030310 29.084 251 117 11 38 287 126 316 2.17e-11 64.3
MsG0880043152.01.T01 MTR_6g004660 30.357 168 97 6 116 280 167 317 2.46e-11 63.9
MsG0880043152.01.T01 MTR_3g036335 28.629 248 113 11 37 279 140 328 2.78e-11 63.9
MsG0880043152.01.T01 MTR_3g009300 25.203 246 127 9 38 279 98 290 3.60e-11 63.5
MsG0880043152.01.T01 MTR_3g055070 46.552 58 30 1 213 269 1 58 6.59e-11 60.1
MsG0880043152.01.T01 MTR_5g011200 33.136 169 89 9 112 277 158 305 7.16e-11 62.8
MsG0880043152.01.T01 MTR_2g078850 33.140 172 79 8 116 279 172 315 7.66e-11 62.4
MsG0880043152.01.T01 MTR_1g068875 23.904 251 148 8 32 280 84 293 9.31e-11 62.4
MsG0880043152.01.T01 MTR_2g025960 24.590 244 150 8 37 277 3 215 1.00e-10 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTATTGGTTTCGTATA+TGG 0.175253 8:-19820282 MsG0880043152.01.T01:CDS
GCCAACTCTTCATGTTCTTT+TGG 0.189866 8:-19819744 MsG0880043152.01.T01:CDS
AGGAAACTCAATTTGTTATA+TGG 0.214740 8:-19819694 MsG0880043152.01.T01:CDS
CGCGGTTTGAGGTTCAATTT+TGG 0.214772 8:-19820196 MsG0880043152.01.T01:CDS
ACAAGGAGTATCATAATTAT+TGG 0.230600 8:-19820294 MsG0880043152.01.T01:CDS
ATTTGAGTGGCACTATTTAC+TGG 0.302466 8:-19819916 MsG0880043152.01.T01:CDS
TTCGATCTTGTTCCCGTAGC+AGG 0.306329 8:+19820256 None:intergenic
CTTATATCTCCATTTAATAA+TGG 0.310793 8:-19819944 MsG0880043152.01.T01:CDS
AAATACACACCATTATTAAA+TGG 0.317249 8:+19819935 None:intergenic
AATCAGTCCATGACTGTTTC+CGG 0.327752 8:-19820409 MsG0880043152.01.T01:CDS
AGACTGGATTTCAAGAATCT+TGG 0.338390 8:-19819661 MsG0880043152.01.T01:CDS
AACCGTAGGCGGTCTCTATT+AGG 0.340200 8:-19820139 MsG0880043152.01.T01:CDS
GGTTGTTTGAAGTTCACTTT+TGG 0.353247 8:-19820118 MsG0880043152.01.T01:CDS
ATATCCCCATAACCATAAAA+AGG 0.355383 8:+19819869 None:intergenic
GGAACAAGATCGAAAGCATT+AGG 0.367153 8:-19820247 MsG0880043152.01.T01:CDS
TCAGTTTGAGCGATGATTGT+TGG 0.388669 8:-19819997 MsG0880043152.01.T01:CDS
AATGCATAACAATCCGTTGC+AGG 0.403161 8:+19820333 None:intergenic
GGAGATGAAGAAAACAAATA+TGG 0.419686 8:-19820046 MsG0880043152.01.T01:CDS
AACGAGTGACAGGGAGAGAT+TGG 0.429340 8:+19820440 None:intergenic
ACCTTCAGCTACGCGGTTTG+AGG 0.431436 8:-19820207 MsG0880043152.01.T01:CDS
GAACAAGATCGAAAGCATTA+GGG 0.475367 8:-19820246 MsG0880043152.01.T01:CDS
TTCTCGAGTAAACGAGTGAC+AGG 0.485778 8:+19820430 None:intergenic
ATGCCTCAGTTGAAAGATCA+AGG 0.489678 8:+19819816 None:intergenic
TGAAATGCATAACCTTCTGT+TGG 0.490900 8:-19819606 MsG0880043152.01.T01:CDS
CTCCCTTGATCTTTCAACTG+AGG 0.492108 8:-19819819 MsG0880043152.01.T01:CDS
TGAAGAGTTGGCTGAAAGCA+TGG 0.501831 8:+19819755 None:intergenic
TCGATCTTGTTCCCGTAGCA+GGG 0.512052 8:+19820257 None:intergenic
AAGAAAACAAATATGGTCCA+TGG 0.524706 8:-19820039 MsG0880043152.01.T01:CDS
TCGTATATGGAACCCTGCTA+CGG 0.525575 8:-19820269 MsG0880043152.01.T01:CDS
TTATTAAATGGAGATATAAG+AGG 0.525794 8:+19819947 None:intergenic
CGTATATGGAACCCTGCTAC+GGG 0.533046 8:-19820268 MsG0880043152.01.T01:CDS
AAGGTTGTTAATTCCTGCAA+CGG 0.541922 8:-19820346 MsG0880043152.01.T01:CDS
ACCATCGTGGCAAAAGTCAC+CGG 0.542022 8:+19820390 None:intergenic
TCCAAAAGAACATGAAGAGT+TGG 0.544954 8:+19819743 None:intergenic
ATATGGCAAATGAAAGAGAC+TGG 0.545233 8:-19819677 MsG0880043152.01.T01:CDS
GGAGATATAAGAGGAATCAA+AGG 0.545681 8:+19819956 None:intergenic
ATATGGTCCATGGAGAAGTC+AGG 0.546790 8:-19820029 MsG0880043152.01.T01:CDS
ATCGTGGAGTTTCGTGCCAA+AGG 0.558204 8:-19820067 MsG0880043152.01.T01:CDS
GCTGCCTTCTGGCTTTGATG+AGG 0.562636 8:-19819780 MsG0880043152.01.T01:CDS
ACCTCAAACCGCGTAGCTGA+AGG 0.569824 8:+19820206 None:intergenic
AATAATGGTGTGTATTTGAG+TGG 0.574137 8:-19819929 MsG0880043152.01.T01:CDS
AGAGATTGGACAGTCCGCAT+AGG 0.575122 8:+19820454 None:intergenic
AAAGTCACCGGAAACAGTCA+TGG 0.581323 8:+19820402 None:intergenic
GAAGAGTTGGCTGAAAGCAT+GGG 0.587544 8:+19819756 None:intergenic
TGGTTTCAATGACGACTGCA+AGG 0.598185 8:-19820365 MsG0880043152.01.T01:CDS
ATTCTGACCTGACTTCTCCA+TGG 0.606760 8:+19820022 None:intergenic
AAGCGGAACTTACAAGATCG+TGG 0.613565 8:-19820083 MsG0880043152.01.T01:CDS
TGCCTCAGTTGAAAGATCAA+GGG 0.628690 8:+19819817 None:intergenic
GTTATTGTGACTATAACCGT+AGG 0.643563 8:-19820153 MsG0880043152.01.T01:CDS
AACCTAATAGAGACCGCCTA+CGG 0.645228 8:+19820137 None:intergenic
AATCGTGCGAAAAGCAAAGT+CGG 0.659162 8:+19819720 None:intergenic
GGGACCTCATCAAAGCCAGA+AGG 0.662116 8:+19819776 None:intergenic
GACTATAACCTTCAGCTACG+CGG 0.685556 8:-19820214 MsG0880043152.01.T01:CDS
TCTCGAGTAAACGAGTGACA+GGG 0.697895 8:+19820431 None:intergenic
ATTGTGACTATAACCGTAGG+CGG 0.719355 8:-19820150 MsG0880043152.01.T01:CDS
CATTGAAACCACGACCATCG+TGG 0.731571 8:+19820377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATTTTTATCCTTTTTA+TGG - Chr8:19820147-19820166 MsG0880043152.01.T01:CDS 15.0%
!! AAATACACACCATTATTAAA+TGG + Chr8:19820096-19820115 None:intergenic 20.0%
!! CTTATATCTCCATTTAATAA+TGG - Chr8:19820084-19820103 MsG0880043152.01.T01:CDS 20.0%
!! TTATTAAATGGAGATATAAG+AGG + Chr8:19820084-19820103 None:intergenic 20.0%
!!! ATAATTATTGGTTTCGTATA+TGG - Chr8:19819746-19819765 MsG0880043152.01.T01:CDS 20.0%
!!! TATTTTCTGTTATGATAACA+AGG - Chr8:19819717-19819736 MsG0880043152.01.T01:CDS 20.0%
!!! TTTATCCTTTTTATGGTTAT+GGG - Chr8:19820154-19820173 MsG0880043152.01.T01:CDS 20.0%
!!! TTTTATCCTTTTTATGGTTA+TGG - Chr8:19820153-19820172 MsG0880043152.01.T01:CDS 20.0%
!! TTATCCTTTTTATGGTTATG+GGG - Chr8:19820155-19820174 MsG0880043152.01.T01:CDS 25.0%
!!! AATTTTGGTTCTAAAACATC+TGG - Chr8:19819847-19819866 MsG0880043152.01.T01:CDS 25.0%
!!! ACAAGGAGTATCATAATTAT+TGG - Chr8:19819734-19819753 MsG0880043152.01.T01:CDS 25.0%
!!! AGGAAACTCAATTTGTTATA+TGG - Chr8:19820334-19820353 MsG0880043152.01.T01:CDS 25.0%
!!! ATTTTGGTTCTAAAACATCT+GGG - Chr8:19819848-19819867 MsG0880043152.01.T01:CDS 25.0%
AAGAAAACAAATATGGTCCA+TGG - Chr8:19819989-19820008 MsG0880043152.01.T01:CDS 30.0%
AATAATGGTGTGTATTTGAG+TGG - Chr8:19820099-19820118 MsG0880043152.01.T01:CDS 30.0%
ATATCCCCATAACCATAAAA+AGG + Chr8:19820162-19820181 None:intergenic 30.0%
GGAGATGAAGAAAACAAATA+TGG - Chr8:19819982-19820001 MsG0880043152.01.T01:CDS 30.0%
! TTTGGTTGTGACATTTTAAG+CGG - Chr8:19819928-19819947 MsG0880043152.01.T01:CDS 30.0%
!! TTTGTTTTCTTCATCTCCTT+TGG + Chr8:19819980-19819999 None:intergenic 30.0%
AAGGTTGTTAATTCCTGCAA+CGG - Chr8:19819682-19819701 MsG0880043152.01.T01:CDS 35.0%
AGACTGGATTTCAAGAATCT+TGG - Chr8:19820367-19820386 MsG0880043152.01.T01:CDS 35.0%
ATATGGCAAATGAAAGAGAC+TGG - Chr8:19820351-19820370 MsG0880043152.01.T01:CDS 35.0%
ATTTGAGTGGCACTATTTAC+TGG - Chr8:19820112-19820131 MsG0880043152.01.T01:CDS 35.0%
GGAGATATAAGAGGAATCAA+AGG + Chr8:19820075-19820094 None:intergenic 35.0%
GTTATTGTGACTATAACCGT+AGG - Chr8:19819875-19819894 MsG0880043152.01.T01:CDS 35.0%
TCCAAAAGAACATGAAGAGT+TGG + Chr8:19820288-19820307 None:intergenic 35.0%
TGAAATGCATAACCTTCTGT+TGG - Chr8:19820422-19820441 MsG0880043152.01.T01:CDS 35.0%
! ACACATTTTGTTCCAACAGA+AGG + Chr8:19820437-19820456 None:intergenic 35.0%
!! GAACAAGATCGAAAGCATTA+GGG - Chr8:19819782-19819801 MsG0880043152.01.T01:CDS 35.0%
!! GGTTGTTTGAAGTTCACTTT+TGG - Chr8:19819910-19819929 MsG0880043152.01.T01:CDS 35.0%
AATCAGTCCATGACTGTTTC+CGG - Chr8:19819619-19819638 MsG0880043152.01.T01:CDS 40.0%
AATCGTGCGAAAAGCAAAGT+CGG + Chr8:19820311-19820330 None:intergenic 40.0%
AATGCATAACAATCCGTTGC+AGG + Chr8:19819698-19819717 None:intergenic 40.0%
ATGCCTCAGTTGAAAGATCA+AGG + Chr8:19820215-19820234 None:intergenic 40.0%
ATTGTGACTATAACCGTAGG+CGG - Chr8:19819878-19819897 MsG0880043152.01.T01:CDS 40.0%
TCAGTTTGAGCGATGATTGT+TGG - Chr8:19820031-19820050 MsG0880043152.01.T01:CDS 40.0%
TGCCTCAGTTGAAAGATCAA+GGG + Chr8:19820214-19820233 None:intergenic 40.0%
! GCCAACTCTTCATGTTCTTT+TGG - Chr8:19820284-19820303 MsG0880043152.01.T01:CDS 40.0%
!! GGAACAAGATCGAAAGCATT+AGG - Chr8:19819781-19819800 MsG0880043152.01.T01:CDS 40.0%
!! TTGCTTTTCGCACGATTTCA+AGG - Chr8:19820314-19820333 MsG0880043152.01.T01:CDS 40.0%
AAAGTCACCGGAAACAGTCA+TGG + Chr8:19819629-19819648 None:intergenic 45.0%
AACCTAATAGAGACCGCCTA+CGG + Chr8:19819894-19819913 None:intergenic 45.0%
AAGCGGAACTTACAAGATCG+TGG - Chr8:19819945-19819964 MsG0880043152.01.T01:CDS 45.0%
ATATGGTCCATGGAGAAGTC+AGG - Chr8:19819999-19820018 MsG0880043152.01.T01:CDS 45.0%
ATTCTGACCTGACTTCTCCA+TGG + Chr8:19820009-19820028 None:intergenic 45.0%
CTCCCTTGATCTTTCAACTG+AGG - Chr8:19820209-19820228 MsG0880043152.01.T01:CDS 45.0%
GACTATAACCTTCAGCTACG+CGG - Chr8:19819814-19819833 MsG0880043152.01.T01:CDS 45.0%
TCGTATATGGAACCCTGCTA+CGG - Chr8:19819759-19819778 MsG0880043152.01.T01:CDS 45.0%
TCTCGAGTAAACGAGTGACA+GGG + Chr8:19819600-19819619 None:intergenic 45.0%
TGAAGAGTTGGCTGAAAGCA+TGG + Chr8:19820276-19820295 None:intergenic 45.0%
TGGTTTCAATGACGACTGCA+AGG - Chr8:19819663-19819682 MsG0880043152.01.T01:CDS 45.0%
TTCTCGAGTAAACGAGTGAC+AGG + Chr8:19819601-19819620 None:intergenic 45.0%
! ATGCAATTTTCGCTGCCTTC+TGG - Chr8:19820237-19820256 MsG0880043152.01.T01:CDS 45.0%
! GAAGAGTTGGCTGAAAGCAT+GGG + Chr8:19820275-19820294 None:intergenic 45.0%
!! CGCGGTTTGAGGTTCAATTT+TGG - Chr8:19819832-19819851 MsG0880043152.01.T01:CDS 45.0%
AACCGTAGGCGGTCTCTATT+AGG - Chr8:19819889-19819908 MsG0880043152.01.T01:CDS 50.0%
AACGAGTGACAGGGAGAGAT+TGG + Chr8:19819591-19819610 None:intergenic 50.0%
ACCATCGTGGCAAAAGTCAC+CGG + Chr8:19819641-19819660 None:intergenic 50.0%
ATCGTGGAGTTTCGTGCCAA+AGG - Chr8:19819961-19819980 MsG0880043152.01.T01:CDS 50.0%
CATTGAAACCACGACCATCG+TGG + Chr8:19819654-19819673 None:intergenic 50.0%
CGTATATGGAACCCTGCTAC+GGG - Chr8:19819760-19819779 MsG0880043152.01.T01:CDS 50.0%
TCGATCTTGTTCCCGTAGCA+GGG + Chr8:19819774-19819793 None:intergenic 50.0%
TTCGATCTTGTTCCCGTAGC+AGG + Chr8:19819775-19819794 None:intergenic 50.0%
ACCTCAAACCGCGTAGCTGA+AGG + Chr8:19819825-19819844 None:intergenic 55.0%
ACCTTCAGCTACGCGGTTTG+AGG - Chr8:19819821-19819840 MsG0880043152.01.T01:CDS 55.0%
GGGACCTCATCAAAGCCAGA+AGG + Chr8:19820255-19820274 None:intergenic 55.0%
! GACTTTTGCCACGATGGTCG+TGG - Chr8:19819643-19819662 MsG0880043152.01.T01:CDS 55.0%
! TCCGGTGACTTTTGCCACGA+TGG - Chr8:19819637-19819656 MsG0880043152.01.T01:CDS 55.0%
!! GCTGCCTTCTGGCTTTGATG+AGG - Chr8:19820248-19820267 MsG0880043152.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 19819577 19820473 19819577 ID=MsG0880043152.01;Name=MsG0880043152.01
Chr8 mRNA 19819577 19820473 19819577 ID=MsG0880043152.01.T01;Parent=MsG0880043152.01;Name=MsG0880043152.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|298
Chr8 exon 19819577 19820473 19819577 ID=MsG0880043152.01.T01:exon:5207;Parent=MsG0880043152.01.T01
Chr8 CDS 19819577 19820473 19819577 ID=MsG0880043152.01.T01:cds;Parent=MsG0880043152.01.T01
Gene Sequence

>MsG0880043152.01.T01

ATGCGGACTGTCCAATCTCTCCCTGTCACTCGTTTACTCGAGAATCAGTCCATGACTGTTTCCGGTGACTTTTGCCACGATGGTCGTGGTTTCAATGACGACTGCAAGGTTGTTAATTCCTGCAACGGATTGTTATGCATTATTTTCTGTTATGATAACAAGGAGTATCATAATTATTGGTTTCGTATATGGAACCCTGCTACGGGAACAAGATCGAAAGCATTAGGGACAAATCATGACTATAACCTTCAGCTACGCGGTTTGAGGTTCAATTTTGGTTCTAAAACATCTGGGAGTTGTTATTGTGACTATAACCGTAGGCGGTCTCTATTAGGTTGTTTGAAGTTCACTTTTGGTTGTGACATTTTAAGCGGAACTTACAAGATCGTGGAGTTTCGTGCCAAAGGAGATGAAGAAAACAAATATGGTCCATGGAGAAGTCAGGTCAGAATTCTCAGTTTGAGCGATGATTGTTGGAGAAATATCGACAGTTTTCCTTTGATTCCTCTTATATCTCCATTTAATAATGGTGTGTATTTGAGTGGCACTATTTACTGGTTAGCTATTCAGAACTATTTTTATCCTTTTTATGGTTATGGGGATATCACTCATGTTGATCAGTTCAAGATTGTCTCCCTTGATCTTTCAACTGAGGCATACATGCAATTTTCGCTGCCTTCTGGCTTTGATGAGGTCCCATGCTTTCAGCCAACTCTTCATGTTCTTTTGGACCGACTTTGCTTTTCGCACGATTTCAAGGAAACTCAATTTGTTATATGGCAAATGAAAGAGACTGGATTTCAAGAATCTTGGACTCAATTATTTAGAATTGACTACTCTAATCTTGAAATGCATAACCTTCTGTTGGAACAAAATGTGTTTAACAATGAACCTTAG
Protein sequence

>MsG0880043152.01.T01

MRTVQSLPVTRLLENQSMTVSGDFCHDGRGFNDDCKVVNSCNGLLCIIFCYDNKEYHNYWFRIWNPATGTRSKALGTNHDYNLQLRGLRFNFGSKTSGSCYCDYNRRRSLLGCLKFTFGCDILSGTYKIVEFRAKGDEENKYGPWRSQVRILSLSDDCWRNIDSFPLIPLISPFNNGVYLSGTIYWLAIQNYFYPFYGYGDITHVDQFKIVSLDLSTEAYMQFSLPSGFDEVPCFQPTLHVLLDRLCFSHDFKETQFVIWQMKETGFQESWTQLFRIDYSNLEMHNLLLEQNVFNNEP*