AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033261.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033261.01.T01 MTR_6g046320 86.626 329 39 1 1 324 1 329 0.0 589
MsG0680033261.01.T01 MTR_0627s0010 87.077 325 29 3 1 324 1 313 0.0 573
MsG0680033261.01.T01 MTR_5g021880 63.501 337 95 5 1 314 1 332 2.35e-140 406
MsG0680033261.01.T01 MTR_5g021880 63.501 337 95 5 1 314 1 332 2.44e-140 407
MsG0680033261.01.T01 MTR_5g021880 63.501 337 95 5 1 314 1 332 7.51e-140 406
MsG0680033261.01.T01 MTR_5g021860 64.392 337 81 7 1 314 1 321 2.44e-135 393
MsG0680033261.01.T01 MTR_5g021860 64.392 337 81 7 1 314 1 321 4.15e-135 394
MsG0680033261.01.T01 MTR_4g027370 63.205 337 85 7 1 314 1 321 8.58e-132 386
MsG0680033261.01.T01 MTR_5g021920 71.536 267 66 4 1 257 1 267 1.12e-126 364
MsG0680033261.01.T01 MTR_5g007940 60.355 338 92 6 1 314 1 320 1.74e-126 370
MsG0680033261.01.T01 MTR_5g022040 58.929 336 110 6 1 309 1 335 1.94e-121 358
MsG0680033261.01.T01 MTR_5g010610 60.615 325 107 6 1 314 1 315 4.39e-121 359
MsG0680033261.01.T01 MTR_5g022900 57.637 347 102 9 1 320 1 329 2.47e-118 350
MsG0680033261.01.T01 MTR_5g010550 56.522 345 116 7 1 314 1 342 6.74e-113 337
MsG0680033261.01.T01 MTR_5g010560 59.236 314 108 7 15 314 19 326 2.07e-110 330
MsG0680033261.01.T01 MTR_5g010550 59.554 314 109 7 15 314 19 328 2.33e-110 330
MsG0680033261.01.T01 MTR_5g022045 58.917 314 104 7 1 309 1 294 1.25e-108 325
MsG0680033261.01.T01 MTR_5g022750 53.548 310 97 5 1 308 1 265 4.17e-98 296
MsG0680033261.01.T01 MTR_7g090810 52.161 347 114 8 1 330 1 312 4.30e-98 296
MsG0680033261.01.T01 MTR_7g117100 62.447 237 61 5 101 314 1 232 4.36e-92 276
MsG0680033261.01.T01 MTR_7g117100 62.447 237 61 5 101 314 1 232 2.92e-91 277
MsG0680033261.01.T01 MTR_5g022090 51.592 314 85 10 1 309 1 252 7.07e-88 270
MsG0680033261.01.T01 MTR_5g010660 52.448 286 88 6 1 276 1 248 1.19e-81 256
MsG0680033261.01.T01 MTR_5g027370 47.910 311 133 9 1 308 1 285 1.35e-79 249
MsG0680033261.01.T01 MTR_5g027330 47.588 311 134 9 1 308 12 296 6.27e-79 248
MsG0680033261.01.T01 MTR_7g090810 58.861 158 61 3 175 330 13 168 1.65e-51 173
MsG0680033261.01.T01 MTR_3g463170 47.000 100 53 0 1 100 54 153 5.60e-23 94.0
MsG0680033261.01.T01 MTR_5g074870 51.000 100 49 0 1 100 44 143 1.43e-21 89.7
MsG0680033261.01.T01 MTR_3g006670 31.522 276 149 13 39 307 49 291 5.01e-21 93.6
MsG0680033261.01.T01 MTR_0115s0020 27.304 293 159 12 39 309 10 270 9.48e-20 89.7
MsG0680033261.01.T01 MTR_7g407070 27.888 251 148 6 39 282 32 256 5.33e-19 87.4
MsG0680033261.01.T01 MTR_3g011060 27.660 282 165 10 39 310 28 280 7.31e-19 87.0
MsG0680033261.01.T01 MTR_3g436150 30.800 250 138 11 39 282 32 252 3.57e-18 85.1
MsG0680033261.01.T01 MTR_2g021155 29.630 270 140 10 36 300 38 262 4.18e-18 85.9
MsG0680033261.01.T01 MTR_4g055060 28.832 274 149 10 38 300 29 267 5.67e-18 84.3
MsG0680033261.01.T01 MTR_0064s0160 26.871 294 161 11 39 310 42 303 4.87e-17 82.0
MsG0680033261.01.T01 MTR_3g011100 28.458 253 136 10 39 282 235 451 1.95e-16 80.5
MsG0680033261.01.T01 MTR_1g017970 38.462 169 60 5 1 169 1 125 1.99e-16 75.1
MsG0680033261.01.T01 MTR_3g024040 26.909 275 153 10 45 316 37 266 2.56e-16 79.3
MsG0680033261.01.T01 MTR_3g014540 28.188 298 152 16 36 317 26 277 5.16e-16 78.6
MsG0680033261.01.T01 MTR_7g060940 30.800 250 121 10 38 282 21 223 1.25e-15 77.4
MsG0680033261.01.T01 MTR_3g058440 28.920 287 164 13 39 319 35 287 4.80e-15 75.1
MsG0680033261.01.T01 MTR_4g133170 27.820 266 144 11 39 297 4 228 4.99e-15 75.9
MsG0680033261.01.T01 MTR_0134s0060 26.523 279 146 11 37 282 10 262 5.61e-15 75.9
MsG0680033261.01.T01 MTR_3g007430 27.451 255 142 9 42 290 46 263 5.76e-15 75.5
MsG0680033261.01.T01 MTR_3g009310 29.958 237 128 10 29 262 32 233 7.69e-15 75.1
MsG0680033261.01.T01 MTR_7g061050 29.213 267 111 10 38 282 12 222 1.22e-14 74.7
MsG0680033261.01.T01 MTR_3g058480 26.756 299 171 11 39 326 39 300 4.41e-14 72.4
MsG0680033261.01.T01 MTR_1g054575 28.571 259 130 12 38 290 51 260 8.68e-14 72.8
MsG0680033261.01.T01 MTR_5g057790 28.916 249 133 12 39 282 46 255 9.50e-14 72.0
MsG0680033261.01.T01 MTR_3g034180 27.372 274 146 10 39 297 123 358 1.01e-13 72.0
MsG0680033261.01.T01 MTR_3g013740 25.795 283 172 10 39 310 44 299 1.18e-13 71.6
MsG0680033261.01.T01 MTR_5g007610 26.740 273 151 9 39 297 41 278 1.23e-13 71.6
MsG0680033261.01.T01 MTR_6g027910 27.660 282 163 11 43 310 13 267 1.47e-13 71.2
MsG0680033261.01.T01 MTR_4g107820 27.711 249 137 10 39 282 36 246 2.19e-13 70.9
MsG0680033261.01.T01 MTR_4g107780 27.711 249 137 10 39 282 36 246 2.19e-13 70.9
MsG0680033261.01.T01 MTR_3g034130 27.622 286 152 10 39 307 9 256 2.48e-13 70.5
MsG0680033261.01.T01 MTR_4g107820 27.711 249 137 10 39 282 36 246 2.58e-13 70.9
MsG0680033261.01.T01 MTR_4g107780 27.711 249 137 10 39 282 36 246 2.58e-13 70.9
MsG0680033261.01.T01 MTR_0760s0010 27.273 253 142 9 45 297 53 263 2.65e-13 70.5
MsG0680033261.01.T01 MTR_2g046920 26.667 255 130 8 38 282 23 230 3.08e-13 70.5
MsG0680033261.01.T01 MTR_4g102410 25.606 289 186 11 39 313 61 334 3.56e-13 70.5
MsG0680033261.01.T01 MTR_5g057690 27.236 246 131 10 39 282 46 245 4.18e-13 70.1
MsG0680033261.01.T01 MTR_4g023080 25.725 276 149 11 39 307 9 235 4.34e-13 69.7
MsG0680033261.01.T01 MTR_2g426070 27.640 322 179 14 37 333 4 296 4.46e-13 70.1
MsG0680033261.01.T01 MTR_7g017040 27.599 279 142 13 23 281 3 241 4.81e-13 69.7
MsG0680033261.01.T01 MTR_3g010430 26.370 292 151 12 39 307 36 286 5.00e-13 69.7
MsG0680033261.01.T01 MTR_2g078900 28.788 264 128 14 39 293 33 245 5.19e-13 69.3
MsG0680033261.01.T01 MTR_3g036290 25.306 245 138 7 38 282 21 220 6.27e-13 69.3
MsG0680033261.01.T01 MTR_5g011200 26.721 247 142 11 39 282 17 227 6.76e-13 69.3
MsG0680033261.01.T01 MTR_3g009240 27.273 275 155 10 39 307 36 271 7.72e-13 69.3
MsG0680033261.01.T01 MTR_1g055070 24.476 286 190 9 39 318 49 314 8.64e-13 68.9
MsG0680033261.01.T01 MTR_7g061060 24.841 314 164 11 38 331 12 273 8.77e-13 68.9
MsG0680033261.01.T01 MTR_5g057643 29.596 223 115 11 39 258 46 229 9.37e-13 67.8
MsG0680033261.01.T01 MTR_5g096910 23.381 278 184 7 39 307 17 274 1.49e-12 68.2
MsG0680033261.01.T01 MTR_1g094210 26.587 252 132 10 38 285 56 258 1.53e-12 68.6
MsG0680033261.01.T01 MTR_1g094210 25.510 294 159 12 9 294 30 271 1.57e-12 68.2
MsG0680033261.01.T01 MTR_7g056760 30.531 226 126 9 38 258 22 221 1.73e-12 68.2
MsG0680033261.01.T01 MTR_3g014570 25.352 284 159 13 39 310 29 271 1.98e-12 67.8
MsG0680033261.01.T01 MTR_8g013010 24.908 273 152 10 39 300 54 284 1.99e-12 67.4
MsG0680033261.01.T01 MTR_6g004660 28.966 290 158 17 36 311 13 268 3.52e-12 67.0
MsG0680033261.01.T01 MTR_4g109270 28.346 254 130 11 39 284 8 217 3.71e-12 67.0
MsG0680033261.01.T01 MTR_7g013590 25.157 318 190 10 8 316 5 283 5.14e-12 66.6
MsG0680033261.01.T01 MTR_2g021252 28.384 229 113 11 42 261 50 236 5.19e-12 66.6
MsG0680033261.01.T01 MTR_6g053240 26.552 290 169 12 39 319 28 282 5.95e-12 66.6
MsG0680033261.01.T01 MTR_2g047832 27.490 251 136 10 38 284 28 236 6.04e-12 66.6
MsG0680033261.01.T01 MTR_6g053260 27.458 295 169 13 23 310 322 578 6.82e-12 67.0
MsG0680033261.01.T01 MTR_3g010450 27.599 279 154 12 43 319 1 233 7.25e-12 65.1
MsG0680033261.01.T01 MTR_2g034700 25.651 269 177 7 39 305 14 261 8.12e-12 65.9
MsG0680033261.01.T01 MTR_8g467140 28.253 269 143 11 39 299 32 258 9.77e-12 65.5
MsG0680033261.01.T01 MTR_7g061090 27.615 239 126 8 38 264 21 224 1.18e-11 65.5
MsG0680033261.01.T01 MTR_5g057020 27.236 246 126 10 39 282 46 240 1.20e-11 65.5
MsG0680033261.01.T01 MTR_7g056717 26.073 303 137 12 38 310 22 267 1.27e-11 65.5
MsG0680033261.01.T01 MTR_6g048140 28.854 253 136 10 39 284 39 254 1.30e-11 65.5
MsG0680033261.01.T01 MTR_3g013770 27.148 291 162 14 33 310 27 280 1.70e-11 65.1
MsG0680033261.01.T01 MTR_2g043420 34.586 133 62 6 38 168 25 134 2.00e-11 62.0
MsG0680033261.01.T01 MTR_3g010440 25.806 248 150 8 39 285 26 240 2.26e-11 64.3
MsG0680033261.01.T01 MTR_7g055987 25.170 294 169 14 38 327 19 265 2.48e-11 64.7
MsG0680033261.01.T01 MTR_4g021785 24.364 275 153 11 39 307 9 234 3.57e-11 63.9
MsG0680033261.01.T01 MTR_5g046300 26.829 287 144 13 39 310 4 239 4.62e-11 63.5
MsG0680033261.01.T01 MTR_5g046290 26.829 287 144 13 39 310 4 239 4.62e-11 63.5
MsG0680033261.01.T01 MTR_3g036335 27.778 252 140 10 39 285 41 255 7.56e-11 63.2
MsG0680033261.01.T01 MTR_5g070088 28.295 258 146 11 39 284 7 237 7.57e-11 63.2
MsG0680033261.01.T01 MTR_0128s0020 24.828 290 149 11 38 303 17 261 7.77e-11 63.2
MsG0680033261.01.T01 MTR_7g066850 25.283 265 131 9 38 286 22 235 8.87e-11 63.2
MsG0680033261.01.T01 MTR_2g055970 28.175 252 127 10 39 282 211 416 9.14e-11 63.2
MsG0680033261.01.T01 MTR_2g046800 25.965 285 176 11 38 307 13 277 9.24e-11 62.8
MsG0680033261.01.T01 MTR_7g056820 27.203 261 138 10 38 288 6 224 9.24e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033261.01.T01 AT3G06240 27.645 293 167 12 38 307 35 305 5.35e-19 87.8
MsG0680033261.01.T01 AT1G53370 25.862 290 163 11 20 302 9 253 5.91e-14 72.4
MsG0680033261.01.T01 AT3G07870 24.567 289 166 8 39 310 28 281 1.07e-13 72.0
MsG0680033261.01.T01 AT1G53550 24.727 275 170 11 35 306 31 271 4.55e-11 63.9

Find 78 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCCATATTTATCAATT+TGG 0.177874 6:-60611061 None:intergenic
GTAAATGTGTGTGCAAAATT+TGG 0.230841 6:+60610286 MsG0680033261.01.T01:CDS
GTTCGAATCATGAGACTAAT+TGG 0.246505 6:-60610360 None:intergenic
AATGACACGGTTCGTGTAAT+AGG 0.270939 6:+60610708 MsG0680033261.01.T01:CDS
TATTAGCATGGGAGAATTAA+AGG 0.273494 6:+60611099 MsG0680033261.01.T01:CDS
TCCTAAAACTAATGAATATA+AGG 0.275555 6:+60610755 MsG0680033261.01.T01:CDS
GCAGATCACTAAAGGGTTTC+CGG 0.276169 6:-60610628 None:intergenic
ACATGACTGCCAACCCCAAC+TGG 0.282330 6:-60611032 None:intergenic
TCTCTGTTGCAAGCAATATA+AGG 0.283111 6:-60610543 None:intergenic
CATCTTTGGCTAGCCCTAAC+AGG 0.301650 6:-60610138 None:intergenic
CAGGACCAAATTGATAAATA+TGG 0.308143 6:+60611056 MsG0680033261.01.T01:CDS
ATAGGACAAGAAGCTGGTTT+TGG 0.341685 6:+60610726 MsG0680033261.01.T01:CDS
AGGGTTCAATTACCCCTGTT+AGG 0.352755 6:+60610124 MsG0680033261.01.T01:CDS
GCTAGCCAAAGATGCAATAA+AGG 0.378022 6:+60610147 MsG0680033261.01.T01:CDS
AGTGATCTGCAACCCATTCA+TGG 0.389927 6:+60610641 MsG0680033261.01.T01:CDS
ACAAATGAGAAGAGACTTGA+TGG 0.428308 6:-60610265 None:intergenic
CTTCATTGGATCAGATTTGA+GGG 0.430753 6:+60610945 MsG0680033261.01.T01:CDS
GTGTGAATGGTGCACTTCAT+TGG 0.443289 6:+60610931 MsG0680033261.01.T01:CDS
CGAAGAGGAAGCCTGAATAT+AGG 0.446671 6:-60610477 None:intergenic
AGACATGAAAATGAAATTTG+AGG 0.447128 6:-60610894 None:intergenic
CAAAGATGCAATAAAGGAAA+AGG 0.450262 6:+60610153 MsG0680033261.01.T01:CDS
ACTAAAGGGTTTCCGGTAGT+TGG 0.453956 6:-60610621 None:intergenic
TGAAGCTTGAGCCTATATTC+AGG 0.456225 6:+60610466 MsG0680033261.01.T01:CDS
GATCCTGAAAAGTTTGAGAT+TGG 0.461475 6:+60610429 MsG0680033261.01.T01:CDS
AGTATTGTGAATTCTTGTAA+TGG 0.464840 6:+60610579 MsG0680033261.01.T01:CDS
ATTACACGAACCGTGTCATT+CGG 0.466156 6:-60610705 None:intergenic
ATGAATCCCACTTGTGTGAA+TGG 0.466445 6:+60610918 MsG0680033261.01.T01:CDS
CTCTGTTGCAAGCAATATAA+GGG 0.469694 6:-60610542 None:intergenic
TGGGGTTGGCAGTCATGTCC+AGG 0.478359 6:+60611037 MsG0680033261.01.T01:CDS
GGGTTCAATTACCCCTGTTA+GGG 0.480294 6:+60610125 MsG0680033261.01.T01:CDS
ATGTGGGCGGTGAGGTGGGA+TGG 0.484801 6:-60610228 None:intergenic
AATGGGTTGCAGATCACTAA+AGG 0.491916 6:-60610636 None:intergenic
ATGGAAGAATATCAAAATAG+TGG 0.492761 6:-60610209 None:intergenic
CATATTTATCAATTTGGTCC+TGG 0.492897 6:-60611055 None:intergenic
GTGATCTGCAACCCATTCAT+GGG 0.493175 6:+60610642 MsG0680033261.01.T01:CDS
ATGGGTTGCAGATCACTAAA+GGG 0.499946 6:-60610635 None:intergenic
ACTTCATTGGATCAGATTTG+AGG 0.504033 6:+60610944 MsG0680033261.01.T01:CDS
TTGGATCAGATTTGAGGGAA+AGG 0.514735 6:+60610950 MsG0680033261.01.T01:CDS
ACATTGATATTTCTCCATGT+TGG 0.515176 6:-60610867 None:intergenic
GCAAAATGTGGGCGGTGAGG+TGG 0.515225 6:-60610233 None:intergenic
CATGACTGCCAACCCCAACT+GGG 0.525354 6:-60611031 None:intergenic
ATCTTTGGCTAGCCCTAACA+GGG 0.532994 6:-60610137 None:intergenic
CAAAATGTGGGCGGTGAGGT+GGG 0.534960 6:-60610232 None:intergenic
GTGTGTGCAAAATTTGGAAA+GGG 0.537487 6:+60610292 MsG0680033261.01.T01:CDS
TTTCAGGATCGCACTCAAGA+AGG 0.539105 6:-60610416 None:intergenic
ATGCTAATATGTATGTTACT+TGG 0.548079 6:-60611085 None:intergenic
ATACGAACTATAGTAGCTTC+AGG 0.550118 6:-60610681 None:intergenic
GATCGCACTCAAGAAGGTAG+AGG 0.575897 6:-60610410 None:intergenic
TGTTATACATGTCAATTCCT+CGG 0.577840 6:+60610800 MsG0680033261.01.T01:CDS
TGTTTGTCTGAACCAACTAC+CGG 0.582996 6:+60610609 MsG0680033261.01.T01:CDS
AGGAAAAGGAAAAGTTGAGG+AGG 0.583131 6:+60610167 MsG0680033261.01.T01:CDS
AAGTGCACCATTCACACAAG+TGG 0.585491 6:-60610925 None:intergenic
AAGTAACATACATATTAGCA+TGG 0.586965 6:+60611087 MsG0680033261.01.T01:CDS
GTGATGATGTCAAATCACTT+AGG 0.588438 6:+60610499 MsG0680033261.01.T01:CDS
CGTGTAATAGGACAAGAAGC+TGG 0.589080 6:+60610720 MsG0680033261.01.T01:CDS
AGTTCGTATGCCGAATGACA+CGG 0.590736 6:+60610695 MsG0680033261.01.T01:CDS
ATGACTGCCAACCCCAACTG+GGG 0.608140 6:-60611030 None:intergenic
CAAATGAGAAGAGACTTGAT+GGG 0.614627 6:-60610264 None:intergenic
TGTGTGTGCAAAATTTGGAA+AGG 0.619165 6:+60610291 MsG0680033261.01.T01:CDS
GAACACATGCTCAGAGTCCG+AGG 0.621957 6:-60610817 None:intergenic
ATCGCACTCAAGAAGGTAGA+GGG 0.626102 6:-60610409 None:intergenic
AGTAACATACATATTAGCAT+GGG 0.629764 6:+60611088 MsG0680033261.01.T01:CDS
CTTGCTGAGATACACACACT+CGG 0.637983 6:+60610840 MsG0680033261.01.T01:CDS
TAAAGGAAAAGGAAAAGTTG+AGG 0.638092 6:+60610164 MsG0680033261.01.T01:CDS
ACACACTCGGAACACCAACA+TGG 0.640562 6:+60610853 MsG0680033261.01.T01:CDS
TGATCTGCAACCCATTCATG+GGG 0.645282 6:+60610643 MsG0680033261.01.T01:CDS
CGAGTGTGTGTATCTCAGCA+AGG 0.648231 6:-60610839 None:intergenic
AGTGCACCATTCACACAAGT+GGG 0.658959 6:-60610924 None:intergenic
GATTTGACATCATCACGAAG+AGG 0.667772 6:-60610492 None:intergenic
TGGGAAGTTGAAGCAAAATG+TGG 0.672550 6:-60610245 None:intergenic
TGACTGCCAACCCCAACTGG+GGG 0.677369 6:-60611029 None:intergenic
GGGAAGTTGAAGCAAAATGT+GGG 0.696152 6:-60610244 None:intergenic
ATATAGGCTCAAGCTTCACG+TGG 0.702980 6:-60610461 None:intergenic
AACATGGAGAAATATCAATG+TGG 0.716841 6:+60610869 MsG0680033261.01.T01:CDS
GAAGCAAAATGTGGGCGGTG+AGG 0.717628 6:-60610236 None:intergenic
AAGTTGAAGCAAAATGTGGG+CGG 0.775595 6:-60610241 None:intergenic
GATCTGCAACCCATTCATGG+GGG 0.783717 6:+60610644 MsG0680033261.01.T01:CDS
TCTTTGGCTAGCCCTAACAG+GGG 0.806922 6:-60610136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGCCATATTTATCAATT+TGG - Chr6:60611064-60611083 None:intergenic 20.0%
!! TCCTAAAACTAATGAATATA+AGG + Chr6:60610755-60610774 MsG0680033261.01.T01:CDS 20.0%
!!! ACCTTATATTCATTAGTTTT+AGG - Chr6:60610759-60610778 None:intergenic 20.0%
!!! ATAAGGTAATACATATTTTG+AGG + Chr6:60610772-60610791 MsG0680033261.01.T01:CDS 20.0%
! AAGTAACATACATATTAGCA+TGG + Chr6:60611087-60611106 MsG0680033261.01.T01:CDS 25.0%
! AGACATGAAAATGAAATTTG+AGG - Chr6:60610897-60610916 None:intergenic 25.0%
! AGTAACATACATATTAGCAT+GGG + Chr6:60611088-60611107 MsG0680033261.01.T01:CDS 25.0%
! AGTATTGTGAATTCTTGTAA+TGG + Chr6:60610579-60610598 MsG0680033261.01.T01:CDS 25.0%
! ATGCTAATATGTATGTTACT+TGG - Chr6:60611088-60611107 None:intergenic 25.0%
! ATGGAAGAATATCAAAATAG+TGG - Chr6:60610212-60610231 None:intergenic 25.0%
AACATGGAGAAATATCAATG+TGG + Chr6:60610869-60610888 MsG0680033261.01.T01:CDS 30.0%
ACATTGATATTTCTCCATGT+TGG - Chr6:60610870-60610889 None:intergenic 30.0%
CAAAGATGCAATAAAGGAAA+AGG + Chr6:60610153-60610172 MsG0680033261.01.T01:CDS 30.0%
CAGGACCAAATTGATAAATA+TGG + Chr6:60611056-60611075 MsG0680033261.01.T01:CDS 30.0%
CATATTTATCAATTTGGTCC+TGG - Chr6:60611058-60611077 None:intergenic 30.0%
GTAAATGTGTGTGCAAAATT+TGG + Chr6:60610286-60610305 MsG0680033261.01.T01:CDS 30.0%
TAAAGGAAAAGGAAAAGTTG+AGG + Chr6:60610164-60610183 MsG0680033261.01.T01:CDS 30.0%
TGTTATACATGTCAATTCCT+CGG + Chr6:60610800-60610819 MsG0680033261.01.T01:CDS 30.0%
! CTTTTCCTTTATTGCATCTT+TGG - Chr6:60610155-60610174 None:intergenic 30.0%
ACAAATGAGAAGAGACTTGA+TGG - Chr6:60610268-60610287 None:intergenic 35.0%
ACTTCATTGGATCAGATTTG+AGG + Chr6:60610944-60610963 MsG0680033261.01.T01:CDS 35.0%
ATACGAACTATAGTAGCTTC+AGG - Chr6:60610684-60610703 None:intergenic 35.0%
CAAATGAGAAGAGACTTGAT+GGG - Chr6:60610267-60610286 None:intergenic 35.0%
CTCTGTTGCAAGCAATATAA+GGG - Chr6:60610545-60610564 None:intergenic 35.0%
CTTCATTGGATCAGATTTGA+GGG + Chr6:60610945-60610964 MsG0680033261.01.T01:CDS 35.0%
GTGTGTGCAAAATTTGGAAA+GGG + Chr6:60610292-60610311 MsG0680033261.01.T01:CDS 35.0%
GTTCGAATCATGAGACTAAT+TGG - Chr6:60610363-60610382 None:intergenic 35.0%
TCTCTGTTGCAAGCAATATA+AGG - Chr6:60610546-60610565 None:intergenic 35.0%
TGTGTGTGCAAAATTTGGAA+AGG + Chr6:60610291-60610310 MsG0680033261.01.T01:CDS 35.0%
TTATGAATTCCCCCATGAAT+GGG - Chr6:60610656-60610675 None:intergenic 35.0%
! CTTCCAATCTCAAACTTTTC+AGG - Chr6:60610435-60610454 None:intergenic 35.0%
! GATCCTGAAAAGTTTGAGAT+TGG + Chr6:60610429-60610448 MsG0680033261.01.T01:CDS 35.0%
! GTGATGATGTCAAATCACTT+AGG + Chr6:60610499-60610518 MsG0680033261.01.T01:CDS 35.0%
AAGTTGAAGCAAAATGTGGG+CGG - Chr6:60610244-60610263 None:intergenic 40.0%
AATGACACGGTTCGTGTAAT+AGG + Chr6:60610708-60610727 MsG0680033261.01.T01:CDS 40.0%
AGGAAAAGGAAAAGTTGAGG+AGG + Chr6:60610167-60610186 MsG0680033261.01.T01:CDS 40.0%
ATGAATCCCACTTGTGTGAA+TGG + Chr6:60610918-60610937 MsG0680033261.01.T01:CDS 40.0%
CTTATGAATTCCCCCATGAA+TGG - Chr6:60610657-60610676 None:intergenic 40.0%
GATTTGACATCATCACGAAG+AGG - Chr6:60610495-60610514 None:intergenic 40.0%
GCTAGCCAAAGATGCAATAA+AGG + Chr6:60610147-60610166 MsG0680033261.01.T01:CDS 40.0%
GGGAAGTTGAAGCAAAATGT+GGG - Chr6:60610247-60610266 None:intergenic 40.0%
TGAAGCTTGAGCCTATATTC+AGG + Chr6:60610466-60610485 MsG0680033261.01.T01:CDS 40.0%
TGGGAAGTTGAAGCAAAATG+TGG - Chr6:60610248-60610267 None:intergenic 40.0%
TGTTTGTCTGAACCAACTAC+CGG + Chr6:60610609-60610628 MsG0680033261.01.T01:CDS 40.0%
TTGGATCAGATTTGAGGGAA+AGG + Chr6:60610950-60610969 MsG0680033261.01.T01:CDS 40.0%
! ATGGGTTGCAGATCACTAAA+GGG - Chr6:60610638-60610657 None:intergenic 40.0%
! ATTACACGAACCGTGTCATT+CGG - Chr6:60610708-60610727 None:intergenic 40.0%
!! AATGGGTTGCAGATCACTAA+AGG - Chr6:60610639-60610658 None:intergenic 40.0%
!! ATAGGACAAGAAGCTGGTTT+TGG + Chr6:60610726-60610745 MsG0680033261.01.T01:CDS 40.0%
AAGTGCACCATTCACACAAG+TGG - Chr6:60610928-60610947 None:intergenic 45.0%
ACTAAAGGGTTTCCGGTAGT+TGG - Chr6:60610624-60610643 None:intergenic 45.0%
AGGGTTCAATTACCCCTGTT+AGG + Chr6:60610124-60610143 MsG0680033261.01.T01:CDS 45.0%
AGTGATCTGCAACCCATTCA+TGG + Chr6:60610641-60610660 MsG0680033261.01.T01:CDS 45.0%
AGTGCACCATTCACACAAGT+GGG - Chr6:60610927-60610946 None:intergenic 45.0%
AGTTCGTATGCCGAATGACA+CGG + Chr6:60610695-60610714 MsG0680033261.01.T01:CDS 45.0%
ATATAGGCTCAAGCTTCACG+TGG - Chr6:60610464-60610483 None:intergenic 45.0%
ATCGCACTCAAGAAGGTAGA+GGG - Chr6:60610412-60610431 None:intergenic 45.0%
CGAAGAGGAAGCCTGAATAT+AGG - Chr6:60610480-60610499 None:intergenic 45.0%
CGTGTAATAGGACAAGAAGC+TGG + Chr6:60610720-60610739 MsG0680033261.01.T01:CDS 45.0%
CTTGCTGAGATACACACACT+CGG + Chr6:60610840-60610859 MsG0680033261.01.T01:CDS 45.0%
GCAGATCACTAAAGGGTTTC+CGG - Chr6:60610631-60610650 None:intergenic 45.0%
GGGTTCAATTACCCCTGTTA+GGG + Chr6:60610125-60610144 MsG0680033261.01.T01:CDS 45.0%
GTGATCTGCAACCCATTCAT+GGG + Chr6:60610642-60610661 MsG0680033261.01.T01:CDS 45.0%
GTGTGAATGGTGCACTTCAT+TGG + Chr6:60610931-60610950 MsG0680033261.01.T01:CDS 45.0%
TGATCTGCAACCCATTCATG+GGG + Chr6:60610643-60610662 MsG0680033261.01.T01:CDS 45.0%
TTTCAGGATCGCACTCAAGA+AGG - Chr6:60610419-60610438 None:intergenic 45.0%
! ATCTTTGGCTAGCCCTAACA+GGG - Chr6:60610140-60610159 None:intergenic 45.0%
ACACACTCGGAACACCAACA+TGG + Chr6:60610853-60610872 MsG0680033261.01.T01:CDS 50.0%
CGAGTGTGTGTATCTCAGCA+AGG - Chr6:60610842-60610861 None:intergenic 50.0%
GATCGCACTCAAGAAGGTAG+AGG - Chr6:60610413-60610432 None:intergenic 50.0%
GATCTGCAACCCATTCATGG+GGG + Chr6:60610644-60610663 MsG0680033261.01.T01:CDS 50.0%
! CATCTTTGGCTAGCCCTAAC+AGG - Chr6:60610141-60610160 None:intergenic 50.0%
! TCTTTGGCTAGCCCTAACAG+GGG - Chr6:60610139-60610158 None:intergenic 50.0%
ACATGACTGCCAACCCCAAC+TGG - Chr6:60611035-60611054 None:intergenic 55.0%
ATGACTGCCAACCCCAACTG+GGG - Chr6:60611033-60611052 None:intergenic 55.0%
ATTTCCCTCTCCCCCAGTTG+GGG + Chr6:60611019-60611038 MsG0680033261.01.T01:CDS 55.0%
CAAAATGTGGGCGGTGAGGT+GGG - Chr6:60610235-60610254 None:intergenic 55.0%
CATGACTGCCAACCCCAACT+GGG - Chr6:60611034-60611053 None:intergenic 55.0%
CATTTCCCTCTCCCCCAGTT+GGG + Chr6:60611018-60611037 MsG0680033261.01.T01:CDS 55.0%
GAACACATGCTCAGAGTCCG+AGG - Chr6:60610820-60610839 None:intergenic 55.0%
GAAGCAAAATGTGGGCGGTG+AGG - Chr6:60610239-60610258 None:intergenic 55.0%
TCATTTCCCTCTCCCCCAGT+TGG + Chr6:60611017-60611036 MsG0680033261.01.T01:CDS 55.0%
GCAAAATGTGGGCGGTGAGG+TGG - Chr6:60610236-60610255 None:intergenic 60.0%
TGACTGCCAACCCCAACTGG+GGG - Chr6:60611032-60611051 None:intergenic 60.0%
! TGGGGTTGGCAGTCATGTCC+AGG + Chr6:60611037-60611056 MsG0680033261.01.T01:CDS 60.0%
ATGTGGGCGGTGAGGTGGGA+TGG - Chr6:60610231-60610250 None:intergenic 65.0%
CCAACCCCAACTGGGGGAGA+GGG - Chr6:60611026-60611045 None:intergenic 65.0%
CCCTCTCCCCCAGTTGGGGT+TGG + Chr6:60611023-60611042 MsG0680033261.01.T01:CDS 70.0%
GCCAACCCCAACTGGGGGAG+AGG - Chr6:60611027-60611046 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 60610111 60611118 60610111 ID=MsG0680033261.01;Name=MsG0680033261.01
Chr6 mRNA 60610111 60611118 60610111 ID=MsG0680033261.01.T01;Parent=MsG0680033261.01;Name=MsG0680033261.01.T01;_AED=0.14;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|335
Chr6 exon 60610111 60611118 60610111 ID=MsG0680033261.01.T01:exon:5436;Parent=MsG0680033261.01.T01
Chr6 CDS 60610111 60611118 60610111 ID=MsG0680033261.01.T01:cds;Parent=MsG0680033261.01.T01
Gene Sequence

>MsG0680033261.01.T01

ATGAAAAGAAAAAAGGGTTCAATTACCCCTGTTAGGGCTAGCCAAAGATGCAATAAAGGAAAAGGAAAAGTTGAGGAGGCAGAAAGTCATGAATGTCGCCACTATTTTGATATTCTTCCATCCCACCTCACCGCCCACATTTTGCTTCAACTTCCCATCAAGTCTCTTCTCATTTGTAAATGTGTGTGCAAAATTTGGAAAGGGATTATTTCAGAATCACATTTTGCTAAATTACACTTTGAGCGATCACCAATTAGTCTCATGATTCGAACAAGATACTATAGACGAGTGTCAAGAACCCTCTACCTTCTTGAGTGCGATCCTGAAAAGTTTGAGATTGGAAGCAACAACCACGTGAAGCTTGAGCCTATATTCAGGCTTCCTCTTCGTGATGATGTCAAATCACTTAGGATAAAGTATAAATCTAAGCACCCTTATATTGCTTGCAACAGAGATCGTGATAATTATAGTATTGTGAATTCTTGTAATGGCTTGCTATGTTTGTCTGAACCAACTACCGGAAACCCTTTAGTGATCTGCAACCCATTCATGGGGGAATTCATAAGACTACCTGAAGCTACTATAGTTCGTATGCCGAATGACACGGTTCGTGTAATAGGACAAGAAGCTGGTTTTGGTTTCTATCCTAAAACTAATGAATATAAGGTAATACATATTTTGAGGAGACGTGTTATACATGTCAATTCCTCGGACTCTGAGCATGTGTTCCTTGCTGAGATACACACACTCGGAACACCAACATGGAGAAATATCAATGTGGATCCTCAAATTTCATTTTCATGTCTTATGAATCCCACTTGTGTGAATGGTGCACTTCATTGGATCAGATTTGAGGGAAAGGAAACGTCTATATTGTGTTTTTGTTTTGACAGTGAGAGATTGCAATCATTTCCCTCTCCCCCAGTTGGGGTTGGCAGTCATGTCCAGGACCAAATTGATAAATATGGCTTTTACCAAGTAACATACATATTAGCATGGGAGAATTAA
Protein sequence

>MsG0680033261.01.T01

MKRKKGSITPVRASQRCNKGKGKVEEAESHECRHYFDILPSHLTAHILLQLPIKSLLICKCVCKIWKGIISESHFAKLHFERSPISLMIRTRYYRRVSRTLYLLECDPEKFEIGSNNHVKLEPIFRLPLRDDVKSLRIKYKSKHPYIACNRDRDNYSIVNSCNGLLCLSEPTTGNPLVICNPFMGEFIRLPEATIVRMPNDTVRVIGQEAGFGFYPKTNEYKVIHILRRRVIHVNSSDSEHVFLAEIHTLGTPTWRNINVDPQISFSCLMNPTCVNGALHWIRFEGKETSILCFCFDSERLQSFPSPPVGVGSHVQDQIDKYGFYQVTYILAWEN*