AlfalfaGEDB | MsG0780038490.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038490.01

KEGG: -
GO: GO:0005515
PFAM: PF00646

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038490.01.T01	XP_013448641.1	93.556	419	26	1	1	419	1	418	0	815

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038490.01.T01	Q9LIR8	27.778	360	189	14	22	356	17	330	5.47E-17	85.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038490.01.T01	A0A072U0K3	93.556	419	26	1	1	419	1	418	0.0	815

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180000330.01	MsG0780038490.01	PPI
MsG0180001056.01	MsG0780038490.01	PPI
MsG0180002191.01	MsG0780038490.01	PPI
MsG0180002493.01	MsG0780038490.01	PPI
MsG0180002949.01	MsG0780038490.01	PPI
MsG0180003919.01	MsG0780038490.01	PPI
MsG0180006148.01	MsG0780038490.01	PPI
MsG0280008656.01	MsG0780038490.01	PPI
MsG0280008691.01	MsG0780038490.01	PPI
MsG0280008706.01	MsG0780038490.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038490.01.T01	MTR_7g056390	93.556	419	26	1	1	419	1	418	0.0	815
MsG0780038490.01.T01	MTR_7g056290	89.810	422	40	1	1	419	1	422	0.0	795
MsG0780038490.01.T01	MTR_3g072470	81.473	421	74	4	1	419	1	419	0.0	697
MsG0780038490.01.T01	MTR_0464s0020	67.217	424	130	5	4	418	6	429	0.0	561
MsG0780038490.01.T01	MTR_2g043410	66.667	417	125	9	8	418	9	417	0.0	541
MsG0780038490.01.T01	MTR_7g056003	66.346	416	122	7	9	418	5	408	0.0	539
MsG0780038490.01.T01	MTR_2g043400	66.667	417	126	8	8	418	9	418	0.0	536
MsG0780038490.01.T01	MTR_3g437520	64.634	410	129	6	2	401	6	409	0.0	517
MsG0780038490.01.T01	MTR_7g055987	63.056	360	99	6	6	362	4	332	1.66e-152	436
MsG0780038490.01.T01	MTR_7g056260	56.548	336	115	9	10	334	2	317	1.49e-117	345

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038490.01.T01	AT3G23880	27.778	360	189	14	22	356	17	330	5.58e-18	85.5
MsG0780038490.01.T01	AT3G10430	25.275	273	137	11	22	278	8	229	2.46e-13	71.6

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Find 104 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGACCGAATATGAT+TGG	0.414146	7:-47637557	MsG0780038490.01.T01:CDS
AAAGGAACAACGGGAAAATT+TGG	0.211079	7:+47637660	None:intergenic
AAATGACACTTATAAAGTGG+TGG	0.582336	7:-47637742	MsG0780038490.01.T01:CDS
AAATGGTACGACACTGCAAT+TGG	0.429213	7:+47638055	None:intergenic
AACACATTATCTGAAGAATT+AGG	0.251666	7:-47637810	MsG0780038490.01.T01:CDS
AAGAGAAACTTACTCTCAAA+AGG	0.424308	7:+47637047	None:intergenic
AATAATGGTGTGTATGTCAG+TGG	0.709344	7:-47637603	MsG0780038490.01.T01:CDS
AATACGTAGTAAGGATCATT+AGG	0.401013	7:+47637954	None:intergenic
AATAGGTGGTAAGGTTCGAA+GGG	0.639975	7:+47637993	None:intergenic
AATATCATTCCAATCATATT+CGG	0.387045	7:+47637548	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACACTTATAAAGTGG+TGG	-	Chr7:47637723-47637742	MsG0780038490.01.T01:CDS	30.0%
AATACGTAGTAAGGATCATT+AGG	+	Chr7:47637514-47637533	None:intergenic	30.0%
AATGATCCTTACTACGTATT+GGG	-	Chr7:47637514-47637533	MsG0780038490.01.T01:CDS	30.0%
ATATTACCCAATACGTAGTA+AGG	+	Chr7:47637523-47637542	None:intergenic	30.0%
CTCAATATCAAAAGGAACAA+CGG	+	Chr7:47637818-47637837	None:intergenic	30.0%
TAATGATCCTTACTACGTAT+TGG	-	Chr7:47637513-47637532	MsG0780038490.01.T01:CDS	30.0%
TACACACCATTATTGACATA+TGG	+	Chr7:47637856-47637875	None:intergenic	30.0%
TCAAATGTGTTTGCAAATCA+TGG	-	Chr7:47637281-47637300	MsG0780038490.01.T01:CDS	30.0%
TCAATATCAAAAGGAACAAC+GGG	+	Chr7:47637817-47637836	None:intergenic	30.0%
TGTCATCCATATGTCAATAA+TGG	-	Chr7:47637847-47637866	MsG0780038490.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	47637062	47638425	47637062	ID=MsG0780038490.01;Name=MsG0780038490.01
Chr7	mRNA	47637062	47638425	47637062	ID=MsG0780038490.01.T01;Parent=MsG0780038490.01;Name=MsG0780038490.01.T01;_AED=0.32;_eAED=0.32;_QI=104\|0\|0.5\|1\|0\|0.5\|2\|0\|419
Chr7	exon	47637062	47638425	47637062	ID=MsG0780038490.01.T01:exon:5002;Parent=MsG0780038490.01.T01
Chr7	five_prime_UTR	47638322	47638425	47638322	ID=MsG0780038490.01.T01:five_prime_utr;Parent=MsG0780038490.01.T01
Chr7	CDS	47637062	47638321	47637062	ID=MsG0780038490.01.T01:cds;Parent=MsG0780038490.01.T01

Gene Sequence

>MsG0780038490.01.T01

ATGACGAATTCCGATCCTCCGCCGCATTCAAACGGTGGCGCTCCAACATCTCTCCTCCTCGATGAACTCATCGTGGAAATCCTGTCACGCCTTCCTGTCAAAACTCTCATGCAATTCAAATGTGTTTGCAAATCATGGCAAACCCTAATTTCTCATGATCCTTCCTTCGCCAAACTCCATCTTCACCGATCGCCGCGGAACACACACCTCGCACTGGTTTCAGACCTGTCGTCTGACGATGAGTCCAATTGCAGTGTCGTACCATTTCCCGTTAGTCATTTGCTCGAGGCTCCGTTAACCATCACACCCTTCGAACCTTACCACCTATTGAGGAATGTCGGCATTCCTAATGATCCTTACTACGTATTGGGTAATATGGATTGTTGTATCATCGTTGGTTCCTGCAATGGATTGCTCTGTTTACGCTGTTATTCTTACATCTACGAGGAGGAAGAACATGATTGGTTTCGTTTTTGGAACCCAGCCACAAACACATTATCTGAAGAATTAGGGTGTTTAAACGAGTTTTTCAGGCTAACATTTGGATATGATATTTCAAATGACACTTATAAAGTGGTGGCCTTTTCTGCAGACCAGGTAAAAGTTTTTAGTTTGAGTGATAATGTTTGGAGAGATATTCCAAATTTTCCCGTTGTTCCTTTTGATATTGAGGCTAGTCGTTGTCATCCATATGTCAATAATGGTGTGTATGTCAGTGGCACTATTAATTGGTTGACCATTCAAAATAAGACCGAATATGATTGGAATGATATTTCAATCGATCAATTTCTCATCCTCTCACTTGATCTGACTACCGAGACGTACCAACATTTGCGGCCGCCTCAAGGATTTGTTGAAGTACCACCTGTTGATCCAGCTGTTACTGTATTGATGGATTGTCTATGTTTTTCTCACCGTTACAAGGAGACCCATTTTGTTTTATGGTTGATGATGGAGTACGGAGTTCAAGAGTCTTGGACTCAATTCCTCAAAATTAGTTTTCAGGACCTTCAAATTGATTATGGCATTAGTGATTCACTGGACTATGGTTCTCAATTGTACTTGTATCCATTGCACCTTTCTGAGAGTGACAACACACTTATAATGGCAAGCAATCAACAAGGCTATGATGGTTATGACAACCATGCAATTATCTATAATTGGAGAGATAAAACGGTAGAGCAAATTACATCTGTCGACAATGAAATATTGTGGTTTCATACTAAGGATTATGTTGAAAGCTTAGTTTCAACCTTTTGA

Protein sequence

>MsG0780038490.01.T01

MTNSDPPPHSNGGAPTSLLLDELIVEILSRLPVKTLMQFKCVCKSWQTLISHDPSFAKLHLHRSPRNTHLALVSDLSSDDESNCSVVPFPVSHLLEAPLTITPFEPYHLLRNVGIPNDPYYVLGNMDCCIIVGSCNGLLCLRCYSYIYEEEEHDWFRFWNPATNTLSEELGCLNEFFRLTFGYDISNDTYKVVAFSADQVKVFSLSDNVWRDIPNFPVVPFDIEASRCHPYVNNGVYVSGTINWLTIQNKTEYDWNDISIDQFLILSLDLTTETYQHLRPPQGFVEVPPVDPAVTVLMDCLCFSHRYKETHFVLWLMMEYGVQESWTQFLKISFQDLQIDYGISDSLDYGSQLYLYPLHLSESDNTLIMASNQQGYDGYDNHAIIYNWRDKTVEQITSVDNEILWFHTKDYVESLVSTF*