AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041288.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041288.01.T01 MTR_7g108580 97.931 145 3 0 1 145 1 145 1.91e-98 294
MsG0780041288.01.T01 MTR_7g108580 99.324 148 1 0 228 375 146 293 3.01e-98 294
MsG0780041288.01.T01 MTR_7g076680 44.173 369 120 8 4 370 62 346 1.26e-85 264
MsG0780041288.01.T01 MTR_7g076680 44.173 369 120 8 4 370 79 363 2.09e-85 264
MsG0780041288.01.T01 MTR_7g076680 44.173 369 120 8 4 370 58 342 3.75e-85 262
MsG0780041288.01.T01 MTR_1g030450 66.438 146 49 0 225 370 211 356 3.52e-57 191
MsG0780041288.01.T01 MTR_1g030450 56.250 144 63 0 2 145 70 213 1.55e-52 178
MsG0780041288.01.T01 MTR_3g007490 54.483 145 65 1 228 372 217 360 4.71e-47 164
MsG0780041288.01.T01 MTR_3g007490 47.917 144 75 0 2 145 73 216 1.71e-42 152
MsG0780041288.01.T01 MTR_3g007580 41.935 93 47 2 228 319 32 118 2.04e-16 75.5
MsG0780041288.01.T01 MTR_2g435250 65.517 58 17 2 188 245 18 72 2.38e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041288.01.T01 AT3G12290 82.517 143 25 0 228 370 153 295 1.80e-77 241
MsG0780041288.01.T01 AT3G12290 75.000 144 36 0 2 145 9 152 2.95e-75 235
MsG0780041288.01.T01 AT4G00620 67.832 143 46 0 228 370 213 355 5.45e-63 206
MsG0780041288.01.T01 AT4G00620 60.927 151 57 1 2 150 69 219 7.93e-59 195
MsG0780041288.01.T01 AT2G38660 66.434 143 48 0 228 370 207 349 2.33e-57 191
MsG0780041288.01.T01 AT2G38660 56.338 142 62 0 4 145 65 206 3.16e-51 175
MsG0780041288.01.T01 AT2G38660 66.434 143 48 0 228 370 207 349 2.33e-57 191
MsG0780041288.01.T01 AT2G38660 56.338 142 62 0 4 145 65 206 3.16e-51 175
MsG0780041288.01.T01 AT4G00600 62.238 143 54 0 228 370 163 305 1.04e-56 188
MsG0780041288.01.T01 AT4G00600 45.695 151 44 2 2 150 55 169 3.12e-33 126
MsG0780041288.01.T01 AT2G38660 55.556 144 64 0 2 145 63 206 1.83e-52 175
MsG0780041288.01.T01 AT2G38660 56.338 142 62 0 4 145 65 206 4.05e-51 174
MsG0780041288.01.T01 AT2G38660 63.063 111 41 0 228 338 207 317 1.96e-39 143
MsG0780041288.01.T01 AT2G38660 49.495 99 50 0 4 102 65 163 1.12e-25 102
MsG0780041288.01.T01 AT2G38660 49.495 99 50 0 4 102 65 163 1.12e-25 102
MsG0780041288.01.T01 AT2G38660 49.495 99 50 0 4 102 65 163 1.12e-25 102
MsG0780041288.01.T01 AT2G38660 49.495 99 50 0 4 102 65 163 1.12e-25 102

Find 117 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTATGTGCTATACTTTAT+TGG 0.095499 7:+89217650 MsG0780041288.01.T01:three_prime_UTR
AACCAAACACAGTGTTAAAT+TGG 0.125596 7:+89213509 None:intergenic
CTCTTCATTCTCAAATCTTT+TGG 0.143460 7:+89214254 MsG0780041288.01.T01:CDS
TTTCTCTTCATTTATATGTT+TGG 0.237367 7:-89214113 None:intergenic
TTCTCTTCATTTATATGTTT+GGG 0.275577 7:-89214112 None:intergenic
GAGAAAAGCTTGCGCTGATT+TGG 0.292482 7:+89213881 MsG0780041288.01.T01:CDS
CATCATCATCTTCAGGTTGC+TGG 0.330420 7:+89213801 MsG0780041288.01.T01:intron
GGTTGGATTACTCCTGTTCC+TGG 0.334532 7:+89217365 MsG0780041288.01.T01:CDS
CTTTATTGGAATATTGCTTT+TGG 0.335457 7:+89217664 MsG0780041288.01.T01:three_prime_UTR
CTTTATTGGAATATTGCTTT+TGG 0.335457 7:+89217876 MsG0780041288.01.T01:intron
ACGAAGTGGTGTAAGTATAA+AGG 0.338275 7:+89216533 MsG0780041288.01.T01:CDS
CACGGCTTTGCCGTCAATTA+CGG 0.340063 7:-89213632 None:intergenic
AGAAAAGCTTGCGCTGATTT+GGG 0.341343 7:+89213882 MsG0780041288.01.T01:CDS
AGCAACATTGTGACTGTCAT+TGG 0.347400 7:-89217398 None:intergenic
CAACTAGGAAGGCAGGTTAT+AGG 0.352622 7:+89217300 MsG0780041288.01.T01:CDS
GAGGAAGCATCTAAAGTTGC+TGG 0.352957 7:+89217344 MsG0780041288.01.T01:CDS
CGAAGTGGTGTAAGTATAAA+GGG 0.365346 7:+89216534 MsG0780041288.01.T01:CDS
GAATGAAGAGCATTTACTTT+GGG 0.374429 7:-89214241 None:intergenic
TTCAAAAGCAGTAATGAAAC+TGG 0.393159 7:-89216600 None:intergenic
AGCATTTACTTTGGGAGTGC+AGG 0.399690 7:-89214233 None:intergenic
TCAGCTTCGGAAATTTGTTC+AGG 0.400499 7:-89213930 None:intergenic
GCTTCACGTATGATGTCTTC+TGG 0.403074 7:-89216666 None:intergenic
TTATATGTGTGCAGGTATAT+TGG 0.405081 7:+89214075 MsG0780041288.01.T01:intron
TTCAACTCAATTCTATCAAT+AGG 0.415736 7:+89214278 MsG0780041288.01.T01:CDS
GAGAGGGTCTCTGCCTTTCA+TGG 0.418461 7:-89214203 None:intergenic
ACGTATTCTATAAAATTGTA+AGG 0.419672 7:+89217557 MsG0780041288.01.T01:three_prime_UTR
AAGGCAGGTTATAGGCTTGT+TGG 0.427901 7:+89217308 MsG0780041288.01.T01:CDS
TATAACCTGCCTTCCTAGTT+GGG 0.428149 7:-89217298 None:intergenic
CTATAACCTGCCTTCCTAGT+TGG 0.431628 7:-89217299 None:intergenic
ATGCTTGATTACTTCAGCTT+CGG 0.434782 7:-89213943 None:intergenic
CGCAACCTTCTCCGATCAAA+TGG 0.435703 7:+89213606 MsG0780041288.01.T01:exon
TTTCTTAGATCAAGGGAAGT+TGG 0.440672 7:+89217225 MsG0780041288.01.T01:intron
GTGCCACCGTCGCCAGGTCT+CGG 0.442318 7:+89215788 MsG0780041288.01.T01:CDS
GTGTAAGTATAAAGGGGAAA+AGG 0.444068 7:+89216541 MsG0780041288.01.T01:CDS
CGTACCGCCTCAGATTGTTC+AGG 0.451345 7:-89215875 None:intergenic
AATGTTGCTGAAGAATACTT+TGG 0.453034 7:+89217412 MsG0780041288.01.T01:CDS
GGACCTACACCTCCAGGAAC+AGG 0.460733 7:-89217377 None:intergenic
GGACTTGCAGTGGTGATAGT+AGG 0.466821 7:+89213822 MsG0780041288.01.T01:CDS
AGAATGAAGAGCATTTACTT+TGG 0.470770 7:-89214242 None:intergenic
AATTACGGTGGCCATTTGAT+CGG 0.474921 7:-89213617 None:intergenic
AGCCTTGAGAAGGATGTTGA+TGG 0.475914 7:+89214151 MsG0780041288.01.T01:CDS
CGTATCCTCTCTGAGAAATA+CGG 0.476330 7:+89213691 MsG0780041288.01.T01:CDS
TATCAATAGGAAAATAATCC+AGG 0.479901 7:+89214291 MsG0780041288.01.T01:CDS
AGTGACTCACCATGTACATT+GGG 0.481285 7:-89213987 None:intergenic
ACCAAACACAGTGTTAAATT+GGG 0.483202 7:+89213510 None:intergenic
GATATTGTTATTGCAGCAGC+AGG 0.488835 7:+89216690 MsG0780041288.01.T01:CDS
ACATCTATTACTGCAGCTCC+AGG 0.491120 7:-89217254 None:intergenic
CGCCTCAGATTGTTCAGGAC+AGG 0.496047 7:-89215870 None:intergenic
ACTCCTGTTCCTGGAGGTGT+AGG 0.496506 7:+89217374 MsG0780041288.01.T01:CDS
TGTTATTGCAGCAGCAGGAC+AGG 0.498986 7:+89216695 MsG0780041288.01.T01:CDS
CGTATTTCTCAGAGAGGATA+CGG 0.500459 7:-89213690 None:intergenic
GATAGAGTGCCACCGTCGCC+AGG 0.501130 7:+89215782 MsG0780041288.01.T01:CDS
ATCGGCAAGCTTGCCATGAA+AGG 0.510148 7:+89214190 MsG0780041288.01.T01:CDS
AGAAGAGAAGAGGATGAAGA+AGG 0.510266 7:+89215719 MsG0780041288.01.T01:CDS
CGAAGGCATGGTTGAGGTGA+CGG 0.512330 7:-89215826 None:intergenic
GGCTTTCATCCTTTGAACAT+CGG 0.514273 7:+89214172 MsG0780041288.01.T01:CDS
TCATTTATATGTTTGGGCAG+TGG 0.514441 7:-89214106 None:intergenic
TGTAAGTATAAAGGGGAAAA+GGG 0.521694 7:+89216542 MsG0780041288.01.T01:CDS
GACTGAAATCAGCCTTGAGA+AGG 0.525446 7:+89214141 MsG0780041288.01.T01:CDS
GACTTGCAGTGGTGATAGTA+GGG 0.525562 7:+89213823 MsG0780041288.01.T01:CDS
GGCATGGTTGAGGTGACGGC+AGG 0.535971 7:-89215822 None:intergenic
GGGAAAAGGGCAGTTGTGGT+TGG 0.536435 7:+89216555 MsG0780041288.01.T01:CDS
TTGGTAGAAGCAACATAGTC+GGG 0.537576 7:+89216574 MsG0780041288.01.T01:CDS
AAATTGAAGAACACGGTCAC+AGG 0.537763 7:+89215746 MsG0780041288.01.T01:CDS
GCATTTACTTTGGGAGTGCA+GGG 0.540237 7:-89214232 None:intergenic
AGCAGCAGGACAGGCAAAGA+TGG 0.543320 7:+89216704 MsG0780041288.01.T01:CDS
GGTGGCCATTTGATCGGAGA+AGG 0.543368 7:-89213611 None:intergenic
ATGGTTGAGGTGACGGCAGG+CGG 0.544059 7:-89215819 None:intergenic
GCAAGCTTGCCGATGTTCAA+AGG 0.547348 7:-89214181 None:intergenic
CTTCGGAAATTTGTTCAGGA+AGG 0.547633 7:-89213926 None:intergenic
AGATCGGATTGTTTGTGCCA+CGG 0.550515 7:-89213650 None:intergenic
GATGACCCAACTAGGAAGGC+AGG 0.556133 7:+89217293 MsG0780041288.01.T01:CDS
AAGCATCTAAAGTTGCTGGT+TGG 0.557994 7:+89217348 MsG0780041288.01.T01:CDS
CAAGGCACACGGCGAAGGCA+TGG 0.559191 7:-89215838 None:intergenic
ATTCTGTTGATGACCCAACT+AGG 0.559417 7:+89217285 MsG0780041288.01.T01:CDS
GTCATTGGACCTACACCTCC+AGG 0.563478 7:-89217383 None:intergenic
AAGTGACTCACCATGTACAT+TGG 0.565737 7:-89213988 None:intergenic
AAAGGGGAAAAGGGCAGTTG+TGG 0.567603 7:+89216551 MsG0780041288.01.T01:CDS
TCAGGTTGCTGGACTTGCAG+TGG 0.572590 7:+89213812 MsG0780041288.01.T01:intron
CAAATGGCCACCGTAATTGA+CGG 0.574064 7:+89213622 MsG0780041288.01.T01:exon
GTTGGTAGAAGCAACATAGT+CGG 0.574369 7:+89216573 MsG0780041288.01.T01:CDS
AGCCATCAACATCCTTCTCA+AGG 0.583414 7:-89214153 None:intergenic
CCTCGTCGGCGATTTCAGAT+CGG 0.583482 7:-89213666 None:intergenic
AAGGGAAGTTGGATAAAACC+TGG 0.587815 7:+89217236 MsG0780041288.01.T01:CDS
CGGTTGCAGAAGAAGAGAAG+AGG 0.592925 7:+89215709 MsG0780041288.01.T01:intron
ACACGGCGAAGGCATGGTTG+AGG 0.597922 7:-89215832 None:intergenic
GGCAAGTGAGACAAGGCACA+CGG 0.597948 7:-89215849 None:intergenic
TGTTGATGACCCAACTAGGA+AGG 0.598349 7:+89217289 MsG0780041288.01.T01:CDS
GGAGTGCAGGGAACAAAGAG+AGG 0.599700 7:-89214220 None:intergenic
TGCCTGTCCTGAACAATCTG+AGG 0.600852 7:+89215868 MsG0780041288.01.T01:CDS
CGTATTCTATAAAATTGTAA+GGG 0.603359 7:+89217558 MsG0780041288.01.T01:three_prime_UTR
GCGGAGTTACGACCGAGACC+TGG 0.607008 7:-89215800 None:intergenic
TTCTATAAAATTGTAAGGGT+AGG 0.607410 7:+89217562 MsG0780041288.01.T01:three_prime_UTR
TAGCACATACAGAGAACAAG+AGG 0.609611 7:-89217639 None:intergenic
GGCTTTGCCGTCAATTACGG+TGG 0.613849 7:-89213629 None:intergenic
TGAGACAAGGCACACGGCGA+AGG 0.616218 7:-89215843 None:intergenic
AACGCTGATCCCAATGTACA+TGG 0.616668 7:+89213978 MsG0780041288.01.T01:CDS
CGACCGAGACCTGGCGACGG+TGG 0.617044 7:-89215791 None:intergenic
CAGGACAGGCAAGTGAGACA+AGG 0.621763 7:-89215856 None:intergenic
CGTAATTGACGGCAAAGCCG+TGG 0.631640 7:+89213633 MsG0780041288.01.T01:CDS
CCGATCTGAAATCGCCGACG+AGG 0.637149 7:+89213666 MsG0780041288.01.T01:CDS
TGGATTACTCCTGTTCCTGG+AGG 0.641207 7:+89217368 MsG0780041288.01.T01:CDS
CCTTGCCGTATTTCTCAGAG+AGG 0.642605 7:-89213696 None:intergenic
CCTCTCTGAGAAATACGGCA+AGG 0.642652 7:+89213696 MsG0780041288.01.T01:CDS
GGAGCTGCAGTAATAGATGT+CGG 0.646250 7:+89217257 MsG0780041288.01.T01:CDS
AAACACAGTGTTAAATTGGG+TGG 0.655440 7:+89213513 None:intergenic
CTGTCCTGAACAATCTGAGG+CGG 0.658080 7:+89215871 MsG0780041288.01.T01:CDS
GAAGTGGTGTAAGTATAAAG+GGG 0.666613 7:+89216535 MsG0780041288.01.T01:CDS
ACTTGTGTGTGAATGAGCAA+TGG 0.673957 7:-89216640 None:intergenic
AGGAAGAAAATTGAAGAACA+CGG 0.680017 7:+89215739 MsG0780041288.01.T01:CDS
AGAGAGGATACGGACCTCGT+CGG 0.680772 7:-89213680 None:intergenic
GAGTGCAGGGAACAAAGAGA+GGG 0.687238 7:-89214219 None:intergenic
CTTGAACTATTGTCACGAAG+TGG 0.690195 7:+89216519 MsG0780041288.01.T01:CDS
AGCACATACAGAGAACAAGA+GGG 0.699285 7:-89217638 None:intergenic
GCACATACAGAGAACAAGAG+GGG 0.710443 7:-89217637 None:intergenic
TCTTAGCAGAAACTGAACTG+AGG 0.714720 7:-89217527 None:intergenic
TTACGACCGAGACCTGGCGA+CGG 0.715843 7:-89215794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAGTTTATAATTATGAA+TGG + Chr7:89214441-89214460 MsG0780041288.01.T01:intron 10.0%
!!! GTTTAATATTATATTTTCAT+AGG + Chr7:89216892-89216911 MsG0780041288.01.T01:intron 10.0%
!!! TCCTTTAATTTTAAATAAAA+GGG + Chr7:89217473-89217492 MsG0780041288.01.T01:three_prime_UTR 10.0%
!!! TTCCTTTAATTTTAAATAAA+AGG + Chr7:89217472-89217491 MsG0780041288.01.T01:three_prime_UTR 10.0%
!! AAAAAATCAATTAAGATTAC+TGG + Chr7:89214493-89214512 MsG0780041288.01.T01:intron 15.0%
!! AAAAATCAATTAAGATTACT+GGG + Chr7:89214494-89214513 MsG0780041288.01.T01:intron 15.0%
!! TTAAATACACTATTTAAAGA+AGG - Chr7:89216469-89216488 None:intergenic 15.0%
!!! TCCCTTTTATTTAAAATTAA+AGG - Chr7:89217477-89217496 None:intergenic 15.0%
!!! TCTTTTTTACTGTATTTATT+TGG + Chr7:89214041-89214060 MsG0780041288.01.T01:intron 15.0%
!!! TTTTTAAAAAAACATAGACT+TGG - Chr7:89216770-89216789 None:intergenic 15.0%
!!! TTTTTGTCAATTTTCAAATT+TGG + Chr7:89216810-89216829 MsG0780041288.01.T01:intron 15.0%
!! AAAATCAATTAAGATTACTG+GGG + Chr7:89214495-89214514 MsG0780041288.01.T01:intron 20.0%
!! AAATGAATGATATATAAGAG+TGG + Chr7:89216959-89216978 MsG0780041288.01.T01:intron 20.0%
!! ACGTATTCTATAAAATTGTA+AGG + Chr7:89217557-89217576 MsG0780041288.01.T01:three_prime_UTR 20.0%
!! ATAAAAAATAAACATGTGAG+TGG - Chr7:89214737-89214756 None:intergenic 20.0%
!! ATTATGAATGGCATAAAAAA+TGG + Chr7:89214453-89214472 MsG0780041288.01.T01:intron 20.0%
!! CGTATTCTATAAAATTGTAA+GGG + Chr7:89217558-89217577 MsG0780041288.01.T01:three_prime_UTR 20.0%
!! TTCTCTTCATTTATATGTTT+GGG - Chr7:89214115-89214134 None:intergenic 20.0%
!! TTTCTCTTCATTTATATGTT+TGG - Chr7:89214116-89214135 None:intergenic 20.0%
!!! AAATAGTTTTTAAATGGTAG+CGG + Chr7:89216865-89216884 MsG0780041288.01.T01:intron 20.0%
!!! AATTTTCTAAAACTGTGTTT+TGG - Chr7:89217126-89217145 None:intergenic 20.0%
!!! ACGCATAAATAGTTTTTAAA+TGG + Chr7:89216859-89216878 MsG0780041288.01.T01:intron 20.0%
!!! ATTTACTTTTTCTTAGATCA+AGG + Chr7:89217217-89217236 MsG0780041288.01.T01:intron 20.0%
!!! TTCTTCTTTTTATAACAAAG+AGG - Chr7:89217794-89217813 None:intergenic 20.0%
!!! TTTACTTTTTCTTAGATCAA+GGG + Chr7:89217218-89217237 MsG0780041288.01.T01:intron 20.0%
!!! TTTTAAGTGATTAAACTTTG+CGG + Chr7:89216364-89216383 MsG0780041288.01.T01:intron 20.0%
!!! TTTTGAACTACTTTCTTTAA+AGG + Chr7:89215208-89215227 MsG0780041288.01.T01:intron 20.0%
! AAGTATGTGCTATACTTTAT+TGG + Chr7:89217862-89217881 MsG0780041288.01.T01:intron 25.0%
! AATAAAGTATAGCACATACT+TGG - Chr7:89217863-89217882 None:intergenic 25.0%
! ACAACATCAAAATCATATTC+CGG + Chr7:89216002-89216021 MsG0780041288.01.T01:intron 25.0%
! AGAAGAAATAGGTTATATAC+AGG - Chr7:89217750-89217769 None:intergenic 25.0%
! ATAAAGTATAGCACATACTT+GGG - Chr7:89217862-89217881 None:intergenic 25.0%
! ATTGAGAAGATTAATAACAG+TGG - Chr7:89217185-89217204 None:intergenic 25.0%
! TATCAATAGGAAAATAATCC+AGG + Chr7:89214291-89214310 MsG0780041288.01.T01:CDS 25.0%
! TTAAGTGATTAAACTTTGCA+GGG - Chr7:89215312-89215331 None:intergenic 25.0%
! TTAGCTCAATATAATTGATG+TGG - Chr7:89216941-89216960 None:intergenic 25.0%
! TTCAACTCAATTCTATCAAT+AGG + Chr7:89214278-89214297 MsG0780041288.01.T01:CDS 25.0%
! TTCTATAAAATTGTAAGGGT+AGG + Chr7:89217562-89217581 MsG0780041288.01.T01:three_prime_UTR 25.0%
! TTGAGAAGATTAATAACAGT+GGG - Chr7:89217184-89217203 None:intergenic 25.0%
! TTTAAGTGATTAAACTTTGC+AGG - Chr7:89216384-89216365 None:intergenic 25.0%
! TTTAAGTGATTAAACTTTGC+GGG + Chr7:89216365-89216384 MsG0780041288.01.T01:intron 25.0%
!! CTTTATTGGAATATTGCTTT+TGG + Chr7:89217664-89217683 MsG0780041288.01.T01:three_prime_UTR 25.0%
!! TGTCAATTTTCAAATTTGGA+TGG + Chr7:89216814-89216833 MsG0780041288.01.T01:intron 25.0%
!! TTTTGCTAGCTAAATTAGAA+CGG + Chr7:89214806-89214825 MsG0780041288.01.T01:intron 25.0%
AAATTTGGATGGTTCTTTCT+TGG + Chr7:89216825-89216844 MsG0780041288.01.T01:intron 30.0%
AAGATGATGAAGGAATGATT+GGG - Chr7:89213729-89213748 None:intergenic 30.0%
AATATCATTGAGAGCAACAA+CGG - Chr7:89217061-89217080 None:intergenic 30.0%
AATGTTGCTGAAGAATACTT+TGG + Chr7:89217412-89217431 MsG0780041288.01.T01:CDS 30.0%
ACAAAAACTGCACATATACT+AGG - Chr7:89216797-89216816 None:intergenic 30.0%
ACGTCATCAAATTAGCAAAA+TGG + Chr7:89215364-89215383 MsG0780041288.01.T01:intron 30.0%
AGAAAAGAAAATGATAGCAG+GGG - Chr7:89215453-89215472 None:intergenic 30.0%
AGAGAAAAGAAAATGATAGC+AGG - Chr7:89215455-89215474 None:intergenic 30.0%
AGATGATTGTGCAAAATGAA+TGG + Chr7:89216108-89216127 MsG0780041288.01.T01:intron 30.0%
AGGAAGAAAATTGAAGAACA+CGG + Chr7:89215739-89215758 MsG0780041288.01.T01:CDS 30.0%
ATCAAATTAGCAAAATGGCA+TGG + Chr7:89215369-89215388 MsG0780041288.01.T01:intron 30.0%
ATTTCACAGACAAACATGAA+AGG - Chr7:89216293-89216312 None:intergenic 30.0%
CAATATAATTGATGTGGAAC+TGG - Chr7:89216935-89216954 None:intergenic 30.0%
CCATGATTGAAGAATAAACA+TGG - Chr7:89216220-89216239 None:intergenic 30.0%
CCATGTTTATTCTTCAATCA+TGG + Chr7:89216217-89216236 MsG0780041288.01.T01:intron 30.0%
CTGATTGAATTTGTAGTGTT+TGG + Chr7:89214403-89214422 MsG0780041288.01.T01:intron 30.0%
CTGTATGTGCTATACTTTAT+TGG + Chr7:89217650-89217669 MsG0780041288.01.T01:three_prime_UTR 30.0%
GAGAAAAGAAAATGATAGCA+GGG - Chr7:89215454-89215473 None:intergenic 30.0%
GAGAAAGAAGATGAAATCAA+GGG + Chr7:89216258-89216277 MsG0780041288.01.T01:intron 30.0%
GATATTCCTATAAACGACAT+TGG + Chr7:89217075-89217094 MsG0780041288.01.T01:intron 30.0%
GCTCTGTTTGGTAAAAATAA+TGG + Chr7:89214313-89214332 MsG0780041288.01.T01:intron 30.0%
GTAGTGTTTGGTAAAATTAG+CGG + Chr7:89214415-89214434 MsG0780041288.01.T01:intron 30.0%
TAAGACATAAGCTATAAGCT+CGG + Chr7:89214676-89214695 MsG0780041288.01.T01:intron 30.0%
TAAGTGATTAAACTTTGCAG+GGG - Chr7:89215311-89215330 None:intergenic 30.0%
TACTGTATTGTAGATTCAAG+AGG - Chr7:89215591-89215610 None:intergenic 30.0%
TAGTGTTTGGTAAAATTAGC+GGG + Chr7:89214416-89214435 MsG0780041288.01.T01:intron 30.0%
TCAAATTAGCAAAATGGCAT+GGG + Chr7:89215370-89215389 MsG0780041288.01.T01:intron 30.0%
TCATTATCATCATCATCTTC+AGG + Chr7:89213794-89213813 MsG0780041288.01.T01:intron 30.0%
TGTAAGTATAAAGGGGAAAA+GGG + Chr7:89216542-89216561 MsG0780041288.01.T01:CDS 30.0%
TGTCTTATAATCTCGTATGT+TGG - Chr7:89214663-89214682 None:intergenic 30.0%
TTAAGTGATTAAACTTTGCG+GGG + Chr7:89216366-89216385 MsG0780041288.01.T01:intron 30.0%
TTATATGTGTGCAGGTATAT+TGG + Chr7:89214075-89214094 MsG0780041288.01.T01:intron 30.0%
TTCAAAAGCAGTAATGAAAC+TGG - Chr7:89216603-89216622 None:intergenic 30.0%
TTCTTTGCAAGATGAATTAG+TGG + Chr7:89215663-89215682 MsG0780041288.01.T01:intron 30.0%
TTTGCTAGCTAAATTAGAAC+GGG + Chr7:89214807-89214826 MsG0780041288.01.T01:intron 30.0%
! CATATACCAATGTCGTTTAT+AGG - Chr7:89217084-89217103 None:intergenic 30.0%
! CTCTTCATTCTCAAATCTTT+TGG + Chr7:89214254-89214273 MsG0780041288.01.T01:CDS 30.0%
! TACATATGCTACTTGTATTC+AGG + Chr7:89216491-89216510 MsG0780041288.01.T01:intron 30.0%
! TCATTTTGCACAATCATCTT+CGG - Chr7:89216107-89216126 None:intergenic 30.0%
! TTAATGCACAGTTTTCATTG+AGG + Chr7:89214891-89214910 MsG0780041288.01.T01:intron 30.0%
! TTTTATAACAAAGAGGTTGC+AGG - Chr7:89217787-89217806 None:intergenic 30.0%
!! AAGCTAACTATAGTTGATAG+CGG + Chr7:89214371-89214390 MsG0780041288.01.T01:intron 30.0%
!! AGAATGAAGAGCATTTACTT+TGG - Chr7:89214245-89214264 None:intergenic 30.0%
!! GAATGAAGAGCATTTACTTT+GGG - Chr7:89214244-89214263 None:intergenic 30.0%
!! GTAAAACAGATTGATGATGA+TGG + Chr7:89216179-89216198 MsG0780041288.01.T01:intron 30.0%
!!! ACTCAAGTTTTAAACTTGAG+TGG + Chr7:89216992-89217011 MsG0780041288.01.T01:intron 30.0%
!!! ATTTTGCTAATTTGATGACG+TGG - Chr7:89215365-89215384 None:intergenic 30.0%
AAAATAATCCAGGCTCTGTT+TGG + Chr7:89214301-89214320 MsG0780041288.01.T01:intron 35.0%
AAGAAGGAAGAAGAAGGTAA+TGG - Chr7:89215493-89215512 None:intergenic 35.0%
ACGAAGTGGTGTAAGTATAA+AGG + Chr7:89216533-89216552 MsG0780041288.01.T01:CDS 35.0%
AGAAGAAAGAAGGAAGAAGA+AGG - Chr7:89215499-89215518 None:intergenic 35.0%
ATACTTTGCTTAGTCAACGA+GGG - Chr7:89215410-89215429 None:intergenic 35.0%
ATGCTTGATTACTTCAGCTT+CGG - Chr7:89213946-89213965 None:intergenic 35.0%
CAAAGAATCAAATCCACACT+TGG - Chr7:89215650-89215669 None:intergenic 35.0%
CGAAGTGGTGTAAGTATAAA+GGG + Chr7:89216534-89216553 MsG0780041288.01.T01:CDS 35.0%
GAAAACTGTGCATTAATGAC+AGG - Chr7:89214887-89214906 None:intergenic 35.0%
GAAAGTGACAATTACCAAAC+AGG + Chr7:89214626-89214645 MsG0780041288.01.T01:intron 35.0%
GAAGATGATGAAGGAATGAT+TGG - Chr7:89213730-89213749 None:intergenic 35.0%
GAAGTGGTGTAAGTATAAAG+GGG + Chr7:89216535-89216554 MsG0780041288.01.T01:CDS 35.0%
GGAGAAAGAAGATGAAATCA+AGG + Chr7:89216257-89216276 MsG0780041288.01.T01:intron 35.0%
GGTGTAAAACAGATTGATGA+TGG + Chr7:89216155-89216174 MsG0780041288.01.T01:intron 35.0%
GTGCAAAATGAATGGTGAAT+GGG + Chr7:89216116-89216135 MsG0780041288.01.T01:intron 35.0%
GTGTAAGTATAAAGGGGAAA+AGG + Chr7:89216541-89216560 MsG0780041288.01.T01:CDS 35.0%
TAAACTTGAGTGGAGATATG+CGG + Chr7:89217002-89217021 MsG0780041288.01.T01:intron 35.0%
TAAGTGATTAAACTTTGCGG+GGG + Chr7:89216367-89216386 MsG0780041288.01.T01:intron 35.0%
TAGCTAAATTAGAACGGGAT+AGG + Chr7:89214812-89214831 MsG0780041288.01.T01:intron 35.0%
TCATTTATATGTTTGGGCAG+TGG - Chr7:89214109-89214128 None:intergenic 35.0%
TGCAAGATGAATTAGTGGTT+GGG + Chr7:89215668-89215687 MsG0780041288.01.T01:intron 35.0%
TGTAATTGTGCGTTCTTGAT+CGG - Chr7:89215182-89215201 None:intergenic 35.0%
TGTGCAAAATGAATGGTGAA+TGG + Chr7:89216115-89216134 MsG0780041288.01.T01:intron 35.0%
TTGCAAGATGAATTAGTGGT+TGG + Chr7:89215667-89215686 MsG0780041288.01.T01:intron 35.0%
TTTCTTAGATCAAGGGAAGT+TGG + Chr7:89217225-89217244 MsG0780041288.01.T01:intron 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + Chr7:89216393-89216412 MsG0780041288.01.T01:intron 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - Chr7:89216412-89216393 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + Chr7:89216394-89216413 MsG0780041288.01.T01:intron 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - Chr7:89216413-89216394 None:intergenic 35.0%
! GTTTTTCGTCCCTGTAAATA+GGG - Chr7:89216437-89216456 None:intergenic 35.0%
! TGAAATCGTGTTGCAGTTTT+CGG + Chr7:89216056-89216075 MsG0780041288.01.T01:intron 35.0%
! TGTTGGAGATGTAGATTTTG+AGG + Chr7:89217325-89217344 MsG0780041288.01.T01:CDS 35.0%
! TGTTTTTCGTCCCTGTAAAT+AGG - Chr7:89216438-89216457 None:intergenic 35.0%
! TTTTTCGTCCCTGTAAATAG+GGG - Chr7:89216436-89216455 None:intergenic 35.0%
!! CAGATGTTAATTTGATGACG+TGG + Chr7:89216313-89216332 MsG0780041288.01.T01:intron 35.0%
!! GCTCACAAACTAGCTTATTT+TGG + Chr7:89214339-89214358 MsG0780041288.01.T01:intron 35.0%
!! GTTTGTTGTTATATGTGTGC+AGG + Chr7:89214067-89214086 MsG0780041288.01.T01:intron 35.0%
!! TATTTTTACCAAACAGAGCC+TGG - Chr7:89214312-89214331 None:intergenic 35.0%
!! TGGTTGGGTTTTGATGTTTT+GGG + Chr7:89215683-89215702 MsG0780041288.01.T01:intron 35.0%
!!! CTAGCTTATTTTGGATGACT+TGG + Chr7:89214348-89214367 MsG0780041288.01.T01:intron 35.0%
!!! CTTTCGATGATGTTGTTTTG+CGG - Chr7:89216031-89216050 None:intergenic 35.0%
!!! TAACAGTGGGCTATATTTTC+TGG - Chr7:89217171-89217190 None:intergenic 35.0%
AAAAAGATCAAGAGCAGGGA+AGG - Chr7:89217617-89217636 None:intergenic 40.0%
AAATGACTCTTCGCATGAGT+AGG - Chr7:89215007-89215026 None:intergenic 40.0%
AAATTGAAGAACACGGTCAC+AGG + Chr7:89215746-89215765 MsG0780041288.01.T01:CDS 40.0%
AAGGGAAGTTGGATAAAACC+TGG + Chr7:89217236-89217255 MsG0780041288.01.T01:CDS 40.0%
AAGTGACTCACCATGTACAT+TGG - Chr7:89213991-89214010 None:intergenic 40.0%
AATCTCGCGAGAAATTGGAA+GGG - Chr7:89213770-89213789 None:intergenic 40.0%
AATTACGGTGGCCATTTGAT+CGG - Chr7:89213620-89213639 None:intergenic 40.0%
ACTTGTGTGTGAATGAGCAA+TGG - Chr7:89216643-89216662 None:intergenic 40.0%
AGAAGAGAAGAGGATGAAGA+AGG + Chr7:89215719-89215738 MsG0780041288.01.T01:CDS 40.0%
AGCAACATTGTGACTGTCAT+TGG - Chr7:89217401-89217420 None:intergenic 40.0%
AGCACATACAGAGAACAAGA+GGG - Chr7:89217641-89217660 None:intergenic 40.0%
AGTGACTCACCATGTACATT+GGG - Chr7:89213990-89214009 None:intergenic 40.0%
ATCAAGATTGTCAAGAGAGC+TGG - Chr7:89217031-89217050 None:intergenic 40.0%
ATGAGAATCTCGCGAGAAAT+TGG - Chr7:89213775-89213794 None:intergenic 40.0%
ATGGAACACGAGAAAGAAGA+GGG + Chr7:89216236-89216255 MsG0780041288.01.T01:intron 40.0%
ATGGGATTGTAGGACAATGA+AGG + Chr7:89216134-89216153 MsG0780041288.01.T01:intron 40.0%
ATGTGAGTGGAATTCATCGA+GGG - Chr7:89214724-89214743 None:intergenic 40.0%
CATACTTTGCTTAGTCAACG+AGG - Chr7:89215411-89215430 None:intergenic 40.0%
CATAGGAACCTAAGTGTTTG+TGG + Chr7:89216909-89216928 MsG0780041288.01.T01:intron 40.0%
CGTATTTCTCAGAGAGGATA+CGG - Chr7:89213693-89213712 None:intergenic 40.0%
CTTGAACTATTGTCACGAAG+TGG + Chr7:89216519-89216538 MsG0780041288.01.T01:CDS 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG - Chr7:89215299-89215318 None:intergenic 40.0%
GAAGCTTAACAAACCAAGTG+TGG + Chr7:89215634-89215653 MsG0780041288.01.T01:intron 40.0%
GGCTTTCATCCTTTGAACAT+CGG + Chr7:89214172-89214191 MsG0780041288.01.T01:CDS 40.0%
TACAGAGGGGAAGAAGAAAT+AGG - Chr7:89217761-89217780 None:intergenic 40.0%
TAGCACATACAGAGAACAAG+AGG - Chr7:89217642-89217661 None:intergenic 40.0%
TATAACCTGCCTTCCTAGTT+GGG - Chr7:89217301-89217320 None:intergenic 40.0%
TATTGTAACAACCTTCCCAC+AGG - Chr7:89215123-89215142 None:intergenic 40.0%
TCTTAGCAGAAACTGAACTG+AGG - Chr7:89217530-89217549 None:intergenic 40.0%
TGAATGGTGAATGGGATTGT+AGG + Chr7:89216124-89216143 MsG0780041288.01.T01:intron 40.0%
TTAAGCGACCCCTATTTACA+GGG + Chr7:89216425-89216444 MsG0780041288.01.T01:intron 40.0%
TTAGCAAAATGGCATGGGAA+TGG + Chr7:89215375-89215394 MsG0780041288.01.T01:intron 40.0%
TTGGTAGAAGCAACATAGTC+GGG + Chr7:89216574-89216593 MsG0780041288.01.T01:CDS 40.0%
TTTAAGCGACCCCTATTTAC+AGG + Chr7:89216424-89216443 MsG0780041288.01.T01:intron 40.0%
! AAGCATCTAAAGTTGCTGGT+TGG + Chr7:89217348-89217367 MsG0780041288.01.T01:CDS 40.0%
! AAGGAAGAAGAAGGTAATGG+TGG - Chr7:89215490-89215509 None:intergenic 40.0%
! ATTGCTGTTGCTATTGCTGT+TGG - Chr7:89215541-89215560 None:intergenic 40.0%
! CGTATCCTCTCTGAGAAATA+CGG + Chr7:89213691-89213710 MsG0780041288.01.T01:CDS 40.0%
! CTCGTTGACTAAGCAAAGTA+TGG + Chr7:89215409-89215428 MsG0780041288.01.T01:intron 40.0%
! CTTCGGAAATTTGTTCAGGA+AGG - Chr7:89213929-89213948 None:intergenic 40.0%
! GATATTGTTATTGCAGCAGC+AGG + Chr7:89216690-89216709 MsG0780041288.01.T01:CDS 40.0%
! GTTGGTAGAAGCAACATAGT+CGG + Chr7:89216573-89216592 MsG0780041288.01.T01:CDS 40.0%
! GTTTTTCGTCCCTGCAAATA+GGG + Chr7:89215240-89215259 MsG0780041288.01.T01:intron 40.0%
! TCAGCTTCGGAAATTTGTTC+AGG - Chr7:89213933-89213952 None:intergenic 40.0%
! TGTTTTTCGTCCCTGCAAAT+AGG + Chr7:89215239-89215258 MsG0780041288.01.T01:intron 40.0%
! TTTTTCGTCCCTGCAAATAG+GGG + Chr7:89215241-89215260 MsG0780041288.01.T01:intron 40.0%
!! AGAAAAGCTTGCGCTGATTT+GGG + Chr7:89213882-89213901 MsG0780041288.01.T01:CDS 40.0%
!! ATGACGTGGCATTGATTAAC+TGG + Chr7:89216327-89216346 MsG0780041288.01.T01:intron 40.0%
!! ATGACGTGGCATTGATTAAC+TGG - Chr7:89216346-89216327 None:intergenic 40.0%
!! ATTCTGTTGATGACCCAACT+AGG + Chr7:89217285-89217304 MsG0780041288.01.T01:CDS 40.0%
!! CACTTGGTTTGTTAAGCTTC+TGG - Chr7:89215634-89215653 None:intergenic 40.0%
!! GCATTGATTAACTGGGTCAA+GGG + Chr7:89216335-89216354 MsG0780041288.01.T01:intron 40.0%
!! GCATTGATTAACTGGGTCAA+GGG - Chr7:89216354-89216335 None:intergenic 40.0%
!! GCTTTTGAAAGCAGATGCTA+CGG + Chr7:89216614-89216633 MsG0780041288.01.T01:CDS 40.0%
!! GTGGTTGGGTTTTGATGTTT+TGG + Chr7:89215682-89215701 MsG0780041288.01.T01:intron 40.0%
!! TGACGTGGCATTGATTAACT+GGG + Chr7:89216328-89216347 MsG0780041288.01.T01:intron 40.0%
!! TGACGTGGCATTGATTAACT+GGG - Chr7:89216347-89216328 None:intergenic 40.0%
!!! GCTATATTTTCTGGAGTGTG+AGG - Chr7:89217162-89217181 None:intergenic 40.0%
!!! GGTTTTGATGTTTTGGGACA+CGG + Chr7:89215689-89215708 MsG0780041288.01.T01:intron 40.0%
!!! TGATGTTGTTTTGCGGTTAC+CGG - Chr7:89216024-89216043 None:intergenic 40.0%
AACGCTGATCCCAATGTACA+TGG + Chr7:89213978-89213997 MsG0780041288.01.T01:CDS 45.0%
AAGGCAGGTTATAGGCTTGT+TGG + Chr7:89217308-89217327 MsG0780041288.01.T01:CDS 45.0%
ACATCTATTACTGCAGCTCC+AGG - Chr7:89217257-89217276 None:intergenic 45.0%
ACTTTGCGGGGGCAAAAAAA+AGG + Chr7:89216378-89216397 MsG0780041288.01.T01:intron 45.0%
AGATCGGATTGTTTGTGCCA+CGG - Chr7:89213653-89213672 None:intergenic 45.0%
AGCCATCAACATCCTTCTCA+AGG - Chr7:89214156-89214175 None:intergenic 45.0%
AGCCTTGAGAAGGATGTTGA+TGG + Chr7:89214151-89214170 MsG0780041288.01.T01:CDS 45.0%
AGGGGAAAAAGATCAAGAGC+AGG - Chr7:89217622-89217641 None:intergenic 45.0%
ATCGCGAGAGAAGATGATGA+AGG - Chr7:89213739-89213758 None:intergenic 45.0%
ATCTCGCGAGAAATTGGAAG+GGG - Chr7:89213769-89213788 None:intergenic 45.0%
CAAATGGCCACCGTAATTGA+CGG + Chr7:89213622-89213641 MsG0780041288.01.T01:exon 45.0%
CAACTAGGAAGGCAGGTTAT+AGG + Chr7:89217300-89217319 MsG0780041288.01.T01:CDS 45.0%
CATGGAACACGAGAAAGAAG+AGG + Chr7:89216235-89216254 MsG0780041288.01.T01:intron 45.0%
CATGTGAGTGGAATTCATCG+AGG - Chr7:89214725-89214744 None:intergenic 45.0%
CTATAACCTGCCTTCCTAGT+TGG - Chr7:89217302-89217321 None:intergenic 45.0%
GAATCTCGCGAGAAATTGGA+AGG - Chr7:89213771-89213790 None:intergenic 45.0%
GAATTCATCGAGGGTCTGTT+TGG - Chr7:89214715-89214734 None:intergenic 45.0%
GACTGAAATCAGCCTTGAGA+AGG + Chr7:89214141-89214160 MsG0780041288.01.T01:CDS 45.0%
GACTTGCAGTGGTGATAGTA+GGG + Chr7:89213823-89213842 MsG0780041288.01.T01:CDS 45.0%
GCACATACAGAGAACAAGAG+GGG - Chr7:89217640-89217659 None:intergenic 45.0%
GCTTCACGTATGATGTCTTC+TGG - Chr7:89216669-89216688 None:intergenic 45.0%
GGAGCTGCAGTAATAGATGT+CGG + Chr7:89217257-89217276 MsG0780041288.01.T01:CDS 45.0%
GGGGAAAAAGATCAAGAGCA+GGG - Chr7:89217621-89217640 None:intergenic 45.0%
GTATAGCACATACTTGGGCA+TGG - Chr7:89217857-89217876 None:intergenic 45.0%
TGGTTGAGATCGAACCTGTT+TGG - Chr7:89214643-89214662 None:intergenic 45.0%
TTAAGCGACCCCTATTTGCA+GGG - Chr7:89215252-89215271 None:intergenic 45.0%
TTAGTGTTGTGACTGTGTCG+TGG - Chr7:89215970-89215989 None:intergenic 45.0%
TTTAAGCGACCCCTATTTGC+AGG - Chr7:89215253-89215272 None:intergenic 45.0%
! ACAACCTTCCCACAGGTTTT+AGG - Chr7:89215116-89215135 None:intergenic 45.0%
! AGCATTTACTTTGGGAGTGC+AGG - Chr7:89214236-89214255 None:intergenic 45.0%
! CAACCTTCCCACAGGTTTTA+GGG - Chr7:89215115-89215134 None:intergenic 45.0%
! CTGTTGCTATTGCTGTTGGT+GGG - Chr7:89215537-89215556 None:intergenic 45.0%
! GAAGAAGAAGGTAATGGTGG+AGG - Chr7:89215487-89215506 None:intergenic 45.0%
! GCATTTACTTTGGGAGTGCA+GGG - Chr7:89214235-89214254 None:intergenic 45.0%
! TGTGACTGTGTTGACATTGC+CGG - Chr7:89215937-89215956 None:intergenic 45.0%
! TGTTGCTATTGCTGTTGGTG+GGG - Chr7:89215536-89215555 None:intergenic 45.0%
!! AACCTTCCCACAGGTTTTAG+GGG - Chr7:89215114-89215133 None:intergenic 45.0%
!! CATCATCATCTTCAGGTTGC+TGG + Chr7:89213801-89213820 MsG0780041288.01.T01:intron 45.0%
!! GAGAAAAGCTTGCGCTGATT+TGG + Chr7:89213881-89213900 MsG0780041288.01.T01:CDS 45.0%
!! GAGGAAGCATCTAAAGTTGC+TGG + Chr7:89217344-89217363 MsG0780041288.01.T01:CDS 45.0%
!! GGCATTGATTAACTGGGTCA+AGG + Chr7:89216334-89216353 MsG0780041288.01.T01:intron 45.0%
!! GGCATTGATTAACTGGGTCA+AGG - Chr7:89216353-89216334 None:intergenic 45.0%
!! TGTTGATGACCCAACTAGGA+AGG + Chr7:89217289-89217308 MsG0780041288.01.T01:CDS 45.0%
!!! GAAGCTGCTTTTTCCGTCAT+CGG - Chr7:89216085-89216104 None:intergenic 45.0%
!!! ATGTTTATTTTTTATAATAT+AGG + Chr7:89214742-89214761 MsG0780041288.01.T01:intron 5.0%
!!! TGTTTATTTTTTATAATATA+GGG + Chr7:89214743-89214762 MsG0780041288.01.T01:intron 5.0%
AAAGGGGAAAAGGGCAGTTG+TGG + Chr7:89216551-89216570 MsG0780041288.01.T01:CDS 50.0%
ACATTGCCGGCGTTTAAGAG+CGG - Chr7:89215924-89215943 None:intergenic 50.0%
AGAGGTTGCAGGCATTACAG+AGG - Chr7:89217776-89217795 None:intergenic 50.0%
AGGTTGCAGGCATTACAGAG+GGG - Chr7:89217774-89217793 None:intergenic 50.0%
ATCGGCAAGCTTGCCATGAA+AGG + Chr7:89214190-89214209 MsG0780041288.01.T01:CDS 50.0%
CACGGCTTTGCCGTCAATTA+CGG - Chr7:89213635-89213654 None:intergenic 50.0%
CATCGAGGGTCTGTTTGGTA+AGG - Chr7:89214710-89214729 None:intergenic 50.0%
CCTTGCCGTATTTCTCAGAG+AGG - Chr7:89213699-89213718 None:intergenic 50.0%
CGCAACCTTCTCCGATCAAA+TGG + Chr7:89213606-89213625 MsG0780041288.01.T01:exon 50.0%
CGGTTGCAGAAGAAGAGAAG+AGG + Chr7:89215709-89215728 MsG0780041288.01.T01:intron 50.0%
CTGTCCTGAACAATCTGAGG+CGG + Chr7:89215871-89215890 MsG0780041288.01.T01:CDS 50.0%
GAGGTTGCAGGCATTACAGA+GGG - Chr7:89217775-89217794 None:intergenic 50.0%
GAGTGCAGGGAACAAAGAGA+GGG - Chr7:89214222-89214241 None:intergenic 50.0%
GCAAGCTTGCCGATGTTCAA+AGG - Chr7:89214184-89214203 None:intergenic 50.0%
GGAACTGGCCACAAACACTT+AGG - Chr7:89216920-89216939 None:intergenic 50.0%
GGACTTGCAGTGGTGATAGT+AGG + Chr7:89213822-89213841 MsG0780041288.01.T01:CDS 50.0%
GGTTGGATTACTCCTGTTCC+TGG + Chr7:89217365-89217384 MsG0780041288.01.T01:CDS 50.0%
GTGATCCCCCTAAAACCTGT+GGG + Chr7:89215105-89215124 MsG0780041288.01.T01:intron 50.0%
TCTCGCGAGAAATTGGAAGG+GGG - Chr7:89213768-89213787 None:intergenic 50.0%
TGCCTGTCCTGAACAATCTG+AGG + Chr7:89215868-89215887 MsG0780041288.01.T01:CDS 50.0%
TGGATTACTCCTGTTCCTGG+AGG + Chr7:89217368-89217387 MsG0780041288.01.T01:CDS 50.0%
TGTGATCCCCCTAAAACCTG+TGG + Chr7:89215104-89215123 MsG0780041288.01.T01:intron 50.0%
TGTGCGTTCTTGATCGGCAT+GGG - Chr7:89215176-89215195 None:intergenic 50.0%
TGTTATTGCAGCAGCAGGAC+AGG + Chr7:89216695-89216714 MsG0780041288.01.T01:CDS 50.0%
TTGTGCGTTCTTGATCGGCA+TGG - Chr7:89215177-89215196 None:intergenic 50.0%
! CCTCTCTGAGAAATACGGCA+AGG + Chr7:89213696-89213715 MsG0780041288.01.T01:CDS 50.0%
! GCTGTTGCTATTGCTGTTGG+TGG - Chr7:89215538-89215557 None:intergenic 50.0%
! GTGGTGGGAGAGAAGAAAGA+AGG - Chr7:89215509-89215528 None:intergenic 50.0%
! GTTGCTATTGCTGTTGGTGG+GGG - Chr7:89215535-89215554 None:intergenic 50.0%
! TTGCTATTGCTGTTGGTGGG+GGG - Chr7:89215534-89215553 None:intergenic 50.0%
!!! ACCTTCCCACAGGTTTTAGG+GGG - Chr7:89215113-89215132 None:intergenic 50.0%
ACATACTTGGGCATGGCTGC+AGG - Chr7:89217850-89217869 None:intergenic 55.0%
AGAGAGGATACGGACCTCGT+CGG - Chr7:89213683-89213702 None:intergenic 55.0%
AGCAGCAGGACAGGCAAAGA+TGG + Chr7:89216704-89216723 MsG0780041288.01.T01:CDS 55.0%
CAGGACAGGCAAGTGAGACA+AGG - Chr7:89215859-89215878 None:intergenic 55.0%
CATACTTGGGCATGGCTGCA+GGG - Chr7:89217849-89217868 None:intergenic 55.0%
CCTCGTCGGCGATTTCAGAT+CGG - Chr7:89213669-89213688 None:intergenic 55.0%
CGCCTCAGATTGTTCAGGAC+AGG - Chr7:89215873-89215892 None:intergenic 55.0%
CGTAATTGACGGCAAAGCCG+TGG + Chr7:89213633-89213652 MsG0780041288.01.T01:CDS 55.0%
CGTACCGCCTCAGATTGTTC+AGG - Chr7:89215878-89215897 None:intergenic 55.0%
GAGAGGGTCTCTGCCTTTCA+TGG - Chr7:89214206-89214225 None:intergenic 55.0%
GATGACCCAACTAGGAAGGC+AGG + Chr7:89217293-89217312 MsG0780041288.01.T01:CDS 55.0%
GGAGTGCAGGGAACAAAGAG+AGG - Chr7:89214223-89214242 None:intergenic 55.0%
GGCAAGTGAGACAAGGCACA+CGG - Chr7:89215852-89215871 None:intergenic 55.0%
GGCTTTGCCGTCAATTACGG+TGG - Chr7:89213632-89213651 None:intergenic 55.0%
GGGAAAAGGGCAGTTGTGGT+TGG + Chr7:89216555-89216574 MsG0780041288.01.T01:CDS 55.0%
GGTGGCCATTTGATCGGAGA+AGG - Chr7:89213614-89213633 None:intergenic 55.0%
GTCATTGGACCTACACCTCC+AGG - Chr7:89217386-89217405 None:intergenic 55.0%
TCCCCCTAAAACCTGTGGGA+AGG + Chr7:89215109-89215128 MsG0780041288.01.T01:intron 55.0%
! ACTCCTGTTCCTGGAGGTGT+AGG + Chr7:89217374-89217393 MsG0780041288.01.T01:CDS 55.0%
! CAGTTTTCGGCGACCGATGA+CGG + Chr7:89216069-89216088 MsG0780041288.01.T01:intron 55.0%
! CGAAGGCATGGTTGAGGTGA+CGG - Chr7:89215829-89215848 None:intergenic 55.0%
! GGTGCGAGTGTTTTGTGCTG+CGG - Chr7:89217828-89217847 None:intergenic 55.0%
! GTGCGAGTGTTTTGTGCTGC+GGG - Chr7:89217827-89217846 None:intergenic 55.0%
! TCAGGTTGCTGGACTTGCAG+TGG + Chr7:89213812-89213831 MsG0780041288.01.T01:intron 55.0%
CCGGCGTTTAAGAGCGGTAC+CGG - Chr7:89215918-89215937 None:intergenic 60.0%
CCGGTACCGCTCTTAAACGC+CGG + Chr7:89215915-89215934 MsG0780041288.01.T01:intron 60.0%
GGACCTACACCTCCAGGAAC+AGG - Chr7:89217380-89217399 None:intergenic 60.0%
TGAGACAAGGCACACGGCGA+AGG - Chr7:89215846-89215865 None:intergenic 60.0%
TTACGACCGAGACCTGGCGA+CGG - Chr7:89215797-89215816 None:intergenic 60.0%
! ACACGGCGAAGGCATGGTTG+AGG - Chr7:89215835-89215854 None:intergenic 60.0%
! ATGGTTGAGGTGACGGCAGG+CGG - Chr7:89215822-89215841 None:intergenic 60.0%
! CCGATCTGAAATCGCCGACG+AGG + Chr7:89213666-89213685 MsG0780041288.01.T01:CDS 60.0%
! CTATTGCTGTTGGTGGGGGG+CGG - Chr7:89215531-89215550 None:intergenic 60.0%
!! TTTAAGAGCGGTACCGGCGC+TGG - Chr7:89215912-89215931 None:intergenic 60.0%
CAAGGCACACGGCGAAGGCA+TGG - Chr7:89215841-89215860 None:intergenic 65.0%
GCGGAGTTACGACCGAGACC+TGG - Chr7:89215803-89215822 None:intergenic 65.0%
! GATAGAGTGCCACCGTCGCC+AGG + Chr7:89215782-89215801 MsG0780041288.01.T01:CDS 65.0%
! GGCATGGTTGAGGTGACGGC+AGG - Chr7:89215825-89215844 None:intergenic 65.0%
CGCAACCTCTGCTCCAGCGC+CGG + Chr7:89215896-89215915 MsG0780041288.01.T01:intron 70.0%
GTGCCACCGTCGCCAGGTCT+CGG + Chr7:89215788-89215807 MsG0780041288.01.T01:CDS 70.0%
! TGTTGGTGGGGGGCGGTGGT+GGG - Chr7:89215524-89215543 None:intergenic 70.0%
! TTGCTGTTGGTGGGGGGCGG+TGG - Chr7:89215528-89215547 None:intergenic 70.0%
CGACCGAGACCTGGCGACGG+TGG - Chr7:89215794-89215813 None:intergenic 75.0%
! CTGTTGGTGGGGGGCGGTGG+TGG - Chr7:89215525-89215544 None:intergenic 75.0%
!! CGGTACCGGCGCTGGAGCAG+AGG - Chr7:89215904-89215923 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 89213519 89217965 89213519 ID=MsG0780041288.01;Name=MsG0780041288.01
Chr7 mRNA 89213519 89217965 89213519 ID=MsG0780041288.01.T01;Parent=MsG0780041288.01;Name=MsG0780041288.01.T01;_AED=0.44;_eAED=0.53;_QI=106|0.66|0.71|1|0.83|0.71|7|298|376
Chr7 exon 89213519 89213717 89213519 ID=MsG0780041288.01.T01:exon:20571;Parent=MsG0780041288.01.T01
Chr7 exon 89213816 89213999 89213816 ID=MsG0780041288.01.T01:exon:20572;Parent=MsG0780041288.01.T01
Chr7 exon 89214089 89214317 89214089 ID=MsG0780041288.01.T01:exon:20573;Parent=MsG0780041288.01.T01
Chr7 exon 89215718 89215892 89215718 ID=MsG0780041288.01.T01:exon:20574;Parent=MsG0780041288.01.T01
Chr7 exon 89216513 89216725 89216513 ID=MsG0780041288.01.T01:exon:20575;Parent=MsG0780041288.01.T01
Chr7 exon 89217233 89217685 89217233 ID=MsG0780041288.01.T01:exon:20576;Parent=MsG0780041288.01.T01
Chr7 exon 89217884 89217965 89217884 ID=MsG0780041288.01.T01:exon:20577;Parent=MsG0780041288.01.T01
Chr7 five_prime_UTR 89213519 89213624 89213519 ID=MsG0780041288.01.T01:five_prime_utr;Parent=MsG0780041288.01.T01
Chr7 CDS 89213625 89213717 89213625 ID=MsG0780041288.01.T01:cds;Parent=MsG0780041288.01.T01
Chr7 CDS 89213816 89213999 89213816 ID=MsG0780041288.01.T01:cds;Parent=MsG0780041288.01.T01
Chr7 CDS 89214089 89214317 89214089 ID=MsG0780041288.01.T01:cds;Parent=MsG0780041288.01.T01
Chr7 CDS 89215718 89215892 89215718 ID=MsG0780041288.01.T01:cds;Parent=MsG0780041288.01.T01
Chr7 CDS 89216513 89216725 89216513 ID=MsG0780041288.01.T01:cds;Parent=MsG0780041288.01.T01
Chr7 CDS 89217233 89217469 89217233 ID=MsG0780041288.01.T01:cds;Parent=MsG0780041288.01.T01
Chr7 three_prime_UTR 89217470 89217685 89217470 ID=MsG0780041288.01.T01:three_prime_utr;Parent=MsG0780041288.01.T01
Chr7 three_prime_UTR 89217884 89217965 89217884 ID=MsG0780041288.01.T01:three_prime_utr;Parent=MsG0780041288.01.T01
Gene Sequence

>MsG0780041288.01.T01

ATGGCCACCGTAATTGACGGCAAAGCCGTGGCACAAACAATCCGATCTGAAATCGCCGACGAGGTCCGTATCCTCTCTGAGAAATACGGCAAGGTTGCTGGACTTGCAGTGGTGATAGTAGGGAACAGACAAGATTCAGAAAGCTATGTAAGAACGAAGAGAAAAGCTTGCGCTGATTTGGGAATCAAAAACTTCGACATTGACCTTCCTGAACAAATTTCCGAAGCTGAAGTAATCAAGCATGTTCATCAATTGAACGCTGATCCCAATGTACATGGTATATTGGTTCAACTTCCACTGCCCAAACATATAAATGAAGAGAAAGTTTTGACTGAAATCAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATCGGCAAGCTTGCCATGAAAGGCAGAGACCCTCTCTTTGTTCCCTGCACTCCCAAAGTAAATGCTCTTCATTCTCAAATCTTTTGGATTCAACTCAATTCTATCAATAGGAAAATAATCCAGGCTCTAAGAAGAGAAGAGGATGAAGAAGGAAGAAAATTGAAGAACACGGTCACAGGAGAAGAAAGAGAAGATAGAGTGCCACCGTCGCCAGGTCTCGGTCGTAACTCCGCCTGCCGTCACCTCAACCATGCCTTCGCCGTGTGCCTTGTCTCACTTGCCTGTCCTGAACAATCTGAGGCGGCATGTCTTGAACTATTGTCACGAAGTGGTGTAAGTATAAAGGGGAAAAGGGCAGTTGTGGTTGGTAGAAGCAACATAGTCGGGTTACCAGTTTCATTACTGCTTTTGAAAGCAGATGCTACGGTTACCATTGCTCATTCACACACAAGTCAACCAGAAGACATCATACGTGAAGCAGATATTGTTATTGCAGCAGCAGGACAGGCAAAGATGATCAAGGGAAGTTGGATAAAACCTGGAGCTGCAGTAATAGATGTCGGCATGAATTCTGTTGATGACCCAACTAGGAAGGCAGGTTATAGGCTTGTTGGAGATGTAGATTTTGAGGAAGCATCTAAAGTTGCTGGTTGGATTACTCCTGTTCCTGGAGGTGTAGGTCCAATGACAGTCACAATGTTGCTGAAGAATACTTTGGAGAGTGCTAAGCGCAGCATTGAGCAGAATAACTGA

Protein sequence

>MsG0780041288.01.T01

MATVIDGKAVAQTIRSEIADEVRILSEKYGKVAGLAVVIVGNRQDSESYVRTKRKACADLGIKNFDIDLPEQISEAEVIKHVHQLNADPNVHGILVQLPLPKHINEEKVLTEISLEKDVDGFHPLNIGKLAMKGRDPLFVPCTPKVNALHSQIFWIQLNSINRKIIQALRREEDEEGRKLKNTVTGEEREDRVPPSPGLGRNSACRHLNHAFAVCLVSLACPEQSEAACLELLSRSGVSIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIAHSHTSQPEDIIREADIVIAAAGQAKMIKGSWIKPGAAVIDVGMNSVDDPTRKAGYRLVGDVDFEEASKVAGWITPVPGGVGPMTVTMLLKNTLESAKRSIEQNN*