AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451480 MtrunA17_Chr2g0282181 91.830 306 6 4 1 306 1 287 0.0 566
Msa1451480 MtrunA17_Chr4g0027101 37.407 270 141 5 21 284 3 250 8.21e-53 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451480 AT5G22620.4 43.981 216 110 2 73 287 31 236 3.92e-58 193
Msa1451480 AT5G22620.3 43.981 216 110 2 73 287 31 236 3.92e-58 193
Msa1451480 AT5G22620.6 43.981 216 110 2 73 287 31 236 4.31e-58 194
Msa1451480 AT5G22620.1 43.981 216 110 2 73 287 31 236 5.51e-58 194
Msa1451480 AT5G22620.5 43.981 216 110 2 73 287 31 236 5.51e-58 194
Msa1451480 AT5G22620.2 43.981 216 110 2 73 287 31 236 5.51e-58 194

Find 73 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTTTGCTTCTAATT+TGG 0.164289 tig0033439:+4687 Msa1451480:intron
GAGATGAAATGAAAATAATT+TGG 0.269199 tig0033439:+3000 Msa1451480:five_prime_UTR
TCTACCATTCATGACAAAAT+TGG 0.307684 tig0033439:-4770 None:intergenic
AGCAAACTGCTGAAATTATA+TGG 0.326556 tig0033439:+3936 Msa1451480:intron
ACTTGCACTGCTTTAGGCCT+TGG 0.331082 tig0033439:+4984 Msa1451480:CDS
TTCAGCAACCAAGAGATTTC+AGG 0.337173 tig0033439:-5680 None:intergenic
CTAACCTTGGCACGAGATAT+TGG 0.340655 tig0033439:-3831 None:intergenic
TGATGAAGTGATTAACTCAT+TGG 0.341759 tig0033439:-3486 None:intergenic
ACTAATAATGCTTACCTCTC+GGG 0.379397 tig0033439:-5008 None:intergenic
GCATTAACTTGCACTGCTTT+AGG 0.388052 tig0033439:+4978 Msa1451480:CDS
AAGCAAGCACGGTGTTAGTA+TGG 0.388631 tig0033439:+3052 Msa1451480:exon
GGATGCTAAGCAAATATATA+AGG 0.396264 tig0033439:+4717 Msa1451480:CDS
GAATGCTGAAAGTAGAATTC+AGG 0.401668 tig0033439:+3547 Msa1451480:CDS
ATAAGGAGGAATACAGAATC+TGG 0.408630 tig0033439:+4734 Msa1451480:CDS
TGCTTCTAATTTGGAGGCAG+TGG 0.409080 tig0033439:+4696 Msa1451480:CDS
TTCGAGCATTGCTTCTCCTC+TGG 0.441980 tig0033439:-5611 None:intergenic
GGATAGCTGCAAGAGATTGT+TGG 0.443903 tig0033439:+4812 Msa1451480:CDS
ATATCTCTCTATCACCTTGA+AGG 0.451579 tig0033439:+4004 Msa1451480:CDS
AAGCACGGTGTTAGTATGGC+AGG 0.454438 tig0033439:+3056 Msa1451480:exon
TGCTTCTTCACCTTCTCTTG+TGG 0.457782 tig0033439:-3034 None:intergenic
TCCCACCGTTGTTGATATCA+AGG 0.457935 tig0033439:-5567 None:intergenic
GATATCCTGTACAAGATCTC+TGG 0.459702 tig0033439:+4791 Msa1451480:CDS
AGACTCAGTACACTAATCAT+TGG 0.470577 tig0033439:-5834 None:intergenic
TTGTCAGTACTAACTGAGGC+TGG 0.472288 tig0033439:+3741 Msa1451480:CDS
GAGAAGAAGCGAAGGAGGAG+CGG 0.474449 tig0033439:-3142 None:intergenic
CAACACTAGTGAGTGCTTGA+TGG 0.481250 tig0033439:+5749 Msa1451480:three_prime_UTR
TCAGTTTGCTTCTAATTTGG+AGG 0.487074 tig0033439:+4690 Msa1451480:intron
TTGAGTTAACCTATGGCAGC+AGG 0.491914 tig0033439:-3224 None:intergenic
AGAAGAAGCGAAGGAGGAGC+GGG 0.498095 tig0033439:-3141 None:intergenic
TAAGGCATGGTCTTAGCACT+TGG 0.512686 tig0033439:+3525 Msa1451480:CDS
TGACTCACAAATCAATATTG+AGG 0.513537 tig0033439:+4955 Msa1451480:CDS
CAGTGAATGCGGCGAGTGAG+AGG 0.516000 tig0033439:-3176 None:intergenic
GACTCACAAATCAATATTGA+GGG 0.516265 tig0033439:+4956 Msa1451480:CDS
ACTTCATACCCTGCTGCCAT+AGG 0.523920 tig0033439:+3215 Msa1451480:CDS
CCATTCATGACAAAATTGGC+TGG 0.527605 tig0033439:-4766 None:intergenic
TGTCAGTACTAACTGAGGCT+GGG 0.534843 tig0033439:+3742 Msa1451480:CDS
ATATCCTGCCTGAAATCTCT+TGG 0.545845 tig0033439:+5672 Msa1451480:exon
TTGGTTGCTGAATGCAAGGA+AGG 0.547319 tig0033439:+5691 Msa1451480:three_prime_UTR
AGTGAATCAGTGTAAACCAA+TGG 0.551565 tig0033439:-3974 None:intergenic
ATGCTTACCTCTCGGGGCCA+AGG 0.558444 tig0033439:-5001 None:intergenic
GAAAGTAGAACCACAAGAGA+AGG 0.559878 tig0033439:+3024 Msa1451480:five_prime_UTR
GTCAGTACTAACTGAGGCTG+GGG 0.566390 tig0033439:+3743 Msa1451480:CDS
TCTCTTGGTTGCTGAATGCA+AGG 0.566644 tig0033439:+5687 Msa1451480:three_prime_UTR
AGTACTAACTGAGGCTGGGG+TGG 0.571281 tig0033439:+3746 Msa1451480:CDS
AGCACGGTGTTAGTATGGCA+GGG 0.576311 tig0033439:+3057 Msa1451480:exon
TGCGGCGAGTGAGAGGAAGA+TGG 0.577745 tig0033439:-3169 None:intergenic
ATGGAGCTGAGAAGAAGCGA+AGG 0.586294 tig0033439:-3150 None:intergenic
AGAGAGATGCAAGAAAGCAT+TGG 0.588842 tig0033439:+3776 Msa1451480:CDS
GAGCTGAGAAGAAGCGAAGG+AGG 0.593039 tig0033439:-3147 None:intergenic
GCTATCCAGAGATCTTGTAC+AGG 0.594243 tig0033439:-4796 None:intergenic
ACTGCTGAAATTATATGGCA+AGG 0.595942 tig0033439:+3941 Msa1451480:CDS
AGAAGGTGAAGAAGCAAGCA+CGG 0.596424 tig0033439:+3041 Msa1451480:five_prime_UTR
GCACGGTGTTAGTATGGCAG+GGG 0.601938 tig0033439:+3058 Msa1451480:exon
CCCTTGATATCAACAACGGT+GGG 0.602416 tig0033439:+5566 Msa1451480:CDS
CTAATAATGCTTACCTCTCG+GGG 0.611994 tig0033439:-5007 None:intergenic
GGCAACTCATACAGAAGCTG+AGG 0.612162 tig0033439:+5770 Msa1451480:three_prime_UTR
CAGTCCAATATCTCGTGCCA+AGG 0.616021 tig0033439:+3827 Msa1451480:CDS
ATATTGGACTGGCAAGACAT+TGG 0.617224 tig0033439:-3815 None:intergenic
CGTTCCCTTGATATCAACAA+CGG 0.619427 tig0033439:+5562 Msa1451480:CDS
TGCTAAGCAAATATATAAGG+AGG 0.624637 tig0033439:+4720 Msa1451480:CDS
CCCACCGTTGTTGATATCAA+GGG 0.631670 tig0033439:-5566 None:intergenic
TCCCTTGATATCAACAACGG+TGG 0.632999 tig0033439:+5565 Msa1451480:CDS
GAAATAGTCAGACATGGTGA+TGG 0.635078 tig0033439:-3119 None:intergenic
GCAACCAAGAGATTTCAGGC+AGG 0.642711 tig0033439:-5676 None:intergenic
CTTTAGGCCTTGGCCCCGAG+AGG 0.643406 tig0033439:+4994 Msa1451480:CDS
TGAGTTAACCTATGGCAGCA+GGG 0.655476 tig0033439:-3223 None:intergenic
CTTGGCACGAGATATTGGAC+TGG 0.659086 tig0033439:-3826 None:intergenic
TAGAAGTTGAGCAGTGAATG+CGG 0.662780 tig0033439:-3187 None:intergenic
AGCTGCAAGAGATTGTTGGA+AGG 0.663605 tig0033439:+4816 Msa1451480:CDS
GAGCGGGAAATAGTCAGACA+TGG 0.675401 tig0033439:-3125 None:intergenic
AGATTTGTCAGTACTAACTG+AGG 0.717407 tig0033439:+3737 Msa1451480:CDS
GTATTCAACTTCAACACCAG+AGG 0.718413 tig0033439:+5595 Msa1451480:CDS
TGGTTGTGAGCACAACAAAG+TGG 0.749709 tig0033439:-3099 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAGAATAAACATGA+AGG - tig0033439:3285-3304 None:intergenic 15.0%
!!! ACTATTATTTTATAGTTAAC+TGG + tig0033439:4122-4141 Msa1451480:intron 15.0%
!!! GATAGATTTTATATAGTTTA+AGG - tig0033439:4245-4264 None:intergenic 15.0%
!! ACTATATTTATATAGTTTAG+AGG + tig0033439:4363-4382 Msa1451480:intron 15.0%
!! GAGATGAAATGAAAATAATT+TGG + tig0033439:3000-3019 Msa1451480:five_prime_UTR 20.0%
!! TTCTTTAAATTGAATAAGTG+AGG + tig0033439:3294-3313 Msa1451480:intron 20.0%
!! ACAGAAAAATCAATACTATT+TGG - tig0033439:3422-3441 None:intergenic 20.0%
!! ATCAATTTAATGACAATGAA+TGG - tig0033439:3696-3715 None:intergenic 20.0%
!! TAAATTGATCATATGTGTTT+AGG + tig0033439:3707-3726 Msa1451480:intron 20.0%
!! AAATTGATCATATGTGTTTA+GGG + tig0033439:3708-3727 Msa1451480:intron 20.0%
!! TGATAGTCAATTTATTTAAC+TGG + tig0033439:3896-3915 Msa1451480:intron 20.0%
!!! TCAATTTATTTAACTGGTTT+TGG + tig0033439:3902-3921 Msa1451480:intron 20.0%
!! ATATAGTTTAAGGACTAAAT+TGG - tig0033439:4235-4254 None:intergenic 20.0%
!! ACAGATTTGTATATACTTTA+AGG - tig0033439:4276-4295 None:intergenic 20.0%
!! TTTACATTTCATATACCATA+AGG + tig0033439:4333-4352 Msa1451480:intron 20.0%
!! AATATAGTAAATAGTCCTTA+TGG - tig0033439:4351-4370 None:intergenic 20.0%
!!! GACTAAATTGATGATTTATT+TGG + tig0033439:4415-4434 Msa1451480:intron 20.0%
!! CTATAGTTTAATCATAAAGA+AGG - tig0033439:4499-4518 None:intergenic 20.0%
!! CTTCTTTATGATTAAACTAT+AGG + tig0033439:4497-4516 Msa1451480:intron 20.0%
!!! TATTTTTACAATAGTATTCC+AGG + tig0033439:5093-5112 Msa1451480:intron 20.0%
!! TAGAACATTGAAGTTATAAA+TGG - tig0033439:5162-5181 None:intergenic 20.0%
!! AAAACCAATGTTTAAAAAAC+TGG - tig0033439:5397-5416 None:intergenic 20.0%
! TTTAAATTGAATAAGTGAGG+AGG + tig0033439:3297-3316 Msa1451480:intron 25.0%
! GACTATTTGTAAAGAAATAC+TGG + tig0033439:3319-3338 Msa1451480:intron 25.0%
!!! AGTATTGATTTTTCTGTAAC+TGG + tig0033439:3425-3444 Msa1451480:CDS 25.0%
!!! TTTTGTTTTGATGTTTCACA+TGG + tig0033439:3652-3671 Msa1451480:intron 25.0%
! TAGTTTAGGGACTAAATTTA+TGG - tig0033439:4201-4220 None:intergenic 25.0%
!! AAATCAGTTTGCTTCTAATT+TGG + tig0033439:4687-4706 Msa1451480:intron 25.0%
! CATTGAAGTTATAAATGGTA+CGG - tig0033439:5157-5176 None:intergenic 25.0%
! CTGGAATCTTTATCAAAAAA+TGG - tig0033439:5186-5205 None:intergenic 25.0%
!! TTTTTGATAAAGATTCCAGT+TGG + tig0033439:5187-5206 Msa1451480:intron 25.0%
! TTTAAGCAATGTTTCAAAAC+TGG + tig0033439:5256-5275 Msa1451480:intron 25.0%
! CCATTCTATGATAAAAACAA+TGG - tig0033439:5727-5746 None:intergenic 25.0%
!!! CCATTGTTTTTATCATAGAA+TGG + tig0033439:5724-5743 Msa1451480:three_prime_UTR 25.0%
!!! AAACTCTAAGATTTTGTGTA+GGG + tig0033439:5911-5930 Msa1451480:three_prime_UTR 25.0%
AGTTGAATTGAGTTAACCTA+TGG - tig0033439:3234-3253 None:intergenic 30.0%
!! ATTGATTTTTCTGTAACTGG+TGG + tig0033439:3428-3447 Msa1451480:CDS 30.0%
TGATGAAGTGATTAACTCAT+TGG - tig0033439:3489-3508 None:intergenic 30.0%
! CAAAGAAAGTCACTCTTTTA+AGG + tig0033439:3507-3526 Msa1451480:CDS 30.0%
AGCAAACTGCTGAAATTATA+TGG + tig0033439:3936-3955 Msa1451480:intron 30.0%
! TCTGCTCAACTTTAAAAACA+AGG + tig0033439:4049-4068 Msa1451480:intron 30.0%
AGTTTAAGGACTAAATTGGT+GGG - tig0033439:4231-4250 None:intergenic 30.0%
TAGTTTAAGGACTAAATTGG+TGG - tig0033439:4232-4251 None:intergenic 30.0%
GTTTAATCATAAAGAAGGAC+AGG - tig0033439:4494-4513 None:intergenic 30.0%
ACTTTGCTCTGACTTTAAAT+AGG + tig0033439:4571-4590 Msa1451480:intron 30.0%
CTTTGCTCTGACTTTAAATA+GGG + tig0033439:4572-4591 Msa1451480:intron 30.0%
GGATGCTAAGCAAATATATA+AGG + tig0033439:4717-4736 Msa1451480:CDS 30.0%
TGCTAAGCAAATATATAAGG+AGG + tig0033439:4720-4739 Msa1451480:CDS 30.0%
TCTACCATTCATGACAAAAT+TGG - tig0033439:4773-4792 None:intergenic 30.0%
CAATGGCAAAAAAATCTTAC+AGG - tig0033439:4856-4875 None:intergenic 30.0%
TGACTCACAAATCAATATTG+AGG + tig0033439:4955-4974 Msa1451480:CDS 30.0%
GACTCACAAATCAATATTGA+GGG + tig0033439:4956-4975 Msa1451480:CDS 30.0%
AACATGAAATTTCTTCTTCC+TGG - tig0033439:5114-5133 None:intergenic 30.0%
ACCAATTGAATTAGCTAGTT+CGG + tig0033439:5370-5389 Msa1451480:intron 30.0%
! GATAGAGCATCAAATTCAAA+TGG - tig0033439:5493-5512 None:intergenic 30.0%
!!! CAAACTCTAAGATTTTGTGT+AGG + tig0033439:5910-5929 Msa1451480:three_prime_UTR 30.0%
ACATTTACTCCAATCCAACA+TGG + tig0033439:3356-3375 Msa1451480:intron 35.0%
CATTTACTCCAATCCAACAT+GGG + tig0033439:3357-3376 Msa1451480:intron 35.0%
!!! AAAGTCACTCTTTTAAGGCA+TGG + tig0033439:3512-3531 Msa1451480:CDS 35.0%
GAATGCTGAAAGTAGAATTC+AGG + tig0033439:3547-3566 Msa1451480:CDS 35.0%
CAAAACAAAAACTTCAGTCC+TGG - tig0033439:3642-3661 None:intergenic 35.0%
AGATTTGTCAGTACTAACTG+AGG + tig0033439:3737-3756 Msa1451480:CDS 35.0%
ACTGCTGAAATTATATGGCA+AGG + tig0033439:3941-3960 Msa1451480:CDS 35.0%
AGTGAATCAGTGTAAACCAA+TGG - tig0033439:3977-3996 None:intergenic 35.0%
ATATCTCTCTATCACCTTGA+AGG + tig0033439:4004-4023 Msa1451480:CDS 35.0%
CACCTTGAAGGATTGAAAAA+TGG + tig0033439:4016-4035 Msa1451480:CDS 35.0%
!! CACCATTTTTCAATCCTTCA+AGG - tig0033439:4021-4040 None:intergenic 35.0%
!!! TTTTAAAGTTGAGCAGAGAC+AGG - tig0033439:4046-4065 None:intergenic 35.0%
! TAACTGGCATACTTGTTGAT+AGG + tig0033439:4138-4157 Msa1451480:intron 35.0%
TCTCTAACATCCTAATAGCA+GGG + tig0033439:4304-4323 Msa1451480:intron 35.0%
TAAATTCAGTCCCTGCTATT+AGG - tig0033439:4317-4336 None:intergenic 35.0%
TGAAGAGAGAAGGATAGTTT+AGG + tig0033439:4392-4411 Msa1451480:intron 35.0%
GAAGAGAGAAGGATAGTTTA+GGG + tig0033439:4393-4412 Msa1451480:intron 35.0%
!! AGTCAGAGCAAAGTTTTGTA+TGG - tig0033439:4565-4584 None:intergenic 35.0%
GATTAATCGATCCTTGCATA+CGG + tig0033439:4629-4648 Msa1451480:intron 35.0%
AATTGAAAACTCCGTATGCA+AGG - tig0033439:4643-4662 None:intergenic 35.0%
! TCAGTTTGCTTCTAATTTGG+AGG + tig0033439:4690-4709 Msa1451480:intron 35.0%
ATAAGGAGGAATACAGAATC+TGG + tig0033439:4734-4753 Msa1451480:CDS 35.0%
AAGATTCATCTTACTCTGCA+GGG + tig0033439:4915-4934 Msa1451480:intron 35.0%
ACTAATAATGCTTACCTCTC+GGG - tig0033439:5011-5030 None:intergenic 35.0%
GACTAATAATGCTTACCTCT+CGG - tig0033439:5012-5031 None:intergenic 35.0%
CAACATTTATGACAACCAAC+TGG - tig0033439:5205-5224 None:intergenic 35.0%
TGTCAAATGATACCATGATC+AGG + tig0033439:5227-5246 Msa1451480:intron 35.0%
CTTAAAACAACACCTGATCA+TGG - tig0033439:5242-5261 None:intergenic 35.0%
GCAATGTTTCAAAACTGGTT+CGG + tig0033439:5261-5280 Msa1451480:intron 35.0%
!! TTTCAAAACTGGTTCGGAAA+TGG + tig0033439:5267-5286 Msa1451480:intron 35.0%
AAATGGAATTGGTGAGACTT+TGG + tig0033439:5284-5303 Msa1451480:intron 35.0%
ACCGAACTAGCTAATTCAAT+TGG - tig0033439:5374-5393 None:intergenic 35.0%
!!! CGGTCCAGTTTTTTAAACAT+TGG + tig0033439:5390-5409 Msa1451480:intron 35.0%
AATGTCAGCTGCTAGAATAT+TGG - tig0033439:5515-5534 None:intergenic 35.0%
AGACATTGATCACAATGTTC+AGG + tig0033439:5536-5555 Msa1451480:intron 35.0%
AGACTCAGTACACTAATCAT+TGG - tig0033439:5837-5856 None:intergenic 35.0%
GAAAGTAGAACCACAAGAGA+AGG + tig0033439:3024-3043 Msa1451480:five_prime_UTR 40.0%
GAAATAGTCAGACATGGTGA+TGG - tig0033439:3122-3141 None:intergenic 40.0%
TAGAAGTTGAGCAGTGAATG+CGG - tig0033439:3190-3209 None:intergenic 40.0%
AGCTAGCTGATGACATATAG+CGG - tig0033439:3600-3619 None:intergenic 40.0%
ATGACAATGAATGGCAGATG+TGG - tig0033439:3687-3706 None:intergenic 40.0%
! AGAGAGATGCAAGAAAGCAT+TGG + tig0033439:3776-3795 Msa1451480:CDS 40.0%
!! ATATTGGACTGGCAAGACAT+TGG - tig0033439:3818-3837 None:intergenic 40.0%
GCAAGGAAGAGAAAAACCAT+TGG + tig0033439:3958-3977 Msa1451480:CDS 40.0%
GTCTCTAACATCCTAATAGC+AGG + tig0033439:4303-4322 Msa1451480:intron 40.0%
CCATTCATGACAAAATTGGC+TGG - tig0033439:4769-4788 None:intergenic 40.0%
! CCAGCCAATTTTGTCATGAA+TGG + tig0033439:4766-4785 Msa1451480:CDS 40.0%
GATATCCTGTACAAGATCTC+TGG + tig0033439:4791-4810 Msa1451480:CDS 40.0%
CTTGCAACACTGTGTATCAA+TGG - tig0033439:4873-4892 None:intergenic 40.0%
CAAGATTCATCTTACTCTGC+AGG + tig0033439:4914-4933 Msa1451480:intron 40.0%
!! GCATTAACTTGCACTGCTTT+AGG + tig0033439:4978-4997 Msa1451480:CDS 40.0%
CTAATAATGCTTACCTCTCG+GGG - tig0033439:5010-5029 None:intergenic 40.0%
!! AACTGGTTCGGAAATGGAAT+TGG + tig0033439:5273-5292 Msa1451480:intron 40.0%
GATCTAGCCAACCAATGAAA+TGG + tig0033439:5332-5351 Msa1451480:intron 40.0%
CAATTGGTTGAATCGAGAAC+CGG - tig0033439:5358-5377 None:intergenic 40.0%
CGTTCCCTTGATATCAACAA+CGG + tig0033439:5562-5581 Msa1451480:CDS 40.0%
GTATTCAACTTCAACACCAG+AGG + tig0033439:5595-5614 Msa1451480:CDS 40.0%
ATATCCTGCCTGAAATCTCT+TGG + tig0033439:5672-5691 Msa1451480:exon 40.0%
TTCAGCAACCAAGAGATTTC+AGG - tig0033439:5683-5702 None:intergenic 40.0%
TGCTTCTTCACCTTCTCTTG+TGG - tig0033439:3037-3056 None:intergenic 45.0%
AGAAGGTGAAGAAGCAAGCA+CGG + tig0033439:3041-3060 Msa1451480:five_prime_UTR 45.0%
! AAGCAAGCACGGTGTTAGTA+TGG + tig0033439:3052-3071 Msa1451480:exon 45.0%
TGGTTGTGAGCACAACAAAG+TGG - tig0033439:3102-3121 None:intergenic 45.0%
TGAGTTAACCTATGGCAGCA+GGG - tig0033439:3226-3245 None:intergenic 45.0%
TTGAGTTAACCTATGGCAGC+AGG - tig0033439:3227-3246 None:intergenic 45.0%
AACTTCAGCCCATGTTGGAT+TGG - tig0033439:3368-3387 None:intergenic 45.0%
! AATCCAACATGGGCTGAAGT+TGG + tig0033439:3367-3386 Msa1451480:intron 45.0%
AAACCAACTTCAGCCCATGT+TGG - tig0033439:3373-3392 None:intergenic 45.0%
!!! ATGGGCTGAAGTTGGTTTTG+TGG + tig0033439:3375-3394 Msa1451480:intron 45.0%
! TAAGGCATGGTCTTAGCACT+TGG + tig0033439:3525-3544 Msa1451480:CDS 45.0%
AACTTCAGTCCTGGAAGCAA+GGG - tig0033439:3633-3652 None:intergenic 45.0%
AAACTTCAGTCCTGGAAGCA+AGG - tig0033439:3634-3653 None:intergenic 45.0%
TTGTCAGTACTAACTGAGGC+TGG + tig0033439:3741-3760 Msa1451480:CDS 45.0%
TGTCAGTACTAACTGAGGCT+GGG + tig0033439:3742-3761 Msa1451480:CDS 45.0%
CTAACCTTGGCACGAGATAT+TGG - tig0033439:3834-3853 None:intergenic 45.0%
CAATATCTCGTGCCAAGGTT+AGG + tig0033439:3832-3851 Msa1451480:intron 45.0%
! GGTGGGAGTGTGATAGTTTA+GGG - tig0033439:4214-4233 None:intergenic 45.0%
! TGGTGGGAGTGTGATAGTTT+AGG - tig0033439:4215-4234 None:intergenic 45.0%
! GAGGCTAAGTTGAAGAGAGA+AGG + tig0033439:4382-4401 Msa1451480:intron 45.0%
TAGTCCACCGAAATTTGCAC+CGG - tig0033439:4540-4559 None:intergenic 45.0%
CAAGGATCGATTAATCCGAG+GGG - tig0033439:4625-4644 None:intergenic 45.0%
GCAAGGATCGATTAATCCGA+GGG - tig0033439:4626-4645 None:intergenic 45.0%
TGCAAGGATCGATTAATCCG+AGG - tig0033439:4627-4646 None:intergenic 45.0%
TGCTTCTAATTTGGAGGCAG+TGG + tig0033439:4696-4715 Msa1451480:CDS 45.0%
GCTATCCAGAGATCTTGTAC+AGG - tig0033439:4799-4818 None:intergenic 45.0%
GGATAGCTGCAAGAGATTGT+TGG + tig0033439:4812-4831 Msa1451480:CDS 45.0%
AGCTGCAAGAGATTGTTGGA+AGG + tig0033439:4816-4835 Msa1451480:CDS 45.0%
CAGCAAGACTGCAATGTAAC+CGG + tig0033439:5309-5328 Msa1451480:intron 45.0%
AGCAAGACTGCAATGTAACC+GGG + tig0033439:5310-5329 Msa1451480:intron 45.0%
! TTCATTGGTTGGCTAGATCC+CGG - tig0033439:5331-5350 None:intergenic 45.0%
TAGCCAACCAATGAAATGGC+CGG + tig0033439:5336-5355 Msa1451480:intron 45.0%
GTTCATGCTACACATGCAAG+AGG - tig0033439:5462-5481 None:intergenic 45.0%
TCCCTTGATATCAACAACGG+TGG + tig0033439:5565-5584 Msa1451480:CDS 45.0%
CCCACCGTTGTTGATATCAA+GGG - tig0033439:5569-5588 None:intergenic 45.0%
CCCTTGATATCAACAACGGT+GGG + tig0033439:5566-5585 Msa1451480:CDS 45.0%
TCCCACCGTTGTTGATATCA+AGG - tig0033439:5570-5589 None:intergenic 45.0%
TCTCTTGGTTGCTGAATGCA+AGG + tig0033439:5687-5706 Msa1451480:three_prime_UTR 45.0%
TTGGTTGCTGAATGCAAGGA+AGG + tig0033439:5691-5710 Msa1451480:three_prime_UTR 45.0%
CAACACTAGTGAGTGCTTGA+TGG + tig0033439:5749-5768 Msa1451480:three_prime_UTR 45.0%
!!! ATATATTTTTAATATGTTTA+TGG + tig0033439:4075-4094 Msa1451480:intron 5.0%
!! AATATTTATCAAAAATATTA+AGG - tig0033439:5869-5888 None:intergenic 5.0%
! AAGCACGGTGTTAGTATGGC+AGG + tig0033439:3056-3075 Msa1451480:exon 50.0%
! AGCACGGTGTTAGTATGGCA+GGG + tig0033439:3057-3076 Msa1451480:exon 50.0%
GAGCGGGAAATAGTCAGACA+TGG - tig0033439:3128-3147 None:intergenic 50.0%
ATGGAGCTGAGAAGAAGCGA+AGG - tig0033439:3153-3172 None:intergenic 50.0%
ACTTCATACCCTGCTGCCAT+AGG + tig0033439:3215-3234 Msa1451480:CDS 50.0%
ATCCGTTATCCCTTGCTTCC+AGG + tig0033439:3621-3640 Msa1451480:intron 50.0%
GTCCTGGAAGCAAGGGATAA+CGG - tig0033439:3626-3645 None:intergenic 50.0%
GTCAGTACTAACTGAGGCTG+GGG + tig0033439:3743-3762 Msa1451480:CDS 50.0%
CTTGGCACGAGATATTGGAC+TGG - tig0033439:3829-3848 None:intergenic 50.0%
CAGTCCAATATCTCGTGCCA+AGG + tig0033439:3827-3846 Msa1451480:CDS 50.0%
ATTTCACCGCTGCCTAACCT+TGG - tig0033439:3847-3866 None:intergenic 50.0%
ATTCCCCCCGGTGCAAATTT+CGG + tig0033439:4530-4549 Msa1451480:intron 50.0%
AGTCCACCGAAATTTGCACC+GGG - tig0033439:4539-4558 None:intergenic 50.0%
! ACTTGCACTGCTTTAGGCCT+TGG + tig0033439:4984-5003 Msa1451480:CDS 50.0%
GAACCGGCCATTTCATTGGT+TGG - tig0033439:5342-5361 None:intergenic 50.0%
TCGAGAACCGGCCATTTCAT+TGG - tig0033439:5346-5365 None:intergenic 50.0%
! TTCGAGCATTGCTTCTCCTC+TGG - tig0033439:5614-5633 None:intergenic 50.0%
GCAACCAAGAGATTTCAGGC+AGG - tig0033439:5679-5698 None:intergenic 50.0%
GGCAACTCATACAGAAGCTG+AGG + tig0033439:5770-5789 Msa1451480:three_prime_UTR 50.0%
! GCACGGTGTTAGTATGGCAG+GGG + tig0033439:3058-3077 Msa1451480:exon 55.0%
AGAAGAAGCGAAGGAGGAGC+GGG - tig0033439:3144-3163 None:intergenic 55.0%
GAGAAGAAGCGAAGGAGGAG+CGG - tig0033439:3145-3164 None:intergenic 55.0%
GAGCTGAGAAGAAGCGAAGG+AGG - tig0033439:3150-3169 None:intergenic 55.0%
AGTACTAACTGAGGCTGGGG+TGG + tig0033439:3746-3765 Msa1451480:CDS 55.0%
GGTCTAAGTTCGATTCCCCC+CGG + tig0033439:4518-4537 Msa1451480:intron 55.0%
TCCACCGAAATTTGCACCGG+GGG - tig0033439:4537-4556 None:intergenic 55.0%
GTCCACCGAAATTTGCACCG+GGG - tig0033439:4538-4557 None:intergenic 55.0%
ATAGGGCTCCCGCAAGTAGA+CGG + tig0033439:4589-4608 Msa1451480:intron 55.0%
CAAACCCACCGTCTACTTGC+GGG - tig0033439:4600-4619 None:intergenic 55.0%
CCAAACCCACCGTCTACTTG+CGG - tig0033439:4601-4620 None:intergenic 55.0%
TGCGGCGAGTGAGAGGAAGA+TGG - tig0033439:3172-3191 None:intergenic 60.0%
CAGTGAATGCGGCGAGTGAG+AGG - tig0033439:3179-3198 None:intergenic 60.0%
CTCGTGCCAAGGTTAGGCAG+CGG + tig0033439:3838-3857 Msa1451480:intron 60.0%
CCACCGAAATTTGCACCGGG+GGG - tig0033439:4536-4555 None:intergenic 60.0%
! CCGCAAGTAGACGGTGGGTT+TGG + tig0033439:4598-4617 Msa1451480:intron 60.0%
ATGCTTACCTCTCGGGGCCA+AGG - tig0033439:5004-5023 None:intergenic 60.0%
CCCCCCGGTGCAAATTTCGG+TGG + tig0033439:4533-4552 Msa1451480:intron 65.0%
GGCTCCCGCAAGTAGACGGT+GGG + tig0033439:4593-4612 Msa1451480:intron 65.0%
! GACGGTGGGTTTGGACCCCT+CGG + tig0033439:4607-4626 Msa1451480:intron 65.0%
CTTTAGGCCTTGGCCCCGAG+AGG + tig0033439:4994-5013 Msa1451480:CDS 65.0%
GGGCTCCCGCAAGTAGACGG+TGG + tig0033439:4592-4611 Msa1451480:intron 70.0%
Chromosome Type Strat End Strand Name
tig0033439 gene 2998 6025 2998 ID=Msa1451480;Name=Msa1451480
tig0033439 mRNA 2998 6025 2998 ID=Msa1451480-mRNA-1;Parent=Msa1451480;Name=Msa1451480-mRNA-1;_AED=0.17;_eAED=0.17;_QI=73|0.83|0.71|1|1|1|7|341|306
tig0033439 exon 2998 3236 2998 ID=Msa1451480-mRNA-1:exon:18068;Parent=Msa1451480-mRNA-1
tig0033439 exon 3411 3568 3411 ID=Msa1451480-mRNA-1:exon:18069;Parent=Msa1451480-mRNA-1
tig0033439 exon 3729 3848 3729 ID=Msa1451480-mRNA-1:exon:18070;Parent=Msa1451480-mRNA-1
tig0033439 exon 3938 4045 3938 ID=Msa1451480-mRNA-1:exon:18071;Parent=Msa1451480-mRNA-1
tig0033439 exon 4694 4855 4694 ID=Msa1451480-mRNA-1:exon:18072;Parent=Msa1451480-mRNA-1
tig0033439 exon 4936 5015 4936 ID=Msa1451480-mRNA-1:exon:18073;Parent=Msa1451480-mRNA-1
tig0033439 exon 5558 6025 5558 ID=Msa1451480-mRNA-1:exon:18074;Parent=Msa1451480-mRNA-1
tig0033439 five_prime_UTR 2998 3070 2998 ID=Msa1451480-mRNA-1:five_prime_utr;Parent=Msa1451480-mRNA-1
tig0033439 CDS 3071 3236 3071 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 CDS 3411 3568 3411 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 CDS 3729 3848 3729 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 CDS 3938 4045 3938 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 CDS 4694 4855 4694 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 CDS 4936 5015 4936 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 CDS 5558 5684 5558 ID=Msa1451480-mRNA-1:cds;Parent=Msa1451480-mRNA-1
tig0033439 three_prime_UTR 5685 6025 5685 ID=Msa1451480-mRNA-1:three_prime_utr;Parent=Msa1451480-mRNA-1
Gene Sequence

>Msa1451480

ATGGCAGGGGCTGTTGTGTTTTTGAACACCACTTTGTTGTGCTCACAACCATCACCATGTCTGACTATTTCCCGCTCCTCCTTCGCTTCTTCTCAGCTCCATCTTCCTCTCACTCGCCGCATTCACTGCTCAACTTCTACTTCTACTTCATACCCTGCTGCCATAGACAAACTTCCAAATAGTATTGATTTTTCTGTAACTGGTGGTGCATATGATTTCACAAAAGCAACAACATCACTAACCAATGAGTTAATCACTTCATCAAAGAAAGTCACTCTTTTAAGGCATGGTCTTAGCACTTGGAATGCTGAAAGTAGAATTCAGGGAAGCTCAGATTTGTCAGTACTAACTGAGGCTGGGGTGGAGCAAGCAGAGAGATGCAAGAAAGCATTGGAAAATATTCACTTTGACCAATGTCTTGCCAGTCCAATATCTCGTGCCAAGCAAACTGCTGAAATTATATGGCAAGGAAGAGAAAAACCATTGGTTTACACTGATTCACTTAAAGAAATATCTCTCTATCACCTTGAAGGATTGAAAAATGGTGAGCCTTTTGCTTCTAATTTGGAGGCAGTGGATGCTAAGCAAATATATAAGGAGGAATACAGAATCTGGAGAGAAGATCCAGCCAATTTTGTCATGAATGGTAGATATCCTGTACAAGATCTCTGGATAGCTGCAAGAGATTGTTGGAAGGAAATTTTGTTGTCACCTGGAGAAAGCTTTCTAGTTGTGACTCACAAATCAATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTTGGCCCCGAGAGGTTTCGTTCCCTTGATATCAACAACGGTGGGATATGCGTATTCAACTTCAACACCAGAGGAGAAGCAATGCTCGAAGCTTTAAACTTGACAGCTCACATGTATAGCGATCATGTATATCCTGCCTGA

Protein sequence

>Msa1451480

MAGAVVFLNTTLLCSQPSPCLTISRSSFASSQLHLPLTRRIHCSTSTSTSYPAAIDKLPNSIDFSVTGGAYDFTKATTSLTNELITSSKKVTLLRHGLSTWNAESRIQGSSDLSVLTEAGVEQAERCKKALENIHFDQCLASPISRAKQTAEIIWQGREKPLVYTDSLKEISLYHLEGLKNGEPFASNLEAVDAKQIYKEEYRIWREDPANFVMNGRYPVQDLWIAARDCWKEILLSPGESFLVVTHKSILRALTCTALGLGPERFRSLDINNGGICVFNFNTRGEAMLEALNLTAHMYSDHVYPA*