AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087040 MtrunA17_Chr1g0203131 82.373 573 17 3 1 489 742 1314 0.0 917
Msa0087040 MtrunA17_Chr6g0472241 60.976 574 133 4 1 489 703 1270 0.0 691
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087040 AT4G20850.1 53.065 571 172 5 1 489 770 1326 0.0 577

Find 153 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAATAAGTCAACCTTATT+TGG 0.153575 1_2:-67850728 None:intergenic
AGCAGAAATTGAGTCTTTAA+AGG 0.172609 1_2:+67853485 Msa0087040:CDS
GCATGAAGACTTGCAGATTT+TGG 0.179437 1_2:+67849765 Msa0087040:CDS
TTGGCGTCTTCATGAAATTT+AGG 0.202555 1_2:-67846434 None:intergenic
ACAGGCTTGGTTATAGTAAT+TGG 0.210372 1_2:-67847768 None:intergenic
GTTCATATGTTTCTTCTTGC+AGG 0.216116 1_2:-67854302 None:intergenic
CGCCAACAAGCTTGAAGATT+TGG 0.221564 1_2:+67846451 Msa0087040:five_prime_UTR
CTGACCACTTACTACCTTAA+AGG 0.227567 1_2:-67848491 None:intergenic
CATAAAAGAAGGATTATTTC+TGG 0.243147 1_2:+67850471 Msa0087040:CDS
CTATATATTTCCTTTCTATA+TGG 0.245209 1_2:-67848236 None:intergenic
GACGTTAAGTGCACAAAATA+TGG 0.248807 1_2:+67853994 Msa0087040:CDS
TTTGTTTGATGAAAACTTTA+AGG 0.264275 1_2:+67853954 Msa0087040:CDS
TATGATGCAGGGTGCTTCTC+TGG 0.274528 1_2:-67850683 None:intergenic
TATGATTTCCGATTCAAATA+AGG 0.274716 1_2:+67849260 Msa0087040:CDS
TTATATAGTTCCTCCAAATA+AGG 0.279280 1_2:+67850715 Msa0087040:CDS
CATAAGCTTTAAGATATCTT+AGG 0.299823 1_2:+67854478 Msa0087040:three_prime_UTR
TGTAAACTGTATTCTCCTTT+GGG 0.304910 1_2:-67849457 None:intergenic
CTGCTAGTGCAAGCCCCTTC+TGG 0.307612 1_2:-67853467 None:intergenic
TTGTAAACTGTATTCTCCTT+TGG 0.312119 1_2:-67849458 None:intergenic
TTTCAGATACAAGGTCAAAT+TGG 0.315141 1_2:+67849158 Msa0087040:intron
AAATTCCAGATTGTGTTTCA+TGG 0.325625 1_2:+67848749 Msa0087040:intron
ACCTTGGGAAGCTTGTCTTT+TGG 0.334662 1_2:-67850501 None:intergenic
ATGAGTGAGCAGTAGATATT+CGG 0.340979 1_2:-67846532 None:intergenic
ACCTGTAGCAAATCTAAATA+AGG 0.344637 1_2:+67848865 Msa0087040:CDS
TTAGAATCTACAGGTCGATA+TGG 0.346444 1_2:-67848991 None:intergenic
TTCTACTCTCAGCATATTAG+TGG 0.352367 1_2:+67847656 Msa0087040:intron
AGCTAGTCATAGCTCAGTTT+TGG 0.361011 1_2:+67848521 Msa0087040:CDS
TGAGAGAAATTTAGAAGATA+AGG 0.369665 1_2:+67849816 Msa0087040:CDS
CCTTCTGTTGTAGCTGCAGC+CGG 0.371225 1_2:-67853886 None:intergenic
CCTCAAATACCATTTCTAAA+TGG 0.379337 1_2:+67849201 Msa0087040:CDS
AATGTCCAAGGGATGGTAAA+TGG 0.381665 1_2:-67854559 None:intergenic
TGCTACAGGTGTAAGTTTCT+CGG 0.382430 1_2:-67848852 None:intergenic
GGTAAAGTGCCTCTGCTAAC+TGG 0.383134 1_2:-67853446 None:intergenic
AACCAAATCTTCAAGCTTGT+TGG 0.387907 1_2:-67846453 None:intergenic
CAAGAGGTAATTGTACTTGA+TGG 0.390915 1_2:+67848785 Msa0087040:CDS
ACTTTAAGGAACTGAAGAAA+TGG 0.402563 1_2:+67853968 Msa0087040:CDS
TTTCATTAGGCCATATAGAA+AGG 0.410284 1_2:+67848226 Msa0087040:intron
CCCATACAACAAAACATGAT+TGG 0.410904 1_2:-67854508 None:intergenic
ATCAAAACTTGATAAGTTCA+TGG 0.410948 1_2:-67848292 None:intergenic
TCGCAATACCTTATTTGAAT+CGG 0.415181 1_2:-67849268 None:intergenic
AAAGCTTATGCTGATGCAAC+TGG 0.419701 1_2:-67854465 None:intergenic
CCCTAGAAAAGGGGTAGCTA+GGG 0.422084 1_2:-67854399 None:intergenic
TATGGAAAACTATCATTTGC+CGG 0.430490 1_2:+67850641 Msa0087040:CDS
TCATCCTTTGATTGCTCGAC+GGG 0.434636 1_2:-67853916 None:intergenic
CCATTTAGAAATGGTATTTG+AGG 0.440117 1_2:-67849201 None:intergenic
CTTATTGATAGCATAAAAGA+AGG 0.446003 1_2:+67850460 Msa0087040:intron
CATTGCAAAGACCTTTGAAA+TGG 0.447462 1_2:+67848425 Msa0087040:CDS
AAAACTATCATTTGCCGGAC+AGG 0.448302 1_2:+67850646 Msa0087040:CDS
GACTACGAATGTGGATCTTA+AGG 0.448785 1_2:+67848567 Msa0087040:CDS
AGACCATCACATAAATTGAT+AGG 0.451410 1_2:-67847681 None:intergenic
GTGCCTCTGCTAACTGGTCC+CGG 0.456843 1_2:-67853440 None:intergenic
GCTTCTCGTGTGTCACCAAC+AGG 0.458893 1_2:-67854020 None:intergenic
TGAGTGAGCAGTAGATATTC+GGG 0.462701 1_2:-67846531 None:intergenic
CAGATGGAAAACCCTAGAAA+AGG 0.464019 1_2:-67854410 None:intergenic
AGTTGATGCAGAAGCACTAC+TGG 0.464268 1_2:+67848826 Msa0087040:CDS
AGATGGAAAACCCTAGAAAA+GGG 0.464968 1_2:-67854409 None:intergenic
ATCTACTGCTCACTCATAAC+GGG 0.466851 1_2:+67846538 Msa0087040:five_prime_UTR
TTTGGAAAAGATGAAGCATC+TGG 0.467739 1_2:+67849783 Msa0087040:CDS
TCAGAGATGTTATTCGAGCC+AGG 0.467861 1_2:+67847825 Msa0087040:exon
TATATCCGACCATTTAGAAA+TGG 0.468165 1_2:-67849210 None:intergenic
TTTCAATTATATATGCATCA+AGG 0.469563 1_2:+67854531 Msa0087040:three_prime_UTR
CTTCTGTTGTAGCTGCAGCC+GGG 0.473046 1_2:-67853885 None:intergenic
GATTGCCATTTACCATCCCT+TGG 0.474976 1_2:+67854554 Msa0087040:three_prime_UTR
TTCAATTATATATGCATCAA+GGG 0.479928 1_2:+67854532 Msa0087040:three_prime_UTR
AAGTGCCACATGGTGCATCT+TGG 0.481551 1_2:+67848259 Msa0087040:CDS
CTTTAAGGAACTGAAGAAAT+GGG 0.482645 1_2:+67853969 Msa0087040:CDS
TAAGAAATTCGATATGATGC+AGG 0.483138 1_2:-67850695 None:intergenic
AGTGCCACATGGTGCATCTT+GGG 0.485268 1_2:+67848260 Msa0087040:CDS
GGTAATTAATGCAGCAAATG+AGG 0.489459 1_2:+67852730 Msa0087040:intron
ACAGTTTACAACTATATGTA+AGG 0.491738 1_2:+67849470 Msa0087040:CDS
TTCACCTTTAAGGTAGTAAG+TGG 0.494490 1_2:+67848487 Msa0087040:CDS
TATCTACTGCTCACTCATAA+CGG 0.496227 1_2:+67846537 Msa0087040:five_prime_UTR
GTTGATCACGGCCACAGGCT+TGG 0.496409 1_2:-67847781 None:intergenic
TAGAATCTACAGGTCGATAT+GGG 0.501545 1_2:-67848990 None:intergenic
ACCTTATTTAGATTTGCTAC+AGG 0.502093 1_2:-67848866 None:intergenic
ACCCTAGAAAAGGGGTAGCT+AGG 0.504771 1_2:-67854400 None:intergenic
CTCTCTGCAAGGATCTGTAT+TGG 0.504930 1_2:+67850604 Msa0087040:CDS
TACAACAAAACATGATTGGA+TGG 0.506608 1_2:-67854504 None:intergenic
ATGATGCAGGGTGCTTCTCT+GGG 0.506852 1_2:-67850682 None:intergenic
GTGATGAAGATCTCTTAGAA+TGG 0.512658 1_2:+67851794 Msa0087040:CDS
GATCGTGACAAACTCCCCTC+TGG 0.512764 1_2:+67849033 Msa0087040:CDS
AATAAGTCAACCTTATTTGG+AGG 0.512986 1_2:-67850725 None:intergenic
TGTGATTATTACAATGTCCA+AGG 0.515799 1_2:-67854571 None:intergenic
AAACTATCATTTGCCGGACA+GGG 0.515868 1_2:+67850647 Msa0087040:CDS
AAGCTCTCTTGCTTGAAGAA+TGG 0.520366 1_2:+67854327 Msa0087040:three_prime_UTR
AGAAGCGTAGTCAAAGGATT+GGG 0.521199 1_2:+67854037 Msa0087040:CDS
ACGTTAAGTGCACAAAATAT+GGG 0.522085 1_2:+67853995 Msa0087040:CDS
TTGGTCGGATCAATATCATA+TGG 0.525869 1_2:+67850623 Msa0087040:CDS
GTAATTGGAATTCTGAAAAG+AGG 0.525969 1_2:-67847753 None:intergenic
CAGTATTGATAGAGAAGAGC+TGG 0.528051 1_2:+67852760 Msa0087040:CDS
GAGAAGCGTAGTCAAAGGAT+TGG 0.531125 1_2:+67854036 Msa0087040:CDS
CATTTCAAAGGTCTTTGCAA+TGG 0.531844 1_2:-67848424 None:intergenic
AGGTTATGATTTCAGATACA+AGG 0.532117 1_2:+67849149 Msa0087040:intron
AAGAGGTAATTGTACTTGAT+GGG 0.538804 1_2:+67848786 Msa0087040:CDS
ATCATCCTTTGATTGCTCGA+CGG 0.539558 1_2:-67853917 None:intergenic
GGTCTGTTGATCACGGCCAC+AGG 0.540605 1_2:-67847786 None:intergenic
TACAAGGTCAAATTGGATGA+TGG 0.543337 1_2:+67849165 Msa0087040:CDS
CAGAGGCACTTTACCAGAAG+GGG 0.544874 1_2:+67853454 Msa0087040:CDS
AAATACCATTTCTAAATGGT+CGG 0.547424 1_2:+67849205 Msa0087040:CDS
ATAACACTCCGCCATTTCAA+AGG 0.548584 1_2:-67848436 None:intergenic
TTCTGTTGTAGCTGCAGCCG+GGG 0.548833 1_2:-67853884 None:intergenic
GCTTCTGCATCAACTCTGAC+AGG 0.550118 1_2:-67848818 None:intergenic
CCGGCTGCAGCTACAACAGA+AGG 0.550127 1_2:+67853886 Msa0087040:CDS
ATCTCTGAAAATGAAACTTG+TGG 0.552865 1_2:-67847810 None:intergenic
GTGATTATTACAATGTCCAA+GGG 0.554107 1_2:-67854570 None:intergenic
AGCAGAGGCACTTTACCAGA+AGG 0.554993 1_2:+67853452 Msa0087040:CDS
TGCCTCTGCTAACTGGTCCC+GGG 0.558075 1_2:-67853439 None:intergenic
GATCCTATCAATTTATGTGA+TGG 0.558273 1_2:+67847678 Msa0087040:five_prime_UTR
CTGCATTATTACGAAGTCTA+CGG 0.561030 1_2:+67847702 Msa0087040:five_prime_UTR
GCGCTGATCTTAGAATCTAC+AGG 0.561479 1_2:-67849000 None:intergenic
ACAGCAACCTGTTTCACAGA+TGG 0.562569 1_2:-67854426 None:intergenic
CTCTCTTGCTTGAAGAATGG+AGG 0.563172 1_2:+67854330 Msa0087040:three_prime_UTR
GGTAGTAAGTGGTCAGACAT+TGG 0.566035 1_2:+67848498 Msa0087040:CDS
TGCAAAGACCTTTGAAATGG+CGG 0.566121 1_2:+67848428 Msa0087040:CDS
CTGCAAGGATCTGTATTGGT+CGG 0.572910 1_2:+67850608 Msa0087040:CDS
GTCGAGCAATCAAAGGATGA+TGG 0.574648 1_2:+67853919 Msa0087040:CDS
ATCTGTGAAACAGGTTGCTG+TGG 0.579615 1_2:+67854428 Msa0087040:three_prime_UTR
AACTATCATTTGCCGGACAG+GGG 0.579701 1_2:+67850648 Msa0087040:CDS
GCTAGCATCTGCTTTCCAGA+GGG 0.584019 1_2:-67849048 None:intergenic
GCAGAGGCACTTTACCAGAA+GGG 0.587605 1_2:+67853453 Msa0087040:CDS
TCTGGATGATGAGGAAGCAC+AGG 0.591158 1_2:+67852808 Msa0087040:CDS
CAAGTTGTCTGTCTTGCTCA+AGG 0.599606 1_2:+67851819 Msa0087040:CDS
TTGTGGAGGTCTGTTGATCA+CGG 0.599808 1_2:-67847793 None:intergenic
TGAAACAGGTTGCTGTGGAA+TGG 0.603611 1_2:+67854433 Msa0087040:three_prime_UTR
AAATCCCGTCGAGCAATCAA+AGG 0.608560 1_2:+67853912 Msa0087040:CDS
TTATGCTGATGCAACTGGCA+AGG 0.610247 1_2:-67854460 None:intergenic
GTAAACTGTATTCTCCTTTG+GGG 0.619626 1_2:-67849456 None:intergenic
ACTATCATTTGCCGGACAGG+GGG 0.620586 1_2:+67850649 Msa0087040:CDS
TGCTAGCATCTGCTTTCCAG+AGG 0.621309 1_2:-67849049 None:intergenic
AAGAAATTCGATATGATGCA+GGG 0.621386 1_2:-67850694 None:intergenic
GAAAAGTGATCTGGATGATG+AGG 0.626476 1_2:+67852799 Msa0087040:CDS
GAGTCATGAGACTACGAATG+TGG 0.630387 1_2:+67848558 Msa0087040:CDS
CACACGAGAAGCGTAGTCAA+AGG 0.632931 1_2:+67854031 Msa0087040:CDS
GACTGCAAAGCACCATGGCG+TGG 0.633533 1_2:+67847729 Msa0087040:five_prime_UTR
CTGAAAAGAGGACCACGCCA+TGG 0.635156 1_2:-67847741 None:intergenic
TCTGAAAATGAAACTTGTGG+AGG 0.635613 1_2:-67847807 None:intergenic
TTATTACAATGTCCAAGGGA+TGG 0.641354 1_2:-67854566 None:intergenic
TGGTATAAAAGCTAGTCAAG+AGG 0.642711 1_2:+67848769 Msa0087040:CDS
TTTCCACAGAACTCTCTGCA+AGG 0.644061 1_2:+67850593 Msa0087040:intron
TTATAGCGAGTATATTCAAG+TGG 0.646443 1_2:+67849406 Msa0087040:intron
ACCAAAAGACAAGCTTCCCA+AGG 0.652371 1_2:+67850500 Msa0087040:CDS
AAAGGAGGTAGATAACTCCC+CGG 0.654856 1_2:+67853867 Msa0087040:intron
GATGGAAAACCCTAGAAAAG+GGG 0.660746 1_2:-67854408 None:intergenic
CCTAGAAAAGGGGTAGCTAG+GGG 0.662851 1_2:-67854398 None:intergenic
TAGCTACATATGAGAGACAG+TGG 0.664731 1_2:+67854360 Msa0087040:three_prime_UTR
AACTCTACAAAACTCCCCAA+AGG 0.668256 1_2:+67849442 Msa0087040:CDS
AATTACTATAACCAAGCCTG+TGG 0.677661 1_2:+67847770 Msa0087040:five_prime_UTR
AACCCGGGACCAGTTAGCAG+AGG 0.677676 1_2:+67853437 Msa0087040:CDS
CTAGCATCTGCTTTCCAGAG+GGG 0.683016 1_2:-67849047 None:intergenic
CACAAAATATGGGATCCTGT+TGG 0.693669 1_2:+67854005 Msa0087040:CDS
AAATATATAGAAGTGCCACA+TGG 0.704968 1_2:+67848249 Msa0087040:CDS
GTATTGACTGCAAAGCACCA+TGG 0.709040 1_2:+67847724 Msa0087040:five_prime_UTR
TCAACCCAAGATGCACCATG+TGG 0.743143 1_2:-67848264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAAATATATATTTA+AGG + chr1_2:67846920-67846939 Msa0087040:intron 0.0%
!! TAAAAAAATCATATGAAAAT+TGG + chr1_2:67847028-67847047 Msa0087040:intron 10.0%
!! CTTAAAAAATAATTGAATTT+GGG - chr1_2:67850113-67850132 None:intergenic 10.0%
!! TCTTAAAAAATAATTGAATT+TGG - chr1_2:67850114-67850133 None:intergenic 10.0%
!! TCTCAAATATAATTAAAAAT+GGG + chr1_2:67851321-67851340 Msa0087040:intron 10.0%
!! TTACACTTAAAATCTATAAA+AGG + chr1_2:67846851-67846870 Msa0087040:intron 15.0%
!! AATATGTAGGAATATAATTA+TGG - chr1_2:67846882-67846901 None:intergenic 15.0%
!!! CTTAATTTTTTTGTTTCATT+AGG + chr1_2:67848213-67848232 Msa0087040:intron 15.0%
!! AATATAAATGAAACAGATAA+TGG - chr1_2:67849103-67849122 None:intergenic 15.0%
!! TATAAATTATATCCTCTTTA+AGG - chr1_2:67850182-67850201 None:intergenic 15.0%
!! TAATTATATTTGAGAGAATA+TGG - chr1_2:67851316-67851335 None:intergenic 15.0%
!! CTCTCAAATATAATTAAAAA+TGG + chr1_2:67851320-67851339 Msa0087040:intron 15.0%
!! GTTAATAATATAATCCAAAA+CGG + chr1_2:67851343-67851362 Msa0087040:intron 15.0%
!! AAAAAACTTAAAAACTTACT+TGG - chr1_2:67852595-67852614 None:intergenic 15.0%
!! CTCTATTTATTCAAAATAAA+GGG + chr1_2:67852893-67852912 Msa0087040:intron 15.0%
!! TTAAATAGAAAGGATAAATA+TGG - chr1_2:67853003-67853022 None:intergenic 15.0%
!!! ATAAACTTTTAATACACTTT+TGG - chr1_2:67853254-67853273 None:intergenic 15.0%
!!! TTGTTTAGCTAAATTTTTTA+TGG + chr1_2:67853281-67853300 Msa0087040:intron 15.0%
!! AAGCTATAAATTAGTTGAAA+AGG - chr1_2:67846617-67846636 None:intergenic 20.0%
!!! TTGTTTAACTTGTTTATAAG+AGG + chr1_2:67846635-67846654 Msa0087040:intron 20.0%
!!! TTTTTTGTTCTATTTAACAG+AGG - chr1_2:67846784-67846803 None:intergenic 20.0%
!! AGTACAAAATCATCTTATAT+AGG + chr1_2:67847091-67847110 Msa0087040:intron 20.0%
!! AGCTACTTAAATAAATCTTT+AGG + chr1_2:67847202-67847221 Msa0087040:intron 20.0%
!! TTTAAGTAAGAAACATGATA+AGG - chr1_2:67847228-67847247 None:intergenic 20.0%
!! ATTAACATTGTCATAATTTG+AGG + chr1_2:67847331-67847350 Msa0087040:intron 20.0%
!! TTGAAACAAAACTATAGATT+AGG - chr1_2:67847615-67847634 None:intergenic 20.0%
!! AAAATTAAGACAATAAGCAT+TGG - chr1_2:67848202-67848221 None:intergenic 20.0%
!! CTATATATTTCCTTTCTATA+TGG - chr1_2:67848239-67848258 None:intergenic 20.0%
!! AAAGAAGAATTAAGAAAAGT+GGG + chr1_2:67848680-67848699 Msa0087040:intron 20.0%
!! AATTAGTAAAATCGTATCTT+CGG - chr1_2:67848723-67848742 None:intergenic 20.0%
!! TAAGGTTATCTTGTAAAATT+TGG + chr1_2:67848883-67848902 Msa0087040:intron 20.0%
!!! GTTGTATTTTGAAAACTTTA+TGG + chr1_2:67849845-67849864 Msa0087040:intron 20.0%
!! AAAATACATCATCAAAACTA+AGG + chr1_2:67850207-67850226 Msa0087040:intron 20.0%
!! TTTAAATGTAAACCTTTAAG+AGG - chr1_2:67850412-67850431 None:intergenic 20.0%
!! AATGTGTTACATATTAACAA+TGG - chr1_2:67850566-67850585 None:intergenic 20.0%
!! GTTAATATGTAACACATTTA+TGG + chr1_2:67850568-67850587 Msa0087040:intron 20.0%
!! AAAAAATGATAGATAAACCT+TGG + chr1_2:67851480-67851499 Msa0087040:intron 20.0%
!!! TTAAGTGAATTTTTTGGATA+TGG - chr1_2:67851622-67851641 None:intergenic 20.0%
!!! AGAACTTTAAGTGAATTTTT+TGG - chr1_2:67851628-67851647 None:intergenic 20.0%
!!! TTTGCTATTATTTGTAATCT+AGG - chr1_2:67851993-67852012 None:intergenic 20.0%
!!! CTTCAAAGATATTAGATTTT+AGG - chr1_2:67852243-67852262 None:intergenic 20.0%
!! ATGATAATTACATAATTGCA+CGG - chr1_2:67852555-67852574 None:intergenic 20.0%
!!! TTTTTTTAAATTCACGACAT+TGG + chr1_2:67852609-67852628 Msa0087040:intron 20.0%
!!! TTTTTTAAATTCACGACATT+GGG + chr1_2:67852610-67852629 Msa0087040:intron 20.0%
!! GTTGTGTAAATGATTTAAAA+AGG + chr1_2:67852674-67852693 Msa0087040:intron 20.0%
!!! CCTTTATTTTGAATAAATAG+AGG - chr1_2:67852895-67852914 None:intergenic 20.0%
!! CCTCTATTTATTCAAAATAA+AGG + chr1_2:67852892-67852911 Msa0087040:intron 20.0%
!!! TTTTGCACAATTAAATAGAA+AGG - chr1_2:67853013-67853032 None:intergenic 20.0%
!!! TTTTTTAGTTTGCATGTTAT+TGG + chr1_2:67853362-67853381 Msa0087040:intron 20.0%
!! TTTGTTTGATGAAAACTTTA+AGG + chr1_2:67853954-67853973 Msa0087040:CDS 20.0%
!! TTTCAATTATATATGCATCA+AGG + chr1_2:67854531-67854550 Msa0087040:three_prime_UTR 20.0%
!! TTCAATTATATATGCATCAA+GGG + chr1_2:67854532-67854551 Msa0087040:three_prime_UTR 20.0%
! ACAAAATCATCTTATATAGG+CGG + chr1_2:67847094-67847113 Msa0087040:intron 25.0%
!! CAACTTTGTTATGATTAAAG+AGG - chr1_2:67847259-67847278 None:intergenic 25.0%
!! ATAATTTGAGGCTTGTATTT+GGG + chr1_2:67847343-67847362 Msa0087040:intron 25.0%
!!! AATGTCTATTGTTACTTTCA+AGG + chr1_2:67847420-67847439 Msa0087040:intron 25.0%
!!! ATGTCTATTGTTACTTTCAA+GGG + chr1_2:67847421-67847440 Msa0087040:intron 25.0%
! ATTATAGAAAGACAAGTTCA+AGG - chr1_2:67847475-67847494 None:intergenic 25.0%
! TTTGAGAAGAGTTTATAAAG+AGG + chr1_2:67847885-67847904 Msa0087040:intron 25.0%
!!! AGAAAAAGTGTTGAAATTTG+AGG - chr1_2:67847957-67847976 None:intergenic 25.0%
!! TTCTAAAAACATTGCGTATA+GGG - chr1_2:67848100-67848119 None:intergenic 25.0%
!! ATTCTAAAAACATTGCGTAT+AGG - chr1_2:67848101-67848120 None:intergenic 25.0%
! TTAAGAATATAAACCGGAAT+TGG - chr1_2:67848172-67848191 None:intergenic 25.0%
! TTGGACTTAAGAATATAAAC+CGG - chr1_2:67848178-67848197 None:intergenic 25.0%
! ATCAAAACTTGATAAGTTCA+TGG - chr1_2:67848295-67848314 None:intergenic 25.0%
! ACTTAACTTCACATAATCTT+AGG - chr1_2:67848364-67848383 None:intergenic 25.0%
! AGATTATGTGAAGTTAAGTA+TGG + chr1_2:67848365-67848384 Msa0087040:intron 25.0%
!! GTAGAAAGCATGTTAAAAAA+AGG - chr1_2:67848392-67848411 None:intergenic 25.0%
! GAAAGAAGAATTAAGAAAAG+TGG + chr1_2:67848679-67848698 Msa0087040:intron 25.0%
! AATCACAAACATAAAGGAAT+AGG - chr1_2:67848911-67848930 None:intergenic 25.0%
! ATTCCTTTATGTTTGTGATT+TGG + chr1_2:67848911-67848930 Msa0087040:intron 25.0%
! TTCCTTTATGTTTGTGATTT+GGG + chr1_2:67848912-67848931 Msa0087040:intron 25.0%
!!! TTATATTCATGAGCTTTAGA+TGG + chr1_2:67849116-67849135 Msa0087040:intron 25.0%
! AAATACCATTTCTAAATGGT+CGG + chr1_2:67849205-67849224 Msa0087040:CDS 25.0%
! TATGATTTCCGATTCAAATA+AGG + chr1_2:67849260-67849279 Msa0087040:CDS 25.0%
! ACAGTTTACAACTATATGTA+AGG + chr1_2:67849470-67849489 Msa0087040:CDS 25.0%
!! GTTATTGAAGATAAGTTTTG+TGG + chr1_2:67849616-67849635 Msa0087040:intron 25.0%
!!! AGATAAGTTTTGTGGTTTTA+AGG + chr1_2:67849624-67849643 Msa0087040:intron 25.0%
! ATAACAAGTGGAATATTTCT+AGG + chr1_2:67849701-67849720 Msa0087040:intron 25.0%
!!! TCATGATGTTTTATTGTTTC+AGG + chr1_2:67849743-67849762 Msa0087040:intron 25.0%
! TGAGAGAAATTTAGAAGATA+AGG + chr1_2:67849816-67849835 Msa0087040:CDS 25.0%
! AGTTAAAGTGAAAGATACAA+GGG - chr1_2:67849874-67849893 None:intergenic 25.0%
! TTCCAAAAAATTTAAGCACA+TGG + chr1_2:67850003-67850022 Msa0087040:intron 25.0%
!!! GTATGTTTGTCTTTATTTTC+AGG + chr1_2:67850273-67850292 Msa0087040:intron 25.0%
!!! TTTATTTTCAGGACATCATT+CGG + chr1_2:67850284-67850303 Msa0087040:intron 25.0%
!! CTTATTGATAGCATAAAAGA+AGG + chr1_2:67850460-67850479 Msa0087040:intron 25.0%
! CATAAAAGAAGGATTATTTC+TGG + chr1_2:67850471-67850490 Msa0087040:CDS 25.0%
! AAGAAAAGAGAATATACCTT+GGG - chr1_2:67850519-67850538 None:intergenic 25.0%
! TAAGAAAAGAGAATATACCT+TGG - chr1_2:67850520-67850539 None:intergenic 25.0%
! TTATATAGTTCCTCCAAATA+AGG + chr1_2:67850715-67850734 Msa0087040:CDS 25.0%
! GTATGAATGTTAGTCATATT+CGG + chr1_2:67850994-67851013 Msa0087040:intron 25.0%
! AAAAATGTGGATAGAAAACA+AGG - chr1_2:67851031-67851050 None:intergenic 25.0%
!! TGTTTTCTATCCACATTTTT+TGG + chr1_2:67851031-67851050 Msa0087040:intron 25.0%
! GTTGAAGCTAATTATCTTTA+CGG + chr1_2:67851217-67851236 Msa0087040:intron 25.0%
! TAACTTAAGTTATCATTAGG+AGG - chr1_2:67851709-67851728 None:intergenic 25.0%
!!! ATATTAGATTTTAGGAGAAG+GGG - chr1_2:67852235-67852254 None:intergenic 25.0%
!!! GATATTAGATTTTAGGAGAA+GGG - chr1_2:67852236-67852255 None:intergenic 25.0%
!!! AGATATTAGATTTTAGGAGA+AGG - chr1_2:67852237-67852256 None:intergenic 25.0%
! AGATACTAAAGAATGTTGAT+TGG - chr1_2:67852465-67852484 None:intergenic 25.0%
! GGGAGAAAAAAATTAAAATC+AGG + chr1_2:67852913-67852932 Msa0087040:intron 25.0%
!! CTGCATGGAAAAATAAATTT+TGG + chr1_2:67853313-67853332 Msa0087040:intron 25.0%
!! AAGTTTTCATCAAACAAATC+TGG - chr1_2:67853952-67853971 None:intergenic 25.0%
! GAGAAGAAAAAAAGAAAAGA+AGG - chr1_2:67854149-67854168 None:intergenic 25.0%
!! AATGATCAAAGAGTATGTAA+AGG + chr1_2:67854185-67854204 Msa0087040:intron 25.0%
!! ATGATCAAAGAGTATGTAAA+GGG + chr1_2:67854186-67854205 Msa0087040:intron 25.0%
!!! CATAAGCTTTAAGATATCTT+AGG + chr1_2:67854478-67854497 Msa0087040:three_prime_UTR 25.0%
ACTTGTTTATAAGAGGTCTT+TGG + chr1_2:67846642-67846661 Msa0087040:intron 30.0%
CTTGTTTATAAGAGGTCTTT+GGG + chr1_2:67846643-67846662 Msa0087040:intron 30.0%
TATGAAAATTGGAATGCACT+CGG + chr1_2:67847039-67847058 Msa0087040:intron 30.0%
CAAAATCATCTTATATAGGC+GGG + chr1_2:67847095-67847114 Msa0087040:intron 30.0%
! CTTTGTTATGATTAAAGAGG+TGG - chr1_2:67847256-67847275 None:intergenic 30.0%
TATTACGTAATGAGCTAATG+AGG - chr1_2:67847288-67847307 None:intergenic 30.0%
! CATAATTTGAGGCTTGTATT+TGG + chr1_2:67847342-67847361 Msa0087040:intron 30.0%
! TAATTTGAGGCTTGTATTTG+GGG + chr1_2:67847344-67847363 Msa0087040:intron 30.0%
! GTTTGAAAGACAAGTTTTTG+AGG - chr1_2:67847520-67847539 None:intergenic 30.0%
GATCCTATCAATTTATGTGA+TGG + chr1_2:67847678-67847697 Msa0087040:five_prime_UTR 30.0%
AGACCATCACATAAATTGAT+AGG - chr1_2:67847684-67847703 None:intergenic 30.0%
! GTAATTGGAATTCTGAAAAG+AGG - chr1_2:67847756-67847775 None:intergenic 30.0%
! ATCTCTGAAAATGAAACTTG+TGG - chr1_2:67847813-67847832 None:intergenic 30.0%
!!! TTTCAACACTTTTTCTTCTC+TGG + chr1_2:67847961-67847980 Msa0087040:intron 30.0%
GAATTGGATTTACATCTACA+TGG + chr1_2:67848005-67848024 Msa0087040:intron 30.0%
AAGAAAATGCTCAAACATCA+AGG - chr1_2:67848061-67848080 None:intergenic 30.0%
! TTGATGTTTGAGCATTTTCT+TGG + chr1_2:67848060-67848079 Msa0087040:intron 30.0%
TCAAATTGAGTATCCAATTC+CGG + chr1_2:67848156-67848175 Msa0087040:intron 30.0%
!! TAAGACAATAAGCATTGGTT+TGG - chr1_2:67848197-67848216 None:intergenic 30.0%
TTTCATTAGGCCATATAGAA+AGG + chr1_2:67848226-67848245 Msa0087040:intron 30.0%
!! AAATATATAGAAGTGCCACA+TGG + chr1_2:67848249-67848268 Msa0087040:CDS 30.0%
TATCCACAAAAAATCTTCTG+GGG - chr1_2:67848320-67848339 None:intergenic 30.0%
GTATCCACAAAAAATCTTCT+GGG - chr1_2:67848321-67848340 None:intergenic 30.0%
TGTATCCACAAAAAATCTTC+TGG - chr1_2:67848322-67848341 None:intergenic 30.0%
!!! ATTTTTTGTGGATACAGTTC+AGG + chr1_2:67848326-67848345 Msa0087040:CDS 30.0%
! TACCTTAAAGGTGAAGTTTT+TGG - chr1_2:67848482-67848501 None:intergenic 30.0%
AAATTCCAGATTGTGTTTCA+TGG + chr1_2:67848749-67848768 Msa0087040:intron 30.0%
TTATACCATGAAACACAATC+TGG - chr1_2:67848757-67848776 None:intergenic 30.0%
AAGAGGTAATTGTACTTGAT+GGG + chr1_2:67848786-67848805 Msa0087040:CDS 30.0%
ACCTGTAGCAAATCTAAATA+AGG + chr1_2:67848865-67848884 Msa0087040:CDS 30.0%
!! ACCTTATTTAGATTTGCTAC+AGG - chr1_2:67848869-67848888 None:intergenic 30.0%
ATCCCAAATCACAAACATAA+AGG - chr1_2:67848917-67848936 None:intergenic 30.0%
! TGTGATTTGGGATAATAAAG+AGG + chr1_2:67848924-67848943 Msa0087040:intron 30.0%
TTAACATAAATTGAGAGACG+AGG - chr1_2:67848954-67848973 None:intergenic 30.0%
AGGTTATGATTTCAGATACA+AGG + chr1_2:67849149-67849168 Msa0087040:intron 30.0%
TTTCAGATACAAGGTCAAAT+TGG + chr1_2:67849158-67849177 Msa0087040:intron 30.0%
CCATTTAGAAATGGTATTTG+AGG - chr1_2:67849204-67849223 None:intergenic 30.0%
CCTCAAATACCATTTCTAAA+TGG + chr1_2:67849201-67849220 Msa0087040:CDS 30.0%
TATATCCGACCATTTAGAAA+TGG - chr1_2:67849213-67849232 None:intergenic 30.0%
! TCGCAATACCTTATTTGAAT+CGG - chr1_2:67849271-67849290 None:intergenic 30.0%
! CCTCATCTTTAAAAGCATAA+AGG - chr1_2:67849303-67849322 None:intergenic 30.0%
!! CCTTTATGCTTTTAAAGATG+AGG + chr1_2:67849300-67849319 Msa0087040:intron 30.0%
!! ATGCTTTTAAAGATGAGGAT+TGG + chr1_2:67849305-67849324 Msa0087040:intron 30.0%
!! TGCTTTTAAAGATGAGGATT+GGG + chr1_2:67849306-67849325 Msa0087040:intron 30.0%
TTATAGCGAGTATATTCAAG+TGG + chr1_2:67849406-67849425 Msa0087040:intron 30.0%
TGTAAACTGTATTCTCCTTT+GGG - chr1_2:67849460-67849479 None:intergenic 30.0%
TTGTAAACTGTATTCTCCTT+TGG - chr1_2:67849461-67849480 None:intergenic 30.0%
ACTAAATGGAAAGAAACACA+AGG - chr1_2:67849547-67849566 None:intergenic 30.0%
CAGAATAGCTATGAACTAAA+TGG - chr1_2:67849561-67849580 None:intergenic 30.0%
!! GTTGGAGTTTTAATAACAAG+TGG + chr1_2:67849689-67849708 Msa0087040:intron 30.0%
CAGTTAAAGTGAAAGATACA+AGG - chr1_2:67849875-67849894 None:intergenic 30.0%
CAGTGACATTTGTAATAACA+TGG + chr1_2:67849895-67849914 Msa0087040:intron 30.0%
!!! AGCCATGTGCTTAAATTTTT+TGG - chr1_2:67850008-67850027 None:intergenic 30.0%
CTGAATTAGAAGTAACATAG+AGG + chr1_2:67850026-67850045 Msa0087040:intron 30.0%
TGTGAAATGTGTACGTTAAT+GGG - chr1_2:67850156-67850175 None:intergenic 30.0%
TTGTGAAATGTGTACGTTAA+TGG - chr1_2:67850157-67850176 None:intergenic 30.0%
CATTTCACAATACCTTAAAG+AGG + chr1_2:67850167-67850186 Msa0087040:intron 30.0%
GAATTAATGTGAGGACTTAA+AGG - chr1_2:67850356-67850375 None:intergenic 30.0%
! TTCTCTTTTCTTAACCACTT+AGG + chr1_2:67850527-67850546 Msa0087040:intron 30.0%
ACATATTAACAATGGTCCTA+TGG - chr1_2:67850558-67850577 None:intergenic 30.0%
TATGGAAAACTATCATTTGC+CGG + chr1_2:67850641-67850660 Msa0087040:CDS 30.0%
AAGAAATTCGATATGATGCA+GGG - chr1_2:67850697-67850716 None:intergenic 30.0%
TAAGAAATTCGATATGATGC+AGG - chr1_2:67850698-67850717 None:intergenic 30.0%
! AATAAGTCAACCTTATTTGG+AGG - chr1_2:67850728-67850747 None:intergenic 30.0%
GAGAATAAGTCAACCTTATT+TGG - chr1_2:67850731-67850750 None:intergenic 30.0%
ATATGGAAGATTCACAACAT+GGG - chr1_2:67851299-67851318 None:intergenic 30.0%
AATATGGAAGATTCACAACA+TGG - chr1_2:67851300-67851319 None:intergenic 30.0%
! AAACTAGAATTTGTCCGTTT+TGG - chr1_2:67851360-67851379 None:intergenic 30.0%
! TATATTTTCGTATGCTTTGC+AGG + chr1_2:67851379-67851398 Msa0087040:intron 30.0%
TTTACACACACAAGATTATC+TGG + chr1_2:67851552-67851571 Msa0087040:intron 30.0%
!!! ATTTTTTGGATATGGAGAGA+TGG - chr1_2:67851614-67851633 None:intergenic 30.0%
GGCTAACTTAAGTTATCATT+AGG - chr1_2:67851712-67851731 None:intergenic 30.0%
! ATGATAACTTAAGTTAGCCT+TGG + chr1_2:67851713-67851732 Msa0087040:intron 30.0%
!! GATGCAAAAATAAAAGTGCT+AGG + chr1_2:67851754-67851773 Msa0087040:CDS 30.0%
!! CAAAAATAAAAGTGCTAGGA+GGG + chr1_2:67851758-67851777 Msa0087040:CDS 30.0%
ATCTAAACTCCTAGTTTAAG+TGG + chr1_2:67851854-67851873 Msa0087040:intron 30.0%
TATCTAACATTTGATTACCG+CGG - chr1_2:67852145-67852164 None:intergenic 30.0%
GAGACAATACTTACTGTTAA+TGG + chr1_2:67852328-67852347 Msa0087040:intron 30.0%
TTGTAATACGTGAACACAAA+GGG + chr1_2:67852354-67852373 Msa0087040:intron 30.0%
TGATACATAAGTAGGTAACA+GGG - chr1_2:67852865-67852884 None:intergenic 30.0%
TGTGCAAAATGCAAAACTTT+AGG + chr1_2:67853024-67853043 Msa0087040:intron 30.0%
GTGCAAAATGCAAAACTTTA+GGG + chr1_2:67853025-67853044 Msa0087040:intron 30.0%
!! TTATTTTTCCATGCAGAATG+AGG - chr1_2:67853309-67853328 None:intergenic 30.0%
AACAGTGTAAGTAGTAAATG+TGG - chr1_2:67853341-67853360 None:intergenic 30.0%
!! GGTTGATTCTATCTTTTTCT+TGG - chr1_2:67853421-67853440 None:intergenic 30.0%
AGAAAAAGATAGAATCAACC+CGG + chr1_2:67853421-67853440 Msa0087040:CDS 30.0%
AGCAGAAATTGAGTCTTTAA+AGG + chr1_2:67853485-67853504 Msa0087040:CDS 30.0%
TGCTTGTGCTATGTAAAATT+CGG + chr1_2:67853721-67853740 Msa0087040:intron 30.0%
! AAGAGTGTATTTGAGTGTTA+TGG + chr1_2:67853744-67853763 Msa0087040:intron 30.0%
! ACTTTAAGGAACTGAAGAAA+TGG + chr1_2:67853968-67853987 Msa0087040:CDS 30.0%
! CTTTAAGGAACTGAAGAAAT+GGG + chr1_2:67853969-67853988 Msa0087040:CDS 30.0%
ACGTTAAGTGCACAAAATAT+GGG + chr1_2:67853995-67854014 Msa0087040:CDS 30.0%
!! GTTAGAAAAAGCATTTCTTC+TGG - chr1_2:67854242-67854261 None:intergenic 30.0%
TACAACAAAACATGATTGGA+TGG - chr1_2:67854507-67854526 None:intergenic 30.0%
!! TCCAATCATGTTTTGTTGTA+TGG + chr1_2:67854507-67854526 Msa0087040:three_prime_UTR 30.0%
!! CCAATCATGTTTTGTTGTAT+GGG + chr1_2:67854508-67854527 Msa0087040:three_prime_UTR 30.0%
GTGATTATTACAATGTCCAA+GGG - chr1_2:67854573-67854592 None:intergenic 30.0%
TGTGATTATTACAATGTCCA+AGG - chr1_2:67854574-67854593 None:intergenic 30.0%
TTGGCGTCTTCATGAAATTT+AGG - chr1_2:67846437-67846456 None:intergenic 35.0%
AACCAAATCTTCAAGCTTGT+TGG - chr1_2:67846456-67846475 None:intergenic 35.0%
ATGAGTGAGCAGTAGATATT+CGG - chr1_2:67846535-67846554 None:intergenic 35.0%
TATCTACTGCTCACTCATAA+CGG + chr1_2:67846537-67846556 Msa0087040:five_prime_UTR 35.0%
CGAATAGAGTAAGATGATGA+AGG - chr1_2:67846589-67846608 None:intergenic 35.0%
AGTTTATAGTGTTTCTCCTC+TGG + chr1_2:67846686-67846705 Msa0087040:intron 35.0%
TAATTAGCTAGTTCAACCAG+AGG - chr1_2:67846705-67846724 None:intergenic 35.0%
CAAGTTCAAGGATAACGAAA+AGG - chr1_2:67847463-67847482 None:intergenic 35.0%
!! GAAAGACAAGTTTTTGAGGA+CGG - chr1_2:67847516-67847535 None:intergenic 35.0%
TTCTACTCTCAGCATATTAG+TGG + chr1_2:67847656-67847675 Msa0087040:intron 35.0%
CTGCATTATTACGAAGTCTA+CGG + chr1_2:67847702-67847721 Msa0087040:five_prime_UTR 35.0%
! ACAGGCTTGGTTATAGTAAT+TGG - chr1_2:67847771-67847790 None:intergenic 35.0%
AATTACTATAACCAAGCCTG+TGG + chr1_2:67847770-67847789 Msa0087040:five_prime_UTR 35.0%
TCTGAAAATGAAACTTGTGG+AGG - chr1_2:67847810-67847829 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + chr1_2:67847888-67847907 Msa0087040:intron 35.0%
TAACTCATCCTTACAAAACC+GGG - chr1_2:67847932-67847951 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_2:67847933-67847952 None:intergenic 35.0%
AAATGCTCAAACATCAAGGT+TGG - chr1_2:67848057-67848076 None:intergenic 35.0%
ATCCACAAAAAATCTTCTGG+GGG - chr1_2:67848319-67848338 None:intergenic 35.0%
CATTTCAAAGGTCTTTGCAA+TGG - chr1_2:67848427-67848446 None:intergenic 35.0%
! CATTGCAAAGACCTTTGAAA+TGG + chr1_2:67848425-67848444 Msa0087040:CDS 35.0%
TGCCAAAAACTTCACCTTTA+AGG + chr1_2:67848477-67848496 Msa0087040:CDS 35.0%
!! TTCACCTTTAAGGTAGTAAG+TGG + chr1_2:67848487-67848506 Msa0087040:CDS 35.0%
!! AGTTTTGGTCAAGTGGAATA+GGG + chr1_2:67848536-67848555 Msa0087040:CDS 35.0%
AGTCGCATAACCAAATATCT+GGG - chr1_2:67848631-67848650 None:intergenic 35.0%
TTCCTCTCTTTAACAACTTG+TGG + chr1_2:67848655-67848674 Msa0087040:intron 35.0%
TGGTATAAAAGCTAGTCAAG+AGG + chr1_2:67848769-67848788 Msa0087040:CDS 35.0%
CAAGAGGTAATTGTACTTGA+TGG + chr1_2:67848785-67848804 Msa0087040:CDS 35.0%
TAGAATCTACAGGTCGATAT+GGG - chr1_2:67848993-67849012 None:intergenic 35.0%
TTAGAATCTACAGGTCGATA+TGG - chr1_2:67848994-67849013 None:intergenic 35.0%
GAAATCATAACCTTCAGAAC+AGG - chr1_2:67849142-67849161 None:intergenic 35.0%
TACAAGGTCAAATTGGATGA+TGG + chr1_2:67849165-67849184 Msa0087040:CDS 35.0%
TTTAAAGATGAGGATTGGGA+AGG + chr1_2:67849310-67849329 Msa0087040:intron 35.0%
TTAAAGATGAGGATTGGGAA+GGG + chr1_2:67849311-67849330 Msa0087040:intron 35.0%
! CGTTTCAGATACTATTTCTC+AGG + chr1_2:67849346-67849365 Msa0087040:intron 35.0%
!! GAGTTTTGTAGAGTTTGGAT+AGG - chr1_2:67849437-67849456 None:intergenic 35.0%
GTAAACTGTATTCTCCTTTG+GGG - chr1_2:67849459-67849478 None:intergenic 35.0%
TGTAAGGTAAAACTCCTTCT+TGG + chr1_2:67849486-67849505 Msa0087040:intron 35.0%
AAGAAACACAAGGAACAATC+AGG - chr1_2:67849537-67849556 None:intergenic 35.0%
!!! TGTGGTTTTAAGGACTTTGA+AGG + chr1_2:67849634-67849653 Msa0087040:intron 35.0%
!! TTTTAAGGACTTTGAAGGCT+TGG + chr1_2:67849639-67849658 Msa0087040:intron 35.0%
AAAGCCTGCAATAAGAAAGT+TGG + chr1_2:67849671-67849690 Msa0087040:intron 35.0%
AACTCCAACTTTCTTATTGC+AGG - chr1_2:67849678-67849697 None:intergenic 35.0%
! TTTGGAAAAGATGAAGCATC+TGG + chr1_2:67849783-67849802 Msa0087040:CDS 35.0%
ACTGCAAATCTCTGGTTAAT+AGG + chr1_2:67849949-67849968 Msa0087040:intron 35.0%
ATTGCTAGATGAACTCAAGT+AGG + chr1_2:67850050-67850069 Msa0087040:intron 35.0%
TTGCTAGATGAACTCAAGTA+GGG + chr1_2:67850051-67850070 Msa0087040:intron 35.0%
AAGTAGGGAGAATTGGAATT+AGG + chr1_2:67850066-67850085 Msa0087040:intron 35.0%
TGAAATGTGTACGTTAATGG+GGG - chr1_2:67850154-67850173 None:intergenic 35.0%
GTGAAATGTGTACGTTAATG+GGG - chr1_2:67850155-67850174 None:intergenic 35.0%
TAAGTCCTCACATTAATTCC+AGG + chr1_2:67850357-67850376 Msa0087040:intron 35.0%
AAGTCCTCACATTAATTCCA+GGG + chr1_2:67850358-67850377 Msa0087040:intron 35.0%
! AAACCTTTAAGAGGTAGCTA+GGG - chr1_2:67850403-67850422 None:intergenic 35.0%
! TAAACCTTTAAGAGGTAGCT+AGG - chr1_2:67850404-67850423 None:intergenic 35.0%
CAAATGTCAGCACTATAACA+AGG - chr1_2:67850440-67850459 None:intergenic 35.0%
TTGGTCGGATCAATATCATA+TGG + chr1_2:67850623-67850642 Msa0087040:CDS 35.0%
TTCTGAACGTTTAGAAGAAG+AGG + chr1_2:67850972-67850991 Msa0087040:intron 35.0%
!!! TCTATCCACATTTTTTGGCA+TGG + chr1_2:67851036-67851055 Msa0087040:intron 35.0%
GTACATGACCAATAACAACA+AGG + chr1_2:67851170-67851189 Msa0087040:intron 35.0%
TCTTGTGTGTGTAAACTGTT+TGG - chr1_2:67851547-67851566 None:intergenic 35.0%
ATTATCTGGTGTCTTTGTAG+AGG + chr1_2:67851566-67851585 Msa0087040:intron 35.0%
TTATCTGGTGTCTTTGTAGA+GGG + chr1_2:67851567-67851586 Msa0087040:intron 35.0%
!! GCAAAAATAAAAGTGCTAGG+AGG + chr1_2:67851757-67851776 Msa0087040:CDS 35.0%
GTGATGAAGATCTCTTAGAA+TGG + chr1_2:67851794-67851813 Msa0087040:CDS 35.0%
GTGAGTTAACCACTTAAACT+AGG - chr1_2:67851866-67851885 None:intergenic 35.0%
AAGAGTCCTGAAACAAATGA+CGG - chr1_2:67851888-67851907 None:intergenic 35.0%
CTGTTATGTTACCTTGTAGT+CGG + chr1_2:67852015-67852034 Msa0087040:intron 35.0%
CAAAATCTCTTTGCAAGCAA+CGG - chr1_2:67852058-67852077 None:intergenic 35.0%
ATGTACCTCTTCATGATGAT+GGG - chr1_2:67852118-67852137 None:intergenic 35.0%
TATGTACCTCTTCATGATGA+TGG - chr1_2:67852119-67852138 None:intergenic 35.0%
AGGAAAGAAAACTAGAGACT+GGG - chr1_2:67852182-67852201 None:intergenic 35.0%
TAGGAAAGAAAACTAGAGAC+TGG - chr1_2:67852183-67852202 None:intergenic 35.0%
GTTTCATTGTGCTAACTGTT+AGG - chr1_2:67852202-67852221 None:intergenic 35.0%
CTTGTAATACGTGAACACAA+AGG + chr1_2:67852353-67852372 Msa0087040:intron 35.0%
AATTACATAATTGCACGGCT+AGG - chr1_2:67852550-67852569 None:intergenic 35.0%
CAATTACGAATATGCATTGC+AGG + chr1_2:67852709-67852728 Msa0087040:intron 35.0%
GGTAATTAATGCAGCAAATG+AGG + chr1_2:67852730-67852749 Msa0087040:intron 35.0%
! TTTTGCACTGAAAAGTGATC+TGG + chr1_2:67852790-67852809 Msa0087040:CDS 35.0%
GTGATACATAAGTAGGTAAC+AGG - chr1_2:67852866-67852885 None:intergenic 35.0%
GACTACAGTGATACATAAGT+AGG - chr1_2:67852873-67852892 None:intergenic 35.0%
CCTAATCCATATAGTTGACA+CGG + chr1_2:67853088-67853107 Msa0087040:intron 35.0%
GAAAAAGATAGAATCAACCC+GGG + chr1_2:67853422-67853441 Msa0087040:CDS 35.0%
CAGGGATATTGTCTAAATTC+TGG - chr1_2:67853573-67853592 None:intergenic 35.0%
GTAGCACTTCTTTATGTCTA+TGG - chr1_2:67853639-67853658 None:intergenic 35.0%
! GAATTTTACATAGCACAAGC+AGG - chr1_2:67853722-67853741 None:intergenic 35.0%
!! CTTGACTTGTACATTGTCAA+AGG + chr1_2:67853849-67853868 Msa0087040:intron 35.0%
GACGTTAAGTGCACAAAATA+TGG + chr1_2:67853994-67854013 Msa0087040:CDS 35.0%
GTTCATATGTTTCTTCTTGC+AGG - chr1_2:67854305-67854324 None:intergenic 35.0%
AGATGGAAAACCCTAGAAAA+GGG - chr1_2:67854412-67854431 None:intergenic 35.0%
CCCATACAACAAAACATGAT+TGG - chr1_2:67854511-67854530 None:intergenic 35.0%
TTATTACAATGTCCAAGGGA+TGG - chr1_2:67854569-67854588 None:intergenic 35.0%
TGAGTGAGCAGTAGATATTC+GGG - chr1_2:67846534-67846553 None:intergenic 40.0%
ATCTACTGCTCACTCATAAC+GGG + chr1_2:67846538-67846557 Msa0087040:five_prime_UTR 40.0%
!! TAGGCGGGTGACTTTTAAAA+TGG + chr1_2:67847110-67847129 Msa0087040:intron 40.0%
! CGAGTTTCTAGACTACAGAT+GGG - chr1_2:67847380-67847399 None:intergenic 40.0%
! TCGAGTTTCTAGACTACAGA+TGG - chr1_2:67847381-67847400 None:intergenic 40.0%
TTGATTGACTAATGCACACC+TGG - chr1_2:67847846-67847865 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr1_2:67847931-67847950 Msa0087040:intron 40.0%
!!! TACCCCCAGAAGATTTTTTG+TGG + chr1_2:67848314-67848333 Msa0087040:CDS 40.0%
GTCTTTGCAATGGACATATC+TGG - chr1_2:67848417-67848436 None:intergenic 40.0%
!! TGCAAAGACCTTTGAAATGG+CGG + chr1_2:67848428-67848447 Msa0087040:CDS 40.0%
ATAACACTCCGCCATTTCAA+AGG - chr1_2:67848439-67848458 None:intergenic 40.0%
CTGACCACTTACTACCTTAA+AGG - chr1_2:67848494-67848513 None:intergenic 40.0%
! AGCTAGTCATAGCTCAGTTT+TGG + chr1_2:67848521-67848540 Msa0087040:CDS 40.0%
!! ATAGCTCAGTTTTGGTCAAG+TGG + chr1_2:67848529-67848548 Msa0087040:CDS 40.0%
!! CAGTTTTGGTCAAGTGGAAT+AGG + chr1_2:67848535-67848554 Msa0087040:CDS 40.0%
GACTACGAATGTGGATCTTA+AGG + chr1_2:67848567-67848586 Msa0087040:CDS 40.0%
CATAACCAAATATCTGGGAG+GGG - chr1_2:67848626-67848645 None:intergenic 40.0%
GCATAACCAAATATCTGGGA+GGG - chr1_2:67848627-67848646 None:intergenic 40.0%
GAGTCGCATAACCAAATATC+TGG - chr1_2:67848632-67848651 None:intergenic 40.0%
CACCACAAGTTGTTAAAGAG+AGG - chr1_2:67848660-67848679 None:intergenic 40.0%
TGCTACAGGTGTAAGTTTCT+CGG - chr1_2:67848855-67848874 None:intergenic 40.0%
!! TTGGGGAGTTTTGTAGAGTT+TGG - chr1_2:67849442-67849461 None:intergenic 40.0%
AACTCTACAAAACTCCCCAA+AGG + chr1_2:67849442-67849461 Msa0087040:CDS 40.0%
! GCATGAAGACTTGCAGATTT+TGG + chr1_2:67849765-67849784 Msa0087040:CDS 40.0%
ACCAGAGATTTGCAGTTTGA+GGG - chr1_2:67849945-67849964 None:intergenic 40.0%
AACCAGAGATTTGCAGTTTG+AGG - chr1_2:67849946-67849965 None:intergenic 40.0%
TGAACTCAAGTAGGGAGAAT+TGG + chr1_2:67850059-67850078 Msa0087040:intron 40.0%
!! AGCTTTTTCTCTAAGCCAGA+TGG + chr1_2:67850310-67850329 Msa0087040:intron 40.0%
AGGAACCATTTCCCATCAAT+GGG - chr1_2:67850336-67850355 None:intergenic 40.0%
AAGGAACCATTTCCCATCAA+TGG - chr1_2:67850337-67850356 None:intergenic 40.0%
AACCACTTAGGCATTTCCAT+AGG + chr1_2:67850539-67850558 Msa0087040:intron 40.0%
AAAACTATCATTTGCCGGAC+AGG + chr1_2:67850646-67850665 Msa0087040:CDS 40.0%
AAACTATCATTTGCCGGACA+GGG + chr1_2:67850647-67850666 Msa0087040:CDS 40.0%
AGCATACAAGATCTTCAAGC+GGG - chr1_2:67850768-67850787 None:intergenic 40.0%
GAGCATACAAGATCTTCAAG+CGG - chr1_2:67850769-67850788 None:intergenic 40.0%
GTGTGTGAGATTGTGGAAAT+TGG - chr1_2:67850791-67850810 None:intergenic 40.0%
CTCGTCAATCTTCAAACACA+AGG - chr1_2:67850915-67850934 None:intergenic 40.0%
CTTGTGTTTGAAGATTGACG+AGG + chr1_2:67850913-67850932 Msa0087040:intron 40.0%
ACGTTCAGAAACAGTCTTCT+TGG - chr1_2:67850962-67850981 None:intergenic 40.0%
TTCAGCCATGCCAAAAAATG+TGG - chr1_2:67851044-67851063 None:intergenic 40.0%
!! TGTGCAGTCCTTGTTGTTAT+TGG - chr1_2:67851181-67851200 None:intergenic 40.0%
ATAACAACAAGGACTGCACA+TGG + chr1_2:67851181-67851200 Msa0087040:intron 40.0%
AACTCACCGTCATTTGTTTC+AGG + chr1_2:67851879-67851898 Msa0087040:intron 40.0%
CTTTGGATATTCCGACTACA+AGG - chr1_2:67852029-67852048 None:intergenic 40.0%
! CGTTGCTTGCAAAGAGATTT+TGG + chr1_2:67852056-67852075 Msa0087040:intron 40.0%
! GCTTGCAAAGAGATTTTGGA+AGG + chr1_2:67852060-67852079 Msa0087040:intron 40.0%
!! CAAAGAGATTTTGGAAGGCT+TGG + chr1_2:67852065-67852084 Msa0087040:intron 40.0%
!! TTTTGGAAGGCTTGGTTTCT+AGG + chr1_2:67852073-67852092 Msa0087040:intron 40.0%
CAAATCCCATCATCATGAAG+AGG + chr1_2:67852110-67852129 Msa0087040:intron 40.0%
AGAAAACTAGAGACTGGGAA+AGG - chr1_2:67852177-67852196 None:intergenic 40.0%
TAATACGTGAACACAAAGGG+TGG + chr1_2:67852357-67852376 Msa0087040:intron 40.0%
AATACGTGAACACAAAGGGT+GGG + chr1_2:67852358-67852377 Msa0087040:intron 40.0%
!! CAGTATTGATAGAGAAGAGC+TGG + chr1_2:67852760-67852779 Msa0087040:CDS 40.0%
GAAAAGTGATCTGGATGATG+AGG + chr1_2:67852799-67852818 Msa0087040:CDS 40.0%
TCCATGCAGTGAAATCTCAA+TGG + chr1_2:67852961-67852980 Msa0087040:intron 40.0%
ACCATTGAGATTTCACTGCA+TGG - chr1_2:67852965-67852984 None:intergenic 40.0%
CCGTGTCAACTATATGGATT+AGG - chr1_2:67853091-67853110 None:intergenic 40.0%
CAATTGCCGTGTCAACTATA+TGG - chr1_2:67853097-67853116 None:intergenic 40.0%
TTATGGAACCTCATTCTGCA+TGG + chr1_2:67853298-67853317 Msa0087040:intron 40.0%
! TATGGTTTGAGTTCAAGCGA+GGG - chr1_2:67853621-67853640 None:intergenic 40.0%
!! CTACTCTTCTTTTGAGAGCT+TGG + chr1_2:67853655-67853674 Msa0087040:intron 40.0%
GACTTGTACATTGTCAAAGG+AGG + chr1_2:67853852-67853871 Msa0087040:intron 40.0%
ATCATCCTTTGATTGCTCGA+CGG - chr1_2:67853920-67853939 None:intergenic 40.0%
CACAAAATATGGGATCCTGT+TGG + chr1_2:67854005-67854024 Msa0087040:CDS 40.0%
! AGAAGCGTAGTCAAAGGATT+GGG + chr1_2:67854037-67854056 Msa0087040:CDS 40.0%
AAGCTCTCTTGCTTGAAGAA+TGG + chr1_2:67854327-67854346 Msa0087040:three_prime_UTR 40.0%
TAGCTACATATGAGAGACAG+TGG + chr1_2:67854360-67854379 Msa0087040:three_prime_UTR 40.0%
GATGGAAAACCCTAGAAAAG+GGG - chr1_2:67854411-67854430 None:intergenic 40.0%
CAGATGGAAAACCCTAGAAA+AGG - chr1_2:67854413-67854432 None:intergenic 40.0%
AAAGCTTATGCTGATGCAAC+TGG - chr1_2:67854468-67854487 None:intergenic 40.0%
AATGTCCAAGGGATGGTAAA+TGG - chr1_2:67854562-67854581 None:intergenic 40.0%
CGCCAACAAGCTTGAAGATT+TGG + chr1_2:67846451-67846470 Msa0087040:five_prime_UTR 45.0%
!! GTATTGACTGCAAAGCACCA+TGG + chr1_2:67847724-67847743 Msa0087040:five_prime_UTR 45.0%
TTGTGGAGGTCTGTTGATCA+CGG - chr1_2:67847796-67847815 None:intergenic 45.0%
TCAGAGATGTTATTCGAGCC+AGG + chr1_2:67847825-67847844 Msa0087040:exon 45.0%
CTTACAAAACCGGGCTTGTA+AGG - chr1_2:67847923-67847942 None:intergenic 45.0%
!! CTTACAAGCCCGGTTTTGTA+AGG + chr1_2:67847921-67847940 Msa0087040:intron 45.0%
TCTTCTCTGGTAGCACACTA+AGG + chr1_2:67847974-67847993 Msa0087040:intron 45.0%
CACTAAGGCTGGAATGGAAT+TGG + chr1_2:67847989-67848008 Msa0087040:intron 45.0%
!!! AGGTGAAGTTTTTGGCAGCA+GGG - chr1_2:67848474-67848493 None:intergenic 45.0%
!!! AAGGTGAAGTTTTTGGCAGC+AGG - chr1_2:67848475-67848494 None:intergenic 45.0%
GGTAGTAAGTGGTCAGACAT+TGG + chr1_2:67848498-67848517 Msa0087040:CDS 45.0%
GAGTCATGAGACTACGAATG+TGG + chr1_2:67848558-67848577 Msa0087040:CDS 45.0%
ATTCTCCCCTCCCAGATATT+TGG + chr1_2:67848618-67848637 Msa0087040:intron 45.0%
CGCATAACCAAATATCTGGG+AGG - chr1_2:67848628-67848647 None:intergenic 45.0%
!! AGTTGATGCAGAAGCACTAC+TGG + chr1_2:67848826-67848845 Msa0087040:CDS 45.0%
! GCGCTGATCTTAGAATCTAC+AGG - chr1_2:67849003-67849022 None:intergenic 45.0%
CTTTAGATGGCCTGTTCTGA+AGG + chr1_2:67849129-67849148 Msa0087040:intron 45.0%
AAGGAACAATCAGGCATGTG+TGG - chr1_2:67849528-67849547 None:intergenic 45.0%
TCCCTCAAACTGCAAATCTC+TGG + chr1_2:67849941-67849960 Msa0087040:intron 45.0%
CGTACCCTGGAATTAATGTG+AGG - chr1_2:67850365-67850384 None:intergenic 45.0%
TTAATTCCAGGGTACGTTGC+TGG + chr1_2:67850369-67850388 Msa0087040:intron 45.0%
TAATTCCAGGGTACGTTGCT+GGG + chr1_2:67850370-67850389 Msa0087040:intron 45.0%
AGTCCCTAGCTACCTCTTAA+AGG + chr1_2:67850397-67850416 Msa0087040:intron 45.0%
! TTGGGAAGCTTGTCTTTTGG+TGG - chr1_2:67850501-67850520 None:intergenic 45.0%
ACCAAAAGACAAGCTTCCCA+AGG + chr1_2:67850500-67850519 Msa0087040:CDS 45.0%
! ACCTTGGGAAGCTTGTCTTT+TGG - chr1_2:67850504-67850523 None:intergenic 45.0%
GTCCTATGGAAATGCCTAAG+TGG - chr1_2:67850544-67850563 None:intergenic 45.0%
TTTCCACAGAACTCTCTGCA+AGG + chr1_2:67850593-67850612 Msa0087040:intron 45.0%
CTCTCTGCAAGGATCTGTAT+TGG + chr1_2:67850604-67850623 Msa0087040:CDS 45.0%
! CTGCAAGGATCTGTATTGGT+CGG + chr1_2:67850608-67850627 Msa0087040:CDS 45.0%
AACTATCATTTGCCGGACAG+GGG + chr1_2:67850648-67850667 Msa0087040:CDS 45.0%
!! TTAGCCTTGGCTTGTCTACT+AGG + chr1_2:67851726-67851745 Msa0087040:intron 45.0%
CAAGTTGTCTGTCTTGCTCA+AGG + chr1_2:67851819-67851838 Msa0087040:CDS 45.0%
CTAACATTTGATTACCGCGG+TGG - chr1_2:67852142-67852161 None:intergenic 45.0%
AAACTAGAGACTGGGAAAGG+AGG - chr1_2:67852174-67852193 None:intergenic 45.0%
ATACGTGAACACAAAGGGTG+GGG + chr1_2:67852359-67852378 Msa0087040:intron 45.0%
AATTGCACGGCTAGGAAGAT+AGG - chr1_2:67852542-67852561 None:intergenic 45.0%
!! TATCCCTGTACTGACTACTG+CGG + chr1_2:67853585-67853604 Msa0087040:intron 45.0%
! ATGGTTTGAGTTCAAGCGAG+GGG - chr1_2:67853620-67853639 None:intergenic 45.0%
! CTATGGTTTGAGTTCAAGCG+AGG - chr1_2:67853622-67853641 None:intergenic 45.0%
AAAGGAGGTAGATAACTCCC+CGG + chr1_2:67853867-67853886 Msa0087040:intron 45.0%
AAATCCCGTCGAGCAATCAA+AGG + chr1_2:67853912-67853931 Msa0087040:CDS 45.0%
TCATCCTTTGATTGCTCGAC+GGG - chr1_2:67853919-67853938 None:intergenic 45.0%
GTCGAGCAATCAAAGGATGA+TGG + chr1_2:67853919-67853938 Msa0087040:CDS 45.0%
! GAGAAGCGTAGTCAAAGGAT+TGG + chr1_2:67854036-67854055 Msa0087040:CDS 45.0%
CTCTCTTGCTTGAAGAATGG+AGG + chr1_2:67854330-67854349 Msa0087040:three_prime_UTR 45.0%
! GGGTTTTCCATCTGTGAAAC+AGG + chr1_2:67854419-67854438 Msa0087040:three_prime_UTR 45.0%
ACAGCAACCTGTTTCACAGA+TGG - chr1_2:67854429-67854448 None:intergenic 45.0%
ATCTGTGAAACAGGTTGCTG+TGG + chr1_2:67854428-67854447 Msa0087040:three_prime_UTR 45.0%
TGAAACAGGTTGCTGTGGAA+TGG + chr1_2:67854433-67854452 Msa0087040:three_prime_UTR 45.0%
TTATGCTGATGCAACTGGCA+AGG - chr1_2:67854463-67854482 None:intergenic 45.0%
! GATTGCCATTTACCATCCCT+TGG + chr1_2:67854554-67854573 Msa0087040:three_prime_UTR 45.0%
!!! TAATTTAAAATAAAATATGT+AGG - chr1_2:67846895-67846914 None:intergenic 5.0%
!! TAATTAAATAAATATATAGA+AGG - chr1_2:67850247-67850266 None:intergenic 5.0%
!! AGTTTTTGAGGACGGCGATG+TGG - chr1_2:67847508-67847527 None:intergenic 50.0%
AAAACCGGGCTTGTAAGGTG+AGG - chr1_2:67847918-67847937 None:intergenic 50.0%
GTAGCACACTAAGGCTGGAA+TGG + chr1_2:67847983-67848002 Msa0087040:intron 50.0%
AAGTGCCACATGGTGCATCT+TGG + chr1_2:67848259-67848278 Msa0087040:CDS 50.0%
AGTGCCACATGGTGCATCTT+GGG + chr1_2:67848260-67848279 Msa0087040:CDS 50.0%
TCAACCCAAGATGCACCATG+TGG - chr1_2:67848267-67848286 None:intergenic 50.0%
!!! GGTGAAGTTTTTGGCAGCAG+GGG - chr1_2:67848473-67848492 None:intergenic 50.0%
GCTTCTGCATCAACTCTGAC+AGG - chr1_2:67848821-67848840 None:intergenic 50.0%
CTAGCATCTGCTTTCCAGAG+GGG - chr1_2:67849050-67849069 None:intergenic 50.0%
GCTAGCATCTGCTTTCCAGA+GGG - chr1_2:67849051-67849070 None:intergenic 50.0%
TGCTAGCATCTGCTTTCCAG+AGG - chr1_2:67849052-67849071 None:intergenic 50.0%
CTCCTTCTTGGAACGTCTAC+TGG + chr1_2:67849498-67849517 Msa0087040:intron 50.0%
GTCCAGTAGACGTTCCAAGA+AGG - chr1_2:67849503-67849522 None:intergenic 50.0%
TAAGCCAGATGGCCCATTGA+TGG + chr1_2:67850321-67850340 Msa0087040:intron 50.0%
AAGCCAGATGGCCCATTGAT+GGG + chr1_2:67850322-67850341 Msa0087040:intron 50.0%
TTTCCCATCAATGGGCCATC+TGG - chr1_2:67850328-67850347 None:intergenic 50.0%
GATGGCCCATTGATGGGAAA+TGG + chr1_2:67850328-67850347 Msa0087040:intron 50.0%
! GGAAGCTTGTCTTTTGGTGG+TGG - chr1_2:67850498-67850517 None:intergenic 50.0%
GATCCTTGCAGAGAGTTCTG+TGG - chr1_2:67850599-67850618 None:intergenic 50.0%
ACTATCATTTGCCGGACAGG+GGG + chr1_2:67850649-67850668 Msa0087040:CDS 50.0%
! GTTTTTATGCTCCCCCTGTC+CGG - chr1_2:67850663-67850682 None:intergenic 50.0%
! ATGATGCAGGGTGCTTCTCT+GGG - chr1_2:67850685-67850704 None:intergenic 50.0%
! TATGATGCAGGGTGCTTCTC+TGG - chr1_2:67850686-67850705 None:intergenic 50.0%
CTTCAAGCGGGTAAGTGCAT+AGG - chr1_2:67850756-67850775 None:intergenic 50.0%
AACACGCGTGTGTGAGATTG+TGG - chr1_2:67850798-67850817 None:intergenic 50.0%
ACAATCTCACACACGCGTGT+TGG + chr1_2:67850797-67850816 Msa0087040:intron 50.0%
ACCTTGGCTGTCATGATGAG+TGG + chr1_2:67851496-67851515 Msa0087040:intron 50.0%
TCCACTCATCATGACAGCCA+AGG - chr1_2:67851500-67851519 None:intergenic 50.0%
GCAAGCAACGGAGTGTACTT+TGG - chr1_2:67852046-67852065 None:intergenic 50.0%
! TGAAGAGGTACATACCACCG+CGG + chr1_2:67852125-67852144 Msa0087040:intron 50.0%
! TCTGGATGATGAGGAAGCAC+AGG + chr1_2:67852808-67852827 Msa0087040:CDS 50.0%
! GGTAAAGTGCCTCTGCTAAC+TGG - chr1_2:67853449-67853468 None:intergenic 50.0%
!! AGCAGAGGCACTTTACCAGA+AGG + chr1_2:67853452-67853471 Msa0087040:CDS 50.0%
!! GCAGAGGCACTTTACCAGAA+GGG + chr1_2:67853453-67853472 Msa0087040:CDS 50.0%
!! CAGAGGCACTTTACCAGAAG+GGG + chr1_2:67853454-67853473 Msa0087040:CDS 50.0%
TTGCCGCAGTAGTCAGTACA+GGG - chr1_2:67853591-67853610 None:intergenic 50.0%
ATTGCCGCAGTAGTCAGTAC+AGG - chr1_2:67853592-67853611 None:intergenic 50.0%
! CACACGAGAAGCGTAGTCAA+AGG + chr1_2:67854031-67854050 Msa0087040:CDS 50.0%
CCTAGAAAAGGGGTAGCTAG+GGG - chr1_2:67854401-67854420 None:intergenic 50.0%
CCCTAGAAAAGGGGTAGCTA+GGG - chr1_2:67854402-67854421 None:intergenic 50.0%
! CCCTAGCTACCCCTTTTCTA+GGG + chr1_2:67854399-67854418 Msa0087040:three_prime_UTR 50.0%
ACCCTAGAAAAGGGGTAGCT+AGG - chr1_2:67854403-67854422 None:intergenic 50.0%
TTTGAGGACGGCGATGTGGA+AGG - chr1_2:67847504-67847523 None:intergenic 55.0%
CTGAAAAGAGGACCACGCCA+TGG - chr1_2:67847744-67847763 None:intergenic 55.0%
CACTCCTCACCTTACAAGCC+CGG + chr1_2:67847911-67847930 Msa0087040:intron 55.0%
CTCTGGTAGCACACTAAGGC+TGG + chr1_2:67847978-67847997 Msa0087040:intron 55.0%
!!! GAAGTTTTTGGCAGCAGGGG+AGG - chr1_2:67848470-67848489 None:intergenic 55.0%
GATCGTGACAAACTCCCCTC+TGG + chr1_2:67849033-67849052 Msa0087040:CDS 55.0%
TGTAACCCAGCAACGTACCC+TGG - chr1_2:67850378-67850397 None:intergenic 55.0%
CACTCAAGCTGCACGCTGTA+GGG + chr1_2:67850830-67850849 Msa0087040:intron 55.0%
CGCACCTAGTAGACAAGCCA+AGG - chr1_2:67851733-67851752 None:intergenic 55.0%
TTCTGTTGTAGCTGCAGCCG+GGG - chr1_2:67853887-67853906 None:intergenic 55.0%
CTTCTGTTGTAGCTGCAGCC+GGG - chr1_2:67853888-67853907 None:intergenic 55.0%
CCTTCTGTTGTAGCTGCAGC+CGG - chr1_2:67853889-67853908 None:intergenic 55.0%
GCTTCTCGTGTGTCACCAAC+AGG - chr1_2:67854023-67854042 None:intergenic 55.0%
! CCCCTAGCTACCCCTTTTCT+AGG + chr1_2:67854398-67854417 Msa0087040:three_prime_UTR 55.0%
! GACTGCAAAGCACCATGGCG+TGG + chr1_2:67847729-67847748 Msa0087040:five_prime_UTR 60.0%
GTTGATCACGGCCACAGGCT+TGG - chr1_2:67847784-67847803 None:intergenic 60.0%
GGTCTGTTGATCACGGCCAC+AGG - chr1_2:67847789-67847808 None:intergenic 60.0%
GCACTCAAGCTGCACGCTGT+AGG + chr1_2:67850829-67850848 Msa0087040:intron 60.0%
AACCCGGGACCAGTTAGCAG+AGG + chr1_2:67853437-67853456 Msa0087040:CDS 60.0%
TGCCTCTGCTAACTGGTCCC+GGG - chr1_2:67853442-67853461 None:intergenic 60.0%
GTGCCTCTGCTAACTGGTCC+CGG - chr1_2:67853443-67853462 None:intergenic 60.0%
CTGCTAGTGCAAGCCCCTTC+TGG - chr1_2:67853470-67853489 None:intergenic 60.0%
CCGGCTGCAGCTACAACAGA+AGG + chr1_2:67853886-67853905 Msa0087040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67846414 67854599 67846414 ID=Msa0087040;Name=Msa0087040
chr1_2 mRNA 67846414 67854599 67846414 ID=Msa0087040-mRNA-1;Parent=Msa0087040;Name=Msa0087040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=322|0.8|1|1|0.86|0.75|16|333|489
chr1_2 exon 67846414 67846572 67846414 ID=Msa0087040-mRNA-1:exon:23060;Parent=Msa0087040-mRNA-1
chr1_2 exon 67847668 67847846 67847668 ID=Msa0087040-mRNA-1:exon:23061;Parent=Msa0087040-mRNA-1
chr1_2 exon 67848235 67848347 67848235 ID=Msa0087040-mRNA-1:exon:23062;Parent=Msa0087040-mRNA-1
chr1_2 exon 67848418 67848588 67848418 ID=Msa0087040-mRNA-1:exon:23063;Parent=Msa0087040-mRNA-1
chr1_2 exon 67848758 67848886 67848758 ID=Msa0087040-mRNA-1:exon:23064;Parent=Msa0087040-mRNA-1
chr1_2 exon 67848982 67849082 67848982 ID=Msa0087040-mRNA-1:exon:23065;Parent=Msa0087040-mRNA-1
chr1_2 exon 67849164 67849281 67849164 ID=Msa0087040-mRNA-1:exon:23066;Parent=Msa0087040-mRNA-1
chr1_2 exon 67849412 67849491 67849412 ID=Msa0087040-mRNA-1:exon:23067;Parent=Msa0087040-mRNA-1
chr1_2 exon 67849765 67849837 67849765 ID=Msa0087040-mRNA-1:exon:23068;Parent=Msa0087040-mRNA-1
chr1_2 exon 67850471 67850521 67850471 ID=Msa0087040-mRNA-1:exon:23069;Parent=Msa0087040-mRNA-1
chr1_2 exon 67850602 67850736 67850602 ID=Msa0087040-mRNA-1:exon:23070;Parent=Msa0087040-mRNA-1
chr1_2 exon 67851748 67851840 67851748 ID=Msa0087040-mRNA-1:exon:23071;Parent=Msa0087040-mRNA-1
chr1_2 exon 67852731 67852829 67852731 ID=Msa0087040-mRNA-1:exon:23072;Parent=Msa0087040-mRNA-1
chr1_2 exon 67853414 67853506 67853414 ID=Msa0087040-mRNA-1:exon:23073;Parent=Msa0087040-mRNA-1
chr1_2 exon 67853871 67854071 67853871 ID=Msa0087040-mRNA-1:exon:23074;Parent=Msa0087040-mRNA-1
chr1_2 exon 67854270 67854599 67854270 ID=Msa0087040-mRNA-1:exon:23075;Parent=Msa0087040-mRNA-1
chr1_2 five_prime_UTR 67846414 67846572 67846414 ID=Msa0087040-mRNA-1:five_prime_utr;Parent=Msa0087040-mRNA-1
chr1_2 five_prime_UTR 67847668 67847830 67847668 ID=Msa0087040-mRNA-1:five_prime_utr;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67847831 67847846 67847831 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67848235 67848347 67848235 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67848418 67848588 67848418 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67848758 67848886 67848758 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67848982 67849082 67848982 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67849164 67849281 67849164 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67849412 67849491 67849412 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67849765 67849837 67849765 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67850471 67850521 67850471 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67850602 67850736 67850602 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67851748 67851840 67851748 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67852731 67852829 67852731 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67853414 67853506 67853414 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 CDS 67853871 67854068 67853871 ID=Msa0087040-mRNA-1:cds;Parent=Msa0087040-mRNA-1
chr1_2 three_prime_UTR 67854069 67854071 67854069 ID=Msa0087040-mRNA-1:three_prime_utr;Parent=Msa0087040-mRNA-1
chr1_2 three_prime_UTR 67854270 67854599 67854270 ID=Msa0087040-mRNA-1:three_prime_utr;Parent=Msa0087040-mRNA-1
Gene Sequence

>Msa0087040

ATGTTATTCGAGCCAGGCCATATAGAAAGGAAATATATAGAAGTGCCACATGGTGCATCTTGGGTTGAAGCAACCATGAACTTATCAAGTTTTGATACCCCCAGAAGATTTTTTGTGGATACAGTTCAGATATGTCCATTGCAAAGACCTTTGAAATGGCGGAGTGTTATAACTTTTTCCTCCCCTGCTGCCAAAAACTTCACCTTTAAGGTAGTAAGTGGTCAGACATTGGAGCTAGTCATAGCTCAGTTTTGGTCAAGTGGAATAGGGAGTCATGAGACTACGAATGTGGATCTTAAGATTGTGTTTCATGGTATAAAAGCTAGTCAAGAGGTAATTGTACTTGATGGGAGTGAAGCACCTGTCAGAGTTGATGCAGAAGCACTACTGGCATCCGAGAAACTTACACCTGTAGCAAATCTAAATAAGATAAGAGTCCCATATCGACCTGTAGATTCTAAGATCAGCGCACTTTCAAATGATCGTGACAAACTCCCCTCTGGAAAGCAGATGCTAGCACTGACATTAACATACAAGGTCAAATTGGATGATGGAGCTGAAATAAAACCTCAAATACCATTTCTAAATGGTCGGATATATGACACTAAGTTTGAGTCTCAGTTTTATATGATTTCCGATTCAAATAAGCGAGTATATTCAAGTGGAGATGCCTATCCAAACTCTACAAAACTCCCCAAAGGAGAATACAGTTTACAACTATATGTAAGGCATGAAGACTTGCAGATTTTGGAAAAGATGAAGCATCTGGTGTTATTCATTGAGAGAAATTTAGAAGATAAGCATAAAAGAAGGATTATTTCTGGTCCACCACCAAAAGACAAGCTTCCCAAGAACTCTCTGCAAGGATCTGTATTGGTCGGATCAATATCATATGGAAAACTATCATTTGCCGGACAGGGGGAGCATAAAAACCCAGAGAAGCACCCTGCATCATATCGAATTTCTTATATAGTTCCTCCAAATAAGGTGCGAGATGCAAAAATAAAAGTGCTAGGAGGGATAAAACAAGAAAGTGATGAAGATCTCTTAGAATGGAACAAGTTGTCTGTCTTGCTCAAGGTAATTAATGCAGCAAATGAGGTGATCGACAGTATTGATAGAGAAGAGCTGGCAAAAAATTTTGCACTGAAAAGTGATCTGGATGATGAGGAAGCACAGAAAACCAAGAAAAAGATAGAATCAACCCGGGACCAGTTAGCAGAGGCACTTTACCAGAAGGGGCTTGCACTAGCAGAAATTGAGTCTTTAAAGGAGGTAGATAACTCCCCGGCTGCAGCTACAACAGAAGGTGCAAATCCCGTCGAGCAATCAAAGGATGATGGCATTCATCCAGATTTGTTTGATGAAAACTTTAAGGAACTGAAGAAATGGGTTGACGTTAAGTGCACAAAATATGGGATCCTGTTGGTGACACACGAGAAGCGTAGTCAAAGGATTGGGACAGCATGA

Protein sequence

>Msa0087040

MLFEPGHIERKYIEVPHGASWVEATMNLSSFDTPRRFFVDTVQICPLQRPLKWRSVITFSSPAAKNFTFKVVSGQTLELVIAQFWSSGIGSHETTNVDLKIVFHGIKASQEVIVLDGSEAPVRVDAEALLASEKLTPVANLNKIRVPYRPVDSKISALSNDRDKLPSGKQMLALTLTYKVKLDDGAEIKPQIPFLNGRIYDTKFESQFYMISDSNKRVYSSGDAYPNSTKLPKGEYSLQLYVRHEDLQILEKMKHLVLFIERNLEDKHKRRIISGPPPKDKLPKNSLQGSVLVGSISYGKLSFAGQGEHKNPEKHPASYRISYIVPPNKVRDAKIKVLGGIKQESDEDLLEWNKLSVLLKVINAANEVIDSIDREELAKNFALKSDLDDEEAQKTKKKIESTRDQLAEALYQKGLALAEIESLKEVDNSPAAATTEGANPVEQSKDDGIHPDLFDENFKELKKWVDVKCTKYGILLVTHEKRSQRIGTA*