AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533270 MtrunA17_Chr4g0006851 89.474 342 14 2 2 322 4 344 0.0 578
Msa0533270 MtrunA17_Chr7g0242311 71.765 340 66 4 7 322 9 342 3.46e-162 457
Msa0533270 MtrunA17_Chr4g0063561 34.766 256 144 6 88 320 123 378 5.78e-43 152
Msa0533270 MtrunA17_Chr4g0063561 32.298 161 102 4 166 320 122 281 6.59e-14 72.0
Msa0533270 MtrunA17_Chr4g0063561 30.556 180 102 7 89 247 219 396 2.77e-12 67.0
Msa0533270 MtrunA17_Chr1g0149111 37.354 257 136 9 88 320 139 394 1.91e-41 149
Msa0533270 MtrunA17_Chr1g0149111 27.950 161 112 1 166 322 138 298 1.20e-14 74.3
Msa0533270 MtrunA17_Chr1g0149111 32.086 187 89 8 88 245 233 410 4.00e-13 69.7
Msa0533270 MtrunA17_Chr3g0137941 36.471 255 137 9 90 320 124 377 2.33e-39 143
Msa0533270 MtrunA17_Chr3g0137941 26.708 161 114 1 166 322 121 281 2.99e-14 72.8
Msa0533270 MtrunA17_Chr3g0137941 29.947 187 97 6 86 245 214 393 1.24e-12 68.2
Msa0533270 MtrunA17_Chr3g0131501 32.028 281 155 9 75 320 185 464 2.26e-36 136
Msa0533270 MtrunA17_Chr3g0131501 30.270 185 105 4 85 245 296 480 4.81e-14 72.8
Msa0533270 MtrunA17_Chr8g0347451 30.556 288 146 8 88 321 51 338 5.96e-35 130
Msa0533270 MtrunA17_Chr8g0347451 30.303 198 96 8 90 245 156 353 3.73e-12 66.6
Msa0533270 MtrunA17_Chr7g0240341 30.272 294 160 9 69 321 10 299 1.16e-34 129
Msa0533270 MtrunA17_Chr5g0396801 30.240 334 164 9 40 321 7 323 1.57e-34 129
Msa0533270 MtrunA17_Chr5g0396801 30.457 197 95 8 90 245 143 338 3.82e-13 69.3
Msa0533270 MtrunA17_Chr8g0385571 31.698 265 144 8 88 320 227 486 3.41e-34 130
Msa0533270 MtrunA17_Chr8g0385571 29.730 185 106 4 85 245 318 502 2.34e-15 76.6
Msa0533270 MtrunA17_Chr3g0135861 32.292 288 149 7 81 322 28 315 1.78e-33 126
Msa0533270 MtrunA17_Chr6g0488081 29.450 309 150 8 64 322 2 292 4.16e-31 119
Msa0533270 MtrunA17_Chr7g0252401 32.197 264 145 10 88 322 207 465 5.40e-31 121
Msa0533270 MtrunA17_Chr7g0252401 29.379 177 106 3 88 245 303 479 3.06e-17 82.0
Msa0533270 MtrunA17_Chr5g0436041 31.502 273 148 7 88 321 34 306 2.29e-26 106
Msa0533270 MtrunA17_Chr3g0135801 30.037 273 147 8 88 318 34 304 1.05e-25 104
Msa0533270 MtrunA17_Chr2g0296061 28.425 292 148 8 90 320 17 308 5.10e-25 102
Msa0533270 MtrunA17_Chr2g0296061 28.090 178 103 4 168 320 16 193 3.54e-12 66.2
Msa0533270 MtrunA17_Chr4g0067231 26.531 294 153 8 90 320 16 309 1.07e-23 99.4
Msa0533270 MtrunA17_Chr4g0067231 28.333 180 102 4 168 320 15 194 5.94e-14 71.6
Msa0533270 MtrunA17_Chr3g0115801 33.577 274 139 9 90 322 118 389 8.74e-23 97.8
Msa0533270 MtrunA17_Chr3g0115801 28.395 162 110 3 166 322 115 275 2.59e-12 67.0
Msa0533270 MtrunA17_Chr8g0382201 32.246 276 140 11 90 322 197 468 4.55e-22 96.3
Msa0533270 MtrunA17_Chr8g0393031 28.938 273 150 10 93 322 20 291 5.50e-21 91.7
Msa0533270 MtrunA17_Chr4g0000261 25.532 282 171 7 80 322 58 339 1.54e-20 90.9
Msa0533270 MtrunA17_Chr8g0352031 30.769 286 156 8 74 317 52 337 7.87e-19 86.3
Msa0533270 MtrunA17_Chr3g0088301 31.227 269 146 9 88 317 93 361 4.81e-18 84.0
Msa0533270 MtrunA17_Chr6g0488341 28.440 218 103 6 133 322 25 217 2.48e-17 80.1
Msa0533270 MtrunA17_Chr5g0431531 28.030 264 157 8 87 320 38 298 1.24e-16 79.3
Msa0533270 MtrunA17_Chr1g0201361 27.037 270 180 10 54 313 19 281 1.46e-16 79.0
Msa0533270 MtrunA17_Chr4g0040341 31.227 269 146 8 88 317 75 343 2.25e-16 79.0
Msa0533270 MtrunA17_Chr8g0383321 26.160 237 162 8 89 316 53 285 4.76e-16 77.8
Msa0533270 MtrunA17_Chr2g0328891 30.855 269 147 8 88 317 66 334 2.01e-15 76.3
Msa0533270 MtrunA17_Chr7g0269701 29.151 271 148 11 90 320 24 290 2.45e-15 75.5
Msa0533270 MtrunA17_Chr7g0269701 29.630 162 98 4 168 313 23 184 7.47e-13 68.2
Msa0533270 MtrunA17_Chr8g0386871 28.049 246 154 8 89 313 321 564 3.98e-15 76.3
Msa0533270 MtrunA17_Chr6g0463041 28.019 207 93 5 167 322 25 226 5.34e-14 70.9
Msa0533270 MtrunA17_Chr1g0195101 28.947 266 143 12 96 320 27 287 3.28e-13 69.3
Msa0533270 MtrunA17_Chr8g0372531 27.805 205 120 9 144 322 89 291 7.87e-13 68.2
Msa0533270 MtrunA17_Chr4g0008061 22.519 262 167 7 88 314 15 275 5.03e-12 65.5
Msa0533270 MtrunA17_Chr5g0423111 26.515 264 156 9 96 322 29 291 5.90e-12 65.9
Msa0533270 MtrunA17_Chr4g0004571 26.378 254 153 10 88 310 16 266 1.17e-11 64.7
Msa0533270 MtrunA17_Chr7g0241521 21.756 262 169 7 88 314 17 277 1.77e-11 63.9
Msa0533270 MtrunA17_Chr3g0086811 24.068 295 159 10 88 322 28 317 3.08e-11 63.5
Msa0533270 MtrunA17_Chr8g0343381 28.090 178 101 4 167 322 35 207 6.87e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533270 AT3G51870.1 63.401 347 101 3 1 322 1 346 1.81e-146 417
Msa0533270 AT5G01500.1 71.525 295 63 1 49 322 80 374 6.59e-138 397
Msa0533270 AT4G32400.1 33.984 256 146 7 88 320 114 369 3.92e-38 140
Msa0533270 AT4G32400.1 30.189 159 107 1 166 320 113 271 3.34e-17 82.0
Msa0533270 AT4G32400.1 28.641 206 116 6 71 251 192 391 5.44e-14 72.4
Msa0533270 AT4G01100.1 30.556 288 146 8 88 321 42 329 2.38e-35 131
Msa0533270 AT4G01100.1 29.557 203 101 8 90 250 147 349 3.00e-13 70.1
Msa0533270 AT2G37890.1 31.502 273 148 7 88 321 45 317 7.52e-34 127
Msa0533270 AT3G55640.1 32.509 283 142 9 83 321 33 310 1.01e-33 127
Msa0533270 AT3G55640.4 32.509 283 142 9 83 321 33 310 1.01e-33 127
Msa0533270 AT5G61810.2 32.046 259 149 6 87 322 64 318 2.19e-33 126
Msa0533270 AT5G61810.2 28.249 177 108 2 88 245 156 332 1.37e-14 73.9
Msa0533270 AT1G14560.1 32.472 271 132 6 99 321 38 305 2.34e-33 125
Msa0533270 AT4G01100.2 29.139 302 146 8 88 321 42 343 3.66e-33 126
Msa0533270 AT4G01100.2 29.557 203 101 8 90 250 161 363 4.10e-13 69.7
Msa0533270 AT1G14560.2 32.584 267 129 6 99 317 38 301 8.86e-33 124
Msa0533270 AT3G53940.1 31.752 274 146 9 88 321 73 345 1.67e-32 124
Msa0533270 AT4G26180.1 31.469 286 156 5 76 321 9 294 1.80e-32 123
Msa0533270 AT5G61810.1 31.801 261 151 6 85 322 205 461 2.44e-32 125
Msa0533270 AT5G61810.1 28.249 177 108 2 88 245 299 475 2.78e-14 73.9
Msa0533270 AT4G01100.3 29.856 278 141 8 98 321 2 279 3.83e-32 122
Msa0533270 AT4G01100.3 29.557 203 101 8 90 250 97 299 1.75e-13 70.5
Msa0533270 AT4G26180.2 31.560 282 153 5 76 317 9 290 1.09e-31 120
Msa0533270 AT3G20240.1 30.282 284 149 7 83 322 47 325 9.39e-29 114
Msa0533270 AT5G51050.1 32.353 272 140 11 83 320 218 479 4.44e-28 114
Msa0533270 AT5G51050.1 29.213 178 106 4 88 245 318 495 2.13e-14 74.3
Msa0533270 AT5G07320.1 32.258 248 137 9 98 320 219 460 5.24e-28 113
Msa0533270 AT5G07320.1 26.966 178 109 3 88 245 300 476 4.09e-14 73.2
Msa0533270 AT5G48970.1 26.780 295 152 9 90 320 24 318 4.43e-25 103
Msa0533270 AT5G48970.1 30.899 178 98 5 168 320 23 200 1.47e-15 76.6
Msa0533270 AT3G21390.1 29.153 295 144 10 90 320 21 314 7.23e-24 100
Msa0533270 AT3G21390.1 28.272 191 107 5 160 320 5 195 3.40e-14 72.8
Msa0533270 AT3G21390.2 29.153 295 144 10 90 320 43 336 1.06e-23 100
Msa0533270 AT3G21390.2 28.272 191 107 5 160 320 27 217 4.90e-14 72.4
Msa0533270 AT1G14560.3 31.220 205 111 3 147 321 3 207 2.07e-23 97.1
Msa0533270 AT3G55640.2 32.461 191 98 5 83 242 33 223 9.57e-23 95.5
Msa0533270 AT3G55640.3 32.461 191 98 5 83 242 33 223 9.57e-23 95.5
Msa0533270 AT3G53940.2 32.086 187 94 6 88 242 73 258 1.81e-22 95.5
Msa0533270 AT1G34065.1 27.922 308 193 10 25 316 21 315 1.47e-21 94.0
Msa0533270 AT1G34065.1 27.751 209 122 7 63 251 142 341 1.79e-12 67.8
Msa0533270 AT5G56450.1 26.230 305 177 8 60 318 6 308 4.28e-21 92.4
Msa0533270 AT5G48970.2 27.803 223 126 7 133 320 25 247 1.03e-20 90.5
Msa0533270 AT5G48970.2 31.783 129 80 3 200 320 1 129 9.66e-12 64.7
Msa0533270 AT2G30160.1 27.946 297 178 8 59 320 10 305 1.05e-20 91.3
Msa0533270 AT5G64970.1 29.818 275 148 11 90 322 137 408 8.43e-20 89.7
Msa0533270 AT1G34065.2 30.380 237 154 7 88 316 75 308 1.00e-19 88.6
Msa0533270 AT1G34065.2 29.050 179 108 5 90 251 158 334 2.01e-12 67.4
Msa0533270 AT5G64970.2 28.881 277 150 12 89 322 12 284 8.90e-19 85.5
Msa0533270 AT5G13490.1 30.370 270 148 8 88 317 88 357 1.09e-18 86.3
Msa0533270 AT5G13490.2 30.370 270 148 8 88 317 88 357 1.09e-18 86.3
Msa0533270 AT5G64970.3 29.630 270 145 11 90 317 137 403 1.67e-18 85.9
Msa0533270 AT4G39460.2 29.289 239 154 9 88 316 58 291 4.66e-18 84.0
Msa0533270 AT4G39460.2 29.665 209 112 7 63 248 118 314 4.27e-12 66.6
Msa0533270 AT4G39460.1 29.289 239 154 9 88 316 58 291 4.66e-18 84.0
Msa0533270 AT4G39460.1 29.665 209 112 7 63 248 118 314 4.27e-12 66.6
Msa0533270 AT4G39460.3 29.289 239 154 9 88 316 58 291 4.66e-18 84.0
Msa0533270 AT4G39460.3 29.665 209 112 7 63 248 118 314 4.27e-12 66.6
Msa0533270 AT1G78180.1 31.022 274 146 10 90 322 130 401 1.89e-17 82.8
Msa0533270 AT1G78180.1 30.921 152 101 2 167 314 128 279 2.93e-11 64.3
Msa0533270 AT3G08580.2 28.146 302 171 8 62 317 52 353 2.23e-17 82.4
Msa0533270 AT3G08580.1 28.146 302 171 8 62 317 52 353 2.23e-17 82.4
Msa0533270 AT5G17400.1 28.522 291 149 12 75 316 1 281 2.96e-17 81.3
Msa0533270 AT1G07030.1 28.339 307 179 10 43 320 6 300 4.12e-17 81.3
Msa0533270 AT4G28390.1 30.112 269 149 8 88 317 83 351 6.42e-16 78.2
Msa0533270 AT4G28390.2 30.112 269 149 8 88 317 83 351 6.42e-16 78.2
Msa0533270 AT4G03115.1 25.758 264 171 9 71 310 21 283 1.04e-15 77.0
Msa0533270 AT4G03115.3 24.262 305 191 11 30 310 27 315 1.20e-15 77.0
Msa0533270 AT1G25380.1 26.570 207 134 5 133 322 87 292 1.38e-14 74.3
Msa0533270 AT1G25380.1 30.719 153 88 5 178 314 33 183 4.24e-12 66.6
Msa0533270 AT1G25380.2 26.570 207 134 5 133 322 87 292 1.38e-14 74.3
Msa0533270 AT1G25380.2 30.719 153 88 5 178 314 33 183 4.24e-12 66.6
Msa0533270 AT4G03115.5 26.776 183 126 4 135 310 31 212 1.63e-14 72.4
Msa0533270 AT4G03115.6 26.776 183 126 4 135 310 39 220 1.89e-14 72.4
Msa0533270 AT2G47490.1 28.244 262 149 9 96 320 25 284 2.67e-13 70.1
Msa0533270 AT4G11440.1 27.843 255 149 10 89 313 331 580 1.04e-12 69.3
Msa0533270 AT4G11440.1 26.994 163 103 6 169 322 332 487 2.83e-11 64.7
Msa0533270 AT4G11440.2 27.843 255 149 10 89 313 331 580 1.04e-12 69.3
Msa0533270 AT4G11440.2 26.994 163 103 6 169 322 332 487 2.83e-11 64.7
Msa0533270 AT5G66380.1 27.536 276 156 11 90 322 12 286 1.83e-12 67.4
Msa0533270 AT3G54110.1 22.989 261 167 8 88 314 15 275 1.63e-11 64.7
Msa0533270 AT4G03115.2 27.692 195 123 6 71 248 21 214 2.24e-11 63.2
Msa0533270 AT4G03115.4 27.692 195 123 6 71 248 21 214 2.36e-11 63.2
Msa0533270 AT1G79900.1 24.490 147 107 1 169 311 112 258 7.40e-11 62.4

Find 89 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGGAGACGGTGGCGAATT+TGG 0.210312 4_1:+8071579 None:intergenic
GTTAGAGGTGGTGGTTAAAT+TGG 0.220101 4_1:+8071678 None:intergenic
GTGGCACAAGATGGAGTTAT+TGG 0.246853 4_1:-8064292 Msa0533270:CDS
AAGGATAAGTTTGATGGTTT+TGG 0.254529 4_1:+8071741 None:intergenic
ACAGTATTAGATGCCATTTC+AGG 0.261132 4_1:-8064565 Msa0533270:intron
GGCCTTGGTCCTTCTCTTAT+CGG 0.280665 4_1:-8064873 Msa0533270:CDS
GAGAAACAATGCAGCATCTT+TGG 0.280947 4_1:+8071474 None:intergenic
GCATCTAATACTGTCTTATA+AGG 0.297227 4_1:+8064574 None:intergenic
CTTTGCTTATGAAATTTATA+AGG 0.302156 4_1:-8065445 Msa0533270:intron
AACGATGAGCTCTCTGTTGC+CGG 0.331703 4_1:-8065324 Msa0533270:CDS
TTAGAGGTGGTGGTTAAATT+GGG 0.348256 4_1:+8071679 None:intergenic
CAGACTCATGGAGTGAGAAT+TGG 0.350463 4_1:-8071296 Msa0533270:CDS
CAAAAGTTAACTGCAATATA+TGG 0.353568 4_1:+8064843 None:intergenic
TAAGAAGCTGAGCCGGCGTC+GGG 0.359061 4_1:+8071527 None:intergenic
GCTTCTTTCTACTACGGCCT+TGG 0.361517 4_1:-8064888 Msa0533270:CDS
TGTCATAAGGATAAGTTTGA+TGG 0.375557 4_1:+8071735 None:intergenic
GGCGAATTCGTTGTTCGGTT+TGG 0.378119 4_1:+8071549 None:intergenic
AAGAGCTGAACAGCACTATA+AGG 0.384778 4_1:+8065465 None:intergenic
GTCGGGGCGAATTCGTTGTT+CGG 0.386237 4_1:+8071544 None:intergenic
AGAAACAATGCAGCATCTTT+GGG 0.402197 4_1:+8071475 None:intergenic
GAAAGTGCTAAGAAGACAAT+TGG 0.415198 4_1:-8071269 Msa0533270:CDS
AGCACCTGCTGCAAGTCTTC+CGG 0.417383 4_1:+8065305 None:intergenic
CAATGCCAACTAACCTGAAA+TGG 0.419802 4_1:+8064552 None:intergenic
GGATGAAACGACGTCGTTAG+AGG 0.424764 4_1:+8071663 None:intergenic
TTCGTTCTACTGCGTGTGTT+TGG 0.426091 4_1:+8071771 None:intergenic
CGTAATCTCAGGACATCTAA+AGG 0.428560 4_1:+8065055 None:intergenic
CAAGAGCGACGACGGCGATC+GGG 0.448099 4_1:+8071500 None:intergenic
GATCACAAGTACCTGCTGTT+TGG 0.457445 4_1:+8064229 None:intergenic
AGCAGCTCCGGCTACAGCAC+CGG 0.464594 4_1:+8071450 None:intergenic
TTACGATTAGCTGTTGAACC+TGG 0.470496 4_1:-8065037 Msa0533270:CDS
TTTCTCGCCGGTGCTGTAGC+CGG 0.473413 4_1:-8071457 Msa0533270:CDS
ACAAGAGCGACGACGGCGAT+CGG 0.484450 4_1:+8071499 None:intergenic
GTAATCTCAGGACATCTAAA+GGG 0.501170 4_1:+8065056 None:intergenic
TTAAGAAGCTGAGCCGGCGT+CGG 0.508929 4_1:+8071526 None:intergenic
GAATTTACAGAAAATATTCA+AGG 0.511537 4_1:-8065352 Msa0533270:intron
TTTGGAAGGAATGGTGGTGG+TGG 0.522252 4_1:+8071597 None:intergenic
CGCCTTGAGCATGGTAAGAG+AGG 0.526243 4_1:-8064919 Msa0533270:CDS
AACGACGTCGTTAGAGGTGG+TGG 0.529351 4_1:+8071669 None:intergenic
TAGAGGTGGTGGTTAAATTG+GGG 0.531755 4_1:+8071680 None:intergenic
GAAGACAATTGGTTTCATTG+AGG 0.535119 4_1:-8071258 Msa0533270:intron
TCGAATCAAACTTCTCATGC+AGG 0.539543 4_1:-8071401 Msa0533270:intron
AGAAGTTTGATTCGATCAAG+TGG 0.545093 4_1:+8071409 None:intergenic
AAGCATTGGGCACAAATCCT+CGG 0.546969 4_1:+8064263 None:intergenic
TTTGGTTTGAGAGGCGGAGA+CGG 0.549019 4_1:+8071567 None:intergenic
GGTGTTGTTGAAGAGGTGGT+TGG 0.549588 4_1:+8071642 None:intergenic
ACAAGTACCTGCTGTTTGGT+AGG 0.550522 4_1:+8064233 None:intergenic
TCGATCAAGTGGAGCAGTGA+CGG 0.556672 4_1:+8071420 None:intergenic
CACACTTACATGCTATCCTC+TGG 0.561081 4_1:-8064632 Msa0533270:CDS
CAACAGCTAATCGTAATCTC+AGG 0.561207 4_1:+8065044 None:intergenic
TTTATAGGTCGCCTTGAGCA+TGG 0.566530 4_1:-8064928 Msa0533270:intron
CAACGAATTCGCCCCGACGC+CGG 0.566929 4_1:-8071539 Msa0533270:CDS
GATGTTACGCCACGTGGCGA+CGG 0.567513 4_1:+8071702 None:intergenic
TTGAGCATGGTAAGAGAGGA+AGG 0.567910 4_1:-8064915 Msa0533270:CDS
AATTTACAGAAAATATTCAA+GGG 0.571080 4_1:-8065351 Msa0533270:intron
GGTGGCGAATTTGGAAGGAA+TGG 0.574574 4_1:+8071588 None:intergenic
GGCAAGAGATGCTGAAAGCA+CGG 0.575833 4_1:+8064654 None:intergenic
AATGGTGGTGGTGGTTGCGT+CGG 0.578955 4_1:+8071606 None:intergenic
TACGATTAGCTGTTGAACCT+GGG 0.579092 4_1:-8065036 Msa0533270:CDS
GAGACGGTGGCGAATTTGGA+AGG 0.582054 4_1:+8071583 None:intergenic
GGAGTTATTGGCTTGTACCG+AGG 0.582134 4_1:-8064280 Msa0533270:CDS
GAGCGACGACGGCGATCGGG+TGG 0.583645 4_1:+8071503 None:intergenic
ATTGGGGATGTTACGCCACG+TGG 0.585033 4_1:+8071696 None:intergenic
GTTGCCGGAAGACTTGCAGC+AGG 0.586133 4_1:-8065309 Msa0533270:CDS
GTTGTTCGGTTTGGTTTGAG+AGG 0.586411 4_1:+8071558 None:intergenic
GATGCTGCATTGTTTCTCGC+CGG 0.586437 4_1:-8071469 Msa0533270:CDS
GCAGGTATTGTGGCACAAGA+TGG 0.586976 4_1:-8064301 Msa0533270:intron
GGGTGGTTAAGAAGCTGAGC+CGG 0.587213 4_1:+8071520 None:intergenic
TTTGATTGATGCAGGTATTG+TGG 0.587827 4_1:-8064311 Msa0533270:intron
AGATGGTGTTGTTGAAGAGG+TGG 0.589863 4_1:+8071638 None:intergenic
TCTGTCATTGTTCGACACCC+AGG 0.599777 4_1:+8065019 None:intergenic
TGAAGATGGTGTTGTTGAAG+AGG 0.600027 4_1:+8071635 None:intergenic
TCGAAGACAGATGCAACTGA+AGG 0.601278 4_1:-8064602 Msa0533270:CDS
TTCCTCTCTTACCATGCTCA+AGG 0.602242 4_1:+8064917 None:intergenic
TGCGTCGGTGAAAGTGAAGA+TGG 0.606429 4_1:+8071621 None:intergenic
GTTCGGTTTGGTTTGAGAGG+CGG 0.607157 4_1:+8071561 None:intergenic
GGAGCTATTCCGATAAGAGA+AGG 0.610783 4_1:+8064864 None:intergenic
GGCGAATTTGGAAGGAATGG+TGG 0.612416 4_1:+8071591 None:intergenic
GGTTTGAGAGGCGGAGACGG+TGG 0.619764 4_1:+8071570 None:intergenic
TGAAACGACGTCGTTAGAGG+TGG 0.620504 4_1:+8071666 None:intergenic
GAATTTGGAAGGAATGGTGG+TGG 0.624286 4_1:+8071594 None:intergenic
CGAAGACAGATGCAACTGAA+GGG 0.629981 4_1:-8064601 Msa0533270:CDS
TTTGGGAACAAGAGCGACGA+CGG 0.632313 4_1:+8071492 None:intergenic
CAGAGGATAGCATGTAAGTG+TGG 0.643661 4_1:+8064633 None:intergenic
CGAACAAAACCGTCGCCACG+TGG 0.655549 4_1:-8071711 Msa0533270:CDS
TTCCGATAAGAGAAGGACCA+AGG 0.667681 4_1:+8064871 None:intergenic
AAGAAGCTGAGCCGGCGTCG+GGG 0.667870 4_1:+8071528 None:intergenic
TGTCTTCGAACTGTGTCCAG+AGG 0.670978 4_1:+8064616 None:intergenic
TGGGTGTCGAACAATGACAG+AGG 0.760125 4_1:-8065017 Msa0533270:intron
AAGAGATGCTGAAAGCACGG+CGG 0.775581 4_1:+8064657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAATATA+AGG - chr4_1:8066118-8066137 Msa0533270:intron 0.0%
!! AAAAATAAAAATAATAAAAT+TGG + chr4_1:8067219-8067238 None:intergenic 0.0%
!! TAATAAAATTGGAATAAAAT+TGG + chr4_1:8067208-8067227 None:intergenic 10.0%
!!! ATTTTTAGGAATTTTTTAAA+GGG + chr4_1:8068960-8068979 None:intergenic 10.0%
!!! AATTTTTAGGAATTTTTTAA+AGG + chr4_1:8068961-8068980 None:intergenic 10.0%
!!! TAATTTTCATATGTTAAAAT+TGG - chr4_1:8069018-8069037 Msa0533270:intron 10.0%
!! ACTTAATATTATGAGTTTAA+TGG - chr4_1:8065105-8065124 Msa0533270:intron 15.0%
!!! AATAAATTGATTTTTGAGTA+GGG + chr4_1:8065748-8065767 None:intergenic 15.0%
!!! GGATTTTATATATTTTTTGT+TGG - chr4_1:8066396-8066415 Msa0533270:intron 15.0%
!! AACATTACCTATAAATTTAT+TGG - chr4_1:8066511-8066530 Msa0533270:intron 15.0%
!!! AAAGATTGATTAGTATTTTT+AGG + chr4_1:8066643-8066662 None:intergenic 15.0%
!!! TTCAAATGCAATTTTAAAAA+TGG + chr4_1:8066871-8066890 None:intergenic 15.0%
!! ATTAATTCTATCAAAAAACA+AGG + chr4_1:8068910-8068929 None:intergenic 15.0%
!! AGAAAAATAGAAATGAATAT+GGG + chr4_1:8069541-8069560 None:intergenic 15.0%
!! AAGAAAAATAGAAATGAATA+TGG + chr4_1:8069542-8069561 None:intergenic 15.0%
!! AAGAAATTAAAATGCATAAA+AGG + chr4_1:8069624-8069643 None:intergenic 15.0%
!!! TTTTATGCATTTTAATTTCT+TGG - chr4_1:8069623-8069642 Msa0533270:intron 15.0%
!! TTTGATTAAGAAAACAAAAA+AGG + chr4_1:8069908-8069927 None:intergenic 15.0%
!!! TTGATTTTAAGTTTGAAAAT+TGG + chr4_1:8070036-8070055 None:intergenic 15.0%
!!! AAAAATGTTTTTGTTTTTGT+TGG + chr4_1:8070059-8070078 None:intergenic 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG + chr4_1:8070142-8070161 None:intergenic 15.0%
!! AAATGTTTATTAAACCTAAA+AGG + chr4_1:8070206-8070225 None:intergenic 15.0%
!! AATTTACAGAAAATATTCAA+GGG - chr4_1:8070674-8070693 Msa0533270:intron 15.0%
!! ATATGATATCATGTCAATTA+AGG + chr4_1:8065034-8065053 None:intergenic 20.0%
!! TAAATGAAATGTCAACTTAT+CGG + chr4_1:8065174-8065193 None:intergenic 20.0%
!!! TAAGTTGACATTTCATTTAA+TGG - chr4_1:8065175-8065194 Msa0533270:intron 20.0%
!!! TAATGATTATTTTACACTGT+CGG - chr4_1:8065205-8065224 Msa0533270:intron 20.0%
!!! TAAAAAGAACATTTTCATCA+TGG - chr4_1:8065499-8065518 Msa0533270:intron 20.0%
!!! AAAAAGAACATTTTCATCAT+GGG - chr4_1:8065500-8065519 Msa0533270:intron 20.0%
!!! CAATAAATTGATTTTTGAGT+AGG + chr4_1:8065749-8065768 None:intergenic 20.0%
!!! AATTGTTTTAGTTCTGTAAT+TGG - chr4_1:8066288-8066307 Msa0533270:intron 20.0%
!! ATATATAAAATCCTTGATCA+GGG + chr4_1:8066389-8066408 None:intergenic 20.0%
!! AATATATAAAATCCTTGATC+AGG + chr4_1:8066390-8066409 None:intergenic 20.0%
!!! TAATTTTTAGCGATATTAGA+TGG - chr4_1:8066462-8066481 Msa0533270:intron 20.0%
!!! TATTTTTAGGTCCAAAATTA+AGG + chr4_1:8066630-8066649 None:intergenic 20.0%
!! ATTTGCAAAATTTACATGTA+AGG - chr4_1:8066736-8066755 Msa0533270:intron 20.0%
!! TTTGCAAAATTTACATGTAA+GGG - chr4_1:8066737-8066756 Msa0533270:intron 20.0%
!! TTGGAATAAAATTGGTAAAT+TGG + chr4_1:8067200-8067219 None:intergenic 20.0%
!!! ATGCAATTTCTAAAAGTTTT+AGG + chr4_1:8067255-8067274 None:intergenic 20.0%
!! ACAAATAAAAAAATGACATG+TGG + chr4_1:8067368-8067387 None:intergenic 20.0%
!!! ATGAATTTTTGATAGAGAAT+TGG + chr4_1:8067610-8067629 None:intergenic 20.0%
!! AGATTTGAAAAAAGATCAAA+AGG - chr4_1:8068086-8068105 Msa0533270:intron 20.0%
!!! GAATTTTTTGTGAACAAATT+TGG + chr4_1:8068794-8068813 None:intergenic 20.0%
!!! AGAAATCTACATGAATTTTT+AGG + chr4_1:8068974-8068993 None:intergenic 20.0%
!! AAAAATTCATGTAGATTTCT+TGG - chr4_1:8068974-8068993 Msa0533270:intron 20.0%
!! CTAAAATTTAACAAGCAATT+TGG + chr4_1:8069125-8069144 None:intergenic 20.0%
!!! CTAAACCTTTAAAATGTAAT+TGG - chr4_1:8069335-8069354 Msa0533270:intron 20.0%
!!! ACATTCCAATTACATTTTAA+AGG + chr4_1:8069343-8069362 None:intergenic 20.0%
!! GAGAAATATTAGAATGTAAA+AGG + chr4_1:8069435-8069454 None:intergenic 20.0%
!! ACAAAAAAGGAAAATACAAT+GGG + chr4_1:8069895-8069914 None:intergenic 20.0%
!! AACAAAAAAGGAAAATACAA+TGG + chr4_1:8069896-8069915 None:intergenic 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG + chr4_1:8070378-8070397 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG - chr4_1:8070378-8070397 Msa0533270:intron 20.0%
!! CTTTGCTTATGAAATTTATA+AGG - chr4_1:8070580-8070599 Msa0533270:intron 20.0%
!! GAATTTACAGAAAATATTCA+AGG - chr4_1:8070673-8070692 Msa0533270:intron 20.0%
!! AAATATTTGTAAACCATACA+AGG + chr4_1:8070798-8070817 None:intergenic 20.0%
!! CACTTTACAAAAAAAATTAC+TGG + chr4_1:8070879-8070898 None:intergenic 20.0%
!!! TACTCTAAAATCTCTCAAAA+CGG + chr4_1:8064672-8064691 None:intergenic 25.0%
! GTTACACATACATATAATTG+AGG - chr4_1:8064960-8064979 Msa0533270:intron 25.0%
! TTGACATGATATCATATCAT+TGG - chr4_1:8065037-8065056 Msa0533270:CDS 25.0%
!! GGAATTTGTTTATACCATTT+CGG - chr4_1:8065332-8065351 Msa0533270:CDS 25.0%
!!! GTGTTCTAAAATGAATGTAA+TGG + chr4_1:8065410-8065429 None:intergenic 25.0%
! AATTGAAGACTTCATTTGAT+CGG + chr4_1:8065602-8065621 None:intergenic 25.0%
!! CTCTTTCTTTTCTATTACTT+AGG + chr4_1:8065671-8065690 None:intergenic 25.0%
!!! ACATCTATTTTTATCTCAAC+CGG - chr4_1:8065805-8065824 Msa0533270:intron 25.0%
!! ATTCTAAAAGACACAATCAT+TGG + chr4_1:8065907-8065926 None:intergenic 25.0%
! GAAAACTACATGAAAATTGA+TGG + chr4_1:8066346-8066365 None:intergenic 25.0%
! TATATAAAATCCTTGATCAG+GGG + chr4_1:8066388-8066407 None:intergenic 25.0%
! GTACTAAATGTGTAAGTTAA+TGG - chr4_1:8066418-8066437 Msa0533270:intron 25.0%
! AAATTATTGTCAAGGAGTTT+GGG + chr4_1:8066448-8066467 None:intergenic 25.0%
! AAAATTATTGTCAAGGAGTT+TGG + chr4_1:8066449-8066468 None:intergenic 25.0%
! ATCGCTAAAAATTATTGTCA+AGG + chr4_1:8066456-8066475 None:intergenic 25.0%
! GTAAGCTCCAATAAATTTAT+AGG + chr4_1:8066521-8066540 None:intergenic 25.0%
! CAAAATTAAGGTATAACATG+TGG + chr4_1:8066618-8066637 None:intergenic 25.0%
!! CACATGTTATACCTTAATTT+TGG - chr4_1:8066616-8066635 Msa0533270:intron 25.0%
!!! CTTAAAATGGATTTTCAACA+GGG + chr4_1:8067019-8067038 None:intergenic 25.0%
!!! ACTTAAAATGGATTTTCAAC+AGG + chr4_1:8067020-8067039 None:intergenic 25.0%
!!! TACTTTAAAGTACCTCATTT+AGG - chr4_1:8067116-8067135 Msa0533270:intron 25.0%
!! AACGTCTAAAATTGACAAAA+CGG + chr4_1:8067160-8067179 None:intergenic 25.0%
! AATTGGAAAATAACGTAAAG+TGG + chr4_1:8067183-8067202 None:intergenic 25.0%
! ATAACTTTGTAACAAACTCT+TGG + chr4_1:8067344-8067363 None:intergenic 25.0%
! AAGTTCCAGAATATCAAAAA+AGG - chr4_1:8067654-8067673 Msa0533270:intron 25.0%
!!! TTTTGCCTTTTTTGATATTC+TGG + chr4_1:8067662-8067681 None:intergenic 25.0%
!!! TTCAATGATGATGATTTTTC+TGG + chr4_1:8067740-8067759 None:intergenic 25.0%
! AACTCGTTTGTGAAAATAAA+CGG + chr4_1:8068154-8068173 None:intergenic 25.0%
!!! ATGCTTCAATTATTTTTCAC+AGG + chr4_1:8068882-8068901 None:intergenic 25.0%
!!! GGAATTTTTTAAAGGGTTTT+TGG + chr4_1:8068953-8068972 None:intergenic 25.0%
!! TGCTATTCTTGTCATATTTT+AGG - chr4_1:8069067-8069086 Msa0533270:intron 25.0%
! TAAAACCTTATGAAATCAAG+TGG + chr4_1:8069157-8069176 None:intergenic 25.0%
! TGTTGTATAATTGTGAACTT+TGG - chr4_1:8069198-8069217 Msa0533270:intron 25.0%
!!! TTAGAAACAAGTTTTGGAAT+GGG + chr4_1:8069319-8069338 None:intergenic 25.0%
!!! TTTAGAAACAAGTTTTGGAA+TGG + chr4_1:8069320-8069339 None:intergenic 25.0%
!! AAAGGTTTAGAAACAAGTTT+TGG + chr4_1:8069325-8069344 None:intergenic 25.0%
! AATTGGAATGTGAGAATTAT+AGG - chr4_1:8069352-8069371 Msa0533270:intron 25.0%
! ATATGAAACATGAAATGAAG+AGG + chr4_1:8069494-8069513 None:intergenic 25.0%
!!! TTGCAATTTAATTTGTACCA+AGG - chr4_1:8069560-8069579 Msa0533270:intron 25.0%
!!! ATTTTAATTTCTTGGCAAAG+AGG - chr4_1:8069631-8069650 Msa0533270:intron 25.0%
!! TTTTTCTAAGTATAAGTCCT+AGG + chr4_1:8069803-8069822 None:intergenic 25.0%
!! AATCTTTTCCAAATAAACCT+TGG - chr4_1:8069859-8069878 Msa0533270:intron 25.0%
!! ATCTTTTCCAAATAAACCTT+GGG - chr4_1:8069860-8069879 Msa0533270:intron 25.0%
!! GATTAGTCATTTGCAAAATA+TGG + chr4_1:8069957-8069976 None:intergenic 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG + chr4_1:8070373-8070392 None:intergenic 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG + chr4_1:8070374-8070393 None:intergenic 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG + chr4_1:8070379-8070398 None:intergenic 25.0%
! AAAGACTACTCAACATTATA+AGG + chr4_1:8070498-8070517 None:intergenic 25.0%
!!! TTGTTTTAGTGTTTCTTTTC+AGG - chr4_1:8070523-8070542 Msa0533270:intron 25.0%
! AATTCTTGAAAGATAGTTAG+CGG + chr4_1:8070610-8070629 None:intergenic 25.0%
! AGTAAGATAAATTGACATCA+AGG + chr4_1:8070923-8070942 None:intergenic 25.0%
! ATTAAAACGGGAAAGATATA+AGG + chr4_1:8071061-8071080 None:intergenic 25.0%
! ACAATTCTGTTCATTAAAAC+GGG + chr4_1:8071073-8071092 None:intergenic 25.0%
! CACAATTCTGTTCATTAAAA+CGG + chr4_1:8071074-8071093 None:intergenic 25.0%
! CAAAAGTTAACTGCAATATA+TGG + chr4_1:8071185-8071204 None:intergenic 25.0%
!!! CTTTATCTTTTTAAGTGCAT+TGG - chr4_1:8071236-8071255 Msa0533270:intron 25.0%
! TTATTGCTATAACAGCTAAA+AGG + chr4_1:8071603-8071622 None:intergenic 25.0%
! ATTAATACTTTGATTGATGC+AGG - chr4_1:8071706-8071725 Msa0533270:CDS 25.0%
!! AAGGATAAGTTTGATGGTTT+TGG + chr4_1:8064287-8064306 None:intergenic 30.0%
TGTCATAAGGATAAGTTTGA+TGG + chr4_1:8064293-8064312 None:intergenic 30.0%
!! ATGTTTCTGAAATGACATTG+TGG - chr4_1:8064698-8064717 Msa0533270:CDS 30.0%
AGTTTATTGATATACACCGT+CGG - chr4_1:8064804-8064823 Msa0533270:intron 30.0%
TTCAACCACATTAAATGATG+TGG + chr4_1:8064991-8065010 None:intergenic 30.0%
GTTTAATGGAAGTAAACTGA+CGG - chr4_1:8065119-8065138 Msa0533270:intron 30.0%
!! TATCGGTTTACTTCAATATG+TGG + chr4_1:8065157-8065176 None:intergenic 30.0%
! TCAAGTAACGCATTTTGAAT+AGG + chr4_1:8065363-8065382 None:intergenic 30.0%
GGTTGAGATAAAAATAGATG+TGG + chr4_1:8065806-8065825 None:intergenic 30.0%
GGAGTTACAATAATACACAA+GGG + chr4_1:8065832-8065851 None:intergenic 30.0%
TGGAGTTACAATAATACACA+AGG + chr4_1:8065833-8065852 None:intergenic 30.0%
TGTACACTAGACAGTTAAAT+TGG + chr4_1:8065853-8065872 None:intergenic 30.0%
CTAAAACAATTACTAACCAG+AGG + chr4_1:8066279-8066298 None:intergenic 30.0%
AATTATTGTCAAGGAGTTTG+GGG + chr4_1:8066447-8066466 None:intergenic 30.0%
! TAGCGATATTAGATGGTTTT+TGG - chr4_1:8066469-8066488 Msa0533270:intron 30.0%
ATTAAGGTATAACATGTGGT+AGG + chr4_1:8066614-8066633 None:intergenic 30.0%
AATGACTTGAAATGCAAGAA+AGG + chr4_1:8066666-8066685 None:intergenic 30.0%
TTATTCACACACTACTTGAA+AGG + chr4_1:8066822-8066841 None:intergenic 30.0%
ACTCAGATGCAAACTTAAAA+TGG + chr4_1:8067032-8067051 None:intergenic 30.0%
AGAGAATTGGTATGAATTTG+AGG + chr4_1:8067597-8067616 None:intergenic 30.0%
!! GATATTCTGGAACTTTGAAT+TGG + chr4_1:8067649-8067668 None:intergenic 30.0%
!!! ATATTTACCTGGTTTTGGAT+GGG + chr4_1:8067960-8067979 None:intergenic 30.0%
!!! TATATTTACCTGGTTTTGGA+TGG + chr4_1:8067961-8067980 None:intergenic 30.0%
! TTCGTATATTTACCTGGTTT+TGG + chr4_1:8067965-8067984 None:intergenic 30.0%
TGTGTTAAATTCATCATCGA+AGG - chr4_1:8067998-8068017 Msa0533270:intron 30.0%
!! CTTTGTTTCACCGTTTATTT+TGG + chr4_1:8068032-8068051 None:intergenic 30.0%
AAATAAACGGTGAAACAAAG+TGG - chr4_1:8068032-8068051 Msa0533270:intron 30.0%
! TCTTTCGAACAAACAAGTTT+TGG + chr4_1:8068069-8068088 None:intergenic 30.0%
TCTGTCTTCTACATTAAATC+AGG + chr4_1:8068182-8068201 None:intergenic 30.0%
! CTCGTTTCAAGAAATTCTTT+TGG - chr4_1:8068213-8068232 Msa0533270:intron 30.0%
!! AGTTTCCTCTTTAAGATTCT+GGG + chr4_1:8068317-8068336 None:intergenic 30.0%
!!! TTCGTTTGGTTTTACATCTT+AGG - chr4_1:8068570-8068589 Msa0533270:intron 30.0%
! TTTTGTGAACAAATTTGGAC+AGG + chr4_1:8068789-8068808 None:intergenic 30.0%
!! GGTATTTTTGTAGCATTTTG+TGG - chr4_1:8068995-8069014 Msa0533270:intron 30.0%
!!! AAGTTTTGGAATGGGAATTA+AGG + chr4_1:8069311-8069330 None:intergenic 30.0%
GTAGAAAATAAGTGCAAACA+TGG + chr4_1:8069413-8069432 None:intergenic 30.0%
GAAATGAATATGGGATGAAA+TGG + chr4_1:8069532-8069551 None:intergenic 30.0%
AAGTGTTTACATTCTAACCT+TGG + chr4_1:8069580-8069599 None:intergenic 30.0%
AGGTTAGAATGTAAACACTT+AGG - chr4_1:8069580-8069599 Msa0533270:intron 30.0%
CATATCCTAGATACATTCTA+TGG + chr4_1:8069657-8069676 None:intergenic 30.0%
! GTATCTAGGATATGATGTAA+AGG - chr4_1:8069663-8069682 Msa0533270:intron 30.0%
GCATGTTTAGATGTATGTTT+AGG - chr4_1:8069757-8069776 Msa0533270:intron 30.0%
TGAAGTTGTTCACATTTGTT+TGG + chr4_1:8069835-8069854 None:intergenic 30.0%
AGGAAAATACAATGGGATAT+TGG + chr4_1:8069888-8069907 None:intergenic 30.0%
TGCAAAATATGGTCTAAACA+TGG + chr4_1:8069946-8069965 None:intergenic 30.0%
CATGAGATTGTAAAAAAGTG+GGG + chr4_1:8069983-8070002 None:intergenic 30.0%
GCATGAGATTGTAAAAAAGT+GGG + chr4_1:8069984-8070003 None:intergenic 30.0%
!! ACATTTTTGAGAGAGAACTA+CGG - chr4_1:8070071-8070090 Msa0533270:intron 30.0%
ATTCTAAGTGAAGAATTGGA+GGG + chr4_1:8070183-8070202 None:intergenic 30.0%
AAGGATTCTAAGTGAAGAAT+TGG + chr4_1:8070187-8070206 None:intergenic 30.0%
! TCTTCACTTAGAATCCTTTT+AGG - chr4_1:8070189-8070208 Msa0533270:intron 30.0%
AAATTAAAGACGGTTCCTAT+AGG - chr4_1:8070260-8070279 Msa0533270:intron 30.0%
TAACGACTATAGTAACCTAT+AGG + chr4_1:8070278-8070297 None:intergenic 30.0%
ATAGGTTACTATAGTCGTTA+TGG - chr4_1:8070278-8070297 Msa0533270:intron 30.0%
TAGGTTACTATAGTCGTTAT+GGG - chr4_1:8070279-8070298 Msa0533270:intron 30.0%
!! TAAGATATCACCGGTTTAAA+AGG - chr4_1:8070387-8070406 Msa0533270:intron 30.0%
! TACGTTTGAACCTTTTAAAC+CGG + chr4_1:8070400-8070419 None:intergenic 30.0%
!! TGGTGTTTTATCTTGGTTTT+CGG + chr4_1:8070438-8070457 None:intergenic 30.0%
!!! TGTTTCTTTTCAGGTGATTA+GGG - chr4_1:8070532-8070551 Msa0533270:intron 30.0%
TTTGTAAACCATACAAGGAT+AGG + chr4_1:8070793-8070812 None:intergenic 30.0%
!! CGTTTTAATGAACAGAATTG+TGG - chr4_1:8071072-8071091 Msa0533270:intron 30.0%
! AACAGAATTGTGGCTTTTAT+AGG - chr4_1:8071082-8071101 Msa0533270:intron 30.0%
!!! TTTTTAAGTGCATTGGTGTT+TGG - chr4_1:8071243-8071262 Msa0533270:intron 30.0%
TTTAGTCTATTACCCATAGA+AGG + chr4_1:8071298-8071317 None:intergenic 30.0%
! GTTCTCTTTTGATATTTCTC+TGG + chr4_1:8071331-8071350 None:intergenic 30.0%
GCATCTAATACTGTCTTATA+AGG + chr4_1:8071454-8071473 None:intergenic 30.0%
GCACAGAAAATGATTCTAAA+AGG + chr4_1:8071509-8071528 None:intergenic 30.0%
TATATGTAAGCACACATTGA+TGG - chr4_1:8071637-8071656 Msa0533270:CDS 30.0%
!!! GGTAGGTTTTTTAAAGCATT+GGG + chr4_1:8071778-8071797 None:intergenic 30.0%
!!! TGGTAGGTTTTTTAAAGCAT+TGG + chr4_1:8071779-8071798 None:intergenic 30.0%
! TTAGAGGTGGTGGTTAAATT+GGG + chr4_1:8064349-8064368 None:intergenic 35.0%
AGAAACAATGCAGCATCTTT+GGG + chr4_1:8064553-8064572 None:intergenic 35.0%
! AGAAGTTTGATTCGATCAAG+TGG + chr4_1:8064619-8064638 None:intergenic 35.0%
!! GAAAGTGCTAAGAAGACAAT+TGG - chr4_1:8064756-8064775 Msa0533270:intron 35.0%
! GAAGACAATTGGTTTCATTG+AGG - chr4_1:8064767-8064786 Msa0533270:intron 35.0%
TGATGCCACATCATTTAATG+TGG - chr4_1:8064983-8065002 Msa0533270:intron 35.0%
!! GTTTCTCGTTGGTAGTTAAT+TGG - chr4_1:8065305-8065324 Msa0533270:CDS 35.0%
TTGAATAGGAAACACCGAAA+TGG + chr4_1:8065349-8065368 None:intergenic 35.0%
TGGTTACATGATGTCAAAGA+TGG + chr4_1:8065543-8065562 None:intergenic 35.0%
!! AAAATAGATGTGGCTCTAGA+AGG + chr4_1:8065796-8065815 None:intergenic 35.0%
TACAATAATACACAAGGGTC+CGG + chr4_1:8065827-8065846 None:intergenic 35.0%
AGACACAATCATTGGATGTT+AGG + chr4_1:8065899-8065918 None:intergenic 35.0%
TTGAGTCAGCTATTATCTGA+TGG - chr4_1:8065956-8065975 Msa0533270:intron 35.0%
!! GCAAGTTGATGAGATCAAAA+TGG + chr4_1:8065998-8066017 None:intergenic 35.0%
TTATCCAGTTTGCAGTCTAA+AGG - chr4_1:8066311-8066330 Msa0533270:intron 35.0%
TATCCAGTTTGCAGTCTAAA+GGG - chr4_1:8066312-8066331 Msa0533270:intron 35.0%
TTCCTTCCCTATCATTGATA+TGG + chr4_1:8066562-8066581 None:intergenic 35.0%
!! TTTTGGTCATTTCAAGTGTC+AGG - chr4_1:8066924-8066943 Msa0533270:intron 35.0%
AGACTCAGAGACAAATTTCA+GGG + chr4_1:8066962-8066981 None:intergenic 35.0%
AAGACTCAGAGACAAATTTC+AGG + chr4_1:8066963-8066982 None:intergenic 35.0%
GGTCATTTCACACGAAATTT+CGG - chr4_1:8067085-8067104 Msa0533270:intron 35.0%
! CTAATGACTTGGACAGAAAA+TGG + chr4_1:8067284-8067303 None:intergenic 35.0%
! CATTTTCTGTCCAAGTCATT+AGG - chr4_1:8067282-8067301 Msa0533270:intron 35.0%
ATGATGTGTAATCTGGTGAA+TGG + chr4_1:8067448-8067467 None:intergenic 35.0%
!! GTTGTTGATGATGTGTAATC+TGG + chr4_1:8067455-8067474 None:intergenic 35.0%
!!! GTGGTGGTTTTAGTTTGTTA+CGG + chr4_1:8067547-8067566 None:intergenic 35.0%
TATGAATTTGAGGATTCTGG+TGG + chr4_1:8067587-8067606 None:intergenic 35.0%
TGGTATGAATTTGAGGATTC+TGG + chr4_1:8067590-8067609 None:intergenic 35.0%
AATTCTTGCTTGAATTGCGA+AGG + chr4_1:8067769-8067788 None:intergenic 35.0%
GAAGGATTCGTATATTTACC+TGG + chr4_1:8067971-8067990 None:intergenic 35.0%
AATTTAACACAGAGGTGAGA+AGG + chr4_1:8067989-8068008 None:intergenic 35.0%
CGATGATGAATTTAACACAG+AGG + chr4_1:8067997-8068016 None:intergenic 35.0%
GGTTCACGTTCCAAAATAAA+CGG - chr4_1:8068019-8068038 Msa0533270:intron 35.0%
TCGTTTGTGAAAATAAACGG+TGG + chr4_1:8068151-8068170 None:intergenic 35.0%
TGTAGAAGACAGAGTAGTTT+AGG - chr4_1:8068189-8068208 Msa0533270:intron 35.0%
!! GAGTTTCCTCTTTAAGATTC+TGG + chr4_1:8068318-8068337 None:intergenic 35.0%
GAATCTTAAAGAGGAAACTC+AGG - chr4_1:8068318-8068337 Msa0533270:intron 35.0%
GGATGTAAAATGAAACGAAC+CGG - chr4_1:8068500-8068519 Msa0533270:intron 35.0%
TTTATAAAAGGGCTTGTGAC+CGG + chr4_1:8068522-8068541 None:intergenic 35.0%
CCTAATAGACTTGGATCATA+GGG + chr4_1:8068648-8068667 None:intergenic 35.0%
CCTATGATCCAAGTCTATTA+GGG - chr4_1:8068646-8068665 Msa0533270:intron 35.0%
! ATCCAAGTCTATTAGGGTTT+TGG - chr4_1:8068652-8068671 Msa0533270:intron 35.0%
! TCCAAGTCTATTAGGGTTTT+GGG - chr4_1:8068653-8068672 Msa0533270:intron 35.0%
CTTATGAAATCAAGTGGCAT+AGG + chr4_1:8069151-8069170 None:intergenic 35.0%
! CTATGCCACTTGATTTCATA+AGG - chr4_1:8069149-8069168 Msa0533270:intron 35.0%
TGTGAGAATTATAGGTCACT+TGG - chr4_1:8069360-8069379 Msa0533270:intron 35.0%
AGCATAAGGCAATATCAAAG+AGG + chr4_1:8069466-8069485 None:intergenic 35.0%
ATGAAGAGGTTAGTAGCATA+AGG + chr4_1:8069480-8069499 None:intergenic 35.0%
GGATATGATGTAAAGGACAA+TGG - chr4_1:8069670-8069689 Msa0533270:intron 35.0%
! CATGCATATTCTAGCTATAG+TGG + chr4_1:8069742-8069761 None:intergenic 35.0%
ATTGGATCCCAAGGTTTATT+TGG + chr4_1:8069870-8069889 None:intergenic 35.0%
AGATTGTAAAAAAGTGGGGT+TGG + chr4_1:8069979-8069998 None:intergenic 35.0%
GGCATGAGATTGTAAAAAAG+TGG + chr4_1:8069985-8070004 None:intergenic 35.0%
GGAGTTTGAAGAATAGAAAG+AGG + chr4_1:8070015-8070034 None:intergenic 35.0%
GATTCTAAGTGAAGAATTGG+AGG + chr4_1:8070184-8070203 None:intergenic 35.0%
!! GGTGTTTTATCTTGGTTTTC+GGG + chr4_1:8070437-8070456 None:intergenic 35.0%
AAACCAAGATAAAACACCAC+AGG - chr4_1:8070439-8070458 Msa0533270:intron 35.0%
!!! GTGTTTCTTTTCAGGTGATT+AGG - chr4_1:8070531-8070550 Msa0533270:intron 35.0%
TTATGAGACCTATCCTTGTA+TGG - chr4_1:8070782-8070801 Msa0533270:intron 35.0%
GTAATCTCAGGACATCTAAA+GGG + chr4_1:8070972-8070991 None:intergenic 35.0%
! AACAATGACAGAGGTATATG+TGG - chr4_1:8071017-8071036 Msa0533270:intron 35.0%
! ACAATGACAGAGGTATATGT+GGG - chr4_1:8071018-8071037 Msa0533270:intron 35.0%
! GGTTTTGCTTCTTTCTACTA+CGG - chr4_1:8071131-8071150 Msa0533270:intron 35.0%
TAAGACATCCTAACCTTCTA+TGG - chr4_1:8071282-8071301 Msa0533270:CDS 35.0%
AAGACATCCTAACCTTCTAT+GGG - chr4_1:8071283-8071302 Msa0533270:CDS 35.0%
TCTATTACCCATAGAAGGTT+AGG + chr4_1:8071293-8071312 None:intergenic 35.0%
! ACAGTATTAGATGCCATTTC+AGG - chr4_1:8071460-8071479 Msa0533270:CDS 35.0%
! GCAAGTTTTGCACAGATAAA+GGG + chr4_1:8071574-8071593 None:intergenic 35.0%
! TTTGATTGATGCAGGTATTG+TGG - chr4_1:8071714-8071733 Msa0533270:CDS 35.0%
TAAAAAACCTACCAAACAGC+AGG - chr4_1:8071785-8071804 Msa0533270:five_prime_UTR 35.0%
!!! CGGTTTTGTTCGTTGTCATA+AGG + chr4_1:8064306-8064325 None:intergenic 40.0%
! TAGAGGTGGTGGTTAAATTG+GGG + chr4_1:8064348-8064367 None:intergenic 40.0%
! GTTAGAGGTGGTGGTTAAAT+TGG + chr4_1:8064350-8064369 None:intergenic 40.0%
!! TGAAGATGGTGTTGTTGAAG+AGG + chr4_1:8064393-8064412 None:intergenic 40.0%
GAGAAACAATGCAGCATCTT+TGG + chr4_1:8064554-8064573 None:intergenic 40.0%
TCGAATCAAACTTCTCATGC+AGG - chr4_1:8064624-8064643 Msa0533270:CDS 40.0%
CAAACTTCTCATGCAGGTAA+CGG - chr4_1:8064630-8064649 Msa0533270:CDS 40.0%
!!! GTGGTTTTTTTGCAGACTCA+TGG - chr4_1:8064717-8064736 Msa0533270:intron 40.0%
! GTGTAACTCTTTTACACCGA+CGG + chr4_1:8064823-8064842 None:intergenic 40.0%
! GCTTAACAACTGTTTCTCGT+TGG - chr4_1:8065294-8065313 Msa0533270:CDS 40.0%
!! CGTTGGTAGTTAATTGGTTG+TGG - chr4_1:8065311-8065330 Msa0533270:CDS 40.0%
AGAGCTATTTGAGGAACTCT+TGG + chr4_1:8065563-8065582 None:intergenic 40.0%
AAGAGTTCCTCAAATAGCTC+TGG - chr4_1:8065562-8065581 Msa0533270:intron 40.0%
ACAAGTTCCAGAGCTATTTG+AGG + chr4_1:8065572-8065591 None:intergenic 40.0%
ACTTAGGAATGCTCTAGCAT+AGG + chr4_1:8065655-8065674 None:intergenic 40.0%
GGGCATATTCACAATTCCAT+CGG + chr4_1:8065728-8065747 None:intergenic 40.0%
AATGCAAGTTGTGCATGAGA+TGG + chr4_1:8066226-8066245 None:intergenic 40.0%
! TTATATGTTCGACTTGCCTC+TGG - chr4_1:8066260-8066279 Msa0533270:intron 40.0%
ATACCCTTTAGACTGCAAAC+TGG + chr4_1:8066318-8066337 None:intergenic 40.0%
GTAATTAACTCCCCTGATCA+AGG - chr4_1:8066375-8066394 Msa0533270:intron 40.0%
CTTACGTTGACAAGATTTGC+AGG - chr4_1:8066536-8066555 Msa0533270:intron 40.0%
TTGCAGGCCATATCAATGAT+AGG - chr4_1:8066552-8066571 Msa0533270:intron 40.0%
TGCAGGCCATATCAATGATA+GGG - chr4_1:8066553-8066572 Msa0533270:intron 40.0%
TCAATGATAGGGAAGGAAGA+AGG - chr4_1:8066564-8066583 Msa0533270:intron 40.0%
!! AAGAAGGCATTAGAGGTTAC+TGG - chr4_1:8066580-8066599 Msa0533270:intron 40.0%
GACTGAGAGACATTTGACAT+AGG + chr4_1:8066777-8066796 None:intergenic 40.0%
! GGGCAAAACTGACTCAAAAA+TGG + chr4_1:8066895-8066914 None:intergenic 40.0%
! TTTGAGTCAGTTTTGCCCAT+AGG - chr4_1:8066897-8066916 Msa0533270:intron 40.0%
! TTGAGTCAGTTTTGCCCATA+GGG - chr4_1:8066898-8066917 Msa0533270:intron 40.0%
AATGACCAAAATGCCCCTAT+GGG + chr4_1:8066915-8066934 None:intergenic 40.0%
AAATGACCAAAATGCCCCTA+TGG + chr4_1:8066916-8066935 None:intergenic 40.0%
TCAACAGGGAAATGACACAA+AGG + chr4_1:8067005-8067024 None:intergenic 40.0%
!! TTTTCAGTCATTTTAGCCCC+AGG - chr4_1:8067054-8067073 Msa0533270:intron 40.0%
!! TTTCAGTCATTTTAGCCCCA+GGG - chr4_1:8067055-8067074 Msa0533270:intron 40.0%
AAGTACCTCATTTAGGCCAT+TGG - chr4_1:8067123-8067142 Msa0533270:intron 40.0%
!! AACGGACTAAAACGAACCAA+TGG + chr4_1:8067142-8067161 None:intergenic 40.0%
TACAGGTGTCAGTTCCTTAT+TGG - chr4_1:8067309-8067328 Msa0533270:intron 40.0%
GTAACAAACTCTTGGACAAG+TGG + chr4_1:8067336-8067355 None:intergenic 40.0%
TAGCTGACACTTGTGCAATT+TGG + chr4_1:8067391-8067410 None:intergenic 40.0%
AATCTGGTGAATGGATCTGT+TGG + chr4_1:8067439-8067458 None:intergenic 40.0%
!! GTGGTGGTTTGAGTTTGTTA+CGG + chr4_1:8067514-8067533 None:intergenic 40.0%
!!! GTGGTTTTAGTTTGTTACGG+TGG + chr4_1:8067544-8067563 None:intergenic 40.0%
GTGTTCAATTCAGCAAGAAG+CGG - chr4_1:8067683-8067702 Msa0533270:intron 40.0%
TCGAATTCGAAGCAAATCAG+AGG - chr4_1:8067851-8067870 Msa0533270:intron 40.0%
CGAATTCGAAGCAAATCAGA+GGG - chr4_1:8067852-8067871 Msa0533270:intron 40.0%
GAATTCGAAGCAAATCAGAG+GGG - chr4_1:8067853-8067872 Msa0533270:intron 40.0%
TCAGATTCTCTCTAAGCTTC+TGG + chr4_1:8067907-8067926 None:intergenic 40.0%
AAATAAACGGTGGATCTCCA+TGG + chr4_1:8068141-8068160 None:intergenic 40.0%
TTTGAAAACCTAGAAGCCGA+AGG - chr4_1:8068242-8068261 Msa0533270:intron 40.0%
GCATGGATCTACTCAAAACA+AGG - chr4_1:8068271-8068290 Msa0533270:intron 40.0%
TTGCAGAAAACGTTCAAGTG+TGG - chr4_1:8068361-8068380 Msa0533270:intron 40.0%
ATGATCTTCATCTTCTCCGA+TGG + chr4_1:8068426-8068445 None:intergenic 40.0%
CGGAGAAGATGAAGATCATA+AGG - chr4_1:8068427-8068446 Msa0533270:intron 40.0%
TGAAGATCATAAGGTGAGAG+AGG - chr4_1:8068436-8068455 Msa0533270:intron 40.0%
!! CGGTTCGGTGGTTTATAAAA+GGG + chr4_1:8068533-8068552 None:intergenic 40.0%
! CCTTTTATAAACCACCGAAC+CGG - chr4_1:8068531-8068550 Msa0533270:intron 40.0%
GATGTAAAACCAAACGAACC+AGG + chr4_1:8068568-8068587 None:intergenic 40.0%
!! TGGTTTTACATCTTAGGCGT+TGG - chr4_1:8068576-8068595 Msa0533270:intron 40.0%
CCCTATGATCCAAGTCTATT+AGG - chr4_1:8068645-8068664 Msa0533270:intron 40.0%
CCCTAATAGACTTGGATCAT+AGG + chr4_1:8068649-8068668 None:intergenic 40.0%
AGGAAAACAAAAACCAGCAG+AGG + chr4_1:8068692-8068711 None:intergenic 40.0%
AGAAAATAGCACAGACATGC+AGG + chr4_1:8068749-8068768 None:intergenic 40.0%
TGAACAAATTTGGACAGGCA+GGG + chr4_1:8068784-8068803 None:intergenic 40.0%
GAATGGGAATTAAGGCTACA+TGG + chr4_1:8069303-8069322 None:intergenic 40.0%
AGAGGCCATAGAATGTATCT+AGG - chr4_1:8069649-8069668 Msa0533270:intron 40.0%
GTATGCTTAGATGAATGCCT+AGG - chr4_1:8069783-8069802 Msa0533270:intron 40.0%
TTTACAATCTCATGCCCTTG+AGG - chr4_1:8069989-8070008 Msa0533270:intron 40.0%
AGAATAGAAAGAGGCCTCAA+GGG + chr4_1:8070006-8070025 None:intergenic 40.0%
AAGAATAGAAAGAGGCCTCA+AGG + chr4_1:8070007-8070026 None:intergenic 40.0%
!! TTTTTGAGAGAGAACTACGG+TGG - chr4_1:8070074-8070093 Msa0533270:intron 40.0%
! GGTGGATTTGATCCCTTAAT+CGG - chr4_1:8070092-8070111 Msa0533270:intron 40.0%
GTGGATTTGATCCCTTAATC+GGG - chr4_1:8070093-8070112 Msa0533270:intron 40.0%
! TCACCTGTGGTGTTTTATCT+TGG + chr4_1:8070445-8070464 None:intergenic 40.0%
AAGAGCTGAACAGCACTATA+AGG + chr4_1:8070563-8070582 None:intergenic 40.0%
GTACCAAACATTGCATGTTC+AGG - chr4_1:8070634-8070653 Msa0533270:intron 40.0%
ACACCTGAACATGCAATGTT+TGG + chr4_1:8070640-8070659 None:intergenic 40.0%
CGTAATCTCAGGACATCTAA+AGG + chr4_1:8070973-8070992 None:intergenic 40.0%
CAACAGCTAATCGTAATCTC+AGG + chr4_1:8070984-8071003 None:intergenic 40.0%
! TTACGATTAGCTGTTGAACC+TGG - chr4_1:8070988-8071007 Msa0533270:intron 40.0%
! TACGATTAGCTGTTGAACCT+GGG - chr4_1:8070989-8071008 Msa0533270:intron 40.0%
!! AGATGCCATTTCAGGTTAGT+TGG - chr4_1:8071468-8071487 Msa0533270:CDS 40.0%
CAATGCCAACTAACCTGAAA+TGG + chr4_1:8071476-8071495 None:intergenic 40.0%
! CGCAAGTTTTGCACAGATAA+AGG + chr4_1:8071575-8071594 None:intergenic 40.0%
TTCGTTCTACTGCGTGTGTT+TGG + chr4_1:8064257-8064276 None:intergenic 45.0%
!! AGATGGTGTTGTTGAAGAGG+TGG + chr4_1:8064390-8064409 None:intergenic 45.0%
GAATTTGGAAGGAATGGTGG+TGG + chr4_1:8064434-8064453 None:intergenic 45.0%
!! GTTGTTCGGTTTGGTTTGAG+AGG + chr4_1:8064470-8064489 None:intergenic 45.0%
CAGACTCATGGAGTGAGAAT+TGG - chr4_1:8064729-8064748 Msa0533270:intron 45.0%
CTTCACGTATAACCCAAGCA+CGG + chr4_1:8065236-8065255 None:intergenic 45.0%
TCTAGAAGGAGGGGAACATT+TGG + chr4_1:8065782-8065801 None:intergenic 45.0%
!! TAGATGTGGCTCTAGAAGGA+GGG + chr4_1:8065792-8065811 None:intergenic 45.0%
!! ATAGATGTGGCTCTAGAAGG+AGG + chr4_1:8065793-8065812 None:intergenic 45.0%
TATTGTCAAGGAGTTTGGGG+AGG + chr4_1:8066444-8066463 None:intergenic 45.0%
GGCCATATCAATGATAGGGA+AGG - chr4_1:8066557-8066576 Msa0533270:intron 45.0%
AGGCATTAGAGGTTACTGGA+AGG - chr4_1:8066584-8066603 Msa0533270:intron 45.0%
GGCATTAGAGGTTACTGGAA+GGG - chr4_1:8066585-8066604 Msa0533270:intron 45.0%
! TGAGTCAGTTTTGCCCATAG+GGG - chr4_1:8066899-8066918 Msa0533270:intron 45.0%
!!! TTTTGCCCATAGGGGCATTT+TGG - chr4_1:8066907-8066926 Msa0533270:intron 45.0%
!! TTCAGTCATTTTAGCCCCAG+GGG - chr4_1:8067056-8067075 Msa0533270:intron 45.0%
AAATGACCAAAATGCCCCTG+GGG + chr4_1:8067073-8067092 None:intergenic 45.0%
GAAATGACCAAAATGCCCCT+GGG + chr4_1:8066917-8066936 None:intergenic 45.0%
TGAAATGACCAAAATGCCCC+TGG + chr4_1:8066918-8066937 None:intergenic 45.0%
ACGAACCAATGGCCTAAATG+AGG + chr4_1:8067131-8067150 None:intergenic 45.0%
CCTGTACAGACCTAATGACT+TGG + chr4_1:8067295-8067314 None:intergenic 45.0%
CCAAGTCATTAGGTCTGTAC+AGG - chr4_1:8067292-8067311 Msa0533270:intron 45.0%
CTTGGACAAGTGGACCAATA+AGG + chr4_1:8067326-8067345 None:intergenic 45.0%
!! TGGCATTGACTGAGATGACT+GGG + chr4_1:8067419-8067438 None:intergenic 45.0%
!! TTGGCATTGACTGAGATGAC+TGG + chr4_1:8067420-8067439 None:intergenic 45.0%
TTTGTTACGGTGGAGAGAGT+TGG + chr4_1:8067501-8067520 None:intergenic 45.0%
!! GTGGTTTGAGTTTGTTACGG+TGG + chr4_1:8067511-8067530 None:intergenic 45.0%
!! AGTTTGTTACGGTGGTTCTG+TGG + chr4_1:8067536-8067555 None:intergenic 45.0%
! GGTGATTGATTCTGTTGTGG+TGG + chr4_1:8067563-8067582 None:intergenic 45.0%
GAATTTGAGGATTCTGGTGG+CGG + chr4_1:8067584-8067603 None:intergenic 45.0%
AAGCGGTTCGAATTTGCAGA+AGG - chr4_1:8067700-8067719 Msa0533270:intron 45.0%
TGCTTGAATTGCGAAGGTGA+AGG + chr4_1:8067763-8067782 None:intergenic 45.0%
TGAGCGAAAGGAAGAAGAAG+AGG - chr4_1:8067826-8067845 Msa0533270:intron 45.0%
GAGCGAAAGGAAGAAGAAGA+GGG - chr4_1:8067827-8067846 Msa0533270:intron 45.0%
AAGCAAATCAGAGGGGAAGA+AGG - chr4_1:8067860-8067879 Msa0533270:intron 45.0%
TCGAATTCCCATCCAAAACC+AGG - chr4_1:8067950-8067969 Msa0533270:intron 45.0%
AACCCTAGAGTTCGAATCCA+TGG - chr4_1:8068121-8068140 Msa0533270:intron 45.0%
CTCCATGGATTCGAACTCTA+GGG + chr4_1:8068126-8068145 None:intergenic 45.0%
TCTCCATGGATTCGAACTCT+AGG + chr4_1:8068127-8068146 None:intergenic 45.0%
AGATCCATGCTCGAAACCTT+CGG + chr4_1:8068261-8068280 None:intergenic 45.0%
!! CCTCTTTAAGATTCTGGGAC+TGG + chr4_1:8068312-8068331 None:intergenic 45.0%
CCAGTCCCAGAATCTTAAAG+AGG - chr4_1:8068309-8068328 Msa0533270:intron 45.0%
GGAAACTCAGGTGAACACAA+CGG - chr4_1:8068330-8068349 Msa0533270:intron 45.0%
CAGAAAACGTTCAAGTGTGG+TGG - chr4_1:8068364-8068383 Msa0533270:intron 45.0%
ATCTTCTCCGATGGACACAA+CGG + chr4_1:8068417-8068436 None:intergenic 45.0%
TTAGCTTAGAGAGAGAGACG+AGG - chr4_1:8068479-8068498 Msa0533270:intron 45.0%
!! CCGGTTCGGTGGTTTATAAA+AGG + chr4_1:8068534-8068553 None:intergenic 45.0%
GATCTCAGGTTTGATCCAGT+TGG - chr4_1:8068598-8068617 Msa0533270:intron 45.0%
ATCCAGTTGGAGCAATCCAA+CGG - chr4_1:8068611-8068630 Msa0533270:intron 45.0%
GCCCAAAACCCTAATAGACT+TGG + chr4_1:8068657-8068676 None:intergenic 45.0%
GGCGCATAGCAAGAAAATTC+AGG + chr4_1:8068712-8068731 None:intergenic 45.0%
GAACAAATTTGGACAGGCAG+GGG + chr4_1:8068783-8068802 None:intergenic 45.0%
GTGAACAAATTTGGACAGGC+AGG + chr4_1:8068785-8068804 None:intergenic 45.0%
CAATGGGATATTGGATCCCA+AGG + chr4_1:8069879-8069898 None:intergenic 45.0%
TTGCCTACGTACCCGATTAA+GGG + chr4_1:8070107-8070126 None:intergenic 45.0%
GCGCGCGTAGAAATTAAAGA+CGG - chr4_1:8070250-8070269 Msa0533270:intron 45.0%
AGCAAAACCCTTGAGAATCG+AGG + chr4_1:8070342-8070361 None:intergenic 45.0%
TATCTAGTGATGCTCACCTG+TGG + chr4_1:8070458-8070477 None:intergenic 45.0%
TTTATAGGTCGCCTTGAGCA+TGG - chr4_1:8071097-8071116 Msa0533270:intron 45.0%
TTCCTCTCTTACCATGCTCA+AGG + chr4_1:8071111-8071130 None:intergenic 45.0%
TTGAGCATGGTAAGAGAGGA+AGG - chr4_1:8071110-8071129 Msa0533270:intron 45.0%
TTCCGATAAGAGAAGGACCA+AGG + chr4_1:8071157-8071176 None:intergenic 45.0%
GGAGCTATTCCGATAAGAGA+AGG + chr4_1:8071164-8071183 None:intergenic 45.0%
CAGAGGATAGCATGTAAGTG+TGG + chr4_1:8071395-8071414 None:intergenic 45.0%
CACACTTACATGCTATCCTC+TGG - chr4_1:8071393-8071412 Msa0533270:intron 45.0%
TCGAAGACAGATGCAACTGA+AGG - chr4_1:8071423-8071442 Msa0533270:CDS 45.0%
CGAAGACAGATGCAACTGAA+GGG - chr4_1:8071424-8071443 Msa0533270:CDS 45.0%
GTGGCACAAGATGGAGTTAT+TGG - chr4_1:8071733-8071752 Msa0533270:exon 45.0%
!! AAGCATTGGGCACAAATCCT+CGG + chr4_1:8071765-8071784 None:intergenic 45.0%
! ACAAGTACCTGCTGTTTGGT+AGG + chr4_1:8071795-8071814 None:intergenic 45.0%
TGAAACGACGTCGTTAGAGG+TGG + chr4_1:8064362-8064381 None:intergenic 50.0%
GGATGAAACGACGTCGTTAG+AGG + chr4_1:8064365-8064384 None:intergenic 50.0%
!! GGTGTTGTTGAAGAGGTGGT+TGG + chr4_1:8064386-8064405 None:intergenic 50.0%
! TGCGTCGGTGAAAGTGAAGA+TGG + chr4_1:8064407-8064426 None:intergenic 50.0%
!! TTTGGAAGGAATGGTGGTGG+TGG + chr4_1:8064431-8064450 None:intergenic 50.0%
GGCGAATTTGGAAGGAATGG+TGG + chr4_1:8064437-8064456 None:intergenic 50.0%
GGTGGCGAATTTGGAAGGAA+TGG + chr4_1:8064440-8064459 None:intergenic 50.0%
!! TTTGGTTTGAGAGGCGGAGA+CGG + chr4_1:8064461-8064480 None:intergenic 50.0%
!! GTTCGGTTTGGTTTGAGAGG+CGG + chr4_1:8064467-8064486 None:intergenic 50.0%
GGCGAATTCGTTGTTCGGTT+TGG + chr4_1:8064479-8064498 None:intergenic 50.0%
TTTGGGAACAAGAGCGACGA+CGG + chr4_1:8064536-8064555 None:intergenic 50.0%
! GATGCTGCATTGTTTCTCGC+CGG - chr4_1:8064556-8064575 Msa0533270:intron 50.0%
TCGATCAAGTGGAGCAGTGA+CGG + chr4_1:8064608-8064627 None:intergenic 50.0%
AGTAGCTGCAGAGCTTGCAA+AGG + chr4_1:8065625-8065644 None:intergenic 50.0%
CAAGCTCTGCAGCTACTGAT+AGG - chr4_1:8065628-8065647 Msa0533270:intron 50.0%
!! AGATGTGGCTCTAGAAGGAG+GGG + chr4_1:8065791-8065810 None:intergenic 50.0%
!! GGGAAGGAAGAAGGCATTAG+AGG - chr4_1:8066573-8066592 Msa0533270:intron 50.0%
!!! TTTTAGCCCCAGGGGCATTT+TGG - chr4_1:8067064-8067083 Msa0533270:intron 50.0%
CACACGAAATTTCGGCAGAG+AGG - chr4_1:8067093-8067112 Msa0533270:intron 50.0%
! TTGTTACGGTGGTTCTGTGG+TGG + chr4_1:8067533-8067552 None:intergenic 50.0%
! GGCGGTGATTGATTCTGTTG+TGG + chr4_1:8067566-8067585 None:intergenic 50.0%
GAAGTTCCTGCGATCACGAA+GGG - chr4_1:8067800-8067819 Msa0533270:intron 50.0%
AAACGAACCAGGACTGAACC+AGG + chr4_1:8068557-8068576 None:intergenic 50.0%
! TGGTTCAGTCCTGGTTCGTT+TGG - chr4_1:8068556-8068575 Msa0533270:intron 50.0%
!! CATCTTAGGCGTTGGATCTC+AGG - chr4_1:8068584-8068603 Msa0533270:intron 50.0%
TGGATCATAGGGAGCAACCA+TGG + chr4_1:8068637-8068656 None:intergenic 50.0%
!!! GTCTATTAGGGTTTTGGGCC+TGG - chr4_1:8068658-8068677 Msa0533270:intron 50.0%
TAGCACAGACATGCAGGCAT+GGG + chr4_1:8068743-8068762 None:intergenic 50.0%
ATAGCACAGACATGCAGGCA+TGG + chr4_1:8068744-8068763 None:intergenic 50.0%
AGTGGTGTGTGTGCATGTGT+CGG + chr4_1:8069724-8069743 None:intergenic 50.0%
GATCCCTTAATCGGGTACGT+AGG - chr4_1:8070101-8070120 Msa0533270:intron 50.0%
CTTGCCTACGTACCCGATTA+AGG + chr4_1:8070108-8070127 None:intergenic 50.0%
CTTAATCGGGTACGTAGGCA+AGG - chr4_1:8070106-8070125 Msa0533270:intron 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG + chr4_1:8070307-8070326 None:intergenic 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG + chr4_1:8070314-8070333 None:intergenic 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG + chr4_1:8070319-8070338 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG + chr4_1:8070337-8070356 None:intergenic 50.0%
AACGATGAGCTCTCTGTTGC+CGG - chr4_1:8070701-8070720 Msa0533270:intron 50.0%
TCTGTCATTGTTCGACACCC+AGG + chr4_1:8071009-8071028 None:intergenic 50.0%
!! TGGGTGTCGAACAATGACAG+AGG - chr4_1:8071008-8071027 Msa0533270:intron 50.0%
GCTTCTTTCTACTACGGCCT+TGG - chr4_1:8071137-8071156 Msa0533270:intron 50.0%
GGCCTTGGTCCTTCTCTTAT+CGG - chr4_1:8071152-8071171 Msa0533270:intron 50.0%
! AAGAGATGCTGAAAGCACGG+CGG + chr4_1:8071371-8071390 None:intergenic 50.0%
GGCAAGAGATGCTGAAAGCA+CGG + chr4_1:8071374-8071393 None:intergenic 50.0%
TGTCTTCGAACTGTGTCCAG+AGG + chr4_1:8071412-8071431 None:intergenic 50.0%
! GCAGGTATTGTGGCACAAGA+TGG - chr4_1:8071724-8071743 Msa0533270:exon 50.0%
!! GGAGTTATTGGCTTGTACCG+AGG - chr4_1:8071745-8071764 Msa0533270:five_prime_UTR 50.0%
ATTGGGGATGTTACGCCACG+TGG + chr4_1:8064332-8064351 None:intergenic 55.0%
AACGACGTCGTTAGAGGTGG+TGG + chr4_1:8064359-8064378 None:intergenic 55.0%
!! AATGGTGGTGGTGGTTGCGT+CGG + chr4_1:8064422-8064441 None:intergenic 55.0%
GAGACGGTGGCGAATTTGGA+AGG + chr4_1:8064445-8064464 None:intergenic 55.0%
GTCGGGGCGAATTCGTTGTT+CGG + chr4_1:8064484-8064503 None:intergenic 55.0%
TTAAGAAGCTGAGCCGGCGT+CGG + chr4_1:8064502-8064521 None:intergenic 55.0%
GGGTGGTTAAGAAGCTGAGC+CGG + chr4_1:8064508-8064527 None:intergenic 55.0%
!! GACGGTTTTAGCAGCAGCTC+CGG + chr4_1:8064590-8064609 None:intergenic 55.0%
! ACTGTCGGTTATGCCGTGCT+TGG - chr4_1:8065220-8065239 Msa0533270:intron 55.0%
! CTGTCGGTTATGCCGTGCTT+GGG - chr4_1:8065221-8065240 Msa0533270:intron 55.0%
! TTACGGTGGTTCTGTGGTGG+TGG + chr4_1:8067530-8067549 None:intergenic 55.0%
CGAAGTTCCTGCGATCACGA+AGG - chr4_1:8067799-8067818 Msa0533270:intron 55.0%
TCAAAGCCCTTCGTGATCGC+AGG + chr4_1:8067809-8067828 None:intergenic 55.0%
!! CACGAAGGGCTTTGAGCGAA+AGG - chr4_1:8067814-8067833 Msa0533270:intron 55.0%
GCTCGAAACCTTCGGCTTCT+AGG + chr4_1:8068253-8068272 None:intergenic 55.0%
GAAGCCGAAGGTTTCGAGCA+TGG - chr4_1:8068254-8068273 Msa0533270:intron 55.0%
TTCTCCGATGGACACAACGG+CGG + chr4_1:8068414-8068433 None:intergenic 55.0%
TATAAACCACCGAACCGGCC+TGG - chr4_1:8068536-8068555 Msa0533270:intron 55.0%
TTGGAGCAATCCAACGGCCA+TGG - chr4_1:8068617-8068636 Msa0533270:intron 55.0%
AGCACAGACATGCAGGCATG+GGG + chr4_1:8068742-8068761 None:intergenic 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG + chr4_1:8069712-8069731 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG + chr4_1:8070318-8070337 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG - chr4_1:8070315-8070334 Msa0533270:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG - chr4_1:8070332-8070351 Msa0533270:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG + chr4_1:8070336-8070355 None:intergenic 55.0%
AGCACCTGCTGCAAGTCTTC+CGG + chr4_1:8070723-8070742 None:intergenic 55.0%
! CTTGCAGCAGGTGCTTTTGC+AGG - chr4_1:8070728-8070747 Msa0533270:intron 55.0%
CGCCTTGAGCATGGTAAGAG+AGG - chr4_1:8071106-8071125 Msa0533270:intron 55.0%
CGAACAAAACCGTCGCCACG+TGG - chr4_1:8064314-8064333 Msa0533270:intron 60.0%
GATGTTACGCCACGTGGCGA+CGG + chr4_1:8064326-8064345 None:intergenic 60.0%
TAAGAAGCTGAGCCGGCGTC+GGG + chr4_1:8064501-8064520 None:intergenic 60.0%
ACAAGAGCGACGACGGCGAT+CGG + chr4_1:8064529-8064548 None:intergenic 60.0%
!! TTTCTCGCCGGTGCTGTAGC+CGG - chr4_1:8064568-8064587 Msa0533270:CDS 60.0%
CTCAGAGCATGCTCTGCCGA+TGG - chr4_1:8065709-8065728 Msa0533270:intron 60.0%
GCTTCCGCCGTTGTGTCCAT+CGG - chr4_1:8068407-8068426 Msa0533270:intron 60.0%
AGGACTGAACCAGGCCGGTT+CGG + chr4_1:8068548-8068567 None:intergenic 60.0%
GAACCAGGACTGAACCAGGC+CGG + chr4_1:8068553-8068572 None:intergenic 60.0%
GGCCGTTGGATTGCTCCAAC+TGG + chr4_1:8068616-8068635 None:intergenic 60.0%
TAGGGAGCAACCATGGCCGT+TGG + chr4_1:8068630-8068649 None:intergenic 60.0%
CCAGCAGAGGACAAACGTCC+AGG + chr4_1:8068679-8068698 None:intergenic 60.0%
CCTGGACGTTTGTCCTCTGC+TGG - chr4_1:8068676-8068695 Msa0533270:intron 60.0%
ACAGACATGCAGGCATGGGG+GGG + chr4_1:8068739-8068758 None:intergenic 60.0%
CACAGACATGCAGGCATGGG+GGG + chr4_1:8068740-8068759 None:intergenic 60.0%
GCACAGACATGCAGGCATGG+GGG + chr4_1:8068741-8068760 None:intergenic 60.0%
CTCCCGGACCTCGATTCTCA+AGG - chr4_1:8070331-8070350 Msa0533270:intron 60.0%
GTTGCCGGAAGACTTGCAGC+AGG - chr4_1:8070716-8070735 Msa0533270:intron 60.0%
GGCGGAGACGGTGGCGAATT+TGG + chr4_1:8064449-8064468 None:intergenic 65.0%
GGTTTGAGAGGCGGAGACGG+TGG + chr4_1:8064458-8064477 None:intergenic 65.0%
CAACGAATTCGCCCCGACGC+CGG - chr4_1:8064486-8064505 Msa0533270:intron 65.0%
AAGAAGCTGAGCCGGCGTCG+GGG + chr4_1:8064500-8064519 None:intergenic 65.0%
CAAGAGCGACGACGGCGATC+GGG + chr4_1:8064528-8064547 None:intergenic 65.0%
AGCAGCTCCGGCTACAGCAC+CGG + chr4_1:8064578-8064597 None:intergenic 65.0%
! TTCAAGTGTGGTGGCGCCGC+CGG - chr4_1:8068373-8068392 Msa0533270:intron 65.0%
! ACACAACGGCGGAAGCGTGG+TGG + chr4_1:8068403-8068422 None:intergenic 65.0%
TGGACACAACGGCGGAAGCG+TGG + chr4_1:8068406-8068425 None:intergenic 65.0%
!! ACTGAACCAGGCCGGTTCGG+TGG + chr4_1:8068545-8068564 None:intergenic 65.0%
GAACCGGCCTGGTTCAGTCC+TGG - chr4_1:8068547-8068566 Msa0533270:intron 65.0%
AGACATGCAGGCATGGGGGG+GGG + chr4_1:8068737-8068756 None:intergenic 65.0%
CAGACATGCAGGCATGGGGG+GGG + chr4_1:8068738-8068757 None:intergenic 65.0%
ACATGCAGGCATGGGGGGGG+GGG + chr4_1:8068735-8068754 None:intergenic 70.0%
GACATGCAGGCATGGGGGGG+GGG + chr4_1:8068736-8068755 None:intergenic 70.0%
GAGCGACGACGGCGATCGGG+TGG + chr4_1:8064525-8064544 None:intergenic 75.0%
! AAGTGTGGTGGCGCCGCCGG+CGG - chr4_1:8068376-8068395 Msa0533270:intron 75.0%
GAAGCGTGGTGGTCCGCCGG+CGG + chr4_1:8068392-8068411 None:intergenic 75.0%
! GCGGAAGCGTGGTGGTCCGC+CGG + chr4_1:8068395-8068414 None:intergenic 75.0%
ATGCAGGCATGGGGGGGGGG+GGG + chr4_1:8068733-8068752 None:intergenic 75.0%
CATGCAGGCATGGGGGGGGG+GGG + chr4_1:8068734-8068753 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 8064231 8071816 8064231 ID=Msa0533270;Name=Msa0533270
chr4_1 mRNA 8064231 8071816 8064231 ID=Msa0533270-mRNA-1;Parent=Msa0533270;Name=Msa0533270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=76|0.28|0.12|1|1|1|8|0|325
chr4_1 exon 8064231 8064319 8064231 ID=Msa0533270-mRNA-1:exon:2765;Parent=Msa0533270-mRNA-1
chr4_1 exon 8064566 8064735 8064566 ID=Msa0533270-mRNA-1:exon:2764;Parent=Msa0533270-mRNA-1
chr4_1 exon 8064831 8064943 8064831 ID=Msa0533270-mRNA-1:exon:2763;Parent=Msa0533270-mRNA-1
chr4_1 exon 8065018 8065086 8065018 ID=Msa0533270-mRNA-1:exon:2762;Parent=Msa0533270-mRNA-1
chr4_1 exon 8065281 8065364 8065281 ID=Msa0533270-mRNA-1:exon:2761;Parent=Msa0533270-mRNA-1
chr4_1 exon 8065446 8065502 8065446 ID=Msa0533270-mRNA-1:exon:2760;Parent=Msa0533270-mRNA-1
chr4_1 exon 8071259 8071315 8071259 ID=Msa0533270-mRNA-1:exon:2759;Parent=Msa0533270-mRNA-1
chr4_1 exon 8071402 8071816 8071402 ID=Msa0533270-mRNA-1:exon:2758;Parent=Msa0533270-mRNA-1
chr4_1 five_prime_UTR 8071741 8071816 8071741 ID=Msa0533270-mRNA-1:five_prime_utr;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8071402 8071740 8071402 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8071259 8071315 8071259 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8065446 8065502 8065446 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8065281 8065364 8065281 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8065018 8065086 8065018 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8064831 8064943 8064831 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8064566 8064735 8064566 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
chr4_1 CDS 8064231 8064319 8064231 ID=Msa0533270-mRNA-1:cds;Parent=Msa0533270-mRNA-1
Gene Sequence

>Msa0533270

ATGACAACGAACAAAACCGTCGCCACGTGGCGTAACATCCCCAATTTAACCACCACCTCTAACGACGTCGTTTCATCCAACCACCTCTTCAACAACACCATCTTCACTTTCACCGACGCAACCACCACCACCATTCCTTCCAAATTCGCCACCGTCTCCGCCTCTCAAACCAAACCGAACAACGAATTCGCCCCGACGCCGGCTCAGCTTCTTAACCACCCGATCGCCGTCGTCGCTCTTGTTCCCAAAGATGCTGCATTGTTTCTCGCCGGTGCTGTAGCCGGAGCTGCTGCTAAAACCGTCACTGCTCCACTTGATCGAATCAAACTTCTCATGCAGACTCATGGAGTGAGAATTGGACAAGAAAGTGCTAAGAAGACAATTGGTTTCATTGAGGTGATTAGGGTTATACCTTATAGTGCTGTTCAGCTCTTTGCTTATGAAATTTATAAGAAAATATTCAAGGGAAAAAACGATGAGCTCTCTGTTGCCGGAAGACTTGCAGCAGGTGCTTTTGCAGGCATGACATCAACTTTTATAACTTACCCTTTAGATGTCCTGAGATTACGATTAGCTGTTGAACCTGGGTGTCGAACAATGACAGAGGTCGCCTTGAGCATGGTAAGAGAGGAAGGTTTTGCTTCTTTCTACTACGGCCTTGGTCCTTCTCTTATCGGAATAGCTCCATATATTGCAGTTAACTTTTGTGTTTTTGACTTACTAAAGAAGTCGTTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCTAGTCACCGCCGTGCTTTCAGCATCTCTTGCCACACTTACATGCTATCCTCTGGACACAGTTCGAAGACAGATGCAACTGAAGGGTACACCTTATAAGACAGTATTAGATGCCATTTCAGGTATTGTGGCACAAGATGGAGTTATTGGCTTGTACCGAGGATTTGTGCCCAATGCTTTAAAAAACCTACCAAACAGCAGGTACTTGTGA
Protein sequence

>Msa0533270

MTTNKTVATWRNIPNLTTTSNDVVSSNHLFNNTIFTFTDATTTTIPSKFATVSASQTKPNNEFAPTPAQLLNHPIAVVALVPKDAALFLAGAVAGAAAKTVTAPLDRIKLLMQTHGVRIGQESAKKTIGFIEVIRVIPYSAVQLFAYEIYKKIFKGKNDELSVAGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGCRTMTEVALSMVREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVAQDGVIGLYRGFVPNALKNLPNSRYL*