AlfalfaGEDB | MS.gene001103

M. sativa cultivar XinJiangDaYe / MS.gene001103

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001103.t1	XP_024626723.1	89.5	531	43	1	1	531	1	518	7.80E-259	902.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001103.t1	A0A396GZ36	83.5	568	37	3	1	531	1	548	2.5e-251	877.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene94776	PPI
MS.gene001103	MS.gene055030	PPI
MS.gene001103	MS.gene84589	PPI
MS.gene001103	MS.gene66062	PPI
MS.gene001103	MS.gene055093	PPI
MS.gene001103	MS.gene84601	PPI
MS.gene001103	MS.gene037652	PPI
MS.gene001103	MS.gene45984	PPI
MS.gene001103	MS.gene055035	PPI
MS.gene001103	MS.gene048074	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001103.t1	MTR_7g066570	84.155	568	30	3	1	531	1	545	0.0	929
MS.gene001103.t1	MTR_7g012680	64.431	492	96	4	1	455	1	450	0.0	585
MS.gene001103.t1	MTR_7g058710	53.678	503	162	9	1	454	1	481	1.19e-167	486
MS.gene001103.t1	MTR_7g066260	54.141	495	150	8	6	456	7	468	2.41e-156	457
MS.gene001103.t1	MTR_7g066340	54.021	485	150	8	5	450	3	453	3.42e-150	441
MS.gene001103.t1	MTR_7g066350	55.031	487	138	9	10	451	5	455	4.24e-150	440
MS.gene001103.t1	MTR_7g066350	32.365	241	127	11	224	444	3	227	1.74e-17	85.9
MS.gene001103.t1	MTR_7g066580	55.310	452	174	8	20	452	1	443	6.97e-150	439
MS.gene001103.t1	MTR_1g041315	51.134	485	152	7	1	434	1	451	1.03e-144	427
MS.gene001103.t1	MTR_2g029400	53.034	445	164	8	1	440	1	405	3.04e-138	408

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001103.t1	AT5G01120	31.950	482	272	8	15	446	10	485	9.52e-63	215
MS.gene001103.t1	AT5G43240	31.200	500	256	10	15	446	10	489	1.73e-60	209
MS.gene001103.t1	AT5G43240	31.200	500	256	10	15	446	10	489	1.73e-60	209
MS.gene001103.t1	AT5G43240	31.200	500	256	10	15	446	10	489	1.73e-60	209
MS.gene001103.t1	AT5G01150	32.568	479	267	10	17	450	12	479	8.32e-55	194
MS.gene001103.t1	AT5G01150	25.887	282	168	11	222	486	4	261	1.81e-12	70.5
MS.gene001103.t1	AT3G09140	31.187	497	264	10	17	450	12	493	6.74e-53	188
MS.gene001103.t1	AT5G01140	30.316	475	255	8	17	450	12	451	1.18e-52	187
MS.gene001103.t1	AT5G01130	31.933	476	260	10	6	450	2	444	4.00e-51	182
MS.gene001103.t1	AT3G09110	34.304	309	166	4	17	289	12	319	7.67e-49	173

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Find 106 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCCTCTATCTGATT+TGG	0.327730	7.1:+35178683	MS.gene001103:CDS
AAAGTATGTACCATTTAAAG+TGG	0.485460	7.1:+35178536	MS.gene001103:CDS
AAAGTTGTGTATGCTGAGGC+TGG	0.508934	7.1:+35177324	MS.gene001103:CDS
AACAATATTGAGTTTCTGAT+TGG	0.324199	7.1:+35178087	MS.gene001103:CDS
AACCTGCTTGCAAGCAGTGG+AGG	0.563153	7.1:-35180793	None:intergenic
AACTGCTTGCTCATTACAAG+CGG	0.590645	7.1:-35180889	None:intergenic
AAGAACCAGATATTACCAAT+TGG	0.527915	7.1:+35178399	MS.gene001103:CDS
AAGCTTATGGCCTGCTGGTA+TGG	0.388027	7.1:-35180850	None:intergenic
AAGTTGTGTATGCTGAGGCT+GGG	0.646725	7.1:+35177325	MS.gene001103:CDS
AATATTGAAGCAGTGAGATT+TGG	0.357605	7.1:+35177426	MS.gene001103:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAAGCTGGATGATTG+AGG	-	chr7.1:35180127-35180146	None:intergenic	30.0%
AAGAACCAGATATTACCAAT+TGG	+	chr7.1:35178399-35178418	MS.gene001103:CDS	30.0%
AATATTGAAGCAGTGAGATT+TGG	+	chr7.1:35177426-35177445	MS.gene001103:CDS	30.0%
AATTGGAGATAAACTCAAGA+AGG	-	chr7.1:35180272-35180291	None:intergenic	30.0%
ACTATGATTACACAAGAATG+AGG	+	chr7.1:35178457-35178476	MS.gene001103:CDS	30.0%
AGTGGCTCATAATCTAAAAA+AGG	-	chr7.1:35180690-35180709	None:intergenic	30.0%
ATCAACAGTACTAATACCAA+CGG	-	chr7.1:35179767-35179786	None:intergenic	30.0%
ATGTCCTTATGATCAACAAA+AGG	-	chr7.1:35178993-35179012	None:intergenic	30.0%
ATTGGAGATAAACTCAAGAA+GGG	-	chr7.1:35180271-35180290	None:intergenic	30.0%
CAACATACTTAAAGCTTCAT+TGG	+	chr7.1:35178815-35178834	MS.gene001103:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	35177246	35180957	35177246	ID=MS.gene001103
chr7.1	mRNA	35177246	35180957	35177246	ID=MS.gene001103.t1;Parent=MS.gene001103
chr7.1	exon	35177246	35177638	35177246	ID=MS.gene001103.t1.exon1;Parent=MS.gene001103.t1
chr7.1	CDS	35177246	35177638	35177246	ID=cds.MS.gene001103.t1;Parent=MS.gene001103.t1
chr7.1	exon	35177750	35177890	35177750	ID=MS.gene001103.t1.exon2;Parent=MS.gene001103.t1
chr7.1	CDS	35177750	35177890	35177750	ID=cds.MS.gene001103.t1;Parent=MS.gene001103.t1
chr7.1	exon	35177991	35178737	35177991	ID=MS.gene001103.t1.exon3;Parent=MS.gene001103.t1
chr7.1	CDS	35177991	35178737	35177991	ID=cds.MS.gene001103.t1;Parent=MS.gene001103.t1
chr7.1	exon	35178810	35178890	35178810	ID=MS.gene001103.t1.exon4;Parent=MS.gene001103.t1
chr7.1	CDS	35178810	35178890	35178810	ID=cds.MS.gene001103.t1;Parent=MS.gene001103.t1
chr7.1	exon	35178969	35179202	35178969	ID=MS.gene001103.t1.exon5;Parent=MS.gene001103.t1
chr7.1	CDS	35178969	35179202	35178969	ID=cds.MS.gene001103.t1;Parent=MS.gene001103.t1
chr7.1	exon	35180793	35180957	35180793	ID=MS.gene001103.t1.exon6;Parent=MS.gene001103.t1
chr7.1	CDS	35180793	35180957	35180793	ID=cds.MS.gene001103.t1;Parent=MS.gene001103.t1

Gene Sequence

>MS.gene001103

ATGGCTTCCATTCAAAGTGAATCAGTTGAACAAGTTGATAATGTTCGTCTGAGAGTTTTGGTGGACAAAGAAAAGAACAAAGTTGTGTATGCTGAGGCTGGGAAGGTTTTCGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGGACTATTGCTAGACTCGGTGCTAAGGACTCAAATATTGAAGCAGTGAGATTTGGCAGCATTAGCTCATTGTATCAAAGTGTGTTAAATCTTGATCAACAATATTTGTGCTCACGTACATGCAAGGAAATGCTACTGCAACCAAGAAACTCCATGGAAGATTACTGCCGACAGCTGAAACTAAATATAGACGACACAGAACCCTTGCAGTACTTCGTGTGCGAGAATTGGGATTGTAGAAGAAAGGTAAGTGGATGCCTTTTGAGCTTTTTTAGGAACCAAAAATGCTATTGTGGAAAAGTAATGAACAGAGAAGTATTCCCAAAGTTTTTCAATATAGAAAATGGTTTTGTGAAGGAAAATGCTACTTTTATCATTTGTGATGATCTTTGTGTTTTGCCTAATGTTTTTGGAGCAAGTTTAAATCTACTTCAAAAGCTTGGAGTCGAGACTATTGATGCTATTGAGGAACAAGCTGTTGACATCAACAAGAAAGAGGCATGCTTTTTTTCGGCTTCTATATCATCTACATTACATATATCATCTTTGAATATTGATTATTTTTTCTAATTGAATATTTCTTATTCGATTTGTATAGGTAGTTGATCTTCTTAAGTTATCATTAATCTCAATGACCCCTTTGACCAATTTTATTTTACGAAAGAGCCAATCTGTTGATAATTTGAAACTAAGAAACAATATTGAGTTTCTGATTGGAGACCTACCATCTGATGAGGATAGACAAATGTCTGTGAAAGTGACATTAAGAAAATCGAATGAACAAATTCTGTTTGTCGAAGCAGGAGATGATTTTATTGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTAGGAGGAGTGTTGCATATGCTTCAAGGATTTTCGTCTTTAAGCAGCATTGGTAACTTGTACAAGAGCTTTTCTGATTTGAGTCCGGACATATATTTAATGTCAGAGGGACTCAAAGACAAACTATGTAAGCCTCTCAGTGCCCCACAATTTGAACTCAAGAACCAGATATTACCAATTGGTGCTGCTTTCTTACCTGTGAATTATTGTCATACTTACTATGATTACACAAGAATGAGGTATACCGACCTTACAAAAGAAATGGAGTATTCTAACTATAATAGAATTCATGAAGAAAAGTATGTACCATTTAAAGTGGTTGATCCCAAGTCTTCTAATGCAAAATCATCATATGCCAAAGGACCGTCAATGTATATGGTGGCAGACGACTTGTGTGTGAGTCCAATGTCGTCCATTTCTACTATGTCACTTCTAAAAAGATCAAAAGTCCCTCTATCTGATTTGGAGGAAAGAGTTATCAAAATTGGTGTCAAGGAGGTATGCACATGTTCATCTTGTAACTGTTCTCTATTTGCTAACACTACATTTACTTTTGGTTACATGTTACAGGGTCTCAACATACTTAAAGCTTCATTGGTATCAACATCTGCTTTGACAAATGGTCTCAACCAATTTATAAGAACTGTTAAGGTGGAGAAATGACTAAATATTTTACTTATCAAGTTTAGATTACCCTCTTCTCCATAATAGGGTTATTCTGTGCTAAAGATGTACCGACCTAATCAACTTCCTTTTGTTGATCATAAGGACATACAGGTCTCAACTTCTGCCTTTTCTGCTCCTGAAGACGGGGCTAGACCAGAATCTAACTTTGAGGCATTAGGCATAAATAATGCTTCAAGTTTGAGCGTTCAGCTTCCAGATTGTTCAAGTGGTACTCAAGTTTTGCAGGTTCCAAGAGCCACTTCGGTGGAAGAATTGCCCCTGCCCCCTAAAATACTGGTATCACTATTTTTTATTTACTTACATCTTTGTTGATATGTTTATTGCTGAACATAATTCTCTTTTTGATAGAGTAACACATAAATATTGCAAAAACGTATAGTTTGTGACTCGATACATAATACACCAATACATGGATATATGTCAAAGTCCTGCTGACTTTTTGCTTCCCAAACTATTTTTCATTTCTGTCATGGATTTTTACTTTCTTTGTGTTTTGTGATTAGGCGTGTCTTCATGTTTTACATGCATCGGTGTTCAACACTTGTAAGACACAAGTCCGACAGTTCAAACATAGTCTCAATTTTTTCTTCTTTACTTCACACTTTATATATTCTTTAGACACGTGTCTCTATGAGATTTAACGATGTGTAGAAGCAACAATACTATGAGATTTAAAGATGTATAGAGGCAACTGTACTATGAGATTTAAAGATGTACAAAAGCATCGATGAACACTAACCAAGGTTAAAAACAATTTAAATACATGTGTATAATTTGATTATCAATACAAGTAGTTTTGGTATAATGTTTGTATTTTATTTGGTGTCAGTGTTGTTACCGTTGGTATTAGTACTGTTGATATGTCAGTATCTATATCTGCTTCCGACTCTATGCTTCAAAAGTTGTTGTACATACCTATCTCTTTTTGGGAGGGGAAGATAACACTGGTCTATTCAATTCAGGAGAAAGAGAACAAGACTCCTGCATTGGCTTTGCGAAGGTCAACTAGGAAACGCAAAGCTAGCGGTCATGCTTGATGAGGCACAATATCCAAAAACATGTAACAATCGGTTCCTTGTTATTCCTTTGATTAAGTACCTCTCTAAGAGTGTGTTGTATTAATGTTTGCAAAAAAAATTTGGTATGTTAAAGATTAGACTTCTGTGATATGTGAAGATTCGATATGGTAGCCAATGGCCTCAATCATCCAGCTTAATTTTGATGTTCAAAATTTACTGTTATAGCAATCATGCAGGTATGGTCGGTGGAATATTTGTAATATGAGCAAACTCGGTTTTGATTTCTGCATAATTATGGTGCAGCTTAGATTTTTGACTGTTTCCCTTCTTGAGTTTATCTCCAATTGGGAGGATAATTAATTTCTATAAACATATTCTCTTATTTGATAAACTAAAACACTGAAATTTTTAGCTACGATACAAAGTGAATATTAATTAGTCATATATCTAAAACAATAAGACTTGTTTCTTCTTTATTTGATAAACTAAAACCTGTTGAATACTTCAGTTTTTTGTTTTTTATTTAGATGAACAGAGGTTTTGTGGAATAATTTGTCAAACTCAAACCAATTGGGTACTGTTGTACGATAAAAATTGAAATGTCGATGACCTTTGTTAGTAATGTGGAATATAAGTATTTTTTTAACTCGAGAAAAACTTATAGCATTTCATTCAATATAAGATTCTCAATACAAATTTGGATGTAATCATAACATACAACACTATTATGAAAACGGGATGCCTTTTTTAGATTATGAGCCACTCGATTAACTTGCCTCTTAATACAACTCCCACTTATTAAATATAACGTCAAACTCGTTATGATAACATCTTGTTTTGTTGACAGCCTCCACTGCTTGCAAGCAGGTTCAATGACAACATTGTTAAAATCATGTTCCTGCAGCCATACCAGCAGGCCATAAGCTTCTGCAGCTCATGGATTCCGCTTGTAATGAGCAAGCAGTTCGTGGACCAATTCACTGCCATACGCCCATACCCGAAGCAGTTCTGA

Protein sequence

>MS.gene001103.t1

MASIQSESVEQVDNVRLRVLVDKEKNKVVYAEAGKVFVDALFSFLTLPLGTIARLGAKDSNIEAVRFGSISSLYQSVLNLDQQYLCSRTCKEMLLQPRNSMEDYCRQLKLNIDDTEPLQYFVCENWDCRRKENATFIICDDLCVLPNVFGASLNLLQKLGVETIDAIEEQAVDINKKEVVDLLKLSLISMTPLTNFILRKSQSVDNLKLRNNIEFLIGDLPSDEDRQMSVKVTLRKSNEQILFVEAGDDFIDFVFSFLTFPLGGVLHMLQGFSSLSSIGNLYKSFSDLSPDIYLMSEGLKDKLCKPLSAPQFELKNQILPIGAAFLPVNYCHTYYDYTRMRYTDLTKEMEYSNYNRIHEEKYVPFKVVDPKSSNAKSSYAKGPSMYMVADDLCVSPMSSISTMSLLKRSKVPLSDLEERVIKIGVKEGLNILKASLVSTSALTNGLNQFIRTVKMYRPNQLPFVDHKDIQVSTSAFSAPEDGARPESNFEALGINNASSLSVQLPDCSSGTQVLQVPRATSVEELPLPPKILPPLLASRFNDNIVKIMFLQPYQQAISFCSSWIPLVMSKQFVDQFTAIRPYPKQF