AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037652.t1 MTR_4g019340 85.336 491 38 5 8 488 37 503 0.0 820
MS.gene037652.t1 MTR_4g017830 75.665 526 126 2 3 527 6 530 0.0 790
MS.gene037652.t1 MTR_4g017440 67.470 498 149 5 3 494 8 498 0.0 651
MS.gene037652.t1 MTR_4g017410 64.740 519 145 7 1 507 1 493 0.0 636
MS.gene037652.t1 MTR_4g017550 65.739 467 145 7 36 498 18 473 0.0 592
MS.gene037652.t1 MTR_4g017550 29.150 247 126 10 12 236 250 469 1.61e-11 67.0
MS.gene037652.t1 MTR_4g017470 61.969 518 147 7 1 507 1 479 0.0 591
MS.gene037652.t1 MTR_4g017610 59.756 492 173 7 4 494 8 475 0.0 563
MS.gene037652.t1 MTR_4g019310 42.690 513 248 15 1 494 1 486 6.33e-117 354
MS.gene037652.t1 MTR_7g066260 35.359 543 273 17 3 527 9 491 4.79e-83 266
MS.gene037652.t1 MTR_7g066340 34.630 540 270 14 2 527 5 475 2.02e-82 265
MS.gene037652.t1 MTR_7g066570 35.397 517 277 16 3 502 8 484 1.99e-78 257
MS.gene037652.t1 MTR_7g066350 34.231 520 260 14 1 501 1 457 7.32e-76 247
MS.gene037652.t1 MTR_7g066350 29.921 254 143 8 265 507 9 238 3.04e-17 84.7
MS.gene037652.t1 MTR_7g058710 33.143 525 288 15 1 504 1 483 1.52e-75 247
MS.gene037652.t1 MTR_7g066410 34.146 533 285 17 5 498 7 512 1.10e-74 245
MS.gene037652.t1 MTR_7g066410 25.600 250 155 7 1 236 276 508 8.62e-11 64.7
MS.gene037652.t1 MTR_1g041315 33.865 502 248 17 5 482 10 451 2.31e-69 231
MS.gene037652.t1 MTR_7g066400 33.918 513 249 15 2 501 5 440 9.93e-69 228
MS.gene037652.t1 MTR_7g066430 35.248 505 287 14 10 498 5 485 1.12e-68 229
MS.gene037652.t1 MTR_7g012680 33.786 515 253 15 3 502 8 449 3.41e-68 226
MS.gene037652.t1 MTR_7g012680 27.711 249 132 8 253 492 2 211 3.86e-12 68.9
MS.gene037652.t1 MTR_7g062280 33.843 523 276 18 10 504 11 491 2.55e-64 218
MS.gene037652.t1 MTR_7g066360 34.011 541 273 17 3 528 8 479 3.05e-64 217
MS.gene037652.t1 MTR_7g063880 33.136 507 275 17 10 503 12 467 3.23e-64 216
MS.gene037652.t1 MTR_7g063880 29.644 253 114 10 265 491 11 225 2.93e-14 75.5
MS.gene037652.t1 MTR_7g063660 33.140 516 294 17 1 504 1 477 1.96e-62 212
MS.gene037652.t1 MTR_7g063900 33.984 512 291 16 2 498 3 482 1.71e-61 210
MS.gene037652.t1 MTR_7g066580 32.200 500 264 15 15 498 1 441 3.78e-61 208
MS.gene037652.t1 MTR_7g066580 25.100 251 155 6 2 236 208 441 1.57e-11 67.0
MS.gene037652.t1 MTR_7g062300 32.812 512 282 15 3 497 6 472 1.34e-60 207
MS.gene037652.t1 MTR_7g063840 31.969 513 295 17 3 504 4 473 8.80e-59 202
MS.gene037652.t1 MTR_7g066290 36.559 372 199 11 3 356 9 361 2.21e-56 195
MS.gene037652.t1 MTR_7g063820 33.397 524 289 19 1 504 1 484 6.08e-54 189
MS.gene037652.t1 MTR_7g063920 30.060 499 271 13 10 504 12 436 2.82e-52 184
MS.gene037652.t1 MTR_4g019240 77.586 116 23 2 4 118 8 121 2.86e-52 176
MS.gene037652.t1 MTR_4g019240 87.324 71 9 0 456 526 112 182 1.19e-29 115
MS.gene037652.t1 MTR_7g063890 31.073 531 296 18 1 505 19 505 4.68e-52 185
MS.gene037652.t1 MTR_7g063830 30.784 523 266 18 1 505 1 445 9.44e-51 180
MS.gene037652.t1 MTR_2g029400 29.960 494 242 13 1 486 6 403 3.67e-50 177
MS.gene037652.t1 MTR_7g063670 30.333 511 279 16 6 504 12 457 1.71e-46 169
MS.gene037652.t1 MTR_3g065200 28.921 491 262 16 10 492 4 415 3.02e-45 165
MS.gene037652.t1 MTR_3g007740 29.528 508 282 18 1 498 1 442 2.16e-42 157
MS.gene037652.t1 MTR_7g058700 33.240 358 157 14 21 347 531 837 5.17e-41 158
MS.gene037652.t1 MTR_7g066480 36.517 356 183 14 10 348 17 346 5.26e-41 153
MS.gene037652.t1 MTR_7g066480 36.893 103 54 1 407 498 319 421 6.22e-11 65.1
MS.gene037652.t1 MTR_7g066280 27.887 459 258 12 95 527 1 412 2.00e-40 151
MS.gene037652.t1 MTR_7g066490 33.623 345 194 11 10 348 17 332 3.45e-36 139
MS.gene037652.t1 MTR_7g066310 35.338 266 116 5 265 527 193 405 2.19e-35 137
MS.gene037652.t1 MTR_7g066310 38.255 149 74 5 10 149 8 147 8.66e-23 100
MS.gene037652.t1 MTR_7g066310 34.545 110 64 3 265 367 7 115 4.05e-11 65.5
MS.gene037652.t1 MTR_7g066680 31.269 323 160 9 213 494 33 334 2.10e-27 113
MS.gene037652.t1 MTR_1g014060 33.040 227 128 7 18 236 9 219 9.21e-25 106
MS.gene037652.t1 MTR_1g014060 35.266 207 99 5 295 498 210 384 9.19e-21 94.7
MS.gene037652.t1 MTR_4g019350 52.000 100 37 2 323 422 1 89 4.88e-24 96.7
MS.gene037652.t1 MTR_7g063720 30.488 246 135 5 261 503 19 231 1.96e-22 96.7
MS.gene037652.t1 MTR_7g062270 36.869 198 99 10 1 189 1 181 1.66e-21 97.1
MS.gene037652.t1 MTR_8g445860 28.571 252 124 6 265 492 13 232 3.02e-21 93.2
MS.gene037652.t1 MTR_8g445860 31.780 236 141 7 10 238 14 236 1.30e-19 88.6
MS.gene037652.t1 MTR_7g100420 30.793 328 195 10 170 494 95 393 1.76e-20 94.0
MS.gene037652.t1 MTR_1g115440 30.242 248 148 8 2 238 4 237 2.01e-20 90.9
MS.gene037652.t1 MTR_1g115440 30.705 241 136 8 265 492 11 233 3.28e-19 87.4
MS.gene037652.t1 MTR_7g063850 29.719 249 144 7 263 504 64 288 1.15e-19 90.1
MS.gene037652.t1 MTR_8g023240 21.565 524 302 16 9 496 37 487 2.43e-19 91.7
MS.gene037652.t1 MTR_0150s0010 30.508 236 143 5 265 492 10 232 8.36e-19 86.3
MS.gene037652.t1 MTR_0150s0010 29.032 248 151 7 2 238 3 236 1.27e-16 79.7
MS.gene037652.t1 MTR_7g066390 44.118 102 54 2 426 527 50 148 9.57e-14 69.3
MS.gene037652.t1 MTR_0150s0030 35.294 102 57 2 265 363 8 103 1.08e-13 70.5
MS.gene037652.t1 MTR_8g445910 36.275 102 56 2 265 363 8 103 1.50e-13 71.2
MS.gene037652.t1 MTR_1g115455 33.824 136 74 3 1 132 1 124 2.53e-13 70.1
MS.gene037652.t1 MTR_1g115455 37.975 79 47 1 265 341 9 87 4.97e-11 63.2
MS.gene037652.t1 MTR_1g115450 40.506 79 45 1 265 341 7 85 9.42e-13 66.2
MS.gene037652.t1 MTR_8g044880 36.275 102 56 2 265 363 8 103 9.47e-13 69.3
MS.gene037652.t1 MTR_6g006800 56.897 58 15 2 1 56 1 50 6.23e-12 61.6
MS.gene037652.t1 MTR_8g445920 40.909 66 39 0 265 330 10 75 2.29e-11 61.2
MS.gene037652.t1 MTR_8g044890 40.909 66 39 0 265 330 10 75 2.29e-11 61.2
MS.gene037652.t1 MTR_1g115435 25.101 247 143 8 1 242 1 210 2.36e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037652.t1 AT5G01120 31.492 543 320 15 1 527 1 507 1.30e-62 213
MS.gene037652.t1 AT5G43240 32.685 514 283 16 10 494 10 489 2.83e-59 204
MS.gene037652.t1 AT5G43240 32.685 514 283 16 10 494 10 489 2.83e-59 204
MS.gene037652.t1 AT5G43240 32.685 514 283 16 10 494 10 489 2.83e-59 204
MS.gene037652.t1 AT3G09140 30.784 536 282 15 1 494 1 489 5.74e-59 203
MS.gene037652.t1 AT5G01130 31.855 496 277 15 3 495 4 441 6.11e-59 202
MS.gene037652.t1 AT3G09140 30.496 564 275 18 1 494 1 517 8.13e-54 190
MS.gene037652.t1 AT5G01150 30.586 546 309 17 3 527 4 500 5.60e-53 187
MS.gene037652.t1 AT5G01140 31.273 534 293 19 3 527 4 472 1.62e-52 186
MS.gene037652.t1 AT3G09110 35.417 336 189 10 1 326 1 318 1.05e-46 166
MS.gene037652.t1 AT3G09120 34.234 333 185 11 1 319 1 313 5.59e-44 158
MS.gene037652.t1 AT3G09120 29.958 237 144 9 265 492 6 229 1.11e-14 75.5
MS.gene037652.t1 AT5G37320 29.447 506 296 16 16 501 18 482 5.95e-43 160
MS.gene037652.t1 AT5G43240 29.945 364 208 10 153 494 7 345 2.81e-29 119

Find 107 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGATTCACATGGATTCTT+TGG 0.216390 4.3:+79562927 None:intergenic
GAGTATAATTATAGTTATTA+TGG 0.232690 4.3:-79559869 MS.gene037652:CDS
TGGCGGGTTGTCTTTGTTCT+TGG 0.234472 4.3:+79560273 None:intergenic
TTGCACCCGCGACATTAAAA+TGG 0.282031 4.3:-79560218 MS.gene037652:CDS
CAGGGGAATGAGGTACAAAA+TGG 0.288766 4.3:-79562750 MS.gene037652:CDS
AAAGATTGTGCCAAGTTCTT+TGG 0.297409 4.3:-79562679 MS.gene037652:CDS
TAATAAACAGCCTAAGGATT+TGG 0.303916 4.3:-79562784 MS.gene037652:CDS
ATAACTCAGTCTTCTAGTTT+AGG 0.304871 4.3:+79558830 None:intergenic
TTCTGATTTGACTCAATTAC+AGG 0.305846 4.3:-79562622 MS.gene037652:CDS
CCACTCACTACATATTATTA+TGG 0.320058 4.3:-79559911 MS.gene037652:CDS
ATGCAGATATTGGTGGAATC+AGG 0.322458 4.3:-79562648 MS.gene037652:CDS
CCCTCACTCCAAACGATGTT+TGG 0.334877 4.3:-79562983 MS.gene037652:CDS
AGGGTCCATTGTAAAGGTTT+TGG 0.343635 4.3:-79560095 MS.gene037652:CDS
GAGAGTGTCAACAAAGTCTT+TGG 0.349073 4.3:+79563136 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.351633 4.3:-79560115 MS.gene037652:CDS
CACACACAACTTTGGAAAAC+AGG 0.361346 4.3:-79562595 MS.gene037652:CDS
ACTGCTGATGCAAACTGGTT+TGG 0.367245 4.3:+79560253 None:intergenic
AGCAAAAGCCTTGACTGAAA+TGG 0.377248 4.3:-79559780 MS.gene037652:CDS
GCTTCCTTACAATACCATTA+GGG 0.381396 4.3:-79560114 MS.gene037652:CDS
CATCGTTGTTTGTGGTTAAG+AGG 0.384127 4.3:+79563075 None:intergenic
CTTTGACTGCTGATGCAAAC+TGG 0.388699 4.3:+79560248 None:intergenic
GGTGACTTCCATGCAGATAT+TGG 0.389389 4.3:-79562658 MS.gene037652:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4.3:+79559947 None:intergenic
CTATAATTATACTCTTGCTT+TGG 0.402657 4.3:+79559878 None:intergenic
GGATTTGGATTCTGAGGGTC+AGG 0.417104 4.3:-79562769 MS.gene037652:CDS
CAGAGGCTCATGAGAGGTTA+AGG 0.420057 4.3:+79560321 None:intergenic
GTGAGCATTTGTTTGCATAC+AGG 0.422335 4.3:+79562954 None:intergenic
ATCCTTAGGCTGTTTATTAG+TGG 0.429803 4.3:+79562788 None:intergenic
AACGGTAGAATTAAAGATAG+AGG 0.436841 4.3:-79559840 MS.gene037652:CDS
GGAGTGTTCCAAACATCGTT+TGG 0.436865 4.3:+79562975 None:intergenic
CAGGAAGTCACACACAACTT+TGG 0.438918 4.3:-79562603 MS.gene037652:CDS
CAGAATCTTGATTGTACTTG+TGG 0.438965 4.3:-79562816 MS.gene037652:CDS
ACTAGTTTGAACACACTTTG+AGG 0.444744 4.3:+79558877 None:intergenic
TCCTTAGGCTGTTTATTAGT+GGG 0.446992 4.3:+79562789 None:intergenic
ACCATTAGGGTCCATTGTAA+AGG 0.460196 4.3:-79560101 MS.gene037652:CDS
CGCTCCATGTTACTCAATCC+TGG 0.462371 4.3:-79559992 MS.gene037652:CDS
CCAAACATCGTTTGGAGTGA+GGG 0.462496 4.3:+79562983 None:intergenic
ACCTTTACAATGGACCCTAA+TGG 0.477568 4.3:+79560100 None:intergenic
AGGGGAATGAGGTACAAAAT+GGG 0.479970 4.3:-79562749 MS.gene037652:CDS
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4.3:+79559942 None:intergenic
GCTGATGCAAACTGGTTTGG+CGG 0.490283 4.3:+79560256 None:intergenic
CAAAGTGTGTTCAAACTAGT+AGG 0.500953 4.3:-79558874 MS.gene037652:CDS
ATGGAAGTCACCAAAGAACT+TGG 0.501440 4.3:+79562669 None:intergenic
GCCTAAGGATTTGGATTCTG+AGG 0.505495 4.3:-79562775 MS.gene037652:CDS
GTACAAGAGTGTAGAGAGCT+TGG 0.505497 4.3:-79560038 MS.gene037652:CDS
TCTTGGGTCCATTTCAGTCA+AGG 0.507464 4.3:+79559772 None:intergenic
TGGTGGCGAGTGGAAGAGAA+AGG 0.511396 4.3:+79563105 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.518635 4.3:-79559905 MS.gene037652:CDS
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4.3:+79560304 None:intergenic
CCCTCAGAATCCAAATCCTT+AGG 0.521369 4.3:+79562774 None:intergenic
TGAATATTGATGACACTGAA+TGG 0.521738 4.3:-79562887 MS.gene037652:CDS
TTAATTCTTTCAAATATGAA+AGG 0.523699 4.3:+79559645 None:intergenic
TGGACCCTAATGGTATTGTA+AGG 0.526033 4.3:+79560110 None:intergenic
TTCTGAGGGTCAGGGGAATG+AGG 0.528780 4.3:-79562760 MS.gene037652:CDS
AGGCAATAATTAGCAGAAAG+TGG 0.533853 4.3:+79559665 None:intergenic
TGTGGTTAAGAGGCGAATGA+TGG 0.534640 4.3:+79563085 None:intergenic
CCTTGTTGATCTTGAAGTGA+AGG 0.535507 4.3:-79559615 MS.gene037652:CDS
TGCAGATATTGGTGGAATCA+GGG 0.535787 4.3:-79562647 MS.gene037652:CDS
TCAAAATTTACACTGACTAG+TGG 0.539589 4.3:-79558944 MS.gene037652:CDS
ACCCACTAATAAACAGCCTA+AGG 0.539763 4.3:-79562790 MS.gene037652:CDS
CTGATGCAAACTGGTTTGGC+GGG 0.543289 4.3:+79560257 None:intergenic
CTTCAAGATCAACAAGGGGA+AGG 0.544062 4.3:+79559621 None:intergenic
ATTTACACTGACTAGTGGAC+TGG 0.547720 4.3:-79558939 MS.gene037652:CDS
TAGAGAGCTTGGACTCTTCG+TGG 0.547747 4.3:-79560027 MS.gene037652:CDS
ATTTGGATTCTGAGGGTCAG+GGG 0.552267 4.3:-79562767 MS.gene037652:CDS
TAGTTATTATGGTTATCAAA+CGG 0.564215 4.3:-79559858 MS.gene037652:CDS
TCCAAACATCGTTTGGAGTG+AGG 0.570799 4.3:+79562982 None:intergenic
GGAGTGATTTCTAAGTCGCA+TGG 0.571812 4.3:-79559815 MS.gene037652:CDS
GATTTGGATTCTGAGGGTCA+GGG 0.578112 4.3:-79562768 MS.gene037652:CDS
GTAGAATTAAAGATAGAGGG+AGG 0.580072 4.3:-79559836 MS.gene037652:CDS
ACGGTAGAATTAAAGATAGA+GGG 0.581849 4.3:-79559839 MS.gene037652:CDS
ACCATCCAAAACCTTTACAA+TGG 0.583435 4.3:+79560090 None:intergenic
TCTCCTACACTATATAATGC+CGG 0.585136 4.3:+79559704 None:intergenic
TCAGAATCATCATCATTCCT+CGG 0.586673 4.3:-79563038 MS.gene037652:CDS
GAAGTCAACAAAGTTTCCAC+TGG 0.587458 4.3:+79560144 None:intergenic
CCTAAGGATTTGGATTCTGA+GGG 0.593985 4.3:-79562774 MS.gene037652:CDS
TCAAAGTGTGGTGAGACACC+AGG 0.595184 4.3:+79559974 None:intergenic
GACTTCCATGCAGATATTGG+TGG 0.595400 4.3:-79562655 MS.gene037652:CDS
GAGGAATGATGATGATTCTG+AGG 0.600974 4.3:+79563040 None:intergenic
CCTTCACTTCAAGATCAACA+AGG 0.610416 4.3:+79559615 None:intergenic
AGGTTAAGGTGTACTTGAGG+AGG 0.616375 4.3:+79560335 None:intergenic
ATGTACATGAGGAATGTTGA+GGG 0.622021 4.3:+79559937 None:intergenic
AGGCGAATGATGGTGGCGAG+TGG 0.622630 4.3:+79563095 None:intergenic
GACACCAGGATTGAGTAACA+TGG 0.632796 4.3:+79559988 None:intergenic
GTGAGTGGTGGATGTACATG+AGG 0.635076 4.3:+79559926 None:intergenic
TGATTCCACCAATATCTGCA+TGG 0.636872 4.3:+79562650 None:intergenic
GATAAGCATTGGTGAAGCTG+AGG 0.638424 4.3:-79559591 MS.gene037652:intron
GGGTTTGTACGCTTTCGTAG+AGG 0.639786 4.3:+79563003 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.648287 4.3:+79558963 None:intergenic
GGTGGGATTTGTGAAGAGAC+CGG 0.651602 4.3:-79559723 MS.gene037652:CDS
CTTCACTTCAAGATCAACAA+GGG 0.654366 4.3:+79559616 None:intergenic
GAAGTGAAGGTGATAAGCAT+TGG 0.654807 4.3:-79559602 MS.gene037652:CDS
TAATAATATGTAGTGAGTGG+TGG 0.656097 4.3:+79559914 None:intergenic
AGACCGGCATTATATAGTGT+AGG 0.657855 4.3:-79559707 MS.gene037652:CDS
TTCTTGCATAGTGATTCACA+TGG 0.666554 4.3:+79562918 None:intergenic
GAGAGGTTAAGGTGTACTTG+AGG 0.667782 4.3:+79560332 None:intergenic
ATAATCTGTGCAGAAGCCAG+TGG 0.673897 4.3:-79560160 MS.gene037652:CDS
ATTTGTCAGAGGCTCATGAG+AGG 0.675408 4.3:+79560315 None:intergenic
TTCACTTCAAGATCAACAAG+GGG 0.676098 4.3:+79559617 None:intergenic
GATGTACATGAGGAATGTTG+AGG 0.679220 4.3:+79559936 None:intergenic
GGGGAATGAGGTACAAAATG+GGG 0.680164 4.3:-79562748 MS.gene037652:CDS
ACACAACTTTGGAAAACAGG+AGG 0.691626 4.3:-79562592 MS.gene037652:intron
GGTTAAGAGGCGAATGATGG+TGG 0.700313 4.3:+79563088 None:intergenic
TGGTTTGGACAATCAAAGTG+TGG 0.715135 4.3:+79559962 None:intergenic
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4.3:+79558966 None:intergenic
CCATAATAATATGTAGTGAG+TGG 0.727149 4.3:+79559911 None:intergenic
TGTACATGAGGAATGTTGAG+GGG 0.757600 4.3:+79559938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAGAATGTTATAT+TGG - chr4.3:79561630-79561649 MS.gene037652:intron 10.0%
!!! CAATTTATTTTTTTAAAACT+TGG + chr4.3:79559878-79559897 None:intergenic 10.0%
!!! TCATTTTCTTAAAATTTTAT+CGG - chr4.3:79559618-79559637 MS.gene037652:CDS 10.0%
!!! TTTTAAAAGAATGTTATATT+GGG - chr4.3:79561631-79561650 MS.gene037652:intron 10.0%
!! GAAATAATATGTTTAGATAT+AGG - chr4.3:79562853-79562872 MS.gene037652:CDS 15.0%
!! GAGTATAATTATAGTTATTA+TGG - chr4.3:79562187-79562206 MS.gene037652:intron 15.0%
!! TCAAAATAACTAATGAATAA+TGG - chr4.3:79560230-79560249 MS.gene037652:CDS 15.0%
!! TTAATAAATTATTGGACTTA+TGG + chr4.3:79562676-79562695 None:intergenic 15.0%
!! TTAATTCTTTCAAATATGAA+AGG + chr4.3:79562414-79562433 None:intergenic 15.0%
!! TTTAAAAGAATGTTATATTG+GGG - chr4.3:79561632-79561651 MS.gene037652:intron 15.0%
!!! ACATCTTTTTTTAATTTGTT+GGG + chr4.3:79562313-79562332 None:intergenic 15.0%
!!! TTTATAACTTTCGTTTTTTA+GGG - chr4.3:79560398-79560417 MS.gene037652:intron 15.0%
!! AAACGAAAGTTATAAAGTTA+AGG + chr4.3:79560394-79560413 None:intergenic 20.0%
!! AAATTAAAAAAAGATGTGGT+GGG - chr4.3:79562316-79562335 MS.gene037652:intron 20.0%
!! AATATGTTTAGATATAGGTT+GGG - chr4.3:79562858-79562877 MS.gene037652:CDS 20.0%
!! AATTCAATACCTCAAATTAT+AGG + chr4.3:79560307-79560326 None:intergenic 20.0%
!! ATACAAGATATTAAACCAAA+CGG + chr4.3:79561577-79561596 None:intergenic 20.0%
!! ATAGAGTACAATAGATTTAA+GGG + chr4.3:79560688-79560707 None:intergenic 20.0%
!! ATTAGTTCGATAACTAAATA+AGG + chr4.3:79560882-79560901 None:intergenic 20.0%
!! CAACAAATTAAAAAAAGATG+TGG - chr4.3:79562312-79562331 MS.gene037652:intron 20.0%
!! CAGAATAATTAGTGTAAAAA+TGG + chr4.3:79560986-79561005 None:intergenic 20.0%
!! TAATATGTTTAGATATAGGT+TGG - chr4.3:79562857-79562876 MS.gene037652:CDS 20.0%
!! TAGTTATTATGGTTATCAAA+CGG - chr4.3:79562198-79562217 MS.gene037652:intron 20.0%
!! TAGTTGTTGTACTTAAATTA+CGG - chr4.3:79561170-79561189 MS.gene037652:intron 20.0%
!! TTAGACAACAAATAAACAAA+AGG + chr4.3:79562530-79562549 None:intergenic 20.0%
!! TTAGTTCGATAACTAAATAA+GGG + chr4.3:79560881-79560900 None:intergenic 20.0%
!!! ATCTTTTTTTAATTTGTTGG+GGG + chr4.3:79562311-79562330 None:intergenic 20.0%
!!! CACAGTTTCAAATATTTTTT+CGG + chr4.3:79559916-79559935 None:intergenic 20.0%
!!! CACATCTTTTTTTAATTTGT+TGG + chr4.3:79562314-79562333 None:intergenic 20.0%
!!! CATCTTTTTTTAATTTGTTG+GGG + chr4.3:79562312-79562331 None:intergenic 20.0%
!!! CTTTATAACTTTCGTTTTTT+AGG - chr4.3:79560397-79560416 MS.gene037652:intron 20.0%
!!! TATAATTTGAGGTATTGAAT+TGG - chr4.3:79560306-79560325 MS.gene037652:CDS 20.0%
!!! TTGTTATTGTAGTAAAATGA+GGG - chr4.3:79559983-79560002 MS.gene037652:CDS 20.0%
!!! TTTTTTTAAAACTTGGTATC+CGG + chr4.3:79559871-79559890 None:intergenic 20.0%
! AAACATTCACAATGTTATGA+TGG - chr4.3:79561134-79561153 MS.gene037652:intron 25.0%
! AAATTATTGGACTTATGGAA+AGG + chr4.3:79562671-79562690 None:intergenic 25.0%
! AATAGAAAGTGATAAACTCT+AGG + chr4.3:79560598-79560617 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG - chr4.3:79562151-79562170 MS.gene037652:intron 25.0%
! AGAAAAAGATTTAACCTTCA+AGG - chr4.3:79560783-79560802 MS.gene037652:intron 25.0%
! CAAATTAAAAAAAGATGTGG+TGG - chr4.3:79562315-79562334 MS.gene037652:intron 25.0%
! CATTTGTATGTATGTTATCT+TGG - chr4.3:79561656-79561675 MS.gene037652:intron 25.0%
! CTATAATTATACTCTTGCTT+TGG + chr4.3:79562181-79562200 None:intergenic 25.0%
! GAAAAAGATTTAACCTTCAA+GGG - chr4.3:79560784-79560803 MS.gene037652:intron 25.0%
! GATAGAGTACAATAGATTTA+AGG + chr4.3:79560689-79560708 None:intergenic 25.0%
! TAACAATGTCCTATAATTTG+AGG - chr4.3:79560295-79560314 MS.gene037652:CDS 25.0%
! TAAGAATAGAAAGGAAAGTA+AGG - chr4.3:79560447-79560466 MS.gene037652:intron 25.0%
! TAATTTGAGTGAAGAGTTAA+AGG - chr4.3:79561423-79561442 MS.gene037652:intron 25.0%
! TACAAACATGTTATGAAACA+CGG + chr4.3:79559679-79559698 None:intergenic 25.0%
! TAGTGTACCATAAATGAAAA+GGG - chr4.3:79561096-79561115 MS.gene037652:intron 25.0%
! TATAAAAAATGTAGTGTACC+TGG + chr4.3:79562778-79562797 None:intergenic 25.0%
! TATCAATTAGGAACAATTTG+AGG + chr4.3:79560928-79560947 None:intergenic 25.0%
! TTAGTGTACCATAAATGAAA+AGG - chr4.3:79561095-79561114 MS.gene037652:intron 25.0%
! TTCAAAATTGTATTTGTCAG+AGG + chr4.3:79561755-79561774 None:intergenic 25.0%
!! ATGTTTTCCCTTTTCATTTA+TGG + chr4.3:79561106-79561125 None:intergenic 25.0%
!! CTCATTTTACTACAATAACA+AGG + chr4.3:79559984-79560003 None:intergenic 25.0%
!! GAAGGTTAAATCTTTTTCTT+TGG + chr4.3:79560782-79560801 None:intergenic 25.0%
!! TGAATCATTGTTCTAAATTG+TGG - chr4.3:79559934-79559953 MS.gene037652:CDS 25.0%
!!! CTTGTTATTGTAGTAAAATG+AGG - chr4.3:79559982-79560001 MS.gene037652:CDS 25.0%
!!! TTTTTAGGGTAGTTTGTATA+TGG - chr4.3:79560412-79560431 MS.gene037652:intron 25.0%
AACCTTAAAGGGAATAAGTT+GGG - chr4.3:79560711-79560730 MS.gene037652:intron 30.0%
AACGGTAGAATTAAAGATAG+AGG - chr4.3:79562216-79562235 MS.gene037652:intron 30.0%
AATGTAGTAGTAGGGAATTA+GGG - chr4.3:79560520-79560539 MS.gene037652:intron 30.0%
ACCATCTGTTAAGAATAGAA+AGG - chr4.3:79560438-79560457 MS.gene037652:intron 30.0%
ACGGTAGAATTAAAGATAGA+GGG - chr4.3:79562217-79562236 MS.gene037652:intron 30.0%
AGAAACAGAATGTAGTAGTA+GGG - chr4.3:79560512-79560531 MS.gene037652:intron 30.0%
ATGTTTGTAGAGTAAGAACT+TGG - chr4.3:79559690-79559709 MS.gene037652:CDS 30.0%
CCACTCACTACATATTATTA+TGG - chr4.3:79562145-79562164 MS.gene037652:intron 30.0%
CCATAATAATATGTAGTGAG+TGG + chr4.3:79562148-79562167 None:intergenic 30.0%
CCTAATTGATATCATAAGCT+GGG - chr4.3:79560937-79560956 MS.gene037652:intron 30.0%
GGTACACTAATAACTTTATG+TGG + chr4.3:79561085-79561104 None:intergenic 30.0%
GTTAACTATGAGTATCAAAC+TGG - chr4.3:79560206-79560225 MS.gene037652:CDS 30.0%
TAATAAACAGCCTAAGGATT+TGG - chr4.3:79559272-79559291 MS.gene037652:intron 30.0%
TAATAATATGTAGTGAGTGG+TGG + chr4.3:79562145-79562164 None:intergenic 30.0%
TACTCTATCAGAACCTTAAA+GGG - chr4.3:79560700-79560719 MS.gene037652:intron 30.0%
TCACACACAAAAAACTTACT+TGG + chr4.3:79559195-79559214 None:intergenic 30.0%
TCCTAATTGATATCATAAGC+TGG - chr4.3:79560936-79560955 MS.gene037652:intron 30.0%
TCCTTTCTATTCTTAACAGA+TGG + chr4.3:79560442-79560461 None:intergenic 30.0%
TGCACAGATAAGTAAGAATT+GGG - chr4.3:79560546-79560565 MS.gene037652:intron 30.0%
TGTTATGATGGTTTACTTAG+TGG - chr4.3:79561146-79561165 MS.gene037652:intron 30.0%
TTCGAATGCTATACATATCT+TGG - chr4.3:79562972-79562991 MS.gene037652:CDS 30.0%
TTGCACAGATAAGTAAGAAT+TGG - chr4.3:79560545-79560564 MS.gene037652:intron 30.0%
! ACAAAATGGGGTTTTTGTTA+AGG - chr4.3:79559320-79559339 MS.gene037652:intron 30.0%
! ATTTTCAGTGGAATCGTTTT+TGG + chr4.3:79558856-79558875 None:intergenic 30.0%
! CTGTCAATTAAGATTTTCAG+TGG + chr4.3:79558868-79558887 None:intergenic 30.0%
! GGGTTTTTGTTAAGGAAAAT+GGG - chr4.3:79559328-79559347 MS.gene037652:intron 30.0%
! TCAAAATTTACACTGACTAG+TGG - chr4.3:79563112-79563131 MS.gene037652:CDS 30.0%
! TGAATATTGATGACACTGAA+TGG - chr4.3:79559169-79559188 MS.gene037652:intron 30.0%
! TGGAAGCATAAATAAAGATG+AGG + chr4.3:79561065-79561084 None:intergenic 30.0%
! TTCTGATTTGACTCAATTAC+AGG - chr4.3:79559434-79559453 MS.gene037652:intron 30.0%
! TTTTTGATCATCGTTGTTTG+TGG + chr4.3:79558992-79559011 None:intergenic 30.0%
!! AATTAGTTTGTCAGTTAGAG+GGG + chr4.3:79560905-79560924 None:intergenic 30.0%
!! CAGTGTAAATTTTGATGTCA+AGG + chr4.3:79563107-79563126 None:intergenic 30.0%
!! GAATTAGTTTGTCAGTTAGA+GGG + chr4.3:79560906-79560925 None:intergenic 30.0%
AAAGATTGTGCCAAGTTCTT+TGG - chr4.3:79559377-79559396 MS.gene037652:intron 35.0%
AAATCAAGAGGTAAGAATCC+TGG + chr4.3:79563051-79563070 None:intergenic 35.0%
AAATTAGTAGGTCCTTGAAC+CGG - chr4.3:79559849-79559868 MS.gene037652:CDS 35.0%
AAGACAACTGTGTCTTTAGT+TGG + chr4.3:79562755-79562774 None:intergenic 35.0%
AAGTTGGGTAAAAGAGAAGA+TGG - chr4.3:79560726-79560745 MS.gene037652:intron 35.0%
ACACTGTTATTGTTACCGTT+TGG - chr4.3:79561559-79561578 MS.gene037652:intron 35.0%
ACCATCCAAAACCTTTACAA+TGG + chr4.3:79561969-79561988 None:intergenic 35.0%
AGATGAGGTGAATGAAGATA+AGG + chr4.3:79561050-79561069 None:intergenic 35.0%
AGCTTCCTTACAATACCATT+AGG - chr4.3:79561941-79561960 MS.gene037652:intron 35.0%
AGGCAATAATTAGCAGAAAG+TGG + chr4.3:79562394-79562413 None:intergenic 35.0%
AGTGATTCACATGGATTCTT+TGG + chr4.3:79559132-79559151 None:intergenic 35.0%
ATATGCTTCATAGACCACAT+GGG + chr4.3:79562577-79562596 None:intergenic 35.0%
ATCCTTAGGCTGTTTATTAG+TGG + chr4.3:79559271-79559290 None:intergenic 35.0%
ATGTACATGAGGAATGTTGA+GGG + chr4.3:79562122-79562141 None:intergenic 35.0%
CAAAGTGTGTTCAAACTAGT+AGG - chr4.3:79563182-79563201 MS.gene037652:CDS 35.0%
CAGAAACAGAATGTAGTAGT+AGG - chr4.3:79560511-79560530 MS.gene037652:intron 35.0%
CAGAATCTTGATTGTACTTG+TGG - chr4.3:79559240-79559259 MS.gene037652:intron 35.0%
CATAAGTGTCACATAAGTGA+CGG + chr4.3:79559582-79559601 None:intergenic 35.0%
CCCAGCTTATGATATCAATT+AGG + chr4.3:79560940-79560959 None:intergenic 35.0%
CTTCACTTCAAGATCAACAA+GGG + chr4.3:79562443-79562462 None:intergenic 35.0%
CTTGTTACGAAGAGCAATAT+TGG + chr4.3:79561243-79561262 None:intergenic 35.0%
GAACCTTAAAGGGAATAAGT+TGG - chr4.3:79560710-79560729 MS.gene037652:intron 35.0%
GAATAGAAAGGAAAGTAAGG+AGG - chr4.3:79560450-79560469 MS.gene037652:intron 35.0%
GAATGTAGTAGTAGGGAATT+AGG - chr4.3:79560519-79560538 MS.gene037652:intron 35.0%
GCAATATTGGAACGGATATT+TGG + chr4.3:79561230-79561249 None:intergenic 35.0%
GCTTCCTTACAATACCATTA+GGG - chr4.3:79561942-79561961 MS.gene037652:intron 35.0%
GTACTCTATCAGAACCTTAA+AGG - chr4.3:79560699-79560718 MS.gene037652:intron 35.0%
GTAGAATTAAAGATAGAGGG+AGG - chr4.3:79562220-79562239 MS.gene037652:intron 35.0%
GTTCAAGGACCTACTAATTT+GGG + chr4.3:79559849-79559868 None:intergenic 35.0%
TACCCAACTTATTCCCTTTA+AGG + chr4.3:79560716-79560735 None:intergenic 35.0%
TACGAAGAGCAATATTGGAA+CGG + chr4.3:79561238-79561257 None:intergenic 35.0%
TATATGCTTCATAGACCACA+TGG + chr4.3:79562578-79562597 None:intergenic 35.0%
TATCAGATGCGTATCAGTAT+CGG + chr4.3:79562638-79562657 None:intergenic 35.0%
TATTGCTCTTCGTAACAAGT+TGG - chr4.3:79561244-79561263 MS.gene037652:intron 35.0%
TCAATGCCAACAAATCTGAA+CGG - chr4.3:79560838-79560857 MS.gene037652:intron 35.0%
TCAGAATCATCATCATTCCT+CGG - chr4.3:79559018-79559037 MS.gene037652:intron 35.0%
TCATATCATACTGTGTATCC+AGG - chr4.3:79563030-79563049 MS.gene037652:CDS 35.0%
TCCTTAGGCTGTTTATTAGT+GGG + chr4.3:79559270-79559289 None:intergenic 35.0%
TCTCCTACACTATATAATGC+CGG + chr4.3:79562355-79562374 None:intergenic 35.0%
TTCAACATGACACAGATATG+AGG + chr4.3:79563009-79563028 None:intergenic 35.0%
TTCACTTCAAGATCAACAAG+GGG + chr4.3:79562442-79562461 None:intergenic 35.0%
TTCTTGCATAGTGATTCACA+TGG + chr4.3:79559141-79559160 None:intergenic 35.0%
! ACTAGTTTGAACACACTTTG+AGG + chr4.3:79563182-79563201 None:intergenic 35.0%
! AGTAAGAATTGGGAGAGTTT+TGG - chr4.3:79560556-79560575 MS.gene037652:intron 35.0%
! ATAGACTAGCCCACAAAAAA+TGG + chr4.3:79559776-79559795 None:intergenic 35.0%
! ATGTTTAGATATAGGTTGGG+TGG - chr4.3:79562861-79562880 MS.gene037652:CDS 35.0%
! GGGGTTTTTGTTAAGGAAAA+TGG - chr4.3:79559327-79559346 MS.gene037652:intron 35.0%
! GTAAGAATTGGGAGAGTTTT+GGG - chr4.3:79560557-79560576 MS.gene037652:intron 35.0%
! TAAGAATTGGGAGAGTTTTG+GGG - chr4.3:79560558-79560577 MS.gene037652:intron 35.0%
! TGTTTAGATATAGGTTGGGT+GGG - chr4.3:79562862-79562881 MS.gene037652:CDS 35.0%
! TTGGACTTATGGAAAGGTAT+TGG + chr4.3:79562665-79562684 None:intergenic 35.0%
! TTGGATGGTAACTCTTTTGT+TGG - chr4.3:79561980-79561999 MS.gene037652:intron 35.0%
!! CCTCTAAAACCTTTATCTTG+CGG - chr4.3:79560056-79560075 MS.gene037652:CDS 35.0%
!! GGAATTAGTTTGTCAGTTAG+AGG + chr4.3:79560907-79560926 None:intergenic 35.0%
!! GTAGATGGGGAAAAAGTATT+AGG + chr4.3:79560651-79560670 None:intergenic 35.0%
!! TAACGTCCATTTTAATGTCG+CGG + chr4.3:79561847-79561866 None:intergenic 35.0%
!! TGGACTTATGGAAAGGTATT+GGG + chr4.3:79562664-79562683 None:intergenic 35.0%
!! TTAATTTGTTGGGGGATCTT+GGG + chr4.3:79562303-79562322 None:intergenic 35.0%
!! TTTAATTTGTTGGGGGATCT+TGG + chr4.3:79562304-79562323 None:intergenic 35.0%
!! TTTTGACTGAATGTGTCTCT+AGG - chr4.3:79559547-79559566 MS.gene037652:intron 35.0%
!!! TCCATTGTAAAGGTTTTGGA+TGG - chr4.3:79561965-79561984 MS.gene037652:intron 35.0%
AAAACTTGGTATCCGGTTCA+AGG + chr4.3:79559864-79559883 None:intergenic 40.0%
AAGTATTAGGATCAACCCTC+TGG + chr4.3:79560638-79560657 None:intergenic 40.0%
AATTGCAACAGGAGTAGATG+GGG + chr4.3:79560664-79560683 None:intergenic 40.0%
ACCATTAGGGTCCATTGTAA+AGG - chr4.3:79561955-79561974 MS.gene037652:intron 40.0%
ACCCACTAATAAACAGCCTA+AGG - chr4.3:79559266-79559285 MS.gene037652:intron 40.0%
ACCTTTACAATGGACCCTAA+TGG + chr4.3:79561959-79561978 None:intergenic 40.0%
AGAACTATGTTGCGAATCGT+TGG - chr4.3:79560107-79560126 MS.gene037652:CDS 40.0%
AGACCGGCATTATATAGTGT+AGG - chr4.3:79562349-79562368 MS.gene037652:intron 40.0%
AGAGAGAGTCATATACAAGC+GGG + chr4.3:79560812-79560831 None:intergenic 40.0%
AGCAAAAGCCTTGACTGAAA+TGG - chr4.3:79562276-79562295 MS.gene037652:intron 40.0%
AGCCTAAACTAGAAGACTGA+TGG - chr4.3:79563224-79563243 MS.gene037652:CDS 40.0%
AGGGGAATGAGGTACAAAAT+GGG - chr4.3:79559307-79559326 MS.gene037652:intron 40.0%
AGTAAAATGAGGGTAACGCA+GGG - chr4.3:79559993-79560012 MS.gene037652:CDS 40.0%
ATCTGTACAGCAAAAGGACA+GGG + chr4.3:79561695-79561714 None:intergenic 40.0%
ATGCAGATATTGGTGGAATC+AGG - chr4.3:79559408-79559427 MS.gene037652:intron 40.0%
ATGGAAGTCACCAAAGAACT+TGG + chr4.3:79559390-79559409 None:intergenic 40.0%
CAATTGCAACAGGAGTAGAT+GGG + chr4.3:79560665-79560684 None:intergenic 40.0%
CAGAGAGAGTCATATACAAG+CGG + chr4.3:79560813-79560832 None:intergenic 40.0%
CATCGTTGTTTGTGGTTAAG+AGG + chr4.3:79558984-79559003 None:intergenic 40.0%
CCTAAGGATTTGGATTCTGA+GGG - chr4.3:79559282-79559301 MS.gene037652:intron 40.0%
CCTGCAAATTGCAAATCAAG+AGG + chr4.3:79563063-79563082 None:intergenic 40.0%
CCTTCACTTCAAGATCAACA+AGG + chr4.3:79562444-79562463 None:intergenic 40.0%
CCTTGTTGATCTTGAAGTGA+AGG - chr4.3:79562441-79562460 MS.gene037652:intron 40.0%
GAACTATGTTGCGAATCGTT+GGG - chr4.3:79560108-79560127 MS.gene037652:CDS 40.0%
GAAGTCAACAAAGTTTCCAC+TGG + chr4.3:79561915-79561934 None:intergenic 40.0%
GAAGTGAAGGTGATAAGCAT+TGG - chr4.3:79562454-79562473 MS.gene037652:intron 40.0%
GAGACACATTCAGTCAAAAG+TGG + chr4.3:79559546-79559565 None:intergenic 40.0%
GATGTACATGAGGAATGTTG+AGG + chr4.3:79562123-79562142 None:intergenic 40.0%
GATTTAAGGGCAATTGCAAC+AGG + chr4.3:79560675-79560694 None:intergenic 40.0%
GGTTCAAGGACCTACTAATT+TGG + chr4.3:79559850-79559869 None:intergenic 40.0%
GTGAGCATTTGTTTGCATAC+AGG + chr4.3:79559105-79559124 None:intergenic 40.0%
TAAAGACACAGTTGTCTTCC+AGG - chr4.3:79562757-79562776 MS.gene037652:CDS 40.0%
TAGTAAAATGAGGGTAACGC+AGG - chr4.3:79559992-79560011 MS.gene037652:CDS 40.0%
TCTGATCCTATTGATCCAGA+GGG - chr4.3:79560620-79560639 MS.gene037652:intron 40.0%
TGATTCCACCAATATCTGCA+TGG + chr4.3:79559409-79559428 None:intergenic 40.0%
TGCAGATATTGGTGGAATCA+GGG - chr4.3:79559409-79559428 MS.gene037652:intron 40.0%
TGGACCCTAATGGTATTGTA+AGG + chr4.3:79561949-79561968 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG + chr4.3:79562121-79562140 None:intergenic 40.0%
TGTAGAGTAAGAACTTGGAG+AGG - chr4.3:79559695-79559714 MS.gene037652:CDS 40.0%
TTCAAGTGTTCAACACAAGC+AGG - chr4.3:79561019-79561038 MS.gene037652:intron 40.0%
TTCAGCATCTGTACAGCAAA+AGG + chr4.3:79561701-79561720 None:intergenic 40.0%
TTTGAATGTGAGACCTTGAG+AGG + chr4.3:79559742-79559761 None:intergenic 40.0%
! ACACAACTTTGGAAAACAGG+AGG - chr4.3:79559464-79559483 MS.gene037652:intron 40.0%
! AGGGTCCATTGTAAAGGTTT+TGG - chr4.3:79561961-79561980 MS.gene037652:intron 40.0%
! ATTTACACTGACTAGTGGAC+TGG - chr4.3:79563117-79563136 MS.gene037652:CDS 40.0%
! CACACACAACTTTGGAAAAC+AGG - chr4.3:79559461-79559480 MS.gene037652:intron 40.0%
! CTTTGGAAAACAGGAGGTAA+TGG - chr4.3:79559470-79559489 MS.gene037652:intron 40.0%
! GAGGAATGATGATGATTCTG+AGG + chr4.3:79559019-79559038 None:intergenic 40.0%
! GTTTAGATATAGGTTGGGTG+GGG - chr4.3:79562863-79562882 MS.gene037652:CDS 40.0%
! TGGTTTGGACAATCAAAGTG+TGG + chr4.3:79562097-79562116 None:intergenic 40.0%
! TTTAGATATAGGTTGGGTGG+GGG - chr4.3:79562864-79562883 MS.gene037652:CDS 40.0%
!! AACGTCCATTTTAATGTCGC+GGG + chr4.3:79561846-79561865 None:intergenic 40.0%
!! ACTTATGGAAAGGTATTGGG+AGG + chr4.3:79562661-79562680 None:intergenic 40.0%
!! CCGCAAGATAAAGGTTTTAG+AGG + chr4.3:79560059-79560078 None:intergenic 40.0%
!! CCTCTTGATTTGCAATTTGC+AGG - chr4.3:79563060-79563079 MS.gene037652:CDS 40.0%
!! GAGAGTGTCAACAAAGTCTT+TGG + chr4.3:79558923-79558942 None:intergenic 40.0%
!! GTGTGTGTGTGTTTTGGATA+GGG + chr4.3:79561507-79561526 None:intergenic 40.0%
!! TATACAGCTCTGGCTTTAGT+TGG - chr4.3:79559793-79559812 MS.gene037652:CDS 40.0%
!! TGTGTGTGTGTGTTTTGGAT+AGG + chr4.3:79561508-79561527 None:intergenic 40.0%
ACTGCTGATGCAAACTGGTT+TGG + chr4.3:79561806-79561825 None:intergenic 45.0%
AGCCCACAAAAAATGGCACA+GGG + chr4.3:79559769-79559788 None:intergenic 45.0%
AGGTTAAGGTGTACTTGAGG+AGG + chr4.3:79561724-79561743 None:intergenic 45.0%
AGTAAGAACTTGGAGAGGCT+TGG - chr4.3:79559700-79559719 MS.gene037652:CDS 45.0%
ATAATCTGTGCAGAAGCCAG+TGG - chr4.3:79561896-79561915 MS.gene037652:intron 45.0%
ATTTGTCAGAGGCTCATGAG+AGG + chr4.3:79561744-79561763 None:intergenic 45.0%
CAATTGCAGCCGCAAGATAA+AGG + chr4.3:79560068-79560087 None:intergenic 45.0%
CAGGAAGTCACACACAACTT+TGG - chr4.3:79559453-79559472 MS.gene037652:intron 45.0%
CAGGGGAATGAGGTACAAAA+TGG - chr4.3:79559306-79559325 MS.gene037652:intron 45.0%
CATCTGTACAGCAAAAGGAC+AGG + chr4.3:79561696-79561715 None:intergenic 45.0%
CCCTCAGAATCCAAATCCTT+AGG + chr4.3:79559285-79559304 None:intergenic 45.0%
CTAAATTGTGGTCGCGATTG+TGG - chr4.3:79559946-79559965 MS.gene037652:CDS 45.0%
CTCTGATCCTATTGATCCAG+AGG - chr4.3:79560619-79560638 MS.gene037652:intron 45.0%
CTCTGGATCAATAGGATCAG+AGG + chr4.3:79560621-79560640 None:intergenic 45.0%
CTTCAAGATCAACAAGGGGA+AGG + chr4.3:79562438-79562457 None:intergenic 45.0%
CTTTGACTGCTGATGCAAAC+TGG + chr4.3:79561811-79561830 None:intergenic 45.0%
GACACCAGGATTGAGTAACA+TGG + chr4.3:79562071-79562090 None:intergenic 45.0%
GACATGAGTCAGAAGCTCTT+AGG + chr4.3:79561364-79561383 None:intergenic 45.0%
GACTTCCATGCAGATATTGG+TGG - chr4.3:79559401-79559420 MS.gene037652:intron 45.0%
GAGACACCGTTCAGATTTGT+TGG + chr4.3:79560847-79560866 None:intergenic 45.0%
GAGAGGTTAAGGTGTACTTG+AGG + chr4.3:79561727-79561746 None:intergenic 45.0%
GATCAACCCTCTGGATCAAT+AGG + chr4.3:79560629-79560648 None:intergenic 45.0%
GCAATTGCAACAGGAGTAGA+TGG + chr4.3:79560666-79560685 None:intergenic 45.0%
GCCTAAGGATTTGGATTCTG+AGG - chr4.3:79559281-79559300 MS.gene037652:intron 45.0%
GCTACTCTGATGAGTGGTAA+AGG + chr4.3:79561388-79561407 None:intergenic 45.0%
GGAGTGATTTCTAAGTCGCA+TGG - chr4.3:79562241-79562260 MS.gene037652:intron 45.0%
GGGGAATGAGGTACAAAATG+GGG - chr4.3:79559308-79559327 MS.gene037652:intron 45.0%
GGTGACTTCCATGCAGATAT+TGG - chr4.3:79559398-79559417 MS.gene037652:intron 45.0%
GTAAGAACTTGGAGAGGCTT+GGG - chr4.3:79559701-79559720 MS.gene037652:CDS 45.0%
TAGCCCACAAAAAATGGCAC+AGG + chr4.3:79559770-79559789 None:intergenic 45.0%
TCATAAGCTGGGCGATCTAT+TGG - chr4.3:79560948-79560967 MS.gene037652:intron 45.0%
TCTTGGGTCCATTTCAGTCA+AGG + chr4.3:79562287-79562306 None:intergenic 45.0%
TGTGGTTAAGAGGCGAATGA+TGG + chr4.3:79558974-79558993 None:intergenic 45.0%
TTGATGTCAAGGAAGCTGCA+AGG + chr4.3:79563096-79563115 None:intergenic 45.0%
TTGCACCCGCGACATTAAAA+TGG - chr4.3:79561838-79561857 MS.gene037652:intron 45.0%
! AGAGGTTTTTGATGCTTCCG+AGG + chr4.3:79559038-79559057 None:intergenic 45.0%
! ATTTGGATTCTGAGGGTCAG+GGG - chr4.3:79559289-79559308 MS.gene037652:intron 45.0%
! CCAAACATCGTTTGGAGTGA+GGG + chr4.3:79559076-79559095 None:intergenic 45.0%
! GATTTGGATTCTGAGGGTCA+GGG - chr4.3:79559288-79559307 MS.gene037652:intron 45.0%
! GGAGTGTTCCAAACATCGTT+TGG + chr4.3:79559084-79559103 None:intergenic 45.0%
! GTACAAGAGTGTAGAGAGCT+TGG - chr4.3:79562018-79562037 MS.gene037652:intron 45.0%
! GTGTGTGTGTGTGTGTGTTT+TGG + chr4.3:79561513-79561532 None:intergenic 45.0%
! TCCAAACATCGTTTGGAGTG+AGG + chr4.3:79559077-79559096 None:intergenic 45.0%
! TCGTTGGGCTTTTCAGTCTA+AGG - chr4.3:79560123-79560142 MS.gene037652:CDS 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG - chr4.3:79562465-79562484 MS.gene037652:intron 45.0%
!! GGTTGGTCTCCCAAATTAGT+AGG - chr4.3:79559837-79559856 MS.gene037652:CDS 45.0%
!!! CTCCCTGTGCCATTTTTTGT+GGG - chr4.3:79559764-79559783 MS.gene037652:CDS 45.0%
!! ATAAAGAATTAATAAATTAT+TGG + chr4.3:79562684-79562703 None:intergenic 5.0%
ATGTCAAGGAAGCTGCAAGG+AGG + chr4.3:79563093-79563112 None:intergenic 50.0%
CACCAGATACGACACTGACA+TGG + chr4.3:79559655-79559674 None:intergenic 50.0%
CAGAGGCTCATGAGAGGTTA+AGG + chr4.3:79561738-79561757 None:intergenic 50.0%
CCACAAAAAATGGCACAGGG+AGG + chr4.3:79559766-79559785 None:intergenic 50.0%
CCCTCACTCCAAACGATGTT+TGG - chr4.3:79559073-79559092 MS.gene037652:intron 50.0%
CGACATCGCAACTGCAATTG+CGG + chr4.3:79560027-79560046 None:intergenic 50.0%
CGCAATGCTACTCTGATGAG+TGG + chr4.3:79561394-79561413 None:intergenic 50.0%
CGCTCCATGTTACTCAATCC+TGG - chr4.3:79562064-79562083 MS.gene037652:intron 50.0%
CTTCATAGACCACATGGGAG+GGG + chr4.3:79562572-79562591 None:intergenic 50.0%
GCTTCATAGACCACATGGGA+GGG + chr4.3:79562573-79562592 None:intergenic 50.0%
GGGTTTGTACGCTTTCGTAG+AGG + chr4.3:79559056-79559075 None:intergenic 50.0%
GGTGGGATTTGTGAAGAGAC+CGG - chr4.3:79562333-79562352 MS.gene037652:intron 50.0%
GGTTAAGAGGCGAATGATGG+TGG + chr4.3:79558971-79558990 None:intergenic 50.0%
GTCCATGTCAGTGTCGTATC+TGG - chr4.3:79559650-79559669 MS.gene037652:CDS 50.0%
TAGAGAGCTTGGACTCTTCG+TGG - chr4.3:79562029-79562048 MS.gene037652:intron 50.0%
TCAAAGTGTGGTGAGACACC+AGG + chr4.3:79562085-79562104 None:intergenic 50.0%
TGCTTCATAGACCACATGGG+AGG + chr4.3:79562574-79562593 None:intergenic 50.0%
TTCATAGACCACATGGGAGG+GGG + chr4.3:79562571-79562590 None:intergenic 50.0%
! GGATTTGGATTCTGAGGGTC+AGG - chr4.3:79559287-79559306 MS.gene037652:intron 50.0%
!! CTGATGCAAACTGGTTTGGC+GGG + chr4.3:79561802-79561821 None:intergenic 50.0%
!! GCTGATGCAAACTGGTTTGG+CGG + chr4.3:79561803-79561822 None:intergenic 50.0%
!! GTGAGTGGTGGATGTACATG+AGG + chr4.3:79562133-79562152 None:intergenic 50.0%
!! TGGCGGGTTGTCTTTGTTCT+TGG + chr4.3:79561786-79561805 None:intergenic 50.0%
!! TGGGCTAGTCTATACAGCTC+TGG - chr4.3:79559783-79559802 MS.gene037652:CDS 50.0%
!!! CCTCCCTGTGCCATTTTTTG+TGG - chr4.3:79559763-79559782 MS.gene037652:CDS 50.0%
ATACAAGCGGGAGCCCTTGA+AGG + chr4.3:79560800-79560819 None:intergenic 55.0%
CATCGCAACTGCAATTGCGG+TGG + chr4.3:79560024-79560043 None:intergenic 55.0%
CATGAGGAATGTTGAGGGGC+TGG + chr4.3:79562117-79562136 None:intergenic 55.0%
CTTGGAGAGGCTTGGGATCT+TGG - chr4.3:79559708-79559727 MS.gene037652:CDS 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr4.3:79559726-79559745 MS.gene037652:CDS 55.0%
TCATAGACCACATGGGAGGG+GGG + chr4.3:79562570-79562589 None:intergenic 55.0%
! TGGTGGCGAGTGGAAGAGAA+AGG + chr4.3:79558954-79558973 None:intergenic 55.0%
! TTCTGAGGGTCAGGGGAATG+AGG - chr4.3:79559296-79559315 MS.gene037652:intron 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG + chr4.3:79562112-79562131 None:intergenic 55.0%
AACCGCGCTGTCTACTCGTG+GGG + chr4.3:79559821-79559840 None:intergenic 60.0%
ACATGGGAGGGGGGTCAAAG+AGG + chr4.3:79562561-79562580 None:intergenic 60.0%
CAACCGCGCTGTCTACTCGT+GGG + chr4.3:79559822-79559841 None:intergenic 60.0%
TCTTTGACCCCCCTCCCATG+TGG - chr4.3:79562560-79562579 MS.gene037652:intron 60.0%
TGCGGCTGCAATTGCTGCTG+CGG - chr4.3:79560074-79560093 MS.gene037652:CDS 60.0%
!! AGGCGAATGATGGTGGCGAG+TGG + chr4.3:79558964-79558983 None:intergenic 60.0%
AGCCCCACGAGTAGACAGCG+CGG - chr4.3:79559816-79559835 MS.gene037652:CDS 65.0%
CCAACCGCGCTGTCTACTCG+TGG + chr4.3:79559823-79559842 None:intergenic 65.0%
CCACGAGTAGACAGCGCGGT+TGG - chr4.3:79559820-79559839 MS.gene037652:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 79558835 79563243 79558835 ID=MS.gene037652
chr4.3 mRNA 79558835 79563243 79558835 ID=MS.gene037652.t1;Parent=MS.gene037652
chr4.3 exon 79562593 79563243 79562593 ID=MS.gene037652.t1.exon1;Parent=MS.gene037652.t1
chr4.3 CDS 79562593 79563243 79562593 ID=cds.MS.gene037652.t1;Parent=MS.gene037652.t1
chr4.3 exon 79559592 79560365 79559592 ID=MS.gene037652.t1.exon2;Parent=MS.gene037652.t1
chr4.3 CDS 79559592 79560365 79559592 ID=cds.MS.gene037652.t1;Parent=MS.gene037652.t1
chr4.3 exon 79558835 79558996 79558835 ID=MS.gene037652.t1.exon3;Parent=MS.gene037652.t1
chr4.3 CDS 79558835 79558996 79558835 ID=cds.MS.gene037652.t1;Parent=MS.gene037652.t1
Gene Sequence

>MS.gene037652

ATGGCTTCTGAAGAAGAGCCAAAAACGATTCCACTGAAAATCTTAATTGACAGAGAAAACAACAAAGTTGTCGCTGTAGAATCAACCAAAGACTTTGTTGACACTCTCTTCAGCTTCCTTTCTCTTCCACTCGCCACCATCATTCGCCTCTTAACCACAAACAACGATGATCAAAAACAATCCTCAGAATCATCATCATTCCTCGGAAGCATCAAAAACCTCTACGAAAGCGTACAAACCCTCACTCCAAACGATGTTTGGAACACTCCTGTATGCAAACAAATGCTCACAAATCCAAAGAATCCATGTGAATCACTATGCAAGAAGCTTTTCTTGAATATTGATGACACTGAATGGCCAAGTAAGTTTTTTGTGTGTGATTCTTGTTACAAATTTACAACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAATAAACAGCCTAAGGATTTGGATTCTGAGGGTCAGGGGAATGAGGTACAAAATGGGGTTTTTGTTAAGGAAAATGGGTCATTGTTTCTCGTGTCTGATGATTTAAAGATTGTGCCAAGTTCTTTGGTGACTTCCATGCAGATATTGGTGGAATCAGGGTATTCTGATTTGACTCAATTACAGGAAGTCACACACAACTTTGGAAAACAGGAGGTAATGGTGTTGTGTTTTACAATGTCTATTTTTATGTCATGTTACTCTGTTGCATTGCCACTTTTGACTGAATGTGTCTCTAGGTGTCTGACACCGTCACTTATGTGACACTTATGATTGCATTGAATTATGTCATTTTCTTAAAATTTTATCGGCGTCGACGTGTCCATGTCAGTGTCGTATCTGGTGTCCGTGTTTCATAACATGTTTGTAGAGTAAGAACTTGGAGAGGCTTGGGATCTTGGAGTGTGCTCCTCTCAAGGTCTCACATTCAAATCCTCCCTGTGCCATTTTTTGTGGGCTAGTCTATACAGCTCTGGCTTTAGTTGGAGCCCCACGAGTAGACAGCGCGGTTGGTCTCCCAAATTAGTAGGTCCTTGAACCGGATACCAAGTTTTAAAAAAATAAATTGTAGCGTAAGAAAAATCCGAAAAAATATTTGAAACTGTGAATCATTGTTCTAAATTGTGGTCGCGATTGTGGATACGATGCAAACCTTGTTATTGTAGTAAAATGAGGGTAACGCAGGGTGATGCCACCGCAATTGCAGTTGCGATGTCGTTGCAGAGACCTCTAAAACCTTTATCTTGCGGCTGCAATTGCTGCTGCGGACTACAATTTAGAACTATGTTGCGAATCGTTGGGCTTTTCAGTCTAAGGTTACTTAGAACTCAAGTCTTAAGTGTTTGCATTTTAGTCTAGTGTTAGTAGAATACACATGTTAACTATGAGTATCAAACTGGATCAAAATAACTAATGAATAATGGTTTTGAGATCTTTTCTGAGTTTTTCTTGTTTCACAGACAAGTTAACAATGTCCTATAATTTGAGGTATTGAATTGGTGATTCACTCTTTTTGCTTTTTGAACTTGCATTGTATGTTTAGACTGTTCTTGAATTATGAACCTTAACTTTATAACTTTCGTTTTTTAGGGTAGTTTGTATATGGAATACCATCTGTTAAGAATAGAAAGGAAAGTAAGGAGGTAAATAGAGCAGTCGTAACTGATATAGTTGTAAACTGACAGAAACAGAATGTAGTAGTAGGGAATTAGGGTGTTGCACAGATAAGTAAGAATTGGGAGAGTTTTGGGGCACTTTTGAATTAGCCTAGAGTTTATCACTTTCTATTCCTCTGATCCTATTGATCCAGAGGGTTGATCCTAATACTTTTTCCCCATCTACTCCTGTTGCAATTGCCCTTAAATCTATTGTACTCTATCAGAACCTTAAAGGGAATAAGTTGGGTAAAAGAGAAGATGGTTTTTACTGATTAAATAAAATTGAACAAAACCAAAGAAAAAGATTTAACCTTCAAGGGCTCCCGCTTGTATATGACTCTCTCTGTCTGATCAATGCCAACAAATCTGAACGGTGTCTCTGCTCTTACATCCCTTATTTAGTTATCGAACTAATCCCCTCTAACTGACAAACTAATTCCTCAAATTGTTCCTAATTGATATCATAAGCTGGGCGATCTATTGGTTAACAGTTCAACCATTTTTACACTAATTATTCTGATAAATATTGAATTTCAAGTGTTCAACACAAGCAGGTTGCACCTTATCTTCATTCACCTCATCTTTATTTATGCTTCCACATAAAGTTATTAGTGTACCATAAATGAAAAGGGAAAACATTACTTAATAAACATTCACAATGTTATGATGGTTTACTTAGTGGCTAGTTGTTGTACTTAAATTACGGACACACTATAAATCTTGAGTTAGAAATTAGTACTCCAAATATCCGTTCCAATATTGCTCTTCGTAACAAGTTGGTGAGTATTTTTTTTTAATGTAACAACTAACAAGTTTTATTGTTTTTGCTGCTGTGTGATCAAGTAGAACATGCTGAAATGTGTTTGTCGTTGCACCTAAGAGCTTCTGACTCATGTCACCTTTACCACTCATCAGAGTAGCATTGCGTATCTCAACTAATTTGAGTGAAGAGTTAAAGGTGTTGAAATAGTTAAGAGAAAAATACTAACATAACAATTAATCAATATACTAATATTTCCCTATCCAAAACACACACACACACACACACACACACACACACACACACACACACACACTGTTATTGTTACCGTTTGGTTTAATATCTTGTATTTCTGTTATGTAATGTGAATTTGTTAGTGAAATATTTTAAAAGAATGTTATATTGGGGTCATTTGTATGTATGTTATCTTGGATAAAAATGTTTTCCCTGTCCTTTTGCTGTACAGATGCTGAACCTCCTCAAGTACACCTTAACCTCTCATGAGCCTCTGACAAATACAATTTTGAAAAGCAGCTCCAAGAACAAAGACAACCCGCCAAACCAGTTTGCATCAGCAGTCAAAGTAAAGACTTGCACCCGCGACATTAAAATGGACGTTAAGCTAGTGCGAAGTAAATCTCAGAAAAAGATAATCTGTGCAGAAGCCAGTGGAAACTTTGTTGACTTCATGTTTAGCTTCCTTACAATACCATTAGGGTCCATTGTAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGCGTTGATAATTTGTACAAGAGTGTAGAGAGCTTGGACTCTTCGTGGTGTACAAACTCGCGCTCCATGTTACTCAATCCTGGTGTCTCACCACACTTTGATTGTCCAAACCAGCCCCTCAACATTCCTCATGTACATCCACCACTCACTACATATTATTATGGTACAGGAACACCAAAGCAAGAGTATAATTATAGTTATTATGGTTATCAAACGGTAGAATTAAAGATAGAGGGAGGAGTGATTTCTAAGTCGCATGGATTGATTTATAAAGCAAAAGCCTTGACTGAAATGGACCCAAGATCCCCCAACAAATTAAAAAAAGATGTGGTGGGATTTGTGAAGAGACCGGCATTATATAGTGTAGGAGATGATCTAAAAGTAAAACCACTTTCTGCTAATTATTGCCTTTCATATTTGAAAGAATTAAACCTTCCCCTTGTTGATCTTGAAGTGAAGGTGATAAGCATTGGTGAAGCTGAGGTAAAGTAACTACTATTACTAAATTTATAATTTTTTTTTTCCTTTTGTTTATTTGTTGTCTAAGTTTTTAGCCTCTTTGACCCCCCTCCCATGTGGTCTATGAAGCATATACTTCAAAATTAGAGAAGTATTAATTTATGACACGTATCCGATACTGATACGCATCTGATACCTCCCAATACCTTTCCATAAGTCCAATAATTTATTAATTCTTTATGAAAATATTTTCATTGATACTTCTCAAATACATCTTCAATACTTCTTACCAACTAAAGACACAGTTGTCTTCCAGGTACACTACATTTTTTATATGCTTTACTAACTAAAGAGACGTAGTTTTGTGATTTTTGGGTCACATTCTTTATAGAAATAATATGTTTAGATATAGGTTGGGTGGGGGAATTATATATGTAACTATGCTTACATGTTATGATTACAAGTACTTTTTTGTAAATTGCGATTACAATAATATCTTTATAAACGTTTTCGAATGCTATACATATCTTGGTTTTGTTGTATCCTCATATCTGTGTCATGTTGAATTCATATCATACTGTGTATCCAGGATTCTTACCTCTTGATTTGCAATTTGCAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAATTTACACTGACTAGTGGACTGGAAGAATTTTTTAATGAGCAAAAACAAGATTCAAATTTGACCTCAAAGTGTGTTCAAACTAGTAGGCTTGATAAAGTTGCAAAGAAGCCTAAACTAGAAGACTGA
Protein sequence

>MS.gene037652.t1

MASEEEPKTIPLKILIDRENNKVVAVESTKDFVDTLFSFLSLPLATIIRLLTTNNDDQKQSSESSSFLGSIKNLYESVQTLTPNDVWNTPVCKQMLTNPKNPCESLCKKLFLNIDDTEWPSKFFVCDSCYKFTTFQNLDCTCGKPTNKQPKDLDSEGQGNEVQNGVFVKENGSLFLVSDDLKIVPSSLVTSMQILVESGYSDLTQLQEVTHNFGKQEMLNLLKYTLTSHEPLTNTILKSSSKNKDNPPNQFASAVKVKTCTRDIKMDVKLVRSKSQKKIICAEASGNFVDFMFSFLTIPLGSIVKVLDGNSFVGCVDNLYKSVESLDSSWCTNSRSMLLNPGVSPHFDCPNQPLNIPHVHPPLTTYYYGTGTPKQEYNYSYYGYQTVELKIEGGVISKSHGLIYKAKALTEMDPRSPNKLKKDVVGFVKRPALYSVGDDLKVKPLSANYCLSYLKELNLPLVDLEVKVISIGEAEALSLLAASLTSKFTLTSGLEEFFNEQKQDSNLTSKCVQTSRLDKVAKKPKLED