Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84597.t1 | XP_013449064.1 | 79.1 | 473 | 98 | 1 | 1 | 472 | 1 | 473 | 6.40E-201 | 710.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84597.t1 | A0A072U0X9 | 79.1 | 473 | 98 | 1 | 1 | 472 | 1 | 473 | 4.6e-201 | 710.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055098 | MS.gene84597 | 0.874961 | 4.48E-68 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84597.t1 | MTR_7g066340 | 79.070 | 473 | 98 | 1 | 1 | 472 | 1 | 473 | 0.0 | 748 |
MS.gene84597.t1 | MTR_7g066310 | 66.810 | 464 | 90 | 2 | 9 | 472 | 4 | 403 | 0.0 | 595 |
MS.gene84597.t1 | MTR_7g066350 | 63.383 | 467 | 151 | 8 | 1 | 456 | 1 | 458 | 0.0 | 549 |
MS.gene84597.t1 | MTR_7g066280 | 66.435 | 432 | 73 | 2 | 91 | 472 | 1 | 410 | 0.0 | 542 |
MS.gene84597.t1 | MTR_7g066260 | 58.078 | 489 | 181 | 10 | 6 | 476 | 9 | 491 | 5.24e-180 | 520 |
MS.gene84597.t1 | MTR_1g041315 | 59.955 | 447 | 158 | 6 | 7 | 436 | 9 | 451 | 5.77e-176 | 510 |
MS.gene84597.t1 | MTR_7g066570 | 52.206 | 544 | 205 | 12 | 3 | 510 | 5 | 529 | 2.91e-162 | 478 |
MS.gene84597.t1 | MTR_7g066400 | 54.584 | 469 | 158 | 8 | 1 | 449 | 1 | 434 | 2.22e-158 | 463 |
MS.gene84597.t1 | MTR_7g066360 | 53.586 | 474 | 189 | 10 | 6 | 466 | 8 | 463 | 8.82e-147 | 435 |
MS.gene84597.t1 | MTR_7g012680 | 52.431 | 473 | 182 | 9 | 3 | 458 | 5 | 451 | 4.09e-145 | 430 |
MS.gene84597.t1 | MTR_7g066290 | 54.902 | 459 | 163 | 11 | 6 | 453 | 9 | 434 | 3.65e-144 | 427 |
MS.gene84597.t1 | MTR_7g058710 | 49.797 | 492 | 192 | 8 | 1 | 452 | 1 | 477 | 1.95e-140 | 419 |
MS.gene84597.t1 | MTR_7g066580 | 45.935 | 492 | 170 | 11 | 18 | 458 | 1 | 447 | 2.88e-123 | 374 |
MS.gene84597.t1 | MTR_7g058700 | 47.427 | 447 | 161 | 7 | 24 | 452 | 531 | 921 | 2.61e-112 | 359 |
MS.gene84597.t1 | MTR_2g029400 | 45.319 | 470 | 148 | 10 | 6 | 440 | 8 | 403 | 3.17e-110 | 338 |
MS.gene84597.t1 | MTR_7g066430 | 40.574 | 488 | 237 | 8 | 12 | 452 | 4 | 485 | 2.51e-107 | 334 |
MS.gene84597.t1 | MTR_7g066430 | 28.511 | 235 | 147 | 7 | 9 | 231 | 254 | 479 | 2.40e-15 | 79.7 |
MS.gene84597.t1 | MTR_7g066410 | 39.961 | 508 | 231 | 11 | 13 | 452 | 11 | 512 | 1.52e-106 | 333 |
MS.gene84597.t1 | MTR_7g066410 | 29.958 | 237 | 135 | 8 | 12 | 231 | 284 | 506 | 1.05e-16 | 84.0 |
MS.gene84597.t1 | MTR_7g066480 | 39.207 | 454 | 221 | 8 | 11 | 454 | 15 | 423 | 1.21e-89 | 286 |
MS.gene84597.t1 | MTR_7g066490 | 39.821 | 447 | 212 | 9 | 12 | 454 | 16 | 409 | 2.47e-85 | 274 |
MS.gene84597.t1 | MTR_7g062280 | 35.700 | 493 | 262 | 10 | 5 | 452 | 3 | 485 | 1.66e-84 | 274 |
MS.gene84597.t1 | MTR_7g063660 | 34.969 | 489 | 254 | 12 | 7 | 452 | 4 | 471 | 2.87e-84 | 273 |
MS.gene84597.t1 | MTR_7g062300 | 36.402 | 478 | 265 | 11 | 1 | 448 | 1 | 469 | 1.27e-83 | 271 |
MS.gene84597.t1 | MTR_7g063820 | 37.120 | 493 | 248 | 12 | 5 | 452 | 3 | 478 | 3.35e-83 | 271 |
MS.gene84597.t1 | MTR_7g063900 | 39.712 | 486 | 235 | 14 | 12 | 452 | 10 | 482 | 4.66e-82 | 268 |
MS.gene84597.t1 | MTR_7g063900 | 26.230 | 244 | 141 | 9 | 265 | 471 | 13 | 254 | 2.96e-12 | 69.7 |
MS.gene84597.t1 | MTR_7g063880 | 36.364 | 484 | 249 | 14 | 5 | 453 | 4 | 463 | 2.06e-81 | 265 |
MS.gene84597.t1 | MTR_7g063830 | 35.974 | 467 | 255 | 10 | 1 | 452 | 1 | 438 | 3.57e-78 | 256 |
MS.gene84597.t1 | MTR_7g063890 | 38.636 | 484 | 244 | 11 | 11 | 452 | 26 | 498 | 1.89e-77 | 256 |
MS.gene84597.t1 | MTR_4g019310 | 35.070 | 499 | 254 | 12 | 6 | 448 | 2 | 486 | 3.34e-77 | 255 |
MS.gene84597.t1 | MTR_4g019310 | 30.603 | 232 | 140 | 11 | 13 | 234 | 267 | 487 | 9.47e-14 | 74.7 |
MS.gene84597.t1 | MTR_7g063840 | 34.927 | 481 | 270 | 11 | 1 | 452 | 1 | 467 | 3.22e-75 | 249 |
MS.gene84597.t1 | MTR_3g007740 | 37.419 | 465 | 238 | 14 | 11 | 452 | 8 | 442 | 1.22e-74 | 247 |
MS.gene84597.t1 | MTR_7g063920 | 34.656 | 479 | 237 | 10 | 1 | 452 | 1 | 430 | 8.67e-74 | 244 |
MS.gene84597.t1 | MTR_4g017830 | 33.017 | 527 | 274 | 14 | 1 | 463 | 1 | 512 | 6.93e-72 | 242 |
MS.gene84597.t1 | MTR_4g017440 | 32.941 | 510 | 264 | 14 | 6 | 452 | 8 | 502 | 5.93e-69 | 233 |
MS.gene84597.t1 | MTR_4g019340 | 34.172 | 477 | 255 | 11 | 13 | 442 | 39 | 503 | 6.00e-68 | 231 |
MS.gene84597.t1 | MTR_4g019340 | 26.047 | 215 | 144 | 4 | 12 | 226 | 303 | 502 | 9.59e-12 | 68.2 |
MS.gene84597.t1 | MTR_3g065200 | 34.194 | 465 | 214 | 12 | 10 | 439 | 1 | 408 | 2.32e-67 | 228 |
MS.gene84597.t1 | MTR_7g066680 | 46.154 | 299 | 98 | 6 | 214 | 449 | 37 | 335 | 1.71e-66 | 222 |
MS.gene84597.t1 | MTR_7g066680 | 25.943 | 212 | 141 | 8 | 6 | 210 | 80 | 282 | 4.83e-11 | 65.1 |
MS.gene84597.t1 | MTR_7g063670 | 34.725 | 455 | 263 | 10 | 13 | 452 | 16 | 451 | 2.12e-65 | 223 |
MS.gene84597.t1 | MTR_1g014060 | 53.182 | 220 | 95 | 4 | 21 | 237 | 9 | 223 | 3.21e-65 | 220 |
MS.gene84597.t1 | MTR_1g014060 | 41.589 | 214 | 104 | 5 | 259 | 458 | 184 | 390 | 1.79e-35 | 138 |
MS.gene84597.t1 | MTR_4g017610 | 33.194 | 479 | 258 | 15 | 15 | 449 | 16 | 476 | 2.09e-64 | 221 |
MS.gene84597.t1 | MTR_4g017410 | 33.065 | 496 | 269 | 17 | 6 | 452 | 3 | 484 | 2.38e-62 | 216 |
MS.gene84597.t1 | MTR_4g017470 | 29.767 | 514 | 255 | 11 | 1 | 452 | 1 | 470 | 3.84e-53 | 190 |
MS.gene84597.t1 | MTR_4g017470 | 27.386 | 241 | 144 | 7 | 255 | 477 | 5 | 232 | 1.33e-11 | 67.8 |
MS.gene84597.t1 | MTR_7g066390 | 57.595 | 158 | 39 | 1 | 303 | 460 | 1 | 130 | 9.06e-50 | 171 |
MS.gene84597.t1 | MTR_4g017550 | 30.169 | 474 | 241 | 19 | 41 | 448 | 20 | 469 | 1.32e-42 | 160 |
MS.gene84597.t1 | MTR_7g063720 | 37.143 | 210 | 119 | 3 | 256 | 452 | 17 | 226 | 2.08e-35 | 134 |
MS.gene84597.t1 | MTR_7g063720 | 29.185 | 233 | 134 | 10 | 2 | 231 | 16 | 220 | 2.83e-17 | 82.0 |
MS.gene84597.t1 | MTR_7g062270 | 36.782 | 174 | 109 | 1 | 13 | 186 | 11 | 183 | 1.66e-29 | 121 |
MS.gene84597.t1 | MTR_7g100420 | 35.897 | 273 | 132 | 8 | 214 | 452 | 134 | 397 | 1.38e-26 | 113 |
MS.gene84597.t1 | MTR_2g067310 | 41.618 | 173 | 61 | 6 | 23 | 195 | 58 | 190 | 3.24e-26 | 108 |
MS.gene84597.t1 | MTR_8g023240 | 23.902 | 569 | 354 | 17 | 13 | 543 | 38 | 565 | 2.53e-25 | 111 |
MS.gene84597.t1 | MTR_7g063690 | 31.655 | 278 | 121 | 9 | 13 | 289 | 13 | 222 | 2.66e-25 | 105 |
MS.gene84597.t1 | MTR_1g115440 | 33.600 | 250 | 140 | 9 | 1 | 236 | 1 | 238 | 1.44e-24 | 103 |
MS.gene84597.t1 | MTR_8g445860 | 29.918 | 244 | 151 | 6 | 4 | 237 | 5 | 238 | 4.04e-24 | 102 |
MS.gene84597.t1 | MTR_8g445860 | 29.279 | 222 | 120 | 5 | 260 | 445 | 11 | 231 | 7.00e-20 | 89.7 |
MS.gene84597.t1 | MTR_0150s0010 | 31.102 | 254 | 140 | 8 | 1 | 236 | 1 | 237 | 6.73e-21 | 92.8 |
MS.gene84597.t1 | MTR_0150s0010 | 30.222 | 225 | 117 | 5 | 260 | 445 | 8 | 231 | 1.51e-19 | 89.0 |
MS.gene84597.t1 | MTR_4g019240 | 39.423 | 104 | 51 | 4 | 13 | 108 | 14 | 113 | 1.23e-14 | 73.2 |
MS.gene84597.t1 | MTR_1g115455 | 26.721 | 247 | 150 | 7 | 6 | 237 | 3 | 233 | 1.73e-14 | 73.9 |
MS.gene84597.t1 | MTR_1g115450 | 40.000 | 90 | 49 | 1 | 7 | 96 | 2 | 86 | 6.48e-14 | 69.7 |
MS.gene84597.t1 | MTR_1g115470 | 42.857 | 91 | 47 | 1 | 12 | 102 | 6 | 91 | 2.27e-13 | 73.2 |
MS.gene84597.t1 | MTR_1g115435 | 27.347 | 245 | 143 | 9 | 7 | 245 | 2 | 217 | 5.35e-12 | 66.2 |
MS.gene84597.t1 | MTR_0150s0030 | 37.363 | 91 | 51 | 2 | 6 | 95 | 2 | 87 | 1.81e-11 | 64.3 |
MS.gene84597.t1 | MTR_7g063850 | 24.675 | 231 | 137 | 9 | 15 | 231 | 69 | 276 | 3.09e-11 | 65.1 |
MS.gene84597.t1 | MTR_7g063760 | 43.939 | 66 | 36 | 1 | 388 | 452 | 2 | 67 | 5.46e-11 | 59.3 |
MS.gene84597.t1 | MTR_8g044880 | 37.113 | 97 | 55 | 2 | 6 | 101 | 2 | 93 | 5.66e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84597.t1 | AT3G09140 | 31.176 | 510 | 284 | 16 | 1 | 456 | 1 | 497 | 3.77e-59 | 207 |
MS.gene84597.t1 | AT3G09140 | 29.478 | 536 | 287 | 16 | 1 | 456 | 1 | 525 | 3.68e-55 | 197 |
MS.gene84597.t1 | AT5G01120 | 30.083 | 482 | 285 | 11 | 13 | 448 | 10 | 485 | 4.34e-55 | 196 |
MS.gene84597.t1 | AT5G01150 | 30.247 | 486 | 285 | 12 | 12 | 455 | 9 | 482 | 2.49e-54 | 194 |
MS.gene84597.t1 | AT5G01140 | 29.079 | 478 | 291 | 9 | 12 | 464 | 9 | 463 | 4.55e-54 | 192 |
MS.gene84597.t1 | AT5G43240 | 29.651 | 516 | 299 | 14 | 13 | 477 | 10 | 512 | 1.03e-49 | 181 |
MS.gene84597.t1 | AT5G43240 | 29.651 | 516 | 299 | 14 | 13 | 477 | 10 | 512 | 1.03e-49 | 181 |
MS.gene84597.t1 | AT5G43240 | 29.651 | 516 | 299 | 14 | 13 | 477 | 10 | 512 | 1.03e-49 | 181 |
MS.gene84597.t1 | AT3G09110 | 32.817 | 323 | 201 | 7 | 12 | 327 | 9 | 322 | 1.81e-48 | 174 |
MS.gene84597.t1 | AT5G01130 | 30.608 | 477 | 273 | 14 | 1 | 452 | 1 | 444 | 5.05e-47 | 172 |
MS.gene84597.t1 | AT3G09120 | 31.646 | 316 | 199 | 7 | 11 | 316 | 5 | 313 | 4.31e-39 | 147 |
MS.gene84597.t1 | AT5G37320 | 27.545 | 501 | 295 | 19 | 3 | 455 | 2 | 482 | 7.61e-38 | 147 |
MS.gene84597.t1 | AT5G43240 | 28.485 | 330 | 183 | 10 | 163 | 448 | 25 | 345 | 4.77e-21 | 95.9 |
Find 116 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAGCACCATTAACGTTTA+TGG | 0.174129 | 7.3:+39276578 | MS.gene84597:CDS |
CAATGTTCAGTTTCATATTC+TGG | 0.191679 | 7.3:-39275642 | None:intergenic |
CAATTTCATTACTCAAATTC+TGG | 0.194815 | 7.3:-39275795 | None:intergenic |
GATCCTAAATCCCCTATTTC+TGG | 0.194829 | 7.3:+39276546 | MS.gene84597:CDS |
CTAGCATATCCTCCAGAAAT+AGG | 0.222209 | 7.3:-39276558 | None:intergenic |
CAGAATTTGAGTAATGAAAT+TGG | 0.244591 | 7.3:+39275796 | MS.gene84597:CDS |
TGAGCACCTGCTGAGTTTCT+TGG | 0.253622 | 7.3:-39275616 | None:intergenic |
CCTCCAGAAATAGGGGATTT+AGG | 0.261981 | 7.3:-39276549 | None:intergenic |
AAGAAAAGATACCTCTTTCT+TGG | 0.262602 | 7.3:-39275965 | None:intergenic |
AACAGTACTTTGTTTGAGTT+TGG | 0.269045 | 7.3:-39279874 | None:intergenic |
CAAGGTTACCATTAGAGTTT+TGG | 0.279997 | 7.3:+39275366 | MS.gene84597:CDS |
TGATCTTCTCAAATTGTCTT+TGG | 0.284928 | 7.3:+39276080 | MS.gene84597:CDS |
GATACCTTGTAACGATTATA+AGG | 0.318916 | 7.3:+39276497 | MS.gene84597:CDS |
GAGGAAATTGTCGTTAATAT+TGG | 0.320848 | 7.3:+39276687 | MS.gene84597:CDS |
CTTGGTGATGTTGATATTAA+CGG | 0.332558 | 7.3:-39275947 | None:intergenic |
AAAGTTGTCGTAACAACATT+TGG | 0.340302 | 7.3:-39275871 | None:intergenic |
AATACTGTGTAAGTTTCTTC+AGG | 0.340897 | 7.3:+39275728 | MS.gene84597:CDS |
CGCCAAAACTTTGTTGGTGT+TGG | 0.343224 | 7.3:-39280038 | None:intergenic |
TCCCAACACCAACAAAGTTT+TGG | 0.348303 | 7.3:+39280036 | MS.gene84597:CDS |
GAGAACAAGACTTGCAGAAT+TGG | 0.357185 | 7.3:+39275700 | MS.gene84597:CDS |
TCAAAATTTGCTTTGACAAA+CGG | 0.362323 | 7.3:+39276838 | MS.gene84597:CDS |
TAGCATATCCTCCAGAAATA+GGG | 0.363628 | 7.3:-39276557 | None:intergenic |
TCCAACCATAGCTTCATATC+TGG | 0.364682 | 7.3:-39279743 | None:intergenic |
GAACTTCCGCCACCACTATA+CGG | 0.369037 | 7.3:+39279791 | MS.gene84597:CDS |
TTAACCTCCATTCGGTTACT+TGG | 0.371862 | 7.3:-39276165 | None:intergenic |
ATCACATTGTTTGTGATAGT+TGG | 0.377421 | 7.3:-39279903 | None:intergenic |
TAAATTATCAATGCAGCTTA+AGG | 0.378298 | 7.3:-39276358 | None:intergenic |
AACCACCATCAACATAGATT+TGG | 0.380923 | 7.3:-39278034 | None:intergenic |
GCCAAAACTTTGTTGGTGTT+GGG | 0.390181 | 7.3:-39280037 | None:intergenic |
AACGGCCTCAACCAGTTCAT+TGG | 0.391379 | 7.3:+39276856 | MS.gene84597:CDS |
GCTTCTTAACATTGCGCTTA+GGG | 0.394593 | 7.3:+39275455 | MS.gene84597:CDS |
TAGTCTTCTCACCTTTCCCT+TGG | 0.396323 | 7.3:+39276302 | MS.gene84597:CDS |
TCAAATTCTGGAATTCTTCT+CGG | 0.402305 | 7.3:-39275783 | None:intergenic |
TTAAATCTCCTTCAGAAGCT+TGG | 0.404186 | 7.3:+39275892 | MS.gene84597:CDS |
AACCGAATGGAGGTTAATAT+TGG | 0.408331 | 7.3:+39276171 | MS.gene84597:CDS |
GGCAGGAAGTAGATCTGTTC+AGG | 0.408889 | 7.3:+39277314 | MS.gene84597:intron |
GAGATTCGCCAAAACTTTGT+TGG | 0.411361 | 7.3:-39280044 | None:intergenic |
TCTGTCACCATAAACGTTAA+TGG | 0.411866 | 7.3:-39276585 | None:intergenic |
TACAAGGTATCGGTAATATC+TGG | 0.416442 | 7.3:-39276485 | None:intergenic |
AGCTTCTTAACATTGCGCTT+AGG | 0.417921 | 7.3:+39275454 | MS.gene84597:CDS |
AGTCTTCTCACCTTTCCCTT+GGG | 0.418372 | 7.3:+39276303 | MS.gene84597:CDS |
ATCAACCAAATCTATGTTGA+TGG | 0.421611 | 7.3:+39278029 | MS.gene84597:CDS |
AAGATATGAAATACCATCAA+TGG | 0.434003 | 7.3:-39276634 | None:intergenic |
TACTATACTAACCAATGAAC+TGG | 0.434085 | 7.3:-39276867 | None:intergenic |
AAATGCTTGGAATAGTTAGT+AGG | 0.436434 | 7.3:-39276440 | None:intergenic |
CTTGTCCACCAAAACTCTAA+TGG | 0.440326 | 7.3:-39275374 | None:intergenic |
TGAGCTCAGAAAAGTGCTTA+AGG | 0.445205 | 7.3:+39276400 | MS.gene84597:CDS |
CCACCTCCTCTTGTTTCGAA+TGG | 0.449856 | 7.3:+39279971 | MS.gene84597:CDS |
TCTATTTGCTGAGGCAGATA+AGG | 0.457603 | 7.3:+39275411 | MS.gene84597:CDS |
AAAGGAAGAATCTAACGAAA+TGG | 0.460633 | 7.3:+39276200 | MS.gene84597:CDS |
TACCAATATTAACCTCCATT+CGG | 0.462117 | 7.3:-39276173 | None:intergenic |
CACATTGTGTACCAACAATC+TGG | 0.462685 | 7.3:-39277933 | None:intergenic |
CAGAAATAACGTCACTTACA+AGG | 0.471169 | 7.3:+39277977 | MS.gene84597:CDS |
CGCAGATTGAATCCGTATAG+TGG | 0.478916 | 7.3:-39279803 | None:intergenic |
ATTTCCTCCACATCATTAAG+TGG | 0.479406 | 7.3:-39276672 | None:intergenic |
ATGAAGCTATGGTTGGAGCT+AGG | 0.480465 | 7.3:+39279749 | MS.gene84597:CDS |
CTTACCTTATAATCGTTACA+AGG | 0.487269 | 7.3:-39276501 | None:intergenic |
ACTCCAATGCCATCCATTGA+TGG | 0.490084 | 7.3:+39276621 | MS.gene84597:CDS |
GTTCGTGAGTTCAGACTGTA+TGG | 0.490803 | 7.3:-39276463 | None:intergenic |
GGTTAATATTGGTAAAGAAA+AGG | 0.492157 | 7.3:+39276182 | MS.gene84597:CDS |
AGGAATCAGAAATGTATTTG+TGG | 0.500975 | 7.3:+39275748 | MS.gene84597:CDS |
CTTCTCACCTTTCCCTTGGG+AGG | 0.505145 | 7.3:+39276306 | MS.gene84597:CDS |
GCATTGGAGTCACAACCAAC+TGG | 0.508849 | 7.3:-39276608 | None:intergenic |
CAAGACCAAGGCCAGATTGT+TGG | 0.515955 | 7.3:+39277922 | MS.gene84597:CDS |
CATCCAGCAGTATCATCATT+AGG | 0.516253 | 7.3:-39277847 | None:intergenic |
GATCTTGTTTATTGAAGCAG+AGG | 0.517035 | 7.3:+39276257 | MS.gene84597:CDS |
CAGCCTAATGATGATACTGC+TGG | 0.517497 | 7.3:+39277844 | MS.gene84597:intron |
TGAAGCTATGGTTGGAGCTA+GGG | 0.520942 | 7.3:+39279750 | MS.gene84597:CDS |
TAACCTCCATTCGGTTACTT+GGG | 0.521189 | 7.3:-39276164 | None:intergenic |
GTGTACCAACAATCTGGCCT+TGG | 0.521461 | 7.3:-39277927 | None:intergenic |
TATCAACATCACCAAGAAAG+AGG | 0.532453 | 7.3:+39275954 | MS.gene84597:CDS |
TCAGACTGTATGGAAATGCT+TGG | 0.540758 | 7.3:-39276453 | None:intergenic |
CTTGTTCTCACAGCAGAAGT+AGG | 0.541416 | 7.3:-39275686 | None:intergenic |
ATACCATCAATGGATGGCAT+TGG | 0.542259 | 7.3:-39276624 | None:intergenic |
TCCAGATATGAAGCTATGGT+TGG | 0.543618 | 7.3:+39279742 | MS.gene84597:CDS |
ATAGCTTCATATCTGGAACT+TGG | 0.550486 | 7.3:-39279736 | None:intergenic |
GGAGCTAGGGCGAAGAACAT+TGG | 0.555509 | 7.3:+39279763 | MS.gene84597:CDS |
CCATTCGAAACAAGAGGAGG+TGG | 0.555852 | 7.3:-39279971 | None:intergenic |
TTATAATCGTTACAAGGTAT+CGG | 0.556667 | 7.3:-39276495 | None:intergenic |
TGTCGTTAATATTGGCCTGA+AGG | 0.557303 | 7.3:+39276695 | MS.gene84597:CDS |
CATTGACTCCAAGCTTCTGA+AGG | 0.561296 | 7.3:-39275900 | None:intergenic |
AATGATGATACTGCTGGATG+TGG | 0.562722 | 7.3:+39277850 | MS.gene84597:CDS |
TTTAGTCCCAAGTAACCGAA+TGG | 0.566006 | 7.3:+39276158 | MS.gene84597:CDS |
ATCAATCCAAGAAACTCAGC+AGG | 0.567136 | 7.3:+39275610 | MS.gene84597:CDS |
ACTAACCAATGAACTGGTTG+AGG | 0.567961 | 7.3:-39276861 | None:intergenic |
AAGTTCCAGATATGAAGCTA+TGG | 0.571163 | 7.3:+39279738 | MS.gene84597:CDS |
TTGAATCCGTATAGTGGTGG+CGG | 0.572563 | 7.3:-39279797 | None:intergenic |
TAACACTCCTCCCAAGGGAA+AGG | 0.572666 | 7.3:-39276313 | None:intergenic |
AGCATATCCTCCAGAAATAG+GGG | 0.573043 | 7.3:-39276556 | None:intergenic |
CTCAGCAAAACAAGTAGACA+AGG | 0.581182 | 7.3:+39275348 | MS.gene84597:CDS |
GCTTCATATCTGGAACTTGG+TGG | 0.581888 | 7.3:-39279733 | None:intergenic |
TCTCACAGCAGAAGTAGGAC+TGG | 0.581921 | 7.3:-39275681 | None:intergenic |
CATATGTAACACTCCTCCCA+AGG | 0.585037 | 7.3:-39276319 | None:intergenic |
CGTTAATATTGGCCTGAAGG+AGG | 0.600026 | 7.3:+39276698 | MS.gene84597:CDS |
TATGAAATACCATCAATGGA+TGG | 0.601386 | 7.3:-39276630 | None:intergenic |
AAATAAAGTTCTATTTGCTG+AGG | 0.602370 | 7.3:+39275402 | MS.gene84597:CDS |
GTTTATGGTGACAGACCAGT+TGG | 0.602694 | 7.3:+39276593 | MS.gene84597:CDS |
AGGGACCATTGCAAAACTTG+TGG | 0.604088 | 7.3:+39275474 | MS.gene84597:CDS |
GAACGTCCCACTTAATGATG+TGG | 0.609331 | 7.3:+39276665 | MS.gene84597:CDS |
ACAGCAGAAGTAGGACTGGA+AGG | 0.610171 | 7.3:-39275677 | None:intergenic |
GATTCGCCATTCGAAACAAG+AGG | 0.611339 | 7.3:-39279977 | None:intergenic |
AAGCTTGGAGTCAATGACAT+TGG | 0.612687 | 7.3:+39275907 | MS.gene84597:CDS |
CGTCCCACTTAATGATGTGG+AGG | 0.619494 | 7.3:+39276668 | MS.gene84597:CDS |
TTAAATATAAAGTCTGACAG+AGG | 0.620186 | 7.3:-39276114 | None:intergenic |
ACAAGAGGAGGTGGAACTCG+CGG | 0.624056 | 7.3:-39279962 | None:intergenic |
TTTCCTCCACATCATTAAGT+GGG | 0.624477 | 7.3:-39276671 | None:intergenic |
CCTAAATCCCCTATTTCTGG+AGG | 0.628731 | 7.3:+39276549 | MS.gene84597:CDS |
AGTCCCAAGTAACCGAATGG+AGG | 0.634833 | 7.3:+39276161 | MS.gene84597:CDS |
AGATTGAATCCGTATAGTGG+TGG | 0.662110 | 7.3:-39279800 | None:intergenic |
ATATGTAACACTCCTCCCAA+GGG | 0.664294 | 7.3:-39276318 | None:intergenic |
ATGTGTTGAATGTTGCAAGA+AGG | 0.665559 | 7.3:+39277951 | MS.gene84597:CDS |
AAAGTTGAAGGTCAAGACCA+AGG | 0.676584 | 7.3:+39277910 | MS.gene84597:CDS |
GGAGTGTTACATATGCTCGA+AGG | 0.683354 | 7.3:+39276327 | MS.gene84597:CDS |
TCTATGGTCACAGACATGCA+AGG | 0.694458 | 7.3:+39275579 | MS.gene84597:CDS |
TTTGGCGAATCTCATGACAA+GGG | 0.701133 | 7.3:+39280054 | MS.gene84597:CDS |
TCGCCATTCGAAACAAGAGG+AGG | 0.708171 | 7.3:-39279974 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGTTATAATTATTATGT+AGG | - | chr7.3:39276914-39276933 | None:intergenic | 10.0% |
!!! | AATTTTCAAAAGTTTCAAAT+TGG | - | chr7.3:39278432-39278451 | None:intergenic | 15.0% |
!!! | TTGAAACTTTTGAAAATTAA+AGG | + | chr7.3:39278434-39278453 | MS.gene84597:intron | 15.0% |
!! | AAAAAATCAACAAAAGTTGA+AGG | + | chr7.3:39277898-39277917 | MS.gene84597:CDS | 20.0% |
!! | AAACAAGTTATTAGTTAGAA+TGG | - | chr7.3:39277810-39277829 | None:intergenic | 20.0% |
!! | AAATAATTAGTTAGAGAAGT+TGG | - | chr7.3:39278690-39278709 | None:intergenic | 20.0% |
!! | AACAAGTTATTAGTTAGAAT+GGG | - | chr7.3:39277809-39277828 | None:intergenic | 20.0% |
!! | AATACATGAATTTGGTAAAA+AGG | - | chr7.3:39277562-39277581 | None:intergenic | 20.0% |
!! | ATATCATCACTTTAAATTGT+TGG | - | chr7.3:39278100-39278119 | None:intergenic | 20.0% |
!! | ATCTTGATGAAAAATATCTA+TGG | + | chr7.3:39275563-39275582 | MS.gene84597:CDS | 20.0% |
!! | ATGAATAGTAGTTGAATTAA+AGG | - | chr7.3:39278786-39278805 | None:intergenic | 20.0% |
!! | GAAATGATTTACAAACTAAA+AGG | + | chr7.3:39278405-39278424 | MS.gene84597:intron | 20.0% |
!! | TAACGATAATTATATAACTG+AGG | - | chr7.3:39277606-39277625 | None:intergenic | 20.0% |
!! | TATAATTATTATGTAGGATG+AGG | - | chr7.3:39276908-39276927 | None:intergenic | 20.0% |
!!! | ATTTTTGTGTTTGAAATATG+TGG | + | chr7.3:39277412-39277431 | MS.gene84597:intron | 20.0% |
!!! | CTTCAATATGTTGTTTAAAT+AGG | + | chr7.3:39276053-39276072 | MS.gene84597:intron | 20.0% |
!!! | TAATGAAATTGGTTTTGTTA+AGG | + | chr7.3:39275807-39275826 | MS.gene84597:CDS | 20.0% |
! | AAAAATTCAGACTATAACTC+CGG | + | chr7.3:39279635-39279654 | MS.gene84597:intron | 25.0% |
! | AAGATATGAAATACCATCAA+TGG | - | chr7.3:39276637-39276656 | None:intergenic | 25.0% |
! | AAGTGATGATATACATATGA+TGG | + | chr7.3:39278108-39278127 | MS.gene84597:intron | 25.0% |
! | ATCGTAACAGAAAACAATTA+TGG | - | chr7.3:39279690-39279709 | None:intergenic | 25.0% |
! | CAAACACAAAAATAGAAACA+TGG | - | chr7.3:39277405-39277424 | None:intergenic | 25.0% |
! | CAATTTCATTACTCAAATTC+TGG | - | chr7.3:39275798-39275817 | None:intergenic | 25.0% |
! | CAGAATTTGAGTAATGAAAT+TGG | + | chr7.3:39275796-39275815 | MS.gene84597:CDS | 25.0% |
! | GAAAATTAAAGGACTAACTT+GGG | + | chr7.3:39278445-39278464 | MS.gene84597:intron | 25.0% |
! | GGTTAATATTGGTAAAGAAA+AGG | + | chr7.3:39276182-39276201 | MS.gene84597:CDS | 25.0% |
! | GTGATCAAAATACATGAATT+TGG | - | chr7.3:39277570-39277589 | None:intergenic | 25.0% |
! | TAAATTATCAATGCAGCTTA+AGG | - | chr7.3:39276361-39276380 | None:intergenic | 25.0% |
! | TAAGTGAATTGCAATTCTAT+TGG | + | chr7.3:39278593-39278612 | MS.gene84597:intron | 25.0% |
! | TAGAAAAAGAAGAGAAGTAA+AGG | + | chr7.3:39277193-39277212 | MS.gene84597:intron | 25.0% |
! | TGAAAATTAAAGGACTAACT+TGG | + | chr7.3:39278444-39278463 | MS.gene84597:intron | 25.0% |
! | TGAACATGCACATATAATAA+AGG | - | chr7.3:39277293-39277312 | None:intergenic | 25.0% |
! | TTAAATATAAAGTCTGACAG+AGG | - | chr7.3:39276117-39276136 | None:intergenic | 25.0% |
! | TTATAATCGTTACAAGGTAT+CGG | - | chr7.3:39276498-39276517 | None:intergenic | 25.0% |
! | TTATCGTTATTTATGTGACA+AGG | + | chr7.3:39277617-39277636 | MS.gene84597:intron | 25.0% |
! | TTATTATATGTGCATGTTCA+TGG | + | chr7.3:39277293-39277312 | MS.gene84597:intron | 25.0% |
!! | AAATAAAGTTCTATTTGCTG+AGG | + | chr7.3:39275402-39275421 | MS.gene84597:CDS | 25.0% |
!! | GAGTTATAGTCTGAATTTTT+GGG | - | chr7.3:39279635-39279654 | None:intergenic | 25.0% |
!! | TCAAAATTTGCTTTGACAAA+CGG | + | chr7.3:39276838-39276857 | MS.gene84597:CDS | 25.0% |
!! | TTTTTCATTGCTCTTAATCT+TGG | - | chr7.3:39278010-39278029 | None:intergenic | 25.0% |
!!! | AATTTTTGGGAATAATGTAG+TGG | - | chr7.3:39279622-39279641 | None:intergenic | 25.0% |
AAAGGAAGAATCTAACGAAA+TGG | + | chr7.3:39276200-39276219 | MS.gene84597:CDS | 30.0% | |
AAAGGAATTGAGAAATTGAG+AGG | + | chr7.3:39278561-39278580 | MS.gene84597:intron | 30.0% | |
AAAGTTGTCGTAACAACATT+TGG | - | chr7.3:39275874-39275893 | None:intergenic | 30.0% | |
AAATGCTTGGAATAGTTAGT+AGG | - | chr7.3:39276443-39276462 | None:intergenic | 30.0% | |
AAGAAAAGATACCTCTTTCT+TGG | - | chr7.3:39275968-39275987 | None:intergenic | 30.0% | |
AAGGAATTGAGAAATTGAGA+GGG | + | chr7.3:39278562-39278581 | MS.gene84597:intron | 30.0% | |
AATACTGTGTAAGTTTCTTC+AGG | + | chr7.3:39275728-39275747 | MS.gene84597:CDS | 30.0% | |
AATGAATGGTACCCATATAT+GGG | + | chr7.3:39277091-39277110 | MS.gene84597:intron | 30.0% | |
AATTCATCTTCTTGTTCTGA+GGG | + | chr7.3:39279277-39279296 | MS.gene84597:intron | 30.0% | |
AGGAATCAGAAATGTATTTG+TGG | + | chr7.3:39275748-39275767 | MS.gene84597:CDS | 30.0% | |
ATATGAACATCCCCATATAT+GGG | - | chr7.3:39277105-39277124 | None:intergenic | 30.0% | |
ATCAACCAAATCTATGTTGA+TGG | + | chr7.3:39278029-39278048 | MS.gene84597:CDS | 30.0% | |
ATCACATTGTTTGTGATAGT+TGG | - | chr7.3:39279906-39279925 | None:intergenic | 30.0% | |
ATGGAAGTTTAATAGATCCA+TGG | - | chr7.3:39277776-39277795 | None:intergenic | 30.0% | |
CAACCACAAGAAATCAAATA+TGG | - | chr7.3:39276785-39276804 | None:intergenic | 30.0% | |
CAATGTTCAGTTTCATATTC+TGG | - | chr7.3:39275645-39275664 | None:intergenic | 30.0% | |
CAATTTAAACAGATAACCTG+TGG | + | chr7.3:39279198-39279217 | MS.gene84597:intron | 30.0% | |
CGATAATTATATAACTGAGG+TGG | - | chr7.3:39277603-39277622 | None:intergenic | 30.0% | |
CTAATAAGACATGACAATAG+AGG | - | chr7.3:39277523-39277542 | None:intergenic | 30.0% | |
CTTACCTTATAATCGTTACA+AGG | - | chr7.3:39276504-39276523 | None:intergenic | 30.0% | |
GAAATATGCAAAAGAAGTCA+TGG | - | chr7.3:39279470-39279489 | None:intergenic | 30.0% | |
GAGGAAATTGTCGTTAATAT+TGG | + | chr7.3:39276687-39276706 | MS.gene84597:CDS | 30.0% | |
GATAAGTCTGCTATAAATCT+AGG | - | chr7.3:39279007-39279026 | None:intergenic | 30.0% | |
GATACCTTGTAACGATTATA+AGG | + | chr7.3:39276497-39276516 | MS.gene84597:CDS | 30.0% | |
GTAACAGAAAACAATTATGG+CGG | - | chr7.3:39279687-39279706 | None:intergenic | 30.0% | |
TAATTAGTTAGAGAAGTTGG+TGG | - | chr7.3:39278687-39278706 | None:intergenic | 30.0% | |
TACCAATATTAACCTCCATT+CGG | - | chr7.3:39276176-39276195 | None:intergenic | 30.0% | |
TACTATACTAACCAATGAAC+TGG | - | chr7.3:39276870-39276889 | None:intergenic | 30.0% | |
TACTTCTTGAGAAAGACTAA+GGG | + | chr7.3:39277488-39277507 | MS.gene84597:intron | 30.0% | |
TAGTACTACACATAACAAGT+CGG | - | chr7.3:39277054-39277073 | None:intergenic | 30.0% | |
TATGAAATACCATCAATGGA+TGG | - | chr7.3:39276633-39276652 | None:intergenic | 30.0% | |
TATGTATTCTTCTTCACATG+AGG | + | chr7.3:39279123-39279142 | MS.gene84597:intron | 30.0% | |
TGATCTTCTCAAATTGTCTT+TGG | + | chr7.3:39276080-39276099 | MS.gene84597:CDS | 30.0% | |
TGTGAAGAAGAATACATATC+TGG | - | chr7.3:39279121-39279140 | None:intergenic | 30.0% | |
TTACTTCTTGAGAAAGACTA+AGG | + | chr7.3:39277487-39277506 | MS.gene84597:intron | 30.0% | |
! | AACAGTACTTTGTTTGAGTT+TGG | - | chr7.3:39279877-39279896 | None:intergenic | 30.0% |
! | ATACATATCTGGTTCATATG+CGG | - | chr7.3:39279110-39279129 | None:intergenic | 30.0% |
! | CTCTAAGGAACTAAAATGAA+AGG | + | chr7.3:39278543-39278562 | MS.gene84597:intron | 30.0% |
! | GGAGTTATAGTCTGAATTTT+TGG | - | chr7.3:39279636-39279655 | None:intergenic | 30.0% |
! | GTAACAACTGATTCAATATC+TGG | - | chr7.3:39277728-39277747 | None:intergenic | 30.0% |
! | GTTTGTCAAAGCAAATTTTG+AGG | - | chr7.3:39276839-39276858 | None:intergenic | 30.0% |
! | TCACCATATTTGATTTCTTG+TGG | + | chr7.3:39276779-39276798 | MS.gene84597:intron | 30.0% |
! | TGAATTAAAGGAGCATACAA+TGG | - | chr7.3:39278774-39278793 | None:intergenic | 30.0% |
! | TGTGTAGTACTAATTTTCCA+TGG | + | chr7.3:39277062-39277081 | MS.gene84597:intron | 30.0% |
! | TTCTACCTTTTGCATCTTTA+GGG | - | chr7.3:39277364-39277383 | None:intergenic | 30.0% |
! | TTTCTACCTTTTGCATCTTT+AGG | - | chr7.3:39277365-39277384 | None:intergenic | 30.0% |
!! | CTTGGTGATGTTGATATTAA+CGG | - | chr7.3:39275950-39275969 | None:intergenic | 30.0% |
!! | TCAAATTCTGGAATTCTTCT+CGG | - | chr7.3:39275786-39275805 | None:intergenic | 30.0% |
!!! | AATTTTGAAGCATTGAGCTT+TGG | + | chr7.3:39275508-39275527 | MS.gene84597:CDS | 30.0% |
!!! | ACAGTTGTGAGATTTTGATT+CGG | - | chr7.3:39280010-39280029 | None:intergenic | 30.0% |
!!! | ATAGACATGTTTTTAGACCT+TGG | - | chr7.3:39278838-39278857 | None:intergenic | 30.0% |
!!! | GTTGATTTTTTGTTGTCTGA+AGG | - | chr7.3:39277889-39277908 | None:intergenic | 30.0% |
!!! | TAGACATGTTTTTAGACCTT+GGG | - | chr7.3:39278837-39278856 | None:intergenic | 30.0% |
!!! | TGGTTTTGTTAAGGAAATGT+CGG | + | chr7.3:39275816-39275835 | MS.gene84597:CDS | 30.0% |
AAAGGCAAAAGATGCAAACT+AGG | - | chr7.3:39278287-39278306 | None:intergenic | 35.0% | |
AACACATCTGCTCTATTCAA+GGG | - | chr7.3:39278333-39278352 | None:intergenic | 35.0% | |
AACCACCATCAACATAGATT+TGG | - | chr7.3:39278037-39278056 | None:intergenic | 35.0% | |
AACCGAATGGAGGTTAATAT+TGG | + | chr7.3:39276171-39276190 | MS.gene84597:CDS | 35.0% | |
AAGTCATGGAAAGTTCGATA+TGG | - | chr7.3:39279456-39279475 | None:intergenic | 35.0% | |
AAGTTCCAGATATGAAGCTA+TGG | + | chr7.3:39279738-39279757 | MS.gene84597:CDS | 35.0% | |
ACTTCTTGAGAAAGACTAAG+GGG | + | chr7.3:39277489-39277508 | MS.gene84597:intron | 35.0% | |
AGGAAGAAAGATTGAACGAA+AGG | + | chr7.3:39277213-39277232 | MS.gene84597:intron | 35.0% | |
ATCAGTTGTTACTGAATGAG+AGG | + | chr7.3:39277736-39277755 | MS.gene84597:intron | 35.0% | |
ATCTGTTTAACAGAGACTGA+CGG | + | chr7.3:39278369-39278388 | MS.gene84597:intron | 35.0% | |
ATGAATGGTACCCATATATG+GGG | + | chr7.3:39277092-39277111 | MS.gene84597:intron | 35.0% | |
ATGTGTTGAATGTTGCAAGA+AGG | + | chr7.3:39277951-39277970 | MS.gene84597:CDS | 35.0% | |
ATTTCCTCCACATCATTAAG+TGG | - | chr7.3:39276675-39276694 | None:intergenic | 35.0% | |
CAACTGCTTCAATCTCAAAA+AGG | - | chr7.3:39278305-39278324 | None:intergenic | 35.0% | |
CAATGAATGGTACCCATATA+TGG | + | chr7.3:39277090-39277109 | MS.gene84597:intron | 35.0% | |
CAGAAATAACGTCACTTACA+AGG | + | chr7.3:39277977-39277996 | MS.gene84597:CDS | 35.0% | |
CATATGAACATCCCCATATA+TGG | - | chr7.3:39277106-39277125 | None:intergenic | 35.0% | |
CATATGATCTTAGGGTAATG+AGG | + | chr7.3:39277120-39277139 | MS.gene84597:intron | 35.0% | |
CTCTAATTTCTTAGTGCTCA+AGG | - | chr7.3:39279171-39279190 | None:intergenic | 35.0% | |
CTTGCGCTCACAAAAAATAA+AGG | - | chr7.3:39278509-39278528 | None:intergenic | 35.0% | |
GAAACTAAAAGGACCAAAAG+TGG | + | chr7.3:39278476-39278495 | MS.gene84597:intron | 35.0% | |
GAATTCATCTTCTTGTTCTG+AGG | + | chr7.3:39279276-39279295 | MS.gene84597:intron | 35.0% | |
GATTGCAGACATACTAACTA+AGG | - | chr7.3:39278869-39278888 | None:intergenic | 35.0% | |
GGGAATTCTGTGAAACTAAA+AGG | + | chr7.3:39278465-39278484 | MS.gene84597:intron | 35.0% | |
GGGATGTTCATATGATCTTA+GGG | + | chr7.3:39277112-39277131 | MS.gene84597:intron | 35.0% | |
GTTCCTAGAAAATGTCACAT+GGG | - | chr7.3:39279304-39279323 | None:intergenic | 35.0% | |
TACCATTCATTGCATTTCCA+TGG | - | chr7.3:39277082-39277101 | None:intergenic | 35.0% | |
TAGCATATCCTCCAGAAATA+GGG | - | chr7.3:39276560-39276579 | None:intergenic | 35.0% | |
TAGTTAGAATGGGAGAATGA+GGG | - | chr7.3:39277799-39277818 | None:intergenic | 35.0% | |
TATCAACATCACCAAGAAAG+AGG | + | chr7.3:39275954-39275973 | MS.gene84597:CDS | 35.0% | |
TATGGTTGATTGTAGTCATG+TGG | - | chr7.3:39279438-39279457 | None:intergenic | 35.0% | |
TCTGTCACCATAAACGTTAA+TGG | - | chr7.3:39276588-39276607 | None:intergenic | 35.0% | |
TGTTCCTAGAAAATGTCACA+TGG | - | chr7.3:39279305-39279324 | None:intergenic | 35.0% | |
TGTTGTGTGACTGATATATG+TGG | + | chr7.3:39278190-39278209 | MS.gene84597:intron | 35.0% | |
TTAAATCTCCTTCAGAAGCT+TGG | + | chr7.3:39275892-39275911 | MS.gene84597:CDS | 35.0% | |
TTAGTTAGAATGGGAGAATG+AGG | - | chr7.3:39277800-39277819 | None:intergenic | 35.0% | |
TTCCATGGAAATGCAATGAA+TGG | + | chr7.3:39277077-39277096 | MS.gene84597:intron | 35.0% | |
TTTCCTCCACATCATTAAGT+GGG | - | chr7.3:39276674-39276693 | None:intergenic | 35.0% | |
! | AACCAAATCTATGTTGATGG+TGG | + | chr7.3:39278032-39278051 | MS.gene84597:intron | 35.0% |
! | AATAGAGCAGATGTGTTGTT+TGG | + | chr7.3:39278336-39278355 | MS.gene84597:intron | 35.0% |
! | ATAGCTTCATATCTGGAACT+TGG | - | chr7.3:39279739-39279758 | None:intergenic | 35.0% |
! | ATTAGCCACAAGTTTTGCAA+TGG | - | chr7.3:39275482-39275501 | None:intergenic | 35.0% |
! | ATTTGATTTCTTGTGGTTGC+AGG | + | chr7.3:39276786-39276805 | MS.gene84597:intron | 35.0% |
! | CAAGGTTACCATTAGAGTTT+TGG | + | chr7.3:39275366-39275385 | MS.gene84597:CDS | 35.0% |
! | GATCTTGTTTATTGAAGCAG+AGG | + | chr7.3:39276257-39276276 | MS.gene84597:CDS | 35.0% |
! | TAAAGGTCGAATACCACTTT+TGG | - | chr7.3:39278492-39278511 | None:intergenic | 35.0% |
! | TAGAGCACCATTAACGTTTA+TGG | + | chr7.3:39276578-39276597 | MS.gene84597:CDS | 35.0% |
! | TCTACCTTTTGCATCTTTAG+GGG | - | chr7.3:39277363-39277382 | None:intergenic | 35.0% |
! | TGAGAGTGATTTTGAATCAC+AGG | + | chr7.3:39278624-39278643 | MS.gene84597:intron | 35.0% |
! | TTTGATTTCTTGTGGTTGCA+GGG | + | chr7.3:39276787-39276806 | MS.gene84597:intron | 35.0% |
!! | GTTTATAAAAGAAGCACCAC+AGG | - | chr7.3:39279217-39279236 | None:intergenic | 35.0% |
!! | TACAAGGTATCGGTAATATC+TGG | - | chr7.3:39276488-39276507 | None:intergenic | 35.0% |
!! | TTTTGGGAATAATGTAGTGG+TGG | - | chr7.3:39279619-39279638 | None:intergenic | 35.0% |
!!! | ATGTAGGATGAGGTTTTGTT+TGG | - | chr7.3:39276898-39276917 | None:intergenic | 35.0% |
AAAGTCCTATTCTACATGGC+AGG | - | chr7.3:39278982-39279001 | None:intergenic | 40.0% | |
AAAGTTGAAGGTCAAGACCA+AGG | + | chr7.3:39277910-39277929 | MS.gene84597:CDS | 40.0% | |
AAGCTTGGAGTCAATGACAT+TGG | + | chr7.3:39275907-39275926 | MS.gene84597:CDS | 40.0% | |
AAGTCCTATTCTACATGGCA+GGG | - | chr7.3:39278981-39279000 | None:intergenic | 40.0% | |
AATGATGATACTGCTGGATG+TGG | + | chr7.3:39277850-39277869 | MS.gene84597:CDS | 40.0% | |
ACAGAAAACAATTATGGCGG+AGG | - | chr7.3:39279684-39279703 | None:intergenic | 40.0% | |
ACTAACCAATGAACTGGTTG+AGG | - | chr7.3:39276864-39276883 | None:intergenic | 40.0% | |
AGATTGAATCCGTATAGTGG+TGG | - | chr7.3:39279803-39279822 | None:intergenic | 40.0% | |
AGCATATCCTCCAGAAATAG+GGG | - | chr7.3:39276559-39276578 | None:intergenic | 40.0% | |
AGCTTCTTAACATTGCGCTT+AGG | + | chr7.3:39275454-39275473 | MS.gene84597:CDS | 40.0% | |
ATACCATCAATGGATGGCAT+TGG | - | chr7.3:39276627-39276646 | None:intergenic | 40.0% | |
ATATGTAACACTCCTCCCAA+GGG | - | chr7.3:39276321-39276340 | None:intergenic | 40.0% | |
ATCAATCCAAGAAACTCAGC+AGG | + | chr7.3:39275610-39275629 | MS.gene84597:CDS | 40.0% | |
CAACACATCTGCTCTATTCA+AGG | - | chr7.3:39278334-39278353 | None:intergenic | 40.0% | |
CACATTGTGTACCAACAATC+TGG | - | chr7.3:39277936-39277955 | None:intergenic | 40.0% | |
CATCCAGCAGTATCATCATT+AGG | - | chr7.3:39277850-39277869 | None:intergenic | 40.0% | |
CGTAACAAAAATGGTTACGC+CGG | - | chr7.3:39279657-39279676 | None:intergenic | 40.0% | |
CTAGCATATCCTCCAGAAAT+AGG | - | chr7.3:39276561-39276580 | None:intergenic | 40.0% | |
CTCAGCAAAACAAGTAGACA+AGG | + | chr7.3:39275348-39275367 | MS.gene84597:CDS | 40.0% | |
CTTGTCCACCAAAACTCTAA+TGG | - | chr7.3:39275377-39275396 | None:intergenic | 40.0% | |
GAGAACAAGACTTGCAGAAT+TGG | + | chr7.3:39275700-39275719 | MS.gene84597:CDS | 40.0% | |
GAGATTCGCCAAAACTTTGT+TGG | - | chr7.3:39280047-39280066 | None:intergenic | 40.0% | |
GATCCTAAATCCCCTATTTC+TGG | + | chr7.3:39276546-39276565 | MS.gene84597:CDS | 40.0% | |
GATGTGTTTCTTGCACTCTA+AGG | + | chr7.3:39278528-39278547 | MS.gene84597:intron | 40.0% | |
GCTTCTTAACATTGCGCTTA+GGG | + | chr7.3:39275455-39275474 | MS.gene84597:CDS | 40.0% | |
GGAGGAATGCGTAACAAAAA+TGG | - | chr7.3:39279666-39279685 | None:intergenic | 40.0% | |
GGCAAAAGTCCTATTCTACA+TGG | - | chr7.3:39278986-39279005 | None:intergenic | 40.0% | |
GGGAGCAAGTAAACAATGTT+AGG | - | chr7.3:39278924-39278943 | None:intergenic | 40.0% | |
GGGGATGTTCATATGATCTT+AGG | + | chr7.3:39277111-39277130 | MS.gene84597:intron | 40.0% | |
GGGGTAAATACATTGAAGCT+CGG | - | chr7.3:39278961-39278980 | None:intergenic | 40.0% | |
GTAACCACCTCTTATGTGTT+CGG | + | chr7.3:39277022-39277041 | MS.gene84597:intron | 40.0% | |
GTTACTACCGAACACATAAG+AGG | - | chr7.3:39277032-39277051 | None:intergenic | 40.0% | |
GTTGGCAATCAAGCATATTG+TGG | - | chr7.3:39278082-39278101 | None:intergenic | 40.0% | |
TAACCTCCATTCGGTTACTT+GGG | - | chr7.3:39276167-39276186 | None:intergenic | 40.0% | |
TATATGTGCATGTTCATGGC+AGG | + | chr7.3:39277297-39277316 | MS.gene84597:intron | 40.0% | |
TCAGACTGTATGGAAATGCT+TGG | - | chr7.3:39276456-39276475 | None:intergenic | 40.0% | |
TCCAACCATAGCTTCATATC+TGG | - | chr7.3:39279746-39279765 | None:intergenic | 40.0% | |
TCCAGATATGAAGCTATGGT+TGG | + | chr7.3:39279742-39279761 | MS.gene84597:CDS | 40.0% | |
TGATGTCAAGTTTCTTCCCA+AGG | + | chr7.3:39278818-39278837 | MS.gene84597:intron | 40.0% | |
TTAACCTCCATTCGGTTACT+TGG | - | chr7.3:39276168-39276187 | None:intergenic | 40.0% | |
TTAGTGCTCAAGGAAGTAAC+TGG | - | chr7.3:39279161-39279180 | None:intergenic | 40.0% | |
TTGGATCGAATCAGTGCTAA+AGG | - | chr7.3:39279074-39279093 | None:intergenic | 40.0% | |
TTTAGTCCCAAGTAACCGAA+TGG | + | chr7.3:39276158-39276177 | MS.gene84597:CDS | 40.0% | |
TTTGGCGAATCTCATGACAA+GGG | + | chr7.3:39280054-39280073 | MS.gene84597:CDS | 40.0% | |
! | AATAATGTAGTGGTGGTGCT+CGG | - | chr7.3:39279612-39279631 | None:intergenic | 40.0% |
! | AGCTCGGTTTTCACTTCTTA+AGG | - | chr7.3:39278945-39278964 | None:intergenic | 40.0% |
! | CTACCTTTTGCATCTTTAGG+GGG | - | chr7.3:39277362-39277381 | None:intergenic | 40.0% |
! | GCCAAAACTTTGTTGGTGTT+GGG | - | chr7.3:39280040-39280059 | None:intergenic | 40.0% |
! | GCTCGGTTTTCACTTCTTAA+GGG | - | chr7.3:39278944-39278963 | None:intergenic | 40.0% |
! | TCCCAACACCAACAAAGTTT+TGG | + | chr7.3:39280036-39280055 | MS.gene84597:CDS | 40.0% |
! | TCTATTTGCTGAGGCAGATA+AGG | + | chr7.3:39275411-39275430 | MS.gene84597:CDS | 40.0% |
! | TGTCGTTAATATTGGCCTGA+AGG | + | chr7.3:39276695-39276714 | MS.gene84597:CDS | 40.0% |
! | TTTTGGCGAATCTCATGACA+AGG | + | chr7.3:39280053-39280072 | MS.gene84597:CDS | 40.0% |
!! | ATGCGGCTTTTCAAGCTATT+TGG | - | chr7.3:39279093-39279112 | None:intergenic | 40.0% |
!! | GATGTGTTGTTTGGTTTGCT+TGG | + | chr7.3:39278345-39278364 | MS.gene84597:intron | 40.0% |
!! | GGTTACCATTAGAGTTTTGG+TGG | + | chr7.3:39275369-39275388 | MS.gene84597:CDS | 40.0% |
!! | TGAGCTCAGAAAAGTGCTTA+AGG | + | chr7.3:39276400-39276419 | MS.gene84597:CDS | 40.0% |
!!! | CTTGTCTACTTGTTTTGCTG+AGG | - | chr7.3:39275350-39275369 | None:intergenic | 40.0% |
AATAGATCCATGGTCACCCA+TGG | - | chr7.3:39277766-39277785 | None:intergenic | 45.0% | |
ACTACCGAACACATAAGAGG+TGG | - | chr7.3:39277029-39277048 | None:intergenic | 45.0% | |
ACTCCAATGCCATCCATTGA+TGG | + | chr7.3:39276621-39276640 | MS.gene84597:CDS | 45.0% | |
ACTGAATGAGAGGAAAGCCA+TGG | + | chr7.3:39277746-39277765 | MS.gene84597:intron | 45.0% | |
AGGAGAGCAAGCTTCTACAA+CGG | - | chr7.3:39279544-39279563 | None:intergenic | 45.0% | |
AGGGACCATTGCAAAACTTG+TGG | + | chr7.3:39275474-39275493 | MS.gene84597:CDS | 45.0% | |
AGTCCTATTCTACATGGCAG+GGG | - | chr7.3:39278980-39278999 | None:intergenic | 45.0% | |
AGTCTTCTCACCTTTCCCTT+GGG | + | chr7.3:39276303-39276322 | MS.gene84597:CDS | 45.0% | |
ATGAAGCTATGGTTGGAGCT+AGG | + | chr7.3:39279749-39279768 | MS.gene84597:CDS | 45.0% | |
CACACAACACATTCCATCCA+TGG | - | chr7.3:39278179-39278198 | None:intergenic | 45.0% | |
CAGCCTAATGATGATACTGC+TGG | + | chr7.3:39277844-39277863 | MS.gene84597:intron | 45.0% | |
CATATGTAACACTCCTCCCA+AGG | - | chr7.3:39276322-39276341 | None:intergenic | 45.0% | |
CATGCTTCTTTGATGCAGAC+TGG | - | chr7.3:39279252-39279271 | None:intergenic | 45.0% | |
CCTCCAGAAATAGGGGATTT+AGG | - | chr7.3:39276552-39276571 | None:intergenic | 45.0% | |
CGCAGATTGAATCCGTATAG+TGG | - | chr7.3:39279806-39279825 | None:intergenic | 45.0% | |
CGCCAAAACTTTGTTGGTGT+TGG | - | chr7.3:39280041-39280060 | None:intergenic | 45.0% | |
CTAGACTAGCAATCCATGGA+TGG | + | chr7.3:39278163-39278182 | MS.gene84597:intron | 45.0% | |
CTGAATGAGAGGAAAGCCAT+GGG | + | chr7.3:39277747-39277766 | MS.gene84597:intron | 45.0% | |
CTTGTTCTCACAGCAGAAGT+AGG | - | chr7.3:39275689-39275708 | None:intergenic | 45.0% | |
GAACGTCCCACTTAATGATG+TGG | + | chr7.3:39276665-39276684 | MS.gene84597:CDS | 45.0% | |
GATTCGCCATTCGAAACAAG+AGG | - | chr7.3:39279980-39279999 | None:intergenic | 45.0% | |
GTGTCTAGACTAGCAATCCA+TGG | + | chr7.3:39278159-39278178 | MS.gene84597:intron | 45.0% | |
GTTCGTGAGTTCAGACTGTA+TGG | - | chr7.3:39276466-39276485 | None:intergenic | 45.0% | |
GTTTATGGTGACAGACCAGT+TGG | + | chr7.3:39276593-39276612 | MS.gene84597:CDS | 45.0% | |
TAGAATGGGAGAATGAGGGA+TGG | - | chr7.3:39277795-39277814 | None:intergenic | 45.0% | |
TAGCCCCCTAAAGATGCAAA+AGG | + | chr7.3:39277356-39277375 | MS.gene84597:CDS | 45.0% | |
TAGTCTTCTCACCTTTCCCT+TGG | + | chr7.3:39276302-39276321 | MS.gene84597:CDS | 45.0% | |
TCATCACTCTGCAGTGTGAT+TGG | + | chr7.3:39279025-39279044 | MS.gene84597:intron | 45.0% | |
TCTATGGTCACAGACATGCA+AGG | + | chr7.3:39275579-39275598 | MS.gene84597:CDS | 45.0% | |
TGAAGCTATGGTTGGAGCTA+GGG | + | chr7.3:39279750-39279769 | MS.gene84597:CDS | 45.0% | |
TTAACAGAGACTGACGGCAA+CGG | + | chr7.3:39278375-39278394 | MS.gene84597:intron | 45.0% | |
TTACCCCTGCCATGTAGAAT+AGG | + | chr7.3:39278974-39278993 | MS.gene84597:intron | 45.0% | |
TTCTTTGATGCAGACTGGTG+TGG | - | chr7.3:39279247-39279266 | None:intergenic | 45.0% | |
TTGAATCCGTATAGTGGTGG+CGG | - | chr7.3:39279800-39279819 | None:intergenic | 45.0% | |
TTGGCCTGAAGGAGGTAAAA+GGG | + | chr7.3:39276706-39276725 | MS.gene84597:intron | 45.0% | |
! | AGATTGAACGAAAGGTGCGA+AGG | + | chr7.3:39277221-39277240 | MS.gene84597:intron | 45.0% |
! | ATTGGCCTGAAGGAGGTAAA+AGG | + | chr7.3:39276705-39276724 | MS.gene84597:intron | 45.0% |
! | CGTTAATATTGGCCTGAAGG+AGG | + | chr7.3:39276698-39276717 | MS.gene84597:CDS | 45.0% |
! | GCTTCATATCTGGAACTTGG+TGG | - | chr7.3:39279736-39279755 | None:intergenic | 45.0% |
! | GGACCCATGTGACATTTTCT+AGG | + | chr7.3:39279298-39279317 | MS.gene84597:intron | 45.0% |
! | GGAGTGTTACATATGCTCGA+AGG | + | chr7.3:39276327-39276346 | MS.gene84597:CDS | 45.0% |
!! | ACTTGGTGGCGAAACTATGA+AGG | - | chr7.3:39279722-39279741 | None:intergenic | 45.0% |
!! | CATTGACTCCAAGCTTCTGA+AGG | - | chr7.3:39275903-39275922 | None:intergenic | 45.0% |
!! | CCTAAATCCCCTATTTCTGG+AGG | + | chr7.3:39276549-39276568 | MS.gene84597:CDS | 45.0% |
AACGGCCTCAACCAGTTCAT+TGG | + | chr7.3:39276856-39276875 | MS.gene84597:CDS | 50.0% | |
ACAGCAGAAGTAGGACTGGA+AGG | - | chr7.3:39275680-39275699 | None:intergenic | 50.0% | |
AGAACGGTGTTCTGGTGTAG+AGG | - | chr7.3:39279564-39279583 | None:intergenic | 50.0% | |
AGAGCAAGCTTCTACAACGG+AGG | - | chr7.3:39279541-39279560 | None:intergenic | 50.0% | |
AGTCCCAAGTAACCGAATGG+AGG | + | chr7.3:39276161-39276180 | MS.gene84597:CDS | 50.0% | |
CAAGACCAAGGCCAGATTGT+TGG | + | chr7.3:39277922-39277941 | MS.gene84597:CDS | 50.0% | |
CCATTCGAAACAAGAGGAGG+TGG | - | chr7.3:39279974-39279993 | None:intergenic | 50.0% | |
CGTCCCACTTAATGATGTGG+AGG | + | chr7.3:39276668-39276687 | MS.gene84597:CDS | 50.0% | |
GAACTTCCGCCACCACTATA+CGG | + | chr7.3:39279791-39279810 | MS.gene84597:CDS | 50.0% | |
GCATTGGAGTCACAACCAAC+TGG | - | chr7.3:39276611-39276630 | None:intergenic | 50.0% | |
GGCAGGAAGTAGATCTGTTC+AGG | + | chr7.3:39277314-39277333 | MS.gene84597:intron | 50.0% | |
GTGTACCAACAATCTGGCCT+TGG | - | chr7.3:39277930-39277949 | None:intergenic | 50.0% | |
GTTAGAAATGGCATCCGTCG+CGG | - | chr7.3:39279590-39279609 | None:intergenic | 50.0% | |
TAACACTCCTCCCAAGGGAA+AGG | - | chr7.3:39276316-39276335 | None:intergenic | 50.0% | |
TCGCCATTCGAAACAAGAGG+AGG | - | chr7.3:39279977-39279996 | None:intergenic | 50.0% | |
TCTCACAGCAGAAGTAGGAC+TGG | - | chr7.3:39275684-39275703 | None:intergenic | 50.0% | |
TGAGCACCTGCTGAGTTTCT+TGG | - | chr7.3:39275619-39275638 | None:intergenic | 50.0% | |
TGGCGAAACTATGAAGGAGG+AGG | - | chr7.3:39279716-39279735 | None:intergenic | 50.0% | |
! | CAGTCCCTTTTACCTCCTTC+AGG | - | chr7.3:39276713-39276732 | None:intergenic | 50.0% |
! | CCACCTCCTCTTGTTTCGAA+TGG | + | chr7.3:39279971-39279990 | MS.gene84597:CDS | 50.0% |
! | TGGTGGCGAAACTATGAAGG+AGG | - | chr7.3:39279719-39279738 | None:intergenic | 50.0% |
! | TGGTGGTGCTCGGTTAGAAA+TGG | - | chr7.3:39279602-39279621 | None:intergenic | 50.0% |
ACAAGAGGAGGTGGAACTCG+CGG | - | chr7.3:39279965-39279984 | None:intergenic | 55.0% | |
AGGAAAGCCATGGGTGACCA+TGG | + | chr7.3:39277756-39277775 | MS.gene84597:intron | 55.0% | |
CTTCTCACCTTTCCCTTGGG+AGG | + | chr7.3:39276306-39276325 | MS.gene84597:CDS | 55.0% | |
GCAAGCTTCTACAACGGAGG+AGG | - | chr7.3:39279538-39279557 | None:intergenic | 55.0% | |
GCTTCTACAACGGAGGAGGA+TGG | - | chr7.3:39279534-39279553 | None:intergenic | 55.0% | |
GGAGCTAGGGCGAAGAACAT+TGG | + | chr7.3:39279763-39279782 | MS.gene84597:CDS | 55.0% | |
TGCAGACTGGTGTGGCGATA+AGG | - | chr7.3:39279239-39279258 | None:intergenic | 55.0% | |
AACACCGTTCTCCACCGCGA+CGG | + | chr7.3:39279573-39279592 | MS.gene84597:intron | 60.0% | |
AGAAATGGCATCCGTCGCGG+TGG | - | chr7.3:39279587-39279606 | None:intergenic | 60.0% | |
CGCGGTGGAGAACGGTGTTC+TGG | - | chr7.3:39279572-39279591 | None:intergenic | 65.0% | |
GCATCCGTCGCGGTGGAGAA+CGG | - | chr7.3:39279580-39279599 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 39275334 | 39280093 | 39275334 | ID=MS.gene84597 |
chr7.3 | mRNA | 39275334 | 39280093 | 39275334 | ID=MS.gene84597.t1;Parent=MS.gene84597 |
chr7.3 | exon | 39275334 | 39275975 | 39275334 | ID=MS.gene84597.t1.exon1;Parent=MS.gene84597.t1 |
chr7.3 | CDS | 39275334 | 39275975 | 39275334 | ID=cds.MS.gene84597.t1;Parent=MS.gene84597.t1 |
chr7.3 | exon | 39276075 | 39276719 | 39276075 | ID=MS.gene84597.t1.exon2;Parent=MS.gene84597.t1 |
chr7.3 | CDS | 39276075 | 39276719 | 39276075 | ID=cds.MS.gene84597.t1;Parent=MS.gene84597.t1 |
chr7.3 | exon | 39276808 | 39276877 | 39276808 | ID=MS.gene84597.t1.exon3;Parent=MS.gene84597.t1 |
chr7.3 | CDS | 39276808 | 39276877 | 39276808 | ID=cds.MS.gene84597.t1;Parent=MS.gene84597.t1 |
chr7.3 | exon | 39277319 | 39277377 | 39277319 | ID=MS.gene84597.t1.exon4;Parent=MS.gene84597.t1 |
chr7.3 | CDS | 39277319 | 39277377 | 39277319 | ID=cds.MS.gene84597.t1;Parent=MS.gene84597.t1 |
chr7.3 | exon | 39277847 | 39278050 | 39277847 | ID=MS.gene84597.t1.exon5;Parent=MS.gene84597.t1 |
chr7.3 | CDS | 39277847 | 39278050 | 39277847 | ID=cds.MS.gene84597.t1;Parent=MS.gene84597.t1 |
chr7.3 | exon | 39279728 | 39280093 | 39279728 | ID=MS.gene84597.t1.exon6;Parent=MS.gene84597.t1 |
chr7.3 | CDS | 39279728 | 39280093 | 39279728 | ID=cds.MS.gene84597.t1;Parent=MS.gene84597.t1 |
Gene Sequence |
Protein sequence |