AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84610.t1 MTR_7g066340 81.303 476 28 2 1 415 1 476 0.0 743
MS.gene84610.t1 MTR_7g066310 67.727 440 72 4 9 415 4 406 0.0 556
MS.gene84610.t1 MTR_7g066350 59.560 455 109 9 1 389 1 446 4.40e-166 474
MS.gene84610.t1 MTR_7g066280 68.033 366 45 2 100 415 70 413 4.57e-166 473
MS.gene84610.t1 MTR_7g066260 53.292 486 149 8 6 415 9 492 4.55e-155 447
MS.gene84610.t1 MTR_7g066400 53.564 463 134 6 1 400 1 445 1.03e-152 440
MS.gene84610.t1 MTR_7g066570 50.000 500 144 9 3 407 5 493 3.69e-137 404
MS.gene84610.t1 MTR_7g066360 49.896 483 156 10 6 414 8 478 1.05e-128 380
MS.gene84610.t1 MTR_7g012680 49.149 470 142 8 3 398 5 451 4.04e-123 365
MS.gene84610.t1 MTR_1g041315 65.636 291 83 4 100 376 164 451 6.77e-119 355
MS.gene84610.t1 MTR_1g041315 69.663 89 27 0 7 95 9 97 3.59e-34 133
MS.gene84610.t1 MTR_7g066290 49.115 452 140 9 6 393 9 434 3.51e-116 346
MS.gene84610.t1 MTR_2g029400 48.485 429 146 10 1 380 1 403 1.77e-113 338
MS.gene84610.t1 MTR_7g066580 46.903 452 156 10 22 398 5 447 4.43e-113 339
MS.gene84610.t1 MTR_7g058710 44.242 495 155 11 1 392 1 477 2.49e-112 338
MS.gene84610.t1 MTR_7g066430 39.256 484 189 10 12 392 4 485 3.38e-93 290
MS.gene84610.t1 MTR_7g058700 42.956 433 141 8 24 392 531 921 3.32e-92 298
MS.gene84610.t1 MTR_7g058700 28.488 172 103 4 12 171 752 915 1.58e-12 70.1
MS.gene84610.t1 MTR_7g066480 38.288 444 181 8 10 394 14 423 5.11e-85 266
MS.gene84610.t1 MTR_7g063920 36.961 441 211 8 5 392 4 430 8.95e-84 263
MS.gene84610.t1 MTR_1g014060 42.040 402 189 11 21 398 9 390 4.86e-80 252
MS.gene84610.t1 MTR_7g066490 37.443 438 175 8 12 394 16 409 5.22e-80 253
MS.gene84610.t1 MTR_7g066680 47.826 299 93 6 154 389 37 335 1.05e-71 229
MS.gene84610.t1 MTR_3g007740 36.674 439 217 10 11 392 8 442 5.88e-71 230
MS.gene84610.t1 MTR_7g063880 35.084 476 206 11 5 393 4 463 6.21e-71 231
MS.gene84610.t1 MTR_7g063660 33.121 471 219 8 11 392 8 471 9.25e-71 231
MS.gene84610.t1 MTR_7g063900 36.727 501 201 16 1 401 1 485 1.02e-68 226
MS.gene84610.t1 MTR_7g063670 34.228 447 224 10 8 392 13 451 2.52e-61 205
MS.gene84610.t1 MTR_7g063840 31.799 478 229 12 1 392 1 467 3.52e-59 200
MS.gene84610.t1 MTR_4g017470 30.957 491 249 11 1 407 1 485 4.01e-59 201
MS.gene84610.t1 MTR_7g066410 37.677 353 153 9 102 392 165 512 7.53e-58 197
MS.gene84610.t1 MTR_7g066410 56.818 88 38 0 13 100 11 98 9.92e-26 109
MS.gene84610.t1 MTR_4g019340 31.915 470 213 13 13 381 39 502 1.91e-55 191
MS.gene84610.t1 MTR_4g017440 29.960 504 233 13 3 392 5 502 6.25e-53 184
MS.gene84610.t1 MTR_7g062300 33.884 363 181 11 67 388 125 469 2.53e-50 177
MS.gene84610.t1 MTR_7g062300 54.000 100 46 0 1 100 1 100 2.01e-25 108
MS.gene84610.t1 MTR_7g062300 27.948 229 125 10 195 386 5 230 7.91e-14 73.6
MS.gene84610.t1 MTR_7g062300 38.144 97 54 2 12 107 256 347 6.15e-13 70.5
MS.gene84610.t1 MTR_7g063820 36.391 327 163 7 102 392 161 478 7.78e-50 176
MS.gene84610.t1 MTR_7g063820 54.167 96 43 1 5 100 3 97 2.81e-22 99.0
MS.gene84610.t1 MTR_7g062280 34.954 329 161 9 102 392 172 485 4.23e-49 174
MS.gene84610.t1 MTR_7g062280 54.000 100 44 1 1 100 1 98 2.69e-23 102
MS.gene84610.t1 MTR_7g062280 36.082 97 56 2 12 107 266 357 1.45e-12 69.7
MS.gene84610.t1 MTR_4g017610 29.835 486 231 15 2 389 3 476 4.50e-49 173
MS.gene84610.t1 MTR_3g065200 30.444 450 191 12 10 379 1 408 1.06e-46 167
MS.gene84610.t1 MTR_4g017830 33.978 362 174 9 96 403 162 512 1.11e-46 168
MS.gene84610.t1 MTR_4g017830 38.679 106 59 2 1 100 1 106 2.61e-14 75.1
MS.gene84610.t1 MTR_7g066390 53.797 158 45 1 243 400 1 130 1.56e-46 157
MS.gene84610.t1 MTR_7g063830 38.079 302 154 10 102 392 159 438 1.47e-44 160
MS.gene84610.t1 MTR_7g063830 53.125 96 45 0 5 100 3 98 2.79e-25 107
MS.gene84610.t1 MTR_4g019310 35.294 323 163 8 103 388 173 486 1.36e-43 159
MS.gene84610.t1 MTR_4g019310 42.308 104 52 2 6 101 2 105 3.00e-17 84.0
MS.gene84610.t1 MTR_7g100420 34.466 412 184 13 13 392 40 397 1.23e-41 152
MS.gene84610.t1 MTR_7g063890 37.243 341 159 10 102 401 175 501 9.75e-40 149
MS.gene84610.t1 MTR_7g063890 56.667 90 39 0 11 100 26 115 1.82e-24 105
MS.gene84610.t1 MTR_7g063890 25.688 218 129 5 201 386 26 242 5.13e-14 73.9
MS.gene84610.t1 MTR_7g063720 37.915 211 116 4 196 392 17 226 7.58e-37 135
MS.gene84610.t1 MTR_4g017410 33.127 323 171 11 103 392 174 484 6.52e-35 135
MS.gene84610.t1 MTR_4g017410 40.566 106 53 3 5 100 2 107 3.63e-16 80.9
MS.gene84610.t1 MTR_4g017550 27.601 471 201 16 41 390 20 471 4.26e-33 130
MS.gene84610.t1 MTR_7g063690 37.104 221 124 6 13 229 13 222 2.36e-30 117
MS.gene84610.t1 MTR_2g067310 48.551 138 51 2 18 135 53 190 1.09e-29 115
MS.gene84610.t1 MTR_7g063850 30.769 299 156 8 125 392 4 282 1.42e-28 114
MS.gene84610.t1 MTR_8g023240 24.249 466 255 13 13 393 38 490 1.87e-24 105
MS.gene84610.t1 MTR_8g445860 30.804 224 114 6 200 385 11 231 4.53e-21 92.0
MS.gene84610.t1 MTR_8g445860 36.508 126 64 5 4 121 5 122 3.24e-13 69.3
MS.gene84610.t1 MTR_7g062270 48.000 100 50 1 1 100 1 98 1.70e-20 92.8
MS.gene84610.t1 MTR_0150s0010 30.396 227 114 5 200 385 8 231 5.03e-20 89.0
MS.gene84610.t1 MTR_0150s0010 41.758 91 48 1 5 95 3 88 5.49e-13 68.6
MS.gene84610.t1 MTR_7g063870 38.411 151 68 5 6 155 25 151 9.39e-19 85.9
MS.gene84610.t1 MTR_4g019330 35.912 181 82 9 216 392 32 182 2.78e-17 80.1
MS.gene84610.t1 MTR_4g019240 40.566 106 55 3 3 100 4 109 5.37e-16 76.3
MS.gene84610.t1 MTR_1g115455 34.646 127 65 3 5 121 2 120 5.61e-14 71.6
MS.gene84610.t1 MTR_1g115450 35.780 109 62 2 7 115 2 102 2.41e-13 67.4
MS.gene84610.t1 MTR_7g063760 46.970 66 34 1 328 392 2 67 6.10e-13 64.3
MS.gene84610.t1 MTR_1g115440 40.659 91 49 1 5 95 4 89 7.98e-13 68.2
MS.gene84610.t1 MTR_0150s0030 38.462 91 50 2 6 95 2 87 1.38e-12 67.0
MS.gene84610.t1 MTR_8g044880 38.679 106 57 3 6 110 2 100 1.93e-12 67.8
MS.gene84610.t1 MTR_1g115470 41.837 98 46 2 1 98 1 87 2.38e-12 68.6
MS.gene84610.t1 MTR_8g445910 39.130 92 50 2 6 96 2 88 1.14e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84610.t1 AT5G01130 29.139 453 251 7 1 392 1 444 7.50e-44 159
MS.gene84610.t1 AT5G01150 28.092 477 247 11 12 395 9 482 2.89e-37 142
MS.gene84610.t1 AT5G01140 29.683 347 204 8 97 414 137 472 1.62e-36 139
MS.gene84610.t1 AT5G01120 29.261 352 206 9 99 414 163 507 5.39e-31 124
MS.gene84610.t1 AT5G01120 38.824 85 52 0 13 97 10 94 3.13e-15 77.8
MS.gene84610.t1 AT3G09110 26.582 316 170 4 12 267 9 322 5.96e-30 119
MS.gene84610.t1 AT3G09140 28.726 369 228 10 58 395 132 496 5.42e-29 119
MS.gene84610.t1 AT3G09140 43.299 97 52 1 1 97 1 94 6.81e-18 85.9
MS.gene84610.t1 AT5G43240 30.303 363 205 13 92 414 13 367 3.74e-27 111
MS.gene84610.t1 AT5G43240 30.303 363 205 13 92 414 157 511 1.60e-26 111
MS.gene84610.t1 AT5G43240 40.000 85 51 0 13 97 10 94 1.02e-15 79.3
MS.gene84610.t1 AT5G43240 30.303 363 205 13 92 414 157 511 1.60e-26 111
MS.gene84610.t1 AT5G43240 40.000 85 51 0 13 97 10 94 1.02e-15 79.3
MS.gene84610.t1 AT5G43240 30.303 363 205 13 92 414 157 511 1.60e-26 111
MS.gene84610.t1 AT5G43240 40.000 85 51 0 13 97 10 94 1.02e-15 79.3
MS.gene84610.t1 AT3G09140 26.582 395 231 10 58 395 132 524 2.57e-25 108
MS.gene84610.t1 AT3G09140 43.299 97 52 1 1 97 1 94 7.90e-18 85.9
MS.gene84610.t1 AT3G09120 43.956 91 50 1 11 101 5 94 1.18e-16 80.9
MS.gene84610.t1 AT3G09120 26.054 261 146 10 199 417 3 258 6.18e-13 69.7
MS.gene84610.t1 AT3G09120 29.193 161 111 2 96 256 156 313 7.47e-12 66.6
MS.gene84610.t1 AT5G37320 24.922 321 189 11 109 395 180 482 4.53e-14 74.3

Find 77 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAACACCATTAACATTTA+TGG 0.167833 7.3:+38897814 MS.gene84610:CDS
CCATTTCCTCCACGTCATTA+AGG 0.184539 7.3:-38897910 None:intergenic
AATATTGAAGCTGTGAAATT+TGG 0.192769 7.3:+38896742 MS.gene84610:CDS
TTTCTACCTTTGGCTTCTTC+AGG 0.207589 7.3:-38898821 None:intergenic
GTCGGACTTCATATTTAAAA+AGG 0.210262 7.3:+38897355 MS.gene84610:CDS
TGAGTTCAAACAAGTGTTTC+AGG 0.239676 7.3:+38897636 MS.gene84610:CDS
CCAGCATATCCACCTGTAAT+AGG 0.242061 7.3:-38897794 None:intergenic
AGCTTCTTATCATTGCCTTT+AGG 0.249361 7.3:+38896688 MS.gene84610:CDS
GCTTCTTATCATTGCCTTTA+GGG 0.256901 7.3:+38896689 MS.gene84610:CDS
AAGAAAAGATACCTCTTTCT+TGG 0.262602 7.3:-38897201 None:intergenic
CCTTTAGCACCACAACTCTA+AGG 0.276542 7.3:-38896609 None:intergenic
CCACCTGTAATAGGGGATTT+AGG 0.282026 7.3:-38897785 None:intergenic
TGATCTTCTCAAATTGTCTT+TGG 0.284928 7.3:+38897316 MS.gene84610:CDS
ATTGAGTAGCATTTCCTTGC+AGG 0.285490 7.3:-38896827 None:intergenic
AAGAAGCCAAAGGTAGAAAA+AGG 0.313800 7.3:+38898825 MS.gene84610:CDS
AACCAATTGGAAGTTAATAT+TGG 0.324974 7.3:+38897407 MS.gene84610:CDS
AAACTTGTCGTAACAACATT+TGG 0.329105 7.3:-38897107 None:intergenic
CTTGGTGATGTTGATATTAA+CGG 0.332558 7.3:-38897183 None:intergenic
AGTTTCCTCACTTTCCCCTT+AGG 0.347120 7.3:+38897539 MS.gene84610:CDS
TCTGTCACCATAAATGTTAA+TGG 0.349053 7.3:-38897821 None:intergenic
TAGGCACCTGCTGAGTTGTT+AGG 0.355556 7.3:-38896850 None:intergenic
TTCTACCTTTGGCTTCTTCA+GGG 0.358571 7.3:-38898820 None:intergenic
GAGGAAATGGTCGTTAATAT+TGG 0.365896 7.3:+38897923 MS.gene84610:CDS
GATCCTAAATCCCCTATTAC+AGG 0.369144 7.3:+38897782 MS.gene84610:CDS
TAAAGAAATCGGGTTTGTTA+AGG 0.380160 7.3:+38897043 MS.gene84610:intron
CAGCATATCCACCTGTAATA+GGG 0.383028 7.3:-38897793 None:intergenic
TTGAGCAGAAATGGTTGGTT+TGG 0.383294 7.3:-38897684 None:intergenic
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.3:+38898092 MS.gene84610:CDS
TGCAGGTAGTAGACATGTTC+AGG 0.403114 7.3:+38898773 MS.gene84610:intron
CATTTCCTCCACGTCATTAA+GGG 0.403582 7.3:-38897909 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.3:+38897128 MS.gene84610:CDS
GAGTTCAGATTGAGCAGAAA+TGG 0.407484 7.3:-38897693 None:intergenic
AAAGGAAGAATCTGATGAAA+TGG 0.409183 7.3:+38897436 MS.gene84610:CDS
TTTAGTTCTAAGTAACCAAT+TGG 0.411255 7.3:+38897394 MS.gene84610:CDS
CCTTAGAGTTGTGGTGCTAA+AGG 0.411974 7.3:+38896609 MS.gene84610:CDS
CCTTAATGACGTGGAGGAAA+TGG 0.412198 7.3:+38897910 MS.gene84610:CDS
ATCTCGATACACAATATCTA+TGG 0.421075 7.3:+38896797 MS.gene84610:CDS
TACCAATATTAACTTCCAAT+TGG 0.431128 7.3:-38897409 None:intergenic
AAGATATGAAATACCATCAA+TGG 0.434003 7.3:-38897870 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.452936 7.3:-38897555 None:intergenic
AAAGTTCTGTTTGCAGAGGC+AGG 0.454442 7.3:+38896640 MS.gene84610:CDS
TAATATACTAACCAATGAAC+TGG 0.462240 7.3:-38898103 None:intergenic
TCAAAATCTGCCTTGACAAA+CGG 0.470384 7.3:+38898074 MS.gene84610:CDS
CCTATTACAGGTGGATATGC+TGG 0.481859 7.3:+38897794 MS.gene84610:CDS
TTCATATCTTGAAAGAATGA+AGG 0.484244 7.3:+38897883 MS.gene84610:CDS
AGTTAATATTGGTACAGAAA+AGG 0.492157 7.3:+38897418 MS.gene84610:CDS
AACTTACAAAAGAGAATCCT+TGG 0.507106 7.3:-38897580 None:intergenic
CTACCTTTGGCTTCTTCAGG+GGG 0.513478 7.3:-38898818 None:intergenic
CAAAGTTTCCCTTAGAGTTG+TGG 0.516766 7.3:+38896600 MS.gene84610:CDS
TATCAACATCACCAAGAAAG+AGG 0.532453 7.3:+38897190 MS.gene84610:CDS
CTGGTTGAGGCCGTTTGTCA+AGG 0.537345 7.3:-38898084 None:intergenic
CCTTGCAAAACTTGTGGCTA+AGG 0.537453 7.3:+38896714 MS.gene84610:CDS
TCTGTTTGCAGAGGCAGGAA+AGG 0.538364 7.3:+38896645 MS.gene84610:CDS
ACTCCAATGTCATCCATTGA+TGG 0.546893 7.3:+38897857 MS.gene84610:CDS
TCTACCTTTGGCTTCTTCAG+GGG 0.550005 7.3:-38898819 None:intergenic
TCAGATTGAGCAGAAATGGT+TGG 0.550223 7.3:-38897689 None:intergenic
ATATGCAACACTGCTCCTAA+GGG 0.554427 7.3:-38897554 None:intergenic
CTCAATCCTAACAACTCAGC+AGG 0.565202 7.3:+38896844 MS.gene84610:CDS
CTTTAGCACCACAACTCTAA+GGG 0.565677 7.3:-38896608 None:intergenic
TTAAATATGAAGTCCGACAA+AGG 0.571420 7.3:-38897350 None:intergenic
AGGGACCCTTGCAAAACTTG+TGG 0.575071 7.3:+38896708 MS.gene84610:CDS
AGCATATCCACCTGTAATAG+GGG 0.575488 7.3:-38897792 None:intergenic
CATTGACTCCAAGCTTCTGA+AGG 0.575769 7.3:-38897136 None:intergenic
ATTTCCTCCACGTCATTAAG+GGG 0.575782 7.3:-38897908 None:intergenic
ACTAACCAATGAACTGGTTG+AGG 0.582536 7.3:-38898097 None:intergenic
CCTAAATCCCCTATTACAGG+TGG 0.600307 7.3:+38897785 MS.gene84610:CDS
CGTTAATATTGGCCAGAAGG+AGG 0.604404 7.3:+38897934 MS.gene84610:CDS
TTTCTGCTCAATCTGAACTC+AGG 0.604931 7.3:+38897696 MS.gene84610:CDS
ATACCATCAATGGATGACAT+TGG 0.606080 7.3:-38897860 None:intergenic
GGTCGTTAATATTGGCCAGA+AGG 0.607810 7.3:+38897931 MS.gene84610:CDS
AAACAAAGTTCTGTTTGCAG+AGG 0.616403 7.3:+38896636 MS.gene84610:CDS
GCAGTGTTGCATATTCTCCA+AGG 0.619271 7.3:+38897563 MS.gene84610:CDS
TTTGTCGACTTGCTCAGCTG+AGG 0.622308 7.3:-38896581 None:intergenic
CTGCTCCTAAGGGGAAAGTG+AGG 0.642220 7.3:-38897544 None:intergenic
TCTATGGTCACACACCTGCA+AGG 0.646114 7.3:+38896813 MS.gene84610:CDS
TATGCAACACTGCTCCTAAG+GGG 0.682165 7.3:-38897553 None:intergenic
TTTCCTCCACGTCATTAAGG+GGG 0.685681 7.3:-38897907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATTATAATTAAAATGT+AGG - chr7.3:38898147-38898166 None:intergenic 10.0%
!!! CTTTTTTAATTTAACAATTA+AGG + chr7.3:38898431-38898450 MS.gene84610:intron 10.0%
!!! AATAGTAATAATTTTCCATA+AGG + chr7.3:38898543-38898562 MS.gene84610:intron 15.0%
!!! TTATAATTGTTTTTAGGTAT+CGG - chr7.3:38897734-38897753 None:intergenic 15.0%
!! ATAAGTGTTAAATATGTTGT+TGG - chr7.3:38898315-38898334 None:intergenic 20.0%
!! ATTTGAAGAGTGATTAAAAA+TGG + chr7.3:38898268-38898287 MS.gene84610:intron 20.0%
!! GATACCTAAAAACAATTATA+AGG + chr7.3:38897733-38897752 MS.gene84610:CDS 20.0%
!! TTTGAGTAGATTAAAATAGT+CGG - chr7.3:38898465-38898484 None:intergenic 20.0%
!!! AAAATTTGGTCTCTAAATTT+TGG - chr7.3:38898242-38898261 None:intergenic 20.0%
!!! AGTAATTTAAAATGAGCAAA+AGG + chr7.3:38898641-38898660 MS.gene84610:intron 20.0%
!!! ATATTATCTTTAGAATTGAC+TGG + chr7.3:38898339-38898358 MS.gene84610:intron 20.0%
!!! ATTTGTTATATTAAATGCAG+AGG - chr7.3:38898526-38898545 None:intergenic 20.0%
!!! TTTGCCTTATAATTGTTTTT+AGG - chr7.3:38897740-38897759 None:intergenic 20.0%
! AAATACATACAGTTACCTTA+TGG - chr7.3:38898561-38898580 None:intergenic 25.0%
! AACCAATTGGAAGTTAATAT+TGG + chr7.3:38897407-38897426 MS.gene84610:CDS 25.0%
! AAGATATGAAATACCATCAA+TGG - chr7.3:38897873-38897892 None:intergenic 25.0%
! AATATTGAAGCTGTGAAATT+TGG + chr7.3:38896742-38896761 MS.gene84610:CDS 25.0%
! AGGAATCAAAAATGTATTTG+TGG + chr7.3:38896984-38897003 MS.gene84610:intron 25.0%
! AGTTAATATTGGTACAGAAA+AGG + chr7.3:38897418-38897437 MS.gene84610:CDS 25.0%
! AGTTGTTATGAATCTAATAC+AGG - chr7.3:38897996-38898015 None:intergenic 25.0%
! ATGTAGGATGATATTATGTT+TGG - chr7.3:38898131-38898150 None:intergenic 25.0%
! CAAATATGAAAATAGTATGC+AGG - chr7.3:38898370-38898389 None:intergenic 25.0%
! CTTCAAATTCCTTCAAAATT+TGG - chr7.3:38898256-38898275 None:intergenic 25.0%
! TAATATACTAACCAATGAAC+TGG - chr7.3:38898106-38898125 None:intergenic 25.0%
! TACCAATATTAACTTCCAAT+TGG - chr7.3:38897412-38897431 None:intergenic 25.0%
! TTCACTAATTCTTCAATATG+TGG + chr7.3:38897279-38897298 MS.gene84610:intron 25.0%
! TTCATATCTTGAAAGAATGA+AGG + chr7.3:38897883-38897902 MS.gene84610:CDS 25.0%
!! ATTTAGAGACCAAATTTTGA+AGG + chr7.3:38898244-38898263 MS.gene84610:intron 25.0%
!! TAAGGTAACTGTATGTATTT+TGG + chr7.3:38898561-38898580 MS.gene84610:intron 25.0%
!!! AAAAAGTGTTAGTGATGTAA+TGG - chr7.3:38898417-38898436 None:intergenic 25.0%
!!! TTTAGTTCTAAGTAACCAAT+TGG + chr7.3:38897394-38897413 MS.gene84610:CDS 25.0%
AAACTTGTCGTAACAACATT+TGG - chr7.3:38897110-38897129 None:intergenic 30.0%
AAAGGAAGAATCTGATGAAA+TGG + chr7.3:38897436-38897455 MS.gene84610:CDS 30.0%
AACTTACAAAAGAGAATCCT+TGG - chr7.3:38897583-38897602 None:intergenic 30.0%
AAGAAAAGATACCTCTTTCT+TGG - chr7.3:38897204-38897223 None:intergenic 30.0%
ATCTCGATACACAATATCTA+TGG + chr7.3:38896797-38896816 MS.gene84610:CDS 30.0%
CAACCACATGAAATCAAATA+TGG - chr7.3:38898021-38898040 None:intergenic 30.0%
CATGTTTATATGTGGACAAT+AGG + chr7.3:38896943-38896962 MS.gene84610:intron 30.0%
CTTCAATATGTGGTTTGAAT+AGG + chr7.3:38897289-38897308 MS.gene84610:intron 30.0%
GAGTGATTAAAAATGGAAGT+TGG + chr7.3:38898275-38898294 MS.gene84610:intron 30.0%
GTCGGACTTCATATTTAAAA+AGG + chr7.3:38897355-38897374 MS.gene84610:CDS 30.0%
TCAATTTCATATCCAGCAAT+AGG - chr7.3:38896872-38896891 None:intergenic 30.0%
TCTGTCACCATAAATGTTAA+TGG - chr7.3:38897824-38897843 None:intergenic 30.0%
TGATCTTCTCAAATTGTCTT+TGG + chr7.3:38897316-38897335 MS.gene84610:CDS 30.0%
TGGAACACCATTAACATTTA+TGG + chr7.3:38897814-38897833 MS.gene84610:CDS 30.0%
TTAAATATGAAGTCCGACAA+AGG - chr7.3:38897353-38897372 None:intergenic 30.0%
! TCAAAATCCGAGATTTTTCT+CGG - chr7.3:38897022-38897041 None:intergenic 30.0%
! TCACCATATTTGATTTCATG+TGG + chr7.3:38898015-38898034 MS.gene84610:intron 30.0%
!! ATGGAAGTTGGTATATTTAG+AGG + chr7.3:38898287-38898306 MS.gene84610:intron 30.0%
!! CGGATTTTGAGTAAAGAAAT+CGG + chr7.3:38897032-38897051 MS.gene84610:intron 30.0%
!! CTTGGTGATGTTGATATTAA+CGG - chr7.3:38897186-38897205 None:intergenic 30.0%
!! GGATTTTGAGTAAAGAAATC+GGG + chr7.3:38897033-38897052 MS.gene84610:intron 30.0%
!! TAAAGAAATCGGGTTTGTTA+AGG + chr7.3:38897043-38897062 MS.gene84610:intron 30.0%
!! TGGAAGTTGGTATATTTAGA+GGG + chr7.3:38898288-38898307 MS.gene84610:intron 30.0%
!!! TTTTAGGTATCGGTAATATC+TGG - chr7.3:38897724-38897743 None:intergenic 30.0%
AAAATGAGCAAAAGGTGAGA+AGG + chr7.3:38898649-38898668 MS.gene84610:intron 35.0%
AAACAAAGTTCTGTTTGCAG+AGG + chr7.3:38896636-38896655 MS.gene84610:CDS 35.0%
AAATGAGCAAAAGGTGAGAA+GGG + chr7.3:38898650-38898669 MS.gene84610:intron 35.0%
AAGAAAGTAGGAGTCATGAA+GGG + chr7.3:38898673-38898692 MS.gene84610:intron 35.0%
AAGAAGCCAAAGGTAGAAAA+AGG + chr7.3:38898825-38898844 MS.gene84610:CDS 35.0%
AGCTTCTTATCATTGCCTTT+AGG + chr7.3:38896688-38896707 MS.gene84610:CDS 35.0%
ATACCATCAATGGATGACAT+TGG - chr7.3:38897863-38897882 None:intergenic 35.0%
GAACGTGTCATGTTTATATG+TGG + chr7.3:38896935-38896954 MS.gene84610:intron 35.0%
GAGGAAATGGTCGTTAATAT+TGG + chr7.3:38897923-38897942 MS.gene84610:CDS 35.0%
GCTTCTTATCATTGCCTTTA+GGG + chr7.3:38896689-38896708 MS.gene84610:CDS 35.0%
TATCAACATCACCAAGAAAG+AGG + chr7.3:38897190-38897209 MS.gene84610:CDS 35.0%
TCAAAATCTGCCTTGACAAA+CGG + chr7.3:38898074-38898093 MS.gene84610:CDS 35.0%
TGAGTTCAAACAAGTGTTTC+AGG + chr7.3:38897636-38897655 MS.gene84610:CDS 35.0%
TGGATCTTCATATGATCCAA+GGG + chr7.3:38898581-38898600 MS.gene84610:intron 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.3:38897128-38897147 MS.gene84610:CDS 35.0%
TTATATGTGCATGTACATGC+AGG + chr7.3:38898756-38898775 MS.gene84610:intron 35.0%
TTGGATCTTCATATGATCCA+AGG + chr7.3:38898580-38898599 MS.gene84610:intron 35.0%
! ATTTGATTTCATGTGGTTGC+AGG + chr7.3:38898022-38898041 MS.gene84610:intron 35.0%
! GGTACTGTTTGAGTTACTTT+AGG + chr7.3:38896964-38896983 MS.gene84610:intron 35.0%
! TTTGATTTCATGTGGTTGCA+GGG + chr7.3:38898023-38898042 MS.gene84610:intron 35.0%
!! GATTTTGTTTGTTGAAGCTG+AGG + chr7.3:38897493-38897512 MS.gene84610:CDS 35.0%
AATATGCAACACTGCTCCTA+AGG - chr7.3:38897558-38897577 None:intergenic 40.0%
ACTAACCAATGAACTGGTTG+AGG - chr7.3:38898100-38898119 None:intergenic 40.0%
ACTCCAATGTCATCCATTGA+TGG + chr7.3:38897857-38897876 MS.gene84610:CDS 40.0%
AGCATATCCACCTGTAATAG+GGG - chr7.3:38897795-38897814 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG - chr7.3:38897557-38897576 None:intergenic 40.0%
ATTGAGTAGCATTTCCTTGC+AGG - chr7.3:38896830-38896849 None:intergenic 40.0%
ATTTCCTCCACGTCATTAAG+GGG - chr7.3:38897911-38897930 None:intergenic 40.0%
CAAAGTTTCCCTTAGAGTTG+TGG + chr7.3:38896600-38896619 MS.gene84610:CDS 40.0%
CAGCATATCCACCTGTAATA+GGG - chr7.3:38897796-38897815 None:intergenic 40.0%
CATATGATCCAAGGGTAATG+TGG + chr7.3:38898589-38898608 MS.gene84610:intron 40.0%
CATTTCCTCCACGTCATTAA+GGG - chr7.3:38897912-38897931 None:intergenic 40.0%
CGTTGAACCGAGAAAAATCT+CGG + chr7.3:38897012-38897031 MS.gene84610:intron 40.0%
CTTTAGCACCACAACTCTAA+GGG - chr7.3:38896611-38896630 None:intergenic 40.0%
GAAGAAAGTAGGAGTCATGA+AGG + chr7.3:38898672-38898691 MS.gene84610:intron 40.0%
GAGTTCAGATTGAGCAGAAA+TGG - chr7.3:38897696-38897715 None:intergenic 40.0%
GATCCTAAATCCCCTATTAC+AGG + chr7.3:38897782-38897801 MS.gene84610:CDS 40.0%
GGTCTCAAAAACTCCTTTGT+CGG + chr7.3:38897337-38897356 MS.gene84610:CDS 40.0%
TCAGATTGAGCAGAAATGGT+TGG - chr7.3:38897692-38897711 None:intergenic 40.0%
TTTCTGCTCAATCTGAACTC+AGG + chr7.3:38897696-38897715 MS.gene84610:CDS 40.0%
! CTTAGCCACAAGTTTTGCAA+GGG - chr7.3:38896716-38896735 None:intergenic 40.0%
! GAGCTTCCTTTTTCTACCTT+TGG - chr7.3:38898834-38898853 None:intergenic 40.0%
! GTTTGTCAAGGCAGATTTTG+AGG - chr7.3:38898075-38898094 None:intergenic 40.0%
! TCATGAAGGGTGTGTAATCT+TGG + chr7.3:38898686-38898705 MS.gene84610:intron 40.0%
! TTCTACCTTTGGCTTCTTCA+GGG - chr7.3:38898823-38898842 None:intergenic 40.0%
! TTGAGCAGAAATGGTTGGTT+TGG - chr7.3:38897687-38897706 None:intergenic 40.0%
! TTTCTACCTTTGGCTTCTTC+AGG - chr7.3:38898824-38898843 None:intergenic 40.0%
AAAGTTCTGTTTGCAGAGGC+AGG + chr7.3:38896640-38896659 MS.gene84610:CDS 45.0%
AGGGTAATGTGGAGTAAGGA+CGG + chr7.3:38898600-38898619 MS.gene84610:intron 45.0%
AGGTGAGAAGGGAAGAAAGT+AGG + chr7.3:38898661-38898680 MS.gene84610:intron 45.0%
AGTTTCCTCACTTTCCCCTT+AGG + chr7.3:38897539-38897558 MS.gene84610:CDS 45.0%
ATTGGCCAGAAGGAGGTAAA+AGG + chr7.3:38897941-38897960 MS.gene84610:intron 45.0%
CCACCTGTAATAGGGGATTT+AGG - chr7.3:38897788-38897807 None:intergenic 45.0%
CCAGCATATCCACCTGTAAT+AGG - chr7.3:38897797-38897816 None:intergenic 45.0%
CCATTTCCTCCACGTCATTA+AGG - chr7.3:38897913-38897932 None:intergenic 45.0%
CCTAAATCCCCTATTACAGG+TGG + chr7.3:38897785-38897804 MS.gene84610:CDS 45.0%
CCTATTACAGGTGGATATGC+TGG + chr7.3:38897794-38897813 MS.gene84610:CDS 45.0%
CCTTAATGACGTGGAGGAAA+TGG + chr7.3:38897910-38897929 MS.gene84610:CDS 45.0%
CCTTGCAAAACTTGTGGCTA+AGG + chr7.3:38896714-38896733 MS.gene84610:CDS 45.0%
CCTTTAGCACCACAACTCTA+AGG - chr7.3:38896612-38896631 None:intergenic 45.0%
CGTTAATATTGGCCAGAAGG+AGG + chr7.3:38897934-38897953 MS.gene84610:CDS 45.0%
CTCAATCCTAACAACTCAGC+AGG + chr7.3:38896844-38896863 MS.gene84610:CDS 45.0%
GCAGTGTTGCATATTCTCCA+AGG + chr7.3:38897563-38897582 MS.gene84610:CDS 45.0%
GGTCGTTAATATTGGCCAGA+AGG + chr7.3:38897931-38897950 MS.gene84610:CDS 45.0%
TATGCAACACTGCTCCTAAG+GGG - chr7.3:38897556-38897575 None:intergenic 45.0%
TCCAAGGGTAATGTGGAGTA+AGG + chr7.3:38898596-38898615 MS.gene84610:intron 45.0%
TCCTTACTCCACATTACCCT+TGG - chr7.3:38898600-38898619 None:intergenic 45.0%
TGCAGGTAGTAGACATGTTC+AGG + chr7.3:38898773-38898792 MS.gene84610:intron 45.0%
TTGGCCAGAAGGAGGTAAAA+GGG + chr7.3:38897942-38897961 MS.gene84610:intron 45.0%
TTTCCTCCACGTCATTAAGG+GGG - chr7.3:38897910-38897929 None:intergenic 45.0%
! AGTTTTGCAAGGGTCCCTAA+AGG - chr7.3:38896706-38896725 None:intergenic 45.0%
! CCTTAGAGTTGTGGTGCTAA+AGG + chr7.3:38896609-38896628 MS.gene84610:CDS 45.0%
! CCTTAGCCACAAGTTTTGCA+AGG - chr7.3:38896717-38896736 None:intergenic 45.0%
! TCTACCTTTGGCTTCTTCAG+GGG - chr7.3:38898822-38898841 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG - chr7.3:38897139-38897158 None:intergenic 45.0%
AACATGACACGTTCTCGCAG+AGG - chr7.3:38896929-38896948 None:intergenic 50.0%
AACGGCCTCAACCAGTTCAT+TGG + chr7.3:38898092-38898111 MS.gene84610:CDS 50.0%
AGGGACCCTTGCAAAACTTG+TGG + chr7.3:38896708-38896727 MS.gene84610:CDS 50.0%
GCAGAGGTAGTAGGACTTCA+AGG - chr7.3:38896913-38896932 None:intergenic 50.0%
TAGGCACCTGCTGAGTTGTT+AGG - chr7.3:38896853-38896872 None:intergenic 50.0%
TCTATGGTCACACACCTGCA+AGG + chr7.3:38896813-38896832 MS.gene84610:CDS 50.0%
TCTGTTTGCAGAGGCAGGAA+AGG + chr7.3:38896645-38896664 MS.gene84610:CDS 50.0%
! CACTCCCTTTTACCTCCTTC+TGG - chr7.3:38897949-38897968 None:intergenic 50.0%
! CTACCTTTGGCTTCTTCAGG+GGG - chr7.3:38898821-38898840 None:intergenic 50.0%
!! TTTGTCGACTTGCTCAGCTG+AGG - chr7.3:38896584-38896603 None:intergenic 50.0%
ACTCAGCAGGTGCCTATTGC+TGG + chr7.3:38896857-38896876 MS.gene84610:intron 55.0%
CACGTTCTCGCAGAGGTAGT+AGG - chr7.3:38896922-38896941 None:intergenic 55.0%
CTGCTCCTAAGGGGAAAGTG+AGG - chr7.3:38897547-38897566 None:intergenic 55.0%
CTGGTTGAGGCCGTTTGTCA+AGG - chr7.3:38898087-38898106 None:intergenic 55.0%
GAAGGTCCCCCTTAATGACG+TGG + chr7.3:38897901-38897920 MS.gene84610:CDS 55.0%
GGTCCCCCTTAATGACGTGG+AGG + chr7.3:38897904-38897923 MS.gene84610:CDS 60.0%
! CCTTTGGCTTCTTCAGGGGG+CGG - chr7.3:38898818-38898837 None:intergenic 60.0%
! CTTTGGCTTCTTCAGGGGGC+GGG - chr7.3:38898817-38898836 None:intergenic 60.0%
CCGCCCCCTGAAGAAGCCAA+AGG + chr7.3:38898815-38898834 MS.gene84610:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38896568 38898860 38896568 ID=MS.gene84610
chr7.3 mRNA 38896568 38898860 38896568 ID=MS.gene84610.t1;Parent=MS.gene84610
chr7.3 exon 38896568 38896865 38896568 ID=MS.gene84610.t1.exon1;Parent=MS.gene84610.t1
chr7.3 CDS 38896568 38896865 38896568 ID=cds.MS.gene84610.t1;Parent=MS.gene84610.t1
chr7.3 exon 38897048 38897211 38897048 ID=MS.gene84610.t1.exon2;Parent=MS.gene84610.t1
chr7.3 CDS 38897048 38897211 38897048 ID=cds.MS.gene84610.t1;Parent=MS.gene84610.t1
chr7.3 exon 38897311 38897955 38897311 ID=MS.gene84610.t1.exon3;Parent=MS.gene84610.t1
chr7.3 CDS 38897311 38897955 38897311 ID=cds.MS.gene84610.t1;Parent=MS.gene84610.t1
chr7.3 exon 38898044 38898113 38898044 ID=MS.gene84610.t1.exon4;Parent=MS.gene84610.t1
chr7.3 CDS 38898044 38898113 38898044 ID=cds.MS.gene84610.t1;Parent=MS.gene84610.t1
chr7.3 exon 38898778 38898860 38898778 ID=MS.gene84610.t1.exon5;Parent=MS.gene84610.t1
chr7.3 CDS 38898778 38898860 38898778 ID=cds.MS.gene84610.t1;Parent=MS.gene84610.t1
Gene Sequence

>MS.gene84610

ATGGCTGAAAATTCCTCAGCTGAGCAAGTCGACAAAGTTTCCCTTAGAGTTGTGGTGCTAAAGGAGAAAAACAAAGTTCTGTTTGCAGAGGCAGGAAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTATCATTGCCTTTAGGGACCCTTGCAAAACTTGTGGCTAAGGACTCAAATATTGAAGCTGTGAAATTTGGCAGCATAAGCTCACTGTATCAAAGTGTGTCAGATCTCGATACACAATATCTATGGTCACACACCTGCAAGGAAATGCTACTCAATCCTAACAACTCAGCAGGTGCCTATTGCTGGATATGAAATTGAACATTGACAATACTGAGTCCTTGAAGTCCTACTACCTCTGCGAGAACGTGTCATGTTTATATGTGGACAATAGGTACTGTTTGAGTTACTTTAGGAATCAAAAATGTATTTGTGGAAAGTCGTTGAACCGAGAAAAATCTCGGATTTTGAGTAAAGAAATCGGGTTTGTTAAGGAAATGTCGACATTTATAATATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGATATTGATGCTATTGATAAACAAACCGTTAATATCAACATCACCAAGAAAGAGGTATCTTTTCTTGTTCTGTGTTTGTATGACATATTTTTTGTTGATTATTATTATCATTGTTTTTTCTTTCACTAATTCTTCAATATGTGGTTTGAATAGGTAGTTGATCTTCTCAAATTGTCTTTGGTCTCAAAAACTCCTTTGTCGGACTTCATATTTAAAAAGGAACATTTTGTTGAAGATTTAGTTCTAAGTAACCAATTGGAAGTTAATATTGGTACAGAAAAGGAAGAATCTGATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCAAATAAACAGATTTTGTTTGTTGAAGCTGAGGAAGATTTTGCTGATTTTGTTTTTAGTTTCCTCACTTTCCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGATTCTCTTTTGTAAGTTGCATTGATAATTTATACAAGAGCATGACTGAATTGAGTTCAAACAAGTGTTTCAGGTCACAGCTTTTCAAAGACATACTAACCAAACCAACCATTTCTGCTCAATCTGAACTCAGGAACCAGATATTACCGATACCTAAAAACAATTATAAGGCAAAAAATATGTCATACAAATTTGTTGATCCTAAATCCCCTATTACAGGTGGATATGCTGGAACACCATTAACATTTATGGTGACAGACGAATTAGTTGTGACTCCAATGTCATCCATTGATGGTATTTCATATCTTGAAAGAATGAAGGTCCCCCTTAATGACGTGGAGGAAATGGTCGTTAATATTGGCCAGAAGGAGGTAAAAGGGAGTGTGTTCGTCTTTCATTTTAATATTTCCTGTATTAGATTCATAACAACTCACCATATTTGATTTCATGTGGTTGCAGGGTCTCAGCATACTTAGAGCTTCATTGACCTCAAAATCTGCCTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATATTAGACCAAACATAATATCATCCTACATTTTAATTATAATAAACACAATATTAAAGTTCATCTATAAAATTCTTCAAAAATAGTCGCTTCGAACATGTTAAGTGAACTTTTGTTAACCAAAATTTAGAGACCAAATTTTGAAGGAATTTGAAGAGTGATTAAAAATGGAAGTTGGTATATTTAGAGGGACCAACAACATATTTAACACTTATTTGTATATTATCTTTAGAATTGACTGGTTGTGCCTGCATACTATTTTCATATTTGAAATACTTGTGTAAACTAACATAGCCATTACATCACTAACACTTTTTTAATTTAACAATTAAGGAGAAATTACCGACTATTTTAATCTACTCAAATGTGCTACGCAACTCATGCTTATAAAAATATTAGATGACCTCTGCATTTAATATAACAAATAGTAATAATTTTCCATAAGGTAACTGTATGTATTTTGGATCTTCATATGATCCAAGGGTAATGTGGAGTAAGGACGGTTAATGTCAAGAAAATTAAGTAATTTAAAATGAGCAAAAGGTGAGAAGGGAAGAAAGTAGGAGTCATGAAGGGTGTGTAATCTTGGTCACTTGTTTGTTAAATAATTTTTAATATGTGCTAACTACTTTTTTATTATATGTGCATGTACATGCAGGTAGTAGACATGTTCAGGCTAATTTGTCATCTAATGCCCGCCCCCTGAAGAAGCCAAAGGTAGAAAAAGGAAGCTCGAGATAA
Protein sequence

>MS.gene84610.t1

MAENSSAEQVDKVSLRVVVLKEKNKVLFAEAGKDFVDVLLSFLSLPLGTLAKLVAKDSNIEAVKFGSISSLYQSVSDLDTQYLWSHTCKEMLLNPNNSAEIGFVKEMSTFIISDDLYVMPNVVTTSLNLLQKLGVNDIDAIDKQTVNINITKKEVVDLLKLSLVSKTPLSDFIFKKEHFVEDLVLSNQLEVNIGTEKEESDEMVVKVLRRKSNKQILFVEAEEDFADFVFSFLTFPLGAVLHILQGFSFVSCIDNLYKSMTELSSNKCFRSQLFKDILTKPTISAQSELRNQILPIPKNNYKAKNMSYKFVDPKSPITGGYAGTPLTFMVTDELVVTPMSSIDGISYLERMKVPLNDVEEMVVNIGQKEGLSILRASLTSKSALTNGLNQFIGSRHVQANLSSNARPLKKPKVEKGSSR