AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037649

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037649.t1 MTR_4g017830 75.655 534 117 6 3 532 6 530 0.0 790
MS.gene037649.t1 MTR_4g019340 81.098 492 62 4 8 493 37 503 0.0 777
MS.gene037649.t1 MTR_4g017440 67.717 508 152 7 3 507 8 506 0.0 656
MS.gene037649.t1 MTR_4g017410 64.547 519 151 7 1 512 1 493 0.0 637
MS.gene037649.t1 MTR_4g017470 61.197 518 156 6 1 512 1 479 0.0 582
MS.gene037649.t1 MTR_4g017550 65.466 472 143 9 36 503 18 473 0.0 577
MS.gene037649.t1 MTR_4g017610 58.032 498 177 9 4 499 8 475 0.0 543
MS.gene037649.t1 MTR_4g019310 43.307 508 257 14 1 499 1 486 3.29e-122 368
MS.gene037649.t1 MTR_7g066340 35.484 527 259 14 2 514 5 464 2.56e-83 267
MS.gene037649.t1 MTR_7g066570 36.226 530 260 18 3 507 8 484 2.74e-81 265
MS.gene037649.t1 MTR_7g066260 33.945 545 283 13 3 532 9 491 3.05e-81 262
MS.gene037649.t1 MTR_7g066350 34.961 512 253 11 1 499 1 445 5.22e-80 258
MS.gene037649.t1 MTR_7g066410 35.140 535 273 16 10 503 11 512 3.55e-79 257
MS.gene037649.t1 MTR_7g066410 27.953 254 147 8 1 239 276 508 1.01e-11 67.8
MS.gene037649.t1 MTR_7g058710 32.258 527 295 11 1 509 1 483 1.26e-75 247
MS.gene037649.t1 MTR_7g066430 36.138 523 267 19 10 505 5 487 2.37e-71 236
MS.gene037649.t1 MTR_7g012680 34.034 523 246 16 3 507 8 449 7.49e-70 231
MS.gene037649.t1 MTR_7g012680 26.217 267 148 9 256 512 2 229 6.23e-12 68.2
MS.gene037649.t1 MTR_7g066400 33.072 511 247 13 2 499 5 433 2.85e-69 229
MS.gene037649.t1 MTR_1g041315 33.008 512 244 16 5 487 10 451 5.17e-68 227
MS.gene037649.t1 MTR_7g066360 34.375 544 272 17 3 533 8 479 7.07e-66 221
MS.gene037649.t1 MTR_7g062280 33.017 527 280 17 10 509 11 491 3.15e-60 207
MS.gene037649.t1 MTR_7g063660 32.122 523 295 16 1 509 1 477 3.71e-60 206
MS.gene037649.t1 MTR_7g063880 31.631 509 285 16 10 508 12 467 6.48e-60 205
MS.gene037649.t1 MTR_7g066310 30.620 516 218 14 10 514 8 394 9.74e-60 203
MS.gene037649.t1 MTR_7g066580 31.873 502 264 14 15 501 1 439 1.18e-59 204
MS.gene037649.t1 MTR_7g066290 36.800 375 197 10 3 359 9 361 6.66e-58 199
MS.gene037649.t1 MTR_7g062300 32.171 516 285 17 3 502 6 472 9.42e-58 199
MS.gene037649.t1 MTR_7g063840 31.853 518 294 17 3 509 4 473 1.29e-57 199
MS.gene037649.t1 MTR_7g063900 33.010 515 297 17 2 503 3 482 1.82e-56 196
MS.gene037649.t1 MTR_7g063890 31.660 518 301 15 1 503 19 498 9.91e-54 189
MS.gene037649.t1 MTR_4g019240 74.790 119 24 3 4 121 8 121 8.93e-50 169
MS.gene037649.t1 MTR_4g019240 85.915 71 10 0 461 531 112 182 4.03e-30 116
MS.gene037649.t1 MTR_2g029400 29.862 509 228 12 1 491 6 403 3.19e-49 175
MS.gene037649.t1 MTR_7g063830 32.746 397 230 10 1 384 1 373 3.37e-49 176
MS.gene037649.t1 MTR_7g063820 31.107 524 306 17 1 509 1 484 1.78e-48 175
MS.gene037649.t1 MTR_7g063920 29.563 504 272 12 10 509 12 436 9.85e-47 169
MS.gene037649.t1 MTR_7g063670 30.019 523 270 16 6 509 12 457 1.33e-46 169
MS.gene037649.t1 MTR_7g058700 33.978 362 154 13 21 351 531 838 4.77e-44 167
MS.gene037649.t1 MTR_3g065200 29.293 495 260 16 10 497 4 415 4.53e-43 159
MS.gene037649.t1 MTR_3g007740 29.435 513 281 18 1 503 1 442 3.04e-41 154
MS.gene037649.t1 MTR_7g066480 35.196 358 186 12 10 350 17 345 5.51e-41 153
MS.gene037649.t1 MTR_7g066280 27.477 444 252 11 98 514 1 401 9.64e-40 149
MS.gene037649.t1 MTR_7g066490 32.951 349 192 10 10 350 17 331 2.48e-36 140
MS.gene037649.t1 MTR_7g066680 31.761 318 159 8 220 499 37 334 4.37e-27 112
MS.gene037649.t1 MTR_1g014060 34.211 228 119 8 18 235 9 215 4.34e-26 110
MS.gene037649.t1 MTR_1g014060 34.286 210 99 7 298 503 210 384 7.28e-18 85.9
MS.gene037649.t1 MTR_8g023240 24.364 550 317 18 9 524 37 521 2.85e-24 107
MS.gene037649.t1 MTR_4g019350 54.545 99 32 2 326 424 1 86 3.32e-24 97.1
MS.gene037649.t1 MTR_7g063720 30.962 239 127 3 264 499 19 222 3.98e-24 101
MS.gene037649.t1 MTR_8g445860 29.134 254 122 8 268 497 13 232 7.72e-22 95.1
MS.gene037649.t1 MTR_8g445860 31.048 248 146 7 1 241 7 236 5.97e-20 89.7
MS.gene037649.t1 MTR_1g115440 30.709 254 146 8 1 241 1 237 9.22e-21 92.0
MS.gene037649.t1 MTR_1g115440 29.289 239 144 7 268 497 11 233 9.18e-18 83.2
MS.gene037649.t1 MTR_7g100420 31.206 282 170 7 220 499 134 393 1.21e-19 91.7
MS.gene037649.t1 MTR_7g062270 34.483 203 104 8 1 194 1 183 2.31e-19 90.5
MS.gene037649.t1 MTR_0150s0010 29.249 253 150 6 1 241 1 236 2.88e-18 84.7
MS.gene037649.t1 MTR_0150s0010 30.342 234 148 8 268 497 10 232 1.02e-16 80.1
MS.gene037649.t1 MTR_1g115455 27.237 257 145 5 1 241 1 231 2.96e-14 72.8
MS.gene037649.t1 MTR_1g115455 36.709 79 48 1 268 344 9 87 6.65e-12 65.9
MS.gene037649.t1 MTR_1g115450 39.241 79 46 1 268 344 7 85 1.28e-13 68.6
MS.gene037649.t1 MTR_1g115450 34.400 125 65 2 1 125 1 108 1.54e-11 62.8
MS.gene037649.t1 MTR_0150s0030 32.653 98 57 2 268 362 8 99 4.88e-12 65.9
MS.gene037649.t1 MTR_8g445910 33.673 98 56 2 268 362 8 99 8.50e-12 66.2
MS.gene037649.t1 MTR_8g044880 38.095 84 48 2 268 348 8 90 2.09e-11 65.1
MS.gene037649.t1 MTR_8g445920 37.879 66 41 0 268 333 10 75 3.48e-11 60.8
MS.gene037649.t1 MTR_8g044890 37.879 66 41 0 268 333 10 75 3.48e-11 60.8
MS.gene037649.t1 MTR_6g006800 60.870 46 16 1 1 44 1 46 7.45e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037649.t1 AT5G01120 31.323 514 309 12 1 499 1 485 1.28e-61 211
MS.gene037649.t1 AT5G43240 31.801 522 300 14 1 499 1 489 1.21e-60 208
MS.gene037649.t1 AT5G43240 31.801 522 300 14 1 499 1 489 1.21e-60 208
MS.gene037649.t1 AT5G43240 31.801 522 300 14 1 499 1 489 1.21e-60 208
MS.gene037649.t1 AT5G01130 31.213 503 281 13 1 500 1 441 1.49e-59 204
MS.gene037649.t1 AT3G09140 31.450 531 290 17 1 499 1 489 1.18e-56 197
MS.gene037649.t1 AT5G01150 31.629 528 279 16 1 499 1 475 3.95e-53 188
MS.gene037649.t1 AT3G09140 29.875 559 290 18 1 499 1 517 2.06e-51 184
MS.gene037649.t1 AT5G01140 30.556 540 299 18 1 532 1 472 3.83e-51 182
MS.gene037649.t1 AT3G09110 34.513 339 191 8 1 329 1 318 2.55e-49 174
MS.gene037649.t1 AT3G09120 35.435 333 177 12 6 322 3 313 4.61e-46 164
MS.gene037649.t1 AT3G09120 29.289 239 145 8 268 497 6 229 5.68e-16 79.3
MS.gene037649.t1 AT5G37320 28.405 514 292 16 16 504 18 480 2.47e-43 161
MS.gene037649.t1 AT5G43240 29.917 361 216 9 155 499 6 345 6.98e-30 120

Find 121 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAAACAACCTAAGAATT+TGG 0.172998 4.3:+79638918 MS.gene037649:CDS
GTTGTTGTTGATCATTGTTC+TGG 0.207317 4.3:-79638630 None:intergenic
GTCAAATTTGAATCTTGTTT+TGG 0.259105 4.3:-79642706 None:intergenic
TGGTAGGTTATCTTTCTTCT+TGG 0.272752 4.3:-79641532 None:intergenic
ACCATCCAAAACCTTTATAA+TGG 0.287548 4.3:-79641715 None:intergenic
ACCATTAGGGTCCATTATAA+AGG 0.300457 4.3:+79641704 MS.gene037649:CDS
CTCACCACTACATATTATTA+TGG 0.301079 4.3:+79641894 MS.gene037649:CDS
CCCTCAGAATCCAAATTCTT+AGG 0.303798 4.3:-79638928 None:intergenic
ATGCACCCGTGACATTAAAA+TGG 0.306519 4.3:+79641587 MS.gene037649:CDS
CAGGGGAATGAGGTTCAAAA+TGG 0.309879 4.3:+79638952 MS.gene037649:CDS
GAAGGTTGTGCCTAGTTCTT+TGG 0.316285 4.3:+79639023 MS.gene037649:CDS
GTGAAGAGACCCGCATTATA+TGG 0.323290 4.3:+79642098 MS.gene037649:CDS
CGTAAATCCCTTTCTTGCTT+TGG 0.330917 4.3:-79641927 None:intergenic
ATGCAGATGTTGGTGGAGTT+AGG 0.331679 4.3:+79639054 MS.gene037649:CDS
ATCGATTTGTTAGGAGATCT+TGG 0.333599 4.3:-79642056 None:intergenic
ATAACTCAGTCTTCTAGTTT+AGG 0.333889 4.3:-79642775 None:intergenic
AGGGTCCATTATAAAGGTTT+TGG 0.333963 4.3:+79641710 MS.gene037649:CDS
AATGATTCACATGGATTCTT+CGG 0.347163 4.3:-79638775 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.351633 4.3:+79641690 MS.gene037649:CDS
AACAACATTTGTTTACAAAC+AGG 0.351918 4.3:-79638748 None:intergenic
ATTTGTCAATGGCTCATTAG+AGG 0.354868 4.3:-79641490 None:intergenic
GAGCGTGTCAACGAAGTCTT+TGG 0.365421 4.3:-79638557 None:intergenic
CTCTGACTGCTGATGCAAAC+TGG 0.370802 4.3:-79641557 None:intergenic
TTCAAAATTGTATTTGTCAA+TGG 0.373137 4.3:-79641501 None:intergenic
ACATCTTTAATCGATTTGTT+AGG 0.375546 4.3:-79642065 None:intergenic
GAATTTGGATTCTGAGGGTC+AGG 0.378169 4.3:+79638933 MS.gene037649:CDS
CATTGTTCTGGGTGGTTAAG+AGG 0.378910 4.3:-79638618 None:intergenic
CACACACAACATTGGAAAAC+AGG 0.378988 4.3:+79639107 MS.gene037649:CDS
CCCTCACTCCAAATGATGTT+TGG 0.379098 4.3:+79638722 MS.gene037649:CDS
ACAGGGTTCCAAACATCATT+TGG 0.379669 4.3:-79638730 None:intergenic
GCTTCCTTACAATACCATTA+GGG 0.381396 4.3:+79641691 MS.gene037649:CDS
TAGAGAACTTGGACTCTTCC+TGG 0.392959 4.3:+79641778 MS.gene037649:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4.3:-79641858 None:intergenic
TTCTGATTTGAGTCAATTAG+AGG 0.405222 4.3:+79639080 MS.gene037649:CDS
ATTCTTAGGTTGTTTATTAG+TGG 0.415277 4.3:-79638914 None:intergenic
TTGTTGTTGATCATTGTTCT+GGG 0.419373 4.3:-79638629 None:intergenic
AAGATAATCTTTGCAGAAAC+CGG 0.426804 4.3:+79641642 MS.gene037649:CDS
TTTGGTGTTTGATGATTTGA+AGG 0.426957 4.3:+79639005 MS.gene037649:CDS
TACTTCTACTGTGTTATAAC+GGG 0.437052 4.3:-79641961 None:intergenic
GTACTTCTACTGTGTTATAA+CGG 0.438712 4.3:-79641962 None:intergenic
CAGAATCTTGATTGTACTTG+TGG 0.438965 4.3:+79638886 MS.gene037649:CDS
TTCTTAGGTTGTTTATTAGT+GGG 0.444372 4.3:-79638913 None:intergenic
ATAAATTGATCCCATTGTCT+TGG 0.445414 4.3:-79642006 None:intergenic
ACTAGTTTGAACATACTTTG+AGG 0.450250 4.3:-79642728 None:intergenic
ACTGCTGATGCAAACTGGTT+TGG 0.450650 4.3:-79641552 None:intergenic
CAGGAACACCAAAGCAAGAA+AGG 0.451058 4.3:+79641919 MS.gene037649:CDS
TGCAGATGTTGGTGGAGTTA+GGG 0.452689 4.3:+79639055 MS.gene037649:CDS
AGGGGAATGAGGTTCAAAAT+GGG 0.466903 4.3:+79638953 MS.gene037649:CDS
CCTGGTGTCGCACCACAGTT+TGG 0.469731 4.3:+79641831 MS.gene037649:CDS
ACCTAAGAATTTGGATTCTG+AGG 0.484684 4.3:+79638927 MS.gene037649:CDS
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4.3:-79641863 None:intergenic
CCAAACATCATTTGGAGTGA+GGG 0.493650 4.3:-79638722 None:intergenic
GGTTGTGCCTAGTTCTTTGG+TGG 0.496010 4.3:+79639026 MS.gene037649:CDS
CGCTCCGCGTTACTCAATCC+TGG 0.496411 4.3:+79641813 MS.gene037649:CDS
CAAAGTATGTTCAAACTAGT+AGG 0.498481 4.3:+79642731 MS.gene037649:CDS
ACCTTTATAATGGACCCTAA+TGG 0.499664 4.3:-79641705 None:intergenic
CCAAACTGTGGTGCGACACC+AGG 0.503303 4.3:-79641831 None:intergenic
TCTTGGATCCATTGCAGTCA+AGG 0.503976 4.3:-79642039 None:intergenic
TCAGAATCAACATCATTCCT+TGG 0.510478 4.3:+79638667 MS.gene037649:CDS
GTACAAGAGTGTAGAGAACT+TGG 0.512946 4.3:+79641767 MS.gene037649:CDS
TAGTAGCAAGTGGAAAAGAA+AGG 0.514187 4.3:-79638588 None:intergenic
GGTGGCTTCCATGCAGATGT+TGG 0.516496 4.3:+79639044 MS.gene037649:CDS
TTCTGAGGGTCAGGGGAATG+AGG 0.516607 4.3:+79638942 MS.gene037649:CDS
TGGACCCTAATGGTATTGTA+AGG 0.519001 4.3:-79641695 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.521118 4.3:+79641900 MS.gene037649:CDS
TGAATATTGATGACACTGAA+TGG 0.522820 4.3:+79638815 MS.gene037649:CDS
TGCAAAAGCCTTGACTGCAA+TGG 0.525800 4.3:+79642031 MS.gene037649:CDS
CACAGTAGAAGTACCGGTAG+TGG 0.526410 4.3:+79641971 MS.gene037649:CDS
AGACCCGCATTATATGGTAT+AGG 0.533415 4.3:+79642104 MS.gene037649:CDS
ATGGAAGCCACCAAAGAACT+AGG 0.533783 4.3:-79639033 None:intergenic
GGAGTGATTTCCAAGACAAT+GGG 0.534615 4.3:+79641996 MS.gene037649:CDS
CTTGGACTCTTCCTGGTGTA+CGG 0.536964 4.3:+79641785 MS.gene037649:CDS
CAAATCGATTAAAGATGTGG+TGG 0.538504 4.3:+79642070 MS.gene037649:CDS
GAAATCACTCCTCCCACTAC+CGG 0.538904 4.3:-79641984 None:intergenic
TCAAAATTTACACTGACTAG+TGG 0.539589 4.3:+79642661 MS.gene037649:CDS
TCAATTCTTTCAAATATGAA+AGG 0.542776 4.3:-79642166 None:intergenic
TTGATGTCAAAGAGGCTGCT+AGG 0.544211 4.3:-79642642 None:intergenic
GGCTTCCATGCAGATGTTGG+TGG 0.546842 4.3:+79639047 MS.gene037649:CDS
AGGAGTGATTTCCAAGACAA+TGG 0.549627 4.3:+79641995 MS.gene037649:CDS
CCTAAGAATTTGGATTCTGA+GGG 0.549967 4.3:+79638928 MS.gene037649:CDS
AAGGAATGATGTTGATTCTG+AGG 0.560176 4.3:-79638665 None:intergenic
TAACAAATCGATTAAAGATG+TGG 0.562938 4.3:+79642067 MS.gene037649:CDS
TTTCACTTCAAGATCGCCAA+GGG 0.563924 4.3:-79642195 None:intergenic
TCCAAACATCATTTGGAGTG+AGG 0.565006 4.3:-79638723 None:intergenic
AGGAACACCAAAGCAAGAAA+GGG 0.568229 4.3:+79641920 MS.gene037649:CDS
AAAGAATTGAGCTTTCCCCT+TGG 0.571373 4.3:+79642179 MS.gene037649:CDS
GGAGCGCGAGTCCGTACACC+AGG 0.576521 4.3:-79641796 None:intergenic
ATTTGGATTCTGAGGGTCAG+GGG 0.580968 4.3:+79638935 MS.gene037649:CDS
GAGGAAGTCACACACAACAT+TGG 0.582955 4.3:+79639099 MS.gene037649:CDS
TTGTACATGAGGAATGTTGA+GGG 0.587586 4.3:-79641868 None:intergenic
TAGGCTTGATGAACTCGCTA+AGG 0.587970 4.3:+79642750 MS.gene037649:CDS
ATCTCCTATACCATATAATG+CGG 0.589870 4.3:-79642108 None:intergenic
TCTCCTATACCATATAATGC+GGG 0.591601 4.3:-79642107 None:intergenic
CTGATGCAAACTGGTTTGGT+AGG 0.598901 4.3:-79641548 None:intergenic
ACAACATTTGTTTACAAACA+GGG 0.599887 4.3:-79638747 None:intergenic
AAATCGATTAAAGATGTGGT+GGG 0.605850 4.3:+79642071 MS.gene037649:CDS
TTATAACACAGTAGAAGTAC+CGG 0.606568 4.3:+79641965 MS.gene037649:CDS
ACAGTAGAAGTACCGGTAGT+GGG 0.610535 4.3:+79641972 MS.gene037649:CDS
AATTTGGATTCTGAGGGTCA+GGG 0.610725 4.3:+79638934 MS.gene037649:CDS
TAACTCCACCAACATCTGCA+TGG 0.611734 4.3:-79639052 None:intergenic
CTTTCACTTCAAGATCGCCA+AGG 0.614269 4.3:-79642196 None:intergenic
GATAAGCATTGGTGAAGCTG+AGG 0.615886 4.3:+79642220 MS.gene037649:CDS
TTCTTGCATAATGATTCACA+TGG 0.617558 4.3:-79638784 None:intergenic
AGGCTAAGCTGTACTTGAGG+AGG 0.619347 4.3:-79641470 None:intergenic
TTGTTGATCATTGTTCTGGG+TGG 0.622500 4.3:-79638626 None:intergenic
AGGCGAATGATAGTAGCAAG+TGG 0.630753 4.3:-79638598 None:intergenic
GTGGTGAGTGTTTGTACATG+AGG 0.631505 4.3:-79641879 None:intergenic
GGGTTTGTACGCTTTCATAG+AGG 0.642551 4.3:-79638702 None:intergenic
GAAGTGAAAGTGATAAGCAT+TGG 0.646678 4.3:+79642209 MS.gene037649:CDS
TGTACCATAATAATATGTAG+TGG 0.647988 4.3:-79641898 None:intergenic
GGGGAATGAGGTTCAAAATG+GGG 0.661152 4.3:+79638954 MS.gene037649:CDS
TAGAGGCTAAGCTGTACTTG+AGG 0.670253 4.3:-79641473 None:intergenic
ATGTCAAAGAGGCTGCTAGG+AGG 0.681764 4.3:-79642639 None:intergenic
GATCAACAACAACTAGAACA+AGG 0.684470 4.3:+79638640 MS.gene037649:CDS
GTAGAAGTACCGGTAGTGGG+AGG 0.686576 4.3:+79641975 MS.gene037649:CDS
ACACAACATTGGAAAACAGG+AGG 0.691626 4.3:+79639110 MS.gene037649:CDS
TTCACTTCAAGATCGCCAAG+GGG 0.708819 4.3:-79642194 None:intergenic
TGTACATGAGGAATGTTGAG+GGG 0.709478 4.3:-79641867 None:intergenic
TTTGTACATGAGGAATGTTG+AGG 0.712351 4.3:-79641869 None:intergenic
TGGTTTGGACAACCAAACTG+TGG 0.732553 4.3:-79641843 None:intergenic
GACACCAGGATTGAGTAACG+CGG 0.813956 4.3:-79641817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATGAAAATAGAAAA+TGG + chr4.3:79641183-79641202 MS.gene037649:intron 10.0%
!! AAGTTCAAACAATAAATTAT+AGG - chr4.3:79639978-79639997 None:intergenic 15.0%
!! TTAGTTGTATTTATTAATCA+AGG + chr4.3:79640881-79640900 MS.gene037649:intron 15.0%
!!! TTTTAAATTTTGATACATTC+AGG + chr4.3:79642501-79642520 MS.gene037649:intron 15.0%
!! AAAAAGATGATGTAATAAGT+AGG + chr4.3:79640207-79640226 MS.gene037649:intron 20.0%
!! AAAGAATATAAAGGAAAGTA+AGG + chr4.3:79640141-79640160 MS.gene037649:intron 20.0%
!! AATGGTTTCACAAAATTAAA+CGG + chr4.3:79641201-79641220 MS.gene037649:intron 20.0%
!! ATTTGCCATTAAAATAAACT+TGG + chr4.3:79640808-79640827 MS.gene037649:intron 20.0%
!! TAACAGAATGTAATAAGTAA+GGG + chr4.3:79640469-79640488 MS.gene037649:intron 20.0%
!! TAATAAACAACCTAAGAATT+TGG + chr4.3:79638918-79638937 MS.gene037649:CDS 20.0%
!! TCAATTCTTTCAAATATGAA+AGG - chr4.3:79642169-79642188 None:intergenic 20.0%
!! TTCAAAATTGTATTTGTCAA+TGG - chr4.3:79641504-79641523 None:intergenic 20.0%
!! TTTGCCATTAAAATAAACTT+GGG + chr4.3:79640809-79640828 MS.gene037649:intron 20.0%
!!! AAATACAACTAACACATTTT+AGG - chr4.3:79640873-79640892 None:intergenic 20.0%
!!! AGTTTTGAAAAAAAAACTGT+AGG + chr4.3:79639556-79639575 MS.gene037649:intron 20.0%
!!! TATATAACTTGATGCTTTTT+GGG + chr4.3:79640048-79640067 MS.gene037649:intron 20.0%
!!! TTAATTAGTGTTTTTGTCAT+TGG + chr4.3:79641248-79641267 MS.gene037649:intron 20.0%
! AACAACATTTGTTTACAAAC+AGG - chr4.3:79638751-79638770 None:intergenic 25.0%
! AACAATAACTCACACATTTA+AGG + chr4.3:79642533-79642552 MS.gene037649:intron 25.0%
! AATATAAAGGAAAGTAAGGA+GGG + chr4.3:79640145-79640164 MS.gene037649:intron 25.0%
! AATGGAAAGGAAAATAAGTA+GGG + chr4.3:79640413-79640432 MS.gene037649:intron 25.0%
! AATTAAACAATGAGCCATTA+AGG - chr4.3:79641234-79641253 None:intergenic 25.0%
! ACAAACAAGTTTACATTACT+TGG - chr4.3:79641408-79641427 None:intergenic 25.0%
! ACAACATTTGTTTACAAACA+GGG - chr4.3:79638750-79638769 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG + chr4.3:79641900-79641919 MS.gene037649:CDS 25.0%
! ATAAGATAAAATGCTAGCTA+GGG - chr4.3:79641061-79641080 None:intergenic 25.0%
! ATGGTTTCACAAAATTAAAC+GGG + chr4.3:79641202-79641221 MS.gene037649:intron 25.0%
! CTATGTGAGAAAGAATATAA+AGG + chr4.3:79640132-79640151 MS.gene037649:intron 25.0%
! CTTTATATTCTTTCTCACAT+AGG - chr4.3:79640134-79640153 None:intergenic 25.0%
! GAAAGTTCATAATTCAAGAA+TGG - chr4.3:79640024-79640043 None:intergenic 25.0%
! GGAAAAAAATTATAAACTGC+AGG - chr4.3:79640549-79640568 None:intergenic 25.0%
! GTAACAGAATGTAATAAGTA+AGG + chr4.3:79640468-79640487 MS.gene037649:intron 25.0%
! GTTGGTTGTATTTATTAACA+AGG + chr4.3:79640910-79640929 MS.gene037649:intron 25.0%
! TAACAAATCGATTAAAGATG+TGG + chr4.3:79642067-79642086 MS.gene037649:CDS 25.0%
! TACAAGATGTTAAAACGAAA+CGG - chr4.3:79641379-79641398 None:intergenic 25.0%
! TATTAACAAGGAAAATGTGT+CGG + chr4.3:79640922-79640941 MS.gene037649:intron 25.0%
! TATTAATCAAGGAAATGTGT+TGG + chr4.3:79640892-79640911 MS.gene037649:intron 25.0%
! TCCTAAAACTTAAGATAGTT+TGG + chr4.3:79640321-79640340 MS.gene037649:intron 25.0%
! TGTACCATAATAATATGTAG+TGG - chr4.3:79641901-79641920 None:intergenic 25.0%
! TTCAATGTAATCATAAGTGT+CGG - chr4.3:79639301-79639320 None:intergenic 25.0%
! TTGCCATTAAAATAAACTTG+GGG + chr4.3:79640810-79640829 MS.gene037649:intron 25.0%
!! AAATGTTTTCACAAAGTACA+CGG - chr4.3:79640837-79640856 None:intergenic 25.0%
!! AAGAGAGTAAATAACCATTT+TGG - chr4.3:79642560-79642579 None:intergenic 25.0%
!! ATTCTTAGGTTGTTTATTAG+TGG - chr4.3:79638917-79638936 None:intergenic 25.0%
!! CTATATAACTTGATGCTTTT+TGG + chr4.3:79640047-79640066 MS.gene037649:intron 25.0%
!! CTTAGGTTTACTTGTTAATA+AGG - chr4.3:79641123-79641142 None:intergenic 25.0%
!! TACTTGTTCTTTATTTCAAG+AGG - chr4.3:79641147-79641166 None:intergenic 25.0%
!! TCCAAACTATCTTAAGTTTT+AGG - chr4.3:79640325-79640344 None:intergenic 25.0%
!! TTCTTAGGTTGTTTATTAGT+GGG - chr4.3:79638916-79638935 None:intergenic 25.0%
!!! ACATCTTTAATCGATTTGTT+AGG - chr4.3:79642068-79642087 None:intergenic 25.0%
!!! CAAAAAGCATCAAGTTATAT+AGG - chr4.3:79640049-79640068 None:intergenic 25.0%
!!! GTCAAATTTGAATCTTGTTT+TGG - chr4.3:79642709-79642728 None:intergenic 25.0%
!!! TAACATCCATTTTAATGTCA+CGG - chr4.3:79641596-79641615 None:intergenic 25.0%
!!! TGTAAATTTTGATGTCAAAG+AGG - chr4.3:79642653-79642672 None:intergenic 25.0%
AAAGTGCAAACCATAAAGAA+GGG - chr4.3:79642607-79642626 None:intergenic 30.0%
AAATCGATTAAAGATGTGGT+GGG + chr4.3:79642071-79642090 MS.gene037649:CDS 30.0%
AACCTCAAAGGGAATTAATT+GGG + chr4.3:79640667-79640686 MS.gene037649:intron 30.0%
AAGATAATCTTTGCAGAAAC+CGG + chr4.3:79641642-79641661 MS.gene037649:CDS 30.0%
AAGATGATGTAATAAGTAGG+AGG + chr4.3:79640210-79640229 MS.gene037649:intron 30.0%
AAGTAAGGAGGGAAATAAAT+TGG + chr4.3:79640156-79640175 MS.gene037649:intron 30.0%
AATGATTCACATGGATTCTT+CGG - chr4.3:79638778-79638797 None:intergenic 30.0%
ACCATCCAAAACCTTTATAA+TGG - chr4.3:79641718-79641737 None:intergenic 30.0%
ACTACAAGAAAACACATTCA+GGG - chr4.3:79642364-79642383 None:intergenic 30.0%
AGAACTATGTTGTTAATCGT+TGG + chr4.3:79639753-79639772 MS.gene037649:intron 30.0%
AGATGATGTAATAAGTAGGA+GGG + chr4.3:79640211-79640230 MS.gene037649:intron 30.0%
AGTTTGGATTTGACATAGTA+AGG + chr4.3:79640337-79640356 MS.gene037649:intron 30.0%
ATAAATTGATCCCATTGTCT+TGG - chr4.3:79642009-79642028 None:intergenic 30.0%
ATCTCCTATACCATATAATG+CGG - chr4.3:79642111-79642130 None:intergenic 30.0%
CAAAGTATGTTCAAACTAGT+AGG + chr4.3:79642731-79642750 MS.gene037649:CDS 30.0%
CTCACCACTACATATTATTA+TGG + chr4.3:79641894-79641913 MS.gene037649:CDS 30.0%
GAATATAAAGGAAAGTAAGG+AGG + chr4.3:79640144-79640163 MS.gene037649:intron 30.0%
GAATGGAAAGGAAAATAAGT+AGG + chr4.3:79640412-79640431 MS.gene037649:intron 30.0%
GAATTGCAATAGGAATTCAA+TGG - chr4.3:79640621-79640640 None:intergenic 30.0%
GATAAGATAAAATGCTAGCT+AGG - chr4.3:79641062-79641081 None:intergenic 30.0%
GGAAAAAGATGAACTTTATC+AGG - chr4.3:79640600-79640619 None:intergenic 30.0%
GTACTTCTACTGTGTTATAA+CGG - chr4.3:79641965-79641984 None:intergenic 30.0%
GTTTGGATTTGACATAGTAA+GGG + chr4.3:79640338-79640357 MS.gene037649:intron 30.0%
TAATAAGTAGGAGGGAATAA+GGG + chr4.3:79640219-79640238 MS.gene037649:intron 30.0%
TAATTGGGTAAAAGAGAAGA+TGG + chr4.3:79640682-79640701 MS.gene037649:intron 30.0%
TACTACAAGAAAACACATTC+AGG - chr4.3:79642365-79642384 None:intergenic 30.0%
TACTTCTACTGTGTTATAAC+GGG - chr4.3:79641964-79641983 None:intergenic 30.0%
TCAATGTAATCATAAGTGTC+GGG - chr4.3:79639300-79639319 None:intergenic 30.0%
TGAATCATTGTTCCAAATTG+TGG + chr4.3:79639610-79639629 MS.gene037649:intron 30.0%
TTCTTGCATAATGATTCACA+TGG - chr4.3:79638787-79638806 None:intergenic 30.0%
TTGATACCAAAGTTACTCTA+AGG - chr4.3:79641301-79641320 None:intergenic 30.0%
TTTGAACTTTGAACTTGCAT+TGG + chr4.3:79639989-79640008 MS.gene037649:intron 30.0%
! ACTAGTTTGAACATACTTTG+AGG - chr4.3:79642731-79642750 None:intergenic 30.0%
! CTGTCTATTAAGATTTTCAG+TGG - chr4.3:79638505-79638524 None:intergenic 30.0%
! GGGTTTTTGTTAAGGAAAAT+GGG + chr4.3:79638974-79638993 MS.gene037649:CDS 30.0%
! GTTTCAGTCTAGGATTATTT+GGG + chr4.3:79639778-79639797 MS.gene037649:intron 30.0%
! TCAAAATGGGGTTTTTGTTA+AGG + chr4.3:79638966-79638985 MS.gene037649:CDS 30.0%
! TCAAAATTTACACTGACTAG+TGG + chr4.3:79642661-79642680 MS.gene037649:CDS 30.0%
! TCTTTATTTCAAGAGGTCTT+AGG - chr4.3:79641140-79641159 None:intergenic 30.0%
! TGAATATTGATGACACTGAA+TGG + chr4.3:79638815-79638834 MS.gene037649:CDS 30.0%
! TGTTTCAGTCTAGGATTATT+TGG + chr4.3:79639777-79639796 MS.gene037649:intron 30.0%
! TTATAACACAGTAGAAGTAC+CGG + chr4.3:79641965-79641984 MS.gene037649:CDS 30.0%
! TTCTGATTTGAGTCAATTAG+AGG + chr4.3:79639080-79639099 MS.gene037649:CDS 30.0%
! TTGTTGTTGATCATTGTTCT+GGG - chr4.3:79638632-79638651 None:intergenic 30.0%
! TTTAAAGTGAGTCTTTGTGA+TGG - chr4.3:79641086-79641105 None:intergenic 30.0%
!! AACATCCATTTTAATGTCAC+GGG - chr4.3:79641595-79641614 None:intergenic 30.0%
!! AAGCGTTATCATTTTAGTCT+AGG + chr4.3:79639812-79639831 MS.gene037649:intron 30.0%
!! TCGCAATATAAAGGTTTTAG+AGG - chr4.3:79639705-79639724 None:intergenic 30.0%
!! TTTGGTGTTTGATGATTTGA+AGG + chr4.3:79639005-79639024 MS.gene037649:CDS 30.0%
!!! TCCATTATAAAGGTTTTGGA+TGG + chr4.3:79641714-79641733 MS.gene037649:CDS 30.0%
AAAACTCAGTATGCAGTTCA+AGG - chr4.3:79639542-79639561 None:intergenic 35.0%
AAATAAGTAGGGAAATCGAG+TGG + chr4.3:79640424-79640443 MS.gene037649:intron 35.0%
AACAATGAGCCATTAAGGTA+AGG - chr4.3:79641229-79641248 None:intergenic 35.0%
AACACTCCTTAGAGTAACTT+TGG + chr4.3:79641292-79641311 MS.gene037649:intron 35.0%
ACCATTAGGGTCCATTATAA+AGG + chr4.3:79641704-79641723 MS.gene037649:CDS 35.0%
ACCTAAGAATTTGGATTCTG+AGG + chr4.3:79638927-79638946 MS.gene037649:CDS 35.0%
AGAGAAAGATTTCTCCTTCA+AGG + chr4.3:79640734-79640753 MS.gene037649:intron 35.0%
AGCTTCCTTACAATACCATT+AGG + chr4.3:79641690-79641709 MS.gene037649:CDS 35.0%
AGTTCAAGGACCAACTAATT+TGG - chr4.3:79639528-79639547 None:intergenic 35.0%
ATTTGTCAATGGCTCATTAG+AGG - chr4.3:79641493-79641512 None:intergenic 35.0%
CAAAGTGCAAACCATAAAGA+AGG - chr4.3:79642608-79642627 None:intergenic 35.0%
CAAATCGATTAAAGATGTGG+TGG + chr4.3:79642070-79642089 MS.gene037649:CDS 35.0%
CAATTGCAGTCGCAATATAA+AGG - chr4.3:79639714-79639733 None:intergenic 35.0%
CACACATTTAAGGACCAAAA+TGG + chr4.3:79642543-79642562 MS.gene037649:intron 35.0%
CAGAATCTTGATTGTACTTG+TGG + chr4.3:79638886-79638905 MS.gene037649:CDS 35.0%
CCTAAGAATTTGGATTCTGA+GGG + chr4.3:79638928-79638947 MS.gene037649:CDS 35.0%
GAACCTCAAAGGGAATTAAT+TGG + chr4.3:79640666-79640685 MS.gene037649:intron 35.0%
GAAGGAGAAATCTTTCTCTT+TGG - chr4.3:79640733-79640752 None:intergenic 35.0%
GAAGTGAAAGTGATAAGCAT+TGG + chr4.3:79642209-79642228 MS.gene037649:CDS 35.0%
GAGAAAGATTTCTCCTTCAA+GGG + chr4.3:79640735-79640754 MS.gene037649:intron 35.0%
GATCAACAACAACTAGAACA+AGG + chr4.3:79638640-79638659 MS.gene037649:CDS 35.0%
GATTTGTCTCCCAAATTAGT+TGG + chr4.3:79639515-79639534 MS.gene037649:intron 35.0%
GCTTCCTTACAATACCATTA+GGG + chr4.3:79641691-79641710 MS.gene037649:CDS 35.0%
GTAATAAGTAGGAGGGAATA+AGG + chr4.3:79640218-79640237 MS.gene037649:intron 35.0%
GTTCAAGGACCAACTAATTT+GGG - chr4.3:79639527-79639546 None:intergenic 35.0%
GTTGTAACTGATATAGCTGA+GGG + chr4.3:79640446-79640465 MS.gene037649:intron 35.0%
GTTGTTGATACCCTTCTTTA+TGG + chr4.3:79642594-79642613 MS.gene037649:intron 35.0%
GTTTCAAAATGCTACTCGAA+CGG + chr4.3:79639864-79639883 MS.gene037649:intron 35.0%
TACAGAAGTAAGTGAGAACT+GGG + chr4.3:79640497-79640516 MS.gene037649:intron 35.0%
TACCCAATTAATTCCCTTTG+AGG - chr4.3:79640672-79640691 None:intergenic 35.0%
TAGTAGCAAGTGGAAAAGAA+AGG - chr4.3:79638591-79638610 None:intergenic 35.0%
TCAGAATCAACATCATTCCT+TGG + chr4.3:79638667-79638686 MS.gene037649:CDS 35.0%
TCTAGGCTTAGTTAGAATTC+TGG + chr4.3:79639829-79639848 MS.gene037649:intron 35.0%
TCTCCTATACCATATAATGC+GGG - chr4.3:79642110-79642129 None:intergenic 35.0%
TCTTCTGATGTATCTTCCAT+TGG - chr4.3:79642407-79642426 None:intergenic 35.0%
TGGTAGGTTATCTTTCTTCT+TGG - chr4.3:79641535-79641554 None:intergenic 35.0%
TTACAGAAGTAAGTGAGAAC+TGG + chr4.3:79640496-79640515 MS.gene037649:intron 35.0%
TTATTCACGAAAGTGACCAA+TGG + chr4.3:79642388-79642407 MS.gene037649:intron 35.0%
TTCAGTTTAACCCTTGTATG+TGG - chr4.3:79642450-79642469 None:intergenic 35.0%
TTGTACATGAGGAATGTTGA+GGG - chr4.3:79641871-79641890 None:intergenic 35.0%
TTTGAGTAAACCCGAGAATT+GGG + chr4.3:79639199-79639218 MS.gene037649:intron 35.0%
TTTGTACATGAGGAATGTTG+AGG - chr4.3:79641872-79641891 None:intergenic 35.0%
! AACCTCATAAGAGTGCATTA+AGG + chr4.3:79640373-79640392 MS.gene037649:intron 35.0%
! AGGGTCCATTATAAAGGTTT+TGG + chr4.3:79641710-79641729 MS.gene037649:CDS 35.0%
! CAATGTAATCATAAGTGTCG+GGG - chr4.3:79639299-79639318 None:intergenic 35.0%
! GAAGTCAACAAAGTTTTCAC+CGG - chr4.3:79641664-79641683 None:intergenic 35.0%
! GGGGTTTTTGTTAAGGAAAA+TGG + chr4.3:79638973-79638992 MS.gene037649:CDS 35.0%
! GTCGGTTGTATTTGTTAACA+AGG + chr4.3:79640940-79640959 MS.gene037649:intron 35.0%
! GTTGTTGTTGATCATTGTTC+TGG - chr4.3:79638633-79638652 None:intergenic 35.0%
! TTCTGATTGAAGGTGTGTTT+AGG + chr4.3:79639250-79639269 MS.gene037649:intron 35.0%
! TTGGATGGTAACTCTTTTGT+TGG + chr4.3:79641729-79641748 MS.gene037649:CDS 35.0%
!! AAGGAATGATGTTGATTCTG+AGG - chr4.3:79638668-79638687 None:intergenic 35.0%
!! ACCTTTATAATGGACCCTAA+TGG - chr4.3:79641708-79641727 None:intergenic 35.0%
!! ATCGATTTGTTAGGAGATCT+TGG - chr4.3:79642059-79642078 None:intergenic 35.0%
!! TCTGTTAGTTTGCAGCTTAT+CGG - chr4.3:79640188-79640207 None:intergenic 35.0%
!! TTTTGAGTAAACCCGAGAAT+TGG + chr4.3:79639198-79639217 MS.gene037649:intron 35.0%
!!! CTTTTTGGGTAGGATGTATT+TGG + chr4.3:79640062-79640081 MS.gene037649:intron 35.0%
!!! GGACCCCAAGTTTATTTTAA+TGG - chr4.3:79640816-79640835 None:intergenic 35.0%
!!! TAACTTGATGCTTTTTGGGT+AGG + chr4.3:79640052-79640071 MS.gene037649:intron 35.0%
AAAGAATTGAGCTTTCCCCT+TGG + chr4.3:79642179-79642198 MS.gene037649:CDS 40.0%
ACACAACATTGGAAAACAGG+AGG + chr4.3:79639110-79639129 MS.gene037649:CDS 40.0%
ACAGGGTTCCAAACATCATT+TGG - chr4.3:79638733-79638752 None:intergenic 40.0%
ACTAGCTAGCCCACAAAAAT+TGG - chr4.3:79639450-79639469 None:intergenic 40.0%
ACTGCAGGCTAATTTAAGAG+TGG - chr4.3:79640534-79640553 None:intergenic 40.0%
AGACCCGCATTATATGGTAT+AGG + chr4.3:79642104-79642123 MS.gene037649:CDS 40.0%
AGAGCCACTACTCATATACA+AGG - chr4.3:79640767-79640786 None:intergenic 40.0%
AGCCACTACTCATATACAAG+GGG - chr4.3:79640765-79640784 None:intergenic 40.0%
AGGAACACCAAAGCAAGAAA+GGG + chr4.3:79641920-79641939 MS.gene037649:CDS 40.0%
AGGAGTGATTTCCAAGACAA+TGG + chr4.3:79641995-79642014 MS.gene037649:CDS 40.0%
AGGGGAATGAGGTTCAAAAT+GGG + chr4.3:79638953-79638972 MS.gene037649:CDS 40.0%
ATAGGGTTCAACAACACTTG+AGG - chr4.3:79640645-79640664 None:intergenic 40.0%
ATGCACCCGTGACATTAAAA+TGG + chr4.3:79641587-79641606 MS.gene037649:CDS 40.0%
CACACACAACATTGGAAAAC+AGG + chr4.3:79639107-79639126 MS.gene037649:CDS 40.0%
CACCTTAATGCACTCTTATG+AGG - chr4.3:79640378-79640397 None:intergenic 40.0%
CATTGGAAAACAGGAGGTAA+TGG + chr4.3:79639116-79639135 MS.gene037649:intron 40.0%
CCCTCAGAATCCAAATTCTT+AGG - chr4.3:79638931-79638950 None:intergenic 40.0%
CCTTGTATGTGGTCTTTCAT+CGG - chr4.3:79642439-79642458 None:intergenic 40.0%
CGATGAAAGACCACATACAA+GGG + chr4.3:79642437-79642456 MS.gene037649:intron 40.0%
CGTAAATCCCTTTCTTGCTT+TGG - chr4.3:79641930-79641949 None:intergenic 40.0%
CTATGCGAGAAAGAATGGAA+AGG + chr4.3:79640400-79640419 MS.gene037649:intron 40.0%
GACATCGTCTCACATGTTTA+AGG - chr4.3:79642305-79642324 None:intergenic 40.0%
GAGCCACTACTCATATACAA+GGG - chr4.3:79640766-79640785 None:intergenic 40.0%
GAGTTTGTAGAGTAAGACCA+TGG + chr4.3:79639362-79639381 MS.gene037649:intron 40.0%
GCAATTGTGGTTGCATATCA+AGG - chr4.3:79639660-79639679 None:intergenic 40.0%
GGAGTGATTTCCAAGACAAT+GGG + chr4.3:79641996-79642015 MS.gene037649:CDS 40.0%
GGTTGTAACTGATATAGCTG+AGG + chr4.3:79640445-79640464 MS.gene037649:intron 40.0%
TAAACGGGTCCTTACCTTAA+TGG + chr4.3:79641217-79641236 MS.gene037649:intron 40.0%
TAACGTGACATCCCAATTCT+CGG - chr4.3:79639213-79639232 None:intergenic 40.0%
TAGGGTTCAACAACACTTGA+GGG - chr4.3:79640644-79640663 None:intergenic 40.0%
TCTCGAACTCATTAATCGTC+AGG - chr4.3:79639909-79639928 None:intergenic 40.0%
TCTGATCCTATTGATCCAGA+GGG + chr4.3:79640569-79640588 MS.gene037649:intron 40.0%
TGCAGAATTAGGTGTGAACT+GGG + chr4.3:79640242-79640261 MS.gene037649:intron 40.0%
TGGACCCTAATGGTATTGTA+AGG - chr4.3:79641698-79641717 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG - chr4.3:79641870-79641889 None:intergenic 40.0%
TTCGTACACATCTCAATGCA+CGG - chr4.3:79641324-79641343 None:intergenic 40.0%
TTTCACTTCAAGATCGCCAA+GGG - chr4.3:79642198-79642217 None:intergenic 40.0%
! AATTTGGATTCTGAGGGTCA+GGG + chr4.3:79638934-79638953 MS.gene037649:CDS 40.0%
! ACACCTTCAATCAGAAGTGT+CGG - chr4.3:79639246-79639265 None:intergenic 40.0%
! AGAGGTTTTTGATGCTTCCA+AGG - chr4.3:79638687-79638706 None:intergenic 40.0%
! ATCGTTGGTTGTTTCAGTCT+AGG + chr4.3:79639768-79639787 MS.gene037649:intron 40.0%
! CCAAACATCATTTGGAGTGA+GGG - chr4.3:79638725-79638744 None:intergenic 40.0%
! CTCATAAGAGTGCATTAAGG+TGG + chr4.3:79640376-79640395 MS.gene037649:intron 40.0%
! CTTTATGGTTTGCACTTTGC+AGG + chr4.3:79642609-79642628 MS.gene037649:intron 40.0%
! GACTTTGAGAGTATACTCCA+AGG - chr4.3:79639405-79639424 None:intergenic 40.0%
! GTACAAGAGTGTAGAGAACT+TGG + chr4.3:79641767-79641786 MS.gene037649:CDS 40.0%
! TCCAAACATCATTTGGAGTG+AGG - chr4.3:79638726-79638745 None:intergenic 40.0%
! TGGTCTTTCATCGGTTAGTT+TGG - chr4.3:79642430-79642449 None:intergenic 40.0%
! TTGTTGATCATTGTTCTGGG+TGG - chr4.3:79638629-79638648 None:intergenic 40.0%
!! AATTCCCTTTGAGGTTCGAT+AGG - chr4.3:79640663-79640682 None:intergenic 40.0%
!! ATTCCCTTTGAGGTTCGATA+GGG - chr4.3:79640662-79640681 None:intergenic 40.0%
!! GGAAAATGGGTCGTTGTTTT+TGG + chr4.3:79638987-79639006 MS.gene037649:CDS 40.0%
!! GTTACTCTAAGGAGTGTTTG+AGG - chr4.3:79641290-79641309 None:intergenic 40.0%
!! TGTACAGCTCTGGCTTTAAT+TGG + chr4.3:79639471-79639490 MS.gene037649:intron 40.0%
AACGTGACATCCCAATTCTC+GGG - chr4.3:79639212-79639231 None:intergenic 45.0%
ACTGCTGATGCAAACTGGTT+TGG - chr4.3:79641555-79641574 None:intergenic 45.0%
AGCCCACAAAAATTGGCACT+GGG - chr4.3:79639443-79639462 None:intergenic 45.0%
AGCTAGGGATGATGCATTTC+AGG - chr4.3:79641046-79641065 None:intergenic 45.0%
AGGCGAATGATAGTAGCAAG+TGG - chr4.3:79638601-79638620 None:intergenic 45.0%
AGGGTTCAACAACACTTGAG+GGG - chr4.3:79640643-79640662 None:intergenic 45.0%
ATGGAAGCCACCAAAGAACT+AGG - chr4.3:79639036-79639055 None:intergenic 45.0%
CACTTGAGGGGAATTGCAAT+AGG - chr4.3:79640631-79640650 None:intergenic 45.0%
CAGGAACACCAAAGCAAGAA+AGG + chr4.3:79641919-79641938 MS.gene037649:CDS 45.0%
CAGGGGAATGAGGTTCAAAA+TGG + chr4.3:79638952-79638971 MS.gene037649:CDS 45.0%
CCAAATTGTGGTCGCAATTG+TGG + chr4.3:79639622-79639641 MS.gene037649:intron 45.0%
CCACAATTGCGACCACAATT+TGG - chr4.3:79639625-79639644 None:intergenic 45.0%
CCACTACTCATATACAAGGG+GGG - chr4.3:79640763-79640782 None:intergenic 45.0%
CCCTCACTCCAAATGATGTT+TGG + chr4.3:79638722-79638741 MS.gene037649:CDS 45.0%
CCGATGAAAGACCACATACA+AGG + chr4.3:79642436-79642455 MS.gene037649:intron 45.0%
CTCTGATCCTATTGATCCAG+AGG + chr4.3:79640568-79640587 MS.gene037649:intron 45.0%
CTCTGGATCAATAGGATCAG+AGG - chr4.3:79640570-79640589 None:intergenic 45.0%
CTTTATCAGGATCAACCCTC+TGG - chr4.3:79640587-79640606 None:intergenic 45.0%
CTTTCACTTCAAGATCGCCA+AGG - chr4.3:79642199-79642218 None:intergenic 45.0%
GAACCCTATCGAACCTCAAA+GGG + chr4.3:79640656-79640675 MS.gene037649:intron 45.0%
GAGGAAGTCACACACAACAT+TGG + chr4.3:79639099-79639118 MS.gene037649:CDS 45.0%
GATCAACCCTCTGGATCAAT+AGG - chr4.3:79640578-79640597 None:intergenic 45.0%
GCCACTACTCATATACAAGG+GGG - chr4.3:79640764-79640783 None:intergenic 45.0%
GGGGAATGAGGTTCAAAATG+GGG + chr4.3:79638954-79638973 MS.gene037649:CDS 45.0%
GGGTTTGTACGCTTTCATAG+AGG - chr4.3:79638705-79638724 None:intergenic 45.0%
GTGAAGAGACCCGCATTATA+TGG + chr4.3:79642098-79642117 MS.gene037649:CDS 45.0%
GTGCAGAATTAGGTGTGAAC+TGG + chr4.3:79640241-79640260 MS.gene037649:intron 45.0%
GTGGTCTATGCGAGAAAGAA+TGG + chr4.3:79640395-79640414 MS.gene037649:intron 45.0%
GTGGTGAGTGTTTGTACATG+AGG - chr4.3:79641882-79641901 None:intergenic 45.0%
TAACTCCACCAACATCTGCA+TGG - chr4.3:79639055-79639074 None:intergenic 45.0%
TAGAGAACTTGGACTCTTCC+TGG + chr4.3:79641778-79641797 MS.gene037649:CDS 45.0%
TAGAGGCTAAGCTGTACTTG+AGG - chr4.3:79641476-79641495 None:intergenic 45.0%
TAGCCCACAAAAATTGGCAC+TGG - chr4.3:79639444-79639463 None:intergenic 45.0%
TAGGCTTGATGAACTCGCTA+AGG + chr4.3:79642750-79642769 MS.gene037649:CDS 45.0%
TCTTGGATCCATTGCAGTCA+AGG - chr4.3:79642042-79642061 None:intergenic 45.0%
TGAACCCTATCGAACCTCAA+AGG + chr4.3:79640655-79640674 MS.gene037649:intron 45.0%
TGCAAAAGCCTTGACTGCAA+TGG + chr4.3:79642031-79642050 MS.gene037649:CDS 45.0%
TTCACTTCAAGATCGCCAAG+GGG - chr4.3:79642197-79642216 None:intergenic 45.0%
TTGATGTCAAAGAGGCTGCT+AGG - chr4.3:79642645-79642664 None:intergenic 45.0%
TTGGTGAAGCTGAGGTAAAG+TGG + chr4.3:79642228-79642247 MS.gene037649:intron 45.0%
! AGTGAGAACTGGGAGAGTTT+TGG + chr4.3:79640507-79640526 MS.gene037649:intron 45.0%
! ATGCAGATGTTGGTGGAGTT+AGG + chr4.3:79639054-79639073 MS.gene037649:CDS 45.0%
! ATTTGGATTCTGAGGGTCAG+GGG + chr4.3:79638935-79638954 MS.gene037649:CDS 45.0%
! CATTGTTCTGGGTGGTTAAG+AGG - chr4.3:79638621-79638640 None:intergenic 45.0%
! CTCCCAGTGCCAATTTTTGT+GGG + chr4.3:79639438-79639457 MS.gene037649:intron 45.0%
! GAAGGTTGTGCCTAGTTCTT+TGG + chr4.3:79639023-79639042 MS.gene037649:CDS 45.0%
! GAATTTGGATTCTGAGGGTC+AGG + chr4.3:79638933-79638952 MS.gene037649:CDS 45.0%
! GGGAATAAGGGTGCAGAATT+AGG + chr4.3:79640231-79640250 MS.gene037649:intron 45.0%
! GTGAGAACTGGGAGAGTTTT+GGG + chr4.3:79640508-79640527 MS.gene037649:intron 45.0%
! GTGTGAACTGGGAGAGTTTT+TGG + chr4.3:79640253-79640272 MS.gene037649:intron 45.0%
! TGCAGATGTTGGTGGAGTTA+GGG + chr4.3:79639055-79639074 MS.gene037649:CDS 45.0%
! TGGTTTGGACAACCAAACTG+TGG - chr4.3:79641846-79641865 None:intergenic 45.0%
! TTGCGACTGCAATTGCTGTT+TGG + chr4.3:79639719-79639738 MS.gene037649:intron 45.0%
!! ACAGTAGAAGTACCGGTAGT+GGG + chr4.3:79641972-79641991 MS.gene037649:CDS 45.0%
!! CTGATGCAAACTGGTTTGGT+AGG - chr4.3:79641551-79641570 None:intergenic 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG + chr4.3:79642220-79642239 MS.gene037649:CDS 45.0%
!! GTAATCATAAGTGTCGGGGT+CGG - chr4.3:79639295-79639314 None:intergenic 45.0%
!! TGCGACTGCAATTGCTGTTT+GGG + chr4.3:79639720-79639739 MS.gene037649:intron 45.0%
AACAGCGCGTGTGTTTGTGT+AGG - chr4.3:79641349-79641368 None:intergenic 50.0%
AGGCTAAGCTGTACTTGAGG+AGG - chr4.3:79641473-79641492 None:intergenic 50.0%
AGTAAGACCATGGAGTGTGC+AGG + chr4.3:79639372-79639391 MS.gene037649:intron 50.0%
ATGTCAAAGAGGCTGCTAGG+AGG - chr4.3:79642642-79642661 None:intergenic 50.0%
CCCCCCTTGTATATGAGTAG+TGG + chr4.3:79640760-79640779 MS.gene037649:intron 50.0%
CGACATCGCAACTGCAATTG+TGG - chr4.3:79639673-79639692 None:intergenic 50.0%
CTCTGACTGCTGATGCAAAC+TGG - chr4.3:79641560-79641579 None:intergenic 50.0%
CTTGGACTCTTCCTGGTGTA+CGG + chr4.3:79641785-79641804 MS.gene037649:CDS 50.0%
GAAATCACTCCTCCCACTAC+CGG - chr4.3:79641987-79642006 None:intergenic 50.0%
GACACCAGGATTGAGTAACG+CGG - chr4.3:79641820-79641839 None:intergenic 50.0%
GAGCGTGTCAACGAAGTCTT+TGG - chr4.3:79638560-79638579 None:intergenic 50.0%
GCTACTCGAACGGTAATGTC+TGG + chr4.3:79639874-79639893 MS.gene037649:intron 50.0%
TTTAATTGGAGCCCCACAGG+TGG + chr4.3:79639485-79639504 MS.gene037649:intron 50.0%
! CCACAAAAATTGGCACTGGG+AGG - chr4.3:79639440-79639459 None:intergenic 50.0%
! CCTCCCAGTGCCAATTTTTG+TGG + chr4.3:79639437-79639456 MS.gene037649:intron 50.0%
! CTAGCTAGTCTGTACAGCTC+TGG + chr4.3:79639461-79639480 MS.gene037649:intron 50.0%
! GCACCGACACTTCTGATTGA+AGG + chr4.3:79639240-79639259 MS.gene037649:intron 50.0%
! GGTTGTGCCTAGTTCTTTGG+TGG + chr4.3:79639026-79639045 MS.gene037649:CDS 50.0%
!! CACAGTAGAAGTACCGGTAG+TGG + chr4.3:79641971-79641990 MS.gene037649:CDS 50.0%
AAATCCCACCGTCCACCTGT+GGG - chr4.3:79639500-79639519 None:intergenic 55.0%
ACCATGGAGTGTGCAGGCTT+AGG + chr4.3:79639378-79639397 MS.gene037649:intron 55.0%
AGTGTGCAGGCTTAGGACCT+TGG + chr4.3:79639385-79639404 MS.gene037649:intron 55.0%
CATGAGGAATGTTGAGGGGC+TGG - chr4.3:79641866-79641885 None:intergenic 55.0%
GGCTTCCATGCAGATGTTGG+TGG + chr4.3:79639047-79639066 MS.gene037649:CDS 55.0%
GGTGGCTTCCATGCAGATGT+TGG + chr4.3:79639044-79639063 MS.gene037649:CDS 55.0%
TCCTAAGCCTGCACACTCCA+TGG - chr4.3:79639382-79639401 None:intergenic 55.0%
! GGCTTTAATTGGAGCCCCAC+AGG + chr4.3:79639482-79639501 MS.gene037649:intron 55.0%
! TTCTGAGGGTCAGGGGAATG+AGG + chr4.3:79638942-79638961 MS.gene037649:CDS 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG - chr4.3:79641861-79641880 None:intergenic 55.0%
!! GTAGAAGTACCGGTAGTGGG+AGG + chr4.3:79641975-79641994 MS.gene037649:CDS 55.0%
AATCCCACCGTCCACCTGTG+GGG - chr4.3:79639499-79639518 None:intergenic 60.0%
ATTGGAGCCCCACAGGTGGA+CGG + chr4.3:79639489-79639508 MS.gene037649:intron 60.0%
CAAATCCCACCGTCCACCTG+TGG - chr4.3:79639501-79639520 None:intergenic 60.0%
CCAAACTGTGGTGCGACACC+AGG - chr4.3:79641834-79641853 None:intergenic 60.0%
CGCTCCGCGTTACTCAATCC+TGG + chr4.3:79641813-79641832 MS.gene037649:CDS 60.0%
TACAAGGGGGGAGCCCTTGA+AGG - chr4.3:79640751-79640770 None:intergenic 60.0%
!! CCTGGTGTCGCACCACAGTT+TGG + chr4.3:79641831-79641850 MS.gene037649:CDS 60.0%
GTCGGGGTCGGACACGACAT+GGG - chr4.3:79639283-79639302 None:intergenic 65.0%
TGTCGGGGTCGGACACGACA+TGG - chr4.3:79639284-79639303 None:intergenic 65.0%
GAGCCCCACAGGTGGACGGT+GGG + chr4.3:79639493-79639512 MS.gene037649:intron 70.0%
GGAGCGCGAGTCCGTACACC+AGG - chr4.3:79641799-79641818 None:intergenic 70.0%
GGAGCCCCACAGGTGGACGG+TGG + chr4.3:79639492-79639511 MS.gene037649:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 79638472 79642792 79638472 ID=MS.gene037649
chr4.3 mRNA 79638472 79642792 79638472 ID=MS.gene037649.t1;Parent=MS.gene037649
chr4.3 exon 79638472 79639131 79638472 ID=MS.gene037649.t1.exon1;Parent=MS.gene037649.t1
chr4.3 CDS 79638472 79639131 79638472 ID=cds.MS.gene037649.t1;Parent=MS.gene037649.t1
chr4.3 exon 79641462 79642241 79641462 ID=MS.gene037649.t1.exon2;Parent=MS.gene037649.t1
chr4.3 CDS 79641462 79642241 79641462 ID=cds.MS.gene037649.t1;Parent=MS.gene037649.t1
chr4.3 exon 79642631 79642792 79642631 ID=MS.gene037649.t1.exon3;Parent=MS.gene037649.t1
chr4.3 CDS 79642631 79642792 79642631 ID=cds.MS.gene037649.t1;Parent=MS.gene037649.t1
Gene Sequence

>MS.gene037649

ATGGCTTCTGAAGAAGAGTCAAAAACGATTCCACTGAAAATCTTAATAGACAGAGAAAACAATAAAGTTGTCGCTGTTGAATCAACCAAAGACTTCGTTGACACGCTCTTCAGCTTCCTTTCTTTTCCACTTGCTACTATCATTCGCCTCTTAACCACCCAGAACAATGATCAACAACAACTAGAACAAGGATCCTCAGAATCAACATCATTCCTTGGAAGCATCAAAAACCTCTATGAAAGCGTACAAACCCTCACTCCAAATGATGTTTGGAACCCTGTTTGTAAACAAATGTTGTTGAATCCGAAGAATCCATGTGAATCATTATGCAAGAAACTTTTCTTGAATATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATGCTTGTAACAAGTTTACAACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAATAAACAACCTAAGAATTTGGATTCTGAGGGTCAGGGGAATGAGGTTCAAAATGGGGTTTTTGTTAAGGAAAATGGGTCGTTGTTTTTGGTGTTTGATGATTTGAAGGTTGTGCCTAGTTCTTTGGTGGCTTCCATGCAGATGTTGGTGGAGTTAGGGTATTCTGATTTGAGTCAATTAGAGGAAGTCACACACAACATTGGAAAACAGGAGGTAATGGTGTTGTCTTTTGCAATATGTATTTATCTCACTTTTTTTCTTTTTCTTTTTCATTTCAAGTTTTGAGTAAACCCGAGAATTGGGATGTCACGTTACTCTGTTGCACCGACACTTCTGATTGAAGGTGTGTTTAGGTGTCTAACCCATGTCGTGTCCGACCCCGACACTTATGATTACATTGAATTATGTCATTTTCTCATAATTCTATTGACTTCATAATATGTGAGTTTGTAGAGTAAGACCATGGAGTGTGCAGGCTTAGGACCTTGGAGTATACTCTCAAAGTCTCGCATTCGAATCCTCCCAGTGCCAATTTTTGTGGGCTAGCTAGTCTGTACAGCTCTGGCTTTAATTGGAGCCCCACAGGTGGACGGTGGGATTTGTCTCCCAAATTAGTTGGTCCTTGAACTGCATACTGAGTTTTGAAAAAAAAACTGTAGGTTAAGAAAATTCAAAAAAATATTTGAAACTATGAATCATTGTTCCAAATTGTGGTCGCAATTGTGGCTGCGATGCGAACCTTGATATGCAACCACAATTGCAGTTGCGATGTCGTTGCAGAGACCTCTAAAACCTTTATATTGCGACTGCAATTGCTGTTTGGGACTGCAACTTAGAACTATGTTGTTAATCGTTGGTTGTTTCAGTCTAGGATTATTTGGGACTCAGATCTTAAGCGTTATCATTTTAGTCTAGGCTTAGTTAGAATTCTGGTGTTGACTATGAGTTTCAAAATGCTACTCGAACGGTAATGTCTGGATCAAAATACCTGACGATTAATGAGTTCGAGATCTTTTCTGATTTTTTTTCTTGTTTCACAAACAATTTTAACAGTGTCCTATAATTTATTGTTTGAACTTTGAACTTGCATTGGATCTTTAGACCATTCTTGAATTATGAACTTTCAACCTATATAACTTGATGCTTTTTGGGTAGGATGTATTTGGCGTAGTATCTGTTAAGAAGCTGATAGAAGAGCATTTATTAAGAAAGCCTATGTGAGAAAGAATATAAAGGAAAGTAAGGAGGGAAATAAATTGGTAATAACCGATAAGCTGCAAACTAACAGAAAAAGATGATGTAATAAGTAGGAGGGAATAAGGGTGCAGAATTAGGTGTGAACTGGGAGAGTTTTTGGTGCATACTCTGAATCTTTAGATCGTACTTGAATTATGAATCTTTGTCCTAAAACTTAAGATAGTTTGGATTTGACATAGTAAGGGACATCTGTTAAGAACCTCATAAGAGTGCATTAAGGTGGTCTATGCGAGAAAGAATGGAAAGGAAAATAAGTAGGGAAATCGAGTGGTTGTAACTGATATAGCTGAGGGTAACAGAATGTAATAAGTAAGGGACTCTTACAGAAGTAAGTGAGAACTGGGAGAGTTTTGGGCCACTCTTAAATTAGCCTGCAGTTTATAATTTTTTTCCTCTGATCCTATTGATCCAGAGGGTTGATCCTGATAAAGTTCATCTTTTTCCATTGAATTCCTATTGCAATTCCCCTCAAGTGTTGTTGAACCCTATCGAACCTCAAAGGGAATTAATTGGGTAAAAGAGAAGATGGTTTTTACTGATTGAATTAAACAAAACCAAAGAGAAAGATTTCTCCTTCAAGGGCTCCCCCCTTGTATATGAGTAGTGGCTCTCTCTTTTTGATCAATACTAACATTTGCCATTAAAATAAACTTGGGGTCCGTGTACTTTGTGAAAACATTTACTATTTTCATTTCCTAAAATGTGTTAGTTGTATTTATTAATCAAGGAAATGTGTTGGTTGTATTTATTAACAAGGAAAATGTGTCGGTTGTATTTGTTAACAAGGAAAAAAAAGAATCTTGAATTAAACAATTGTCTTGCATTTCAAGAAAAATGAAAATATCGAAAGAACTATTTTCATTATTTCCTGAAATGCATCATCCCTAGCTAGCATTTTATCTTATCTCCATCACAAAGACTCACTTTAAAAGTCTTTTTTTTCTCCTTATTAACAAGTAAACCTAAGACCTCTTGAAATAAAGAACAAGTAAAACTAACACAAATTCTATAAAATGAAAATAGAAAATGGTTTCACAAAATTAAACGGGTCCTTACCTTAATGGCTCATTGTTTAATTAGTGTTTTTGTCATTGGCTTCAGACGAATGTTTCCTCAAACACTCCTTAGAGTAACTTTGGTATCAACCGTGCATTGAGATGTGTACGAACACCTACACAAACACACGCGCTGTTATTCTTACCGTTTCGTTTTAACATCTTGTATATATGCCAAGTAATGTAAACTTGTTTGTGAAATATTTTAACAAATACAATTTTGATGTACAGATGTTGAACCTCCTCAAGTACAGCTTAGCCTCTAATGAGCCATTGACAAATACAATTTTGAAAAGCAGCTCCAAGAAGAAAGATAACCTACCAAACCAGTTTGCATCAGCAGTCAGAGTAAAAACATGCACCCGTGACATTAAAATGGATGTTAAGCTAGTGCGAAGTAAATCTCAGAAAAAGATAATCTTTGCAGAAACCGGTGAAAACTTTGTTGACTTCATGTTTAGCTTCCTTACAATACCATTAGGGTCCATTATAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGAACTTGGACTCTTCCTGGTGTACGGACTCGCGCTCCGCGTTACTCAATCCTGGTGTCGCACCACAGTTTGGTTGTCCAAACCAGCCCCTCAACATTCCTCATGTACAAACACTCACCACTACATATTATTATGGTACAGGAACACCAAAGCAAGAAAGGGATTTACGCTATAGTAGTGCCCGTTATAACACAGTAGAAGTACCGGTAGTGGGAGGAGTGATTTCCAAGACAATGGGATCAATTTATAATGCAAAAGCCTTGACTGCAATGGATCCAAGATCTCCTAACAAATCGATTAAAGATGTGGTGGGATTTGTGAAGAGACCCGCATTATATGGTATAGGAGATGATCTAAAAGTAAAATCACTTTCTGCTAATTATTGCCTTTCATATTTGAAAGAATTGAGCTTTCCCCTTGGCGATCTTGAAGTGAAAGTGATAAGCATTGGTGAAGCTGAGGTAAAGTGGCTATTATTACTGAATTTATAATTTTTTTCTTGAGTAAACAGTCACTTTAGTCCTTAAACATGTGAGACGATGTCACTATAGTCTTATTGTATCAAAATTATAAAAAACATCCCTGAATGTGTTTTCTTGTAGTAATTTTATTCACGAAAGTGACCAATGGAAGATACATCAGAAGACCAAACTAACCGATGAAAGACCACATACAAGGGTTAAACTGAATAACAAAAGACACATTCATGTATGTTTTCTTTTTTAAATTTTGATACATTCAGGATCTATACTAACAATAACTCACACATTTAAGGACCAAAATGGTTATTTACTCTCTTGTTTTGTTTTCTTTGTTGTTGATACCCTTCTTTATGGTTTGCACTTTGCAGGCTCTGAGCCTCCTAGCAGCCTCTTTGACATCAAAATTTACACTGACTAGTGGACTAGAAGAATTTTTTAATGTGCCAAAACAAGATTCAAATTTGACCTCAAAGTATGTTCAAACTAGTAGGCTTGATGAACTCGCTAAGGAGCCTAAACTAGAAGACTGA
Protein sequence

>MS.gene037649.t1

MASEEESKTIPLKILIDRENNKVVAVESTKDFVDTLFSFLSFPLATIIRLLTTQNNDQQQLEQGSSESTSFLGSIKNLYESVQTLTPNDVWNPVCKQMLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDACNKFTTFQNLDCTCGKPTNKQPKNLDSEGQGNEVQNGVFVKENGSLFLVFDDLKVVPSSLVASMQMLVELGYSDLSQLEEVTHNIGKQEMLNLLKYSLASNEPLTNTILKSSSKKKDNLPNQFASAVRVKTCTRDIKMDVKLVRSKSQKKIIFAETGENFVDFMFSFLTIPLGSIIKVLDGNSFVGCVDNLYKSVENLDSSWCTDSRSALLNPGVAPQFGCPNQPLNIPHVQTLTTTYYYGTGTPKQERDLRYSSARYNTVEVPVVGGVISKTMGSIYNAKALTAMDPRSPNKSIKDVVGFVKRPALYGIGDDLKVKSLSANYCLSYLKELSFPLGDLEVKVISIGEAEALSLLAASLTSKFTLTSGLEEFFNVPKQDSNLTSKYVQTSRLDELAKEPKLED